Multiple sequence alignment - TraesCS1D01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G183300 chr1D 100.000 2374 0 0 1 2374 254525090 254522717 0 4348
1 TraesCS1D01G183300 chr1D 94.737 1539 65 13 457 1988 397109464 397110993 0 2379
2 TraesCS1D01G183300 chrUn 98.284 1923 23 9 457 2374 93411068 93412985 0 3360
3 TraesCS1D01G183300 chrUn 97.975 1383 21 6 994 2374 403667276 403668653 0 2392
4 TraesCS1D01G183300 chrUn 97.871 1221 19 6 1156 2374 93414138 93415353 0 2104
5 TraesCS1D01G183300 chrUn 100.000 446 0 0 1 446 216506635 216507080 0 824
6 TraesCS1D01G183300 chr5D 97.920 1923 28 12 457 2374 503216781 503214866 0 3319
7 TraesCS1D01G183300 chr5D 97.292 1920 42 10 457 2374 329121544 329123455 0 3249
8 TraesCS1D01G183300 chr5D 99.552 446 2 0 1 446 503244755 503244310 0 813
9 TraesCS1D01G183300 chr5D 99.327 446 3 0 1 446 503265820 503266265 0 808
10 TraesCS1D01G183300 chr2D 97.919 1922 30 10 457 2374 272795331 272797246 0 3319
11 TraesCS1D01G183300 chr2D 98.119 1382 19 6 994 2374 635584530 635585905 0 2401
12 TraesCS1D01G183300 chr2D 99.552 446 2 0 1 446 591984092 591983647 0 813
13 TraesCS1D01G183300 chr6D 97.869 1924 28 11 457 2374 168250103 168248187 0 3314
14 TraesCS1D01G183300 chr6D 99.327 446 3 0 1 446 168266068 168265623 0 808
15 TraesCS1D01G183300 chr6D 99.327 446 3 0 1 446 389246339 389246784 0 808
16 TraesCS1D01G183300 chr3A 97.657 1921 35 8 457 2374 672911446 672913359 0 3290
17 TraesCS1D01G183300 chr3A 99.327 446 3 0 1 446 66005649 66006094 0 808
18 TraesCS1D01G183300 chr6A 96.622 1924 52 10 457 2374 260117717 260119633 0 3181
19 TraesCS1D01G183300 chr2A 96.974 1388 33 9 457 1841 335829459 335828078 0 2322
20 TraesCS1D01G183300 chr2A 99.327 446 3 0 1 446 726906972 726907417 0 808
21 TraesCS1D01G183300 chr3D 97.958 1322 20 6 1055 2374 24171316 24170000 0 2285
22 TraesCS1D01G183300 chr3D 98.638 881 11 1 1495 2374 24169339 24168459 0 1559
23 TraesCS1D01G183300 chr3D 99.776 446 1 0 1 446 589264041 589264486 0 819
24 TraesCS1D01G183300 chr7B 99.327 446 3 0 1 446 663099942 663100387 0 808


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G183300 chr1D 254522717 254525090 2373 True 4348 4348 100.0000 1 2374 1 chr1D.!!$R1 2373
1 TraesCS1D01G183300 chr1D 397109464 397110993 1529 False 2379 2379 94.7370 457 1988 1 chr1D.!!$F1 1531
2 TraesCS1D01G183300 chrUn 93411068 93415353 4285 False 2732 3360 98.0775 457 2374 2 chrUn.!!$F3 1917
3 TraesCS1D01G183300 chrUn 403667276 403668653 1377 False 2392 2392 97.9750 994 2374 1 chrUn.!!$F2 1380
4 TraesCS1D01G183300 chr5D 503214866 503216781 1915 True 3319 3319 97.9200 457 2374 1 chr5D.!!$R1 1917
5 TraesCS1D01G183300 chr5D 329121544 329123455 1911 False 3249 3249 97.2920 457 2374 1 chr5D.!!$F1 1917
6 TraesCS1D01G183300 chr2D 272795331 272797246 1915 False 3319 3319 97.9190 457 2374 1 chr2D.!!$F1 1917
7 TraesCS1D01G183300 chr2D 635584530 635585905 1375 False 2401 2401 98.1190 994 2374 1 chr2D.!!$F2 1380
8 TraesCS1D01G183300 chr6D 168248187 168250103 1916 True 3314 3314 97.8690 457 2374 1 chr6D.!!$R1 1917
9 TraesCS1D01G183300 chr3A 672911446 672913359 1913 False 3290 3290 97.6570 457 2374 1 chr3A.!!$F2 1917
10 TraesCS1D01G183300 chr6A 260117717 260119633 1916 False 3181 3181 96.6220 457 2374 1 chr6A.!!$F1 1917
11 TraesCS1D01G183300 chr2A 335828078 335829459 1381 True 2322 2322 96.9740 457 1841 1 chr2A.!!$R1 1384
12 TraesCS1D01G183300 chr3D 24168459 24171316 2857 True 1922 2285 98.2980 1055 2374 2 chr3D.!!$R1 1319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.038251 TGAGCTAATAGCCCATCGCG 60.038 55.0 8.88 0.0 43.77 5.87 F
424 425 0.040794 ACCTTCCAGTACGGCTACCT 59.959 55.0 0.00 0.0 33.14 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1348 9.587772 TTTGTAGATCTTTCTCTAATTCTTCGG 57.412 33.333 0.0 0.0 33.17 4.30 R
2338 6269 1.207593 CGCAACGGAGCTTCCAAAG 59.792 57.895 0.0 0.0 35.91 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.583520 CTGAGAGCCCTCACAGCC 59.416 66.667 9.26 0.00 44.01 4.85
24 25 3.005539 TGAGAGCCCTCACAGCCC 61.006 66.667 0.00 0.00 44.01 5.19
25 26 3.005539 GAGAGCCCTCACAGCCCA 61.006 66.667 0.00 0.00 39.24 5.36
26 27 3.007920 AGAGCCCTCACAGCCCAG 61.008 66.667 0.00 0.00 0.00 4.45
27 28 4.106925 GAGCCCTCACAGCCCAGG 62.107 72.222 0.00 0.00 0.00 4.45
30 31 4.729918 CCCTCACAGCCCAGGCAC 62.730 72.222 12.03 0.00 44.88 5.01
31 32 3.957586 CCTCACAGCCCAGGCACA 61.958 66.667 12.03 0.00 44.88 4.57
32 33 2.113774 CTCACAGCCCAGGCACAA 59.886 61.111 12.03 0.00 44.88 3.33
33 34 2.203337 TCACAGCCCAGGCACAAC 60.203 61.111 12.03 0.00 44.88 3.32
34 35 3.663176 CACAGCCCAGGCACAACG 61.663 66.667 12.03 0.00 44.88 4.10
35 36 3.872603 ACAGCCCAGGCACAACGA 61.873 61.111 12.03 0.00 44.88 3.85
36 37 3.357079 CAGCCCAGGCACAACGAC 61.357 66.667 12.03 0.00 44.88 4.34
37 38 4.988598 AGCCCAGGCACAACGACG 62.989 66.667 12.03 0.00 44.88 5.12
40 41 3.276091 CCAGGCACAACGACGCAA 61.276 61.111 0.00 0.00 0.00 4.85
41 42 2.616330 CCAGGCACAACGACGCAAT 61.616 57.895 0.00 0.00 0.00 3.56
42 43 1.282570 CAGGCACAACGACGCAATT 59.717 52.632 0.00 0.00 0.00 2.32
43 44 0.515127 CAGGCACAACGACGCAATTA 59.485 50.000 0.00 0.00 0.00 1.40
44 45 1.130373 CAGGCACAACGACGCAATTAT 59.870 47.619 0.00 0.00 0.00 1.28
45 46 1.396996 AGGCACAACGACGCAATTATC 59.603 47.619 0.00 0.00 0.00 1.75
46 47 1.129624 GGCACAACGACGCAATTATCA 59.870 47.619 0.00 0.00 0.00 2.15
47 48 2.430956 GCACAACGACGCAATTATCAG 58.569 47.619 0.00 0.00 0.00 2.90
48 49 2.787723 GCACAACGACGCAATTATCAGG 60.788 50.000 0.00 0.00 0.00 3.86
49 50 2.006888 ACAACGACGCAATTATCAGGG 58.993 47.619 0.00 0.00 0.00 4.45
50 51 1.330521 CAACGACGCAATTATCAGGGG 59.669 52.381 0.00 0.00 0.00 4.79
51 52 0.814010 ACGACGCAATTATCAGGGGC 60.814 55.000 0.00 0.00 0.00 5.80
53 54 2.639286 CGCAATTATCAGGGGCGC 59.361 61.111 0.00 0.00 41.27 6.53
54 55 2.639286 GCAATTATCAGGGGCGCG 59.361 61.111 0.00 0.00 0.00 6.86
55 56 2.639286 CAATTATCAGGGGCGCGC 59.361 61.111 25.94 25.94 0.00 6.86
56 57 1.893808 CAATTATCAGGGGCGCGCT 60.894 57.895 32.29 12.78 0.00 5.92
57 58 1.598130 AATTATCAGGGGCGCGCTC 60.598 57.895 32.29 29.46 0.00 5.03
58 59 2.044806 AATTATCAGGGGCGCGCTCT 62.045 55.000 32.56 24.61 0.00 4.09
59 60 1.185618 ATTATCAGGGGCGCGCTCTA 61.186 55.000 32.56 17.34 0.00 2.43
60 61 2.083835 TTATCAGGGGCGCGCTCTAC 62.084 60.000 32.56 15.83 0.00 2.59
66 67 4.129737 GGCGCGCTCTACCACTGA 62.130 66.667 32.29 0.00 0.00 3.41
67 68 2.580867 GCGCGCTCTACCACTGAG 60.581 66.667 26.67 0.00 34.87 3.35
76 77 4.513198 CTCTACCACTGAGCTAATAGCC 57.487 50.000 8.88 1.34 43.77 3.93
77 78 3.231818 TCTACCACTGAGCTAATAGCCC 58.768 50.000 8.88 0.00 43.77 5.19
78 79 1.879575 ACCACTGAGCTAATAGCCCA 58.120 50.000 8.88 1.97 43.77 5.36
79 80 2.412591 ACCACTGAGCTAATAGCCCAT 58.587 47.619 8.88 0.00 43.77 4.00
80 81 2.370189 ACCACTGAGCTAATAGCCCATC 59.630 50.000 8.88 0.81 43.77 3.51
81 82 2.611473 CCACTGAGCTAATAGCCCATCG 60.611 54.545 8.88 0.00 43.77 3.84
82 83 1.001406 ACTGAGCTAATAGCCCATCGC 59.999 52.381 8.88 0.00 43.77 4.58
83 84 0.038251 TGAGCTAATAGCCCATCGCG 60.038 55.000 8.88 0.00 43.77 5.87
84 85 1.355066 GAGCTAATAGCCCATCGCGC 61.355 60.000 8.88 0.00 43.77 6.86
85 86 2.730672 GCTAATAGCCCATCGCGCG 61.731 63.158 26.76 26.76 44.76 6.86
86 87 2.048597 TAATAGCCCATCGCGCGG 60.049 61.111 31.69 15.09 44.76 6.46
109 110 3.415186 CCAAAGGGAGGCCTGCTA 58.585 61.111 24.77 0.00 35.59 3.49
110 111 1.077429 CCAAAGGGAGGCCTGCTAC 60.077 63.158 24.77 8.42 35.59 3.58
111 112 1.450312 CAAAGGGAGGCCTGCTACG 60.450 63.158 24.77 6.67 0.00 3.51
112 113 3.330992 AAAGGGAGGCCTGCTACGC 62.331 63.158 24.77 11.18 0.00 4.42
118 119 2.877691 GGCCTGCTACGCCAAAAG 59.122 61.111 0.00 0.00 46.27 2.27
119 120 2.179267 GCCTGCTACGCCAAAAGC 59.821 61.111 0.00 0.00 39.25 3.51
131 132 2.394708 GCCAAAAGCGAGAAAAACTCC 58.605 47.619 0.00 0.00 42.18 3.85
132 133 2.223711 GCCAAAAGCGAGAAAAACTCCA 60.224 45.455 0.00 0.00 42.18 3.86
133 134 3.552890 GCCAAAAGCGAGAAAAACTCCAT 60.553 43.478 0.00 0.00 42.18 3.41
134 135 4.229876 CCAAAAGCGAGAAAAACTCCATC 58.770 43.478 0.00 0.00 42.18 3.51
135 136 4.229876 CAAAAGCGAGAAAAACTCCATCC 58.770 43.478 0.00 0.00 42.18 3.51
136 137 2.115343 AGCGAGAAAAACTCCATCCC 57.885 50.000 0.00 0.00 42.18 3.85
137 138 1.630878 AGCGAGAAAAACTCCATCCCT 59.369 47.619 0.00 0.00 42.18 4.20
138 139 2.040412 AGCGAGAAAAACTCCATCCCTT 59.960 45.455 0.00 0.00 42.18 3.95
139 140 2.820197 GCGAGAAAAACTCCATCCCTTT 59.180 45.455 0.00 0.00 42.18 3.11
140 141 3.119814 GCGAGAAAAACTCCATCCCTTTC 60.120 47.826 0.00 0.00 42.18 2.62
141 142 3.440522 CGAGAAAAACTCCATCCCTTTCC 59.559 47.826 0.00 0.00 42.18 3.13
142 143 4.667573 GAGAAAAACTCCATCCCTTTCCT 58.332 43.478 0.00 0.00 39.53 3.36
143 144 5.079998 AGAAAAACTCCATCCCTTTCCTT 57.920 39.130 0.00 0.00 0.00 3.36
144 145 5.467738 AGAAAAACTCCATCCCTTTCCTTT 58.532 37.500 0.00 0.00 0.00 3.11
145 146 5.905331 AGAAAAACTCCATCCCTTTCCTTTT 59.095 36.000 0.00 0.00 0.00 2.27
146 147 5.551305 AAAACTCCATCCCTTTCCTTTTG 57.449 39.130 0.00 0.00 0.00 2.44
147 148 4.469469 AACTCCATCCCTTTCCTTTTGA 57.531 40.909 0.00 0.00 0.00 2.69
148 149 3.767711 ACTCCATCCCTTTCCTTTTGAC 58.232 45.455 0.00 0.00 0.00 3.18
149 150 3.140144 ACTCCATCCCTTTCCTTTTGACA 59.860 43.478 0.00 0.00 0.00 3.58
150 151 4.202716 ACTCCATCCCTTTCCTTTTGACAT 60.203 41.667 0.00 0.00 0.00 3.06
151 152 4.344104 TCCATCCCTTTCCTTTTGACATC 58.656 43.478 0.00 0.00 0.00 3.06
152 153 3.448660 CCATCCCTTTCCTTTTGACATCC 59.551 47.826 0.00 0.00 0.00 3.51
153 154 3.169512 TCCCTTTCCTTTTGACATCCC 57.830 47.619 0.00 0.00 0.00 3.85
154 155 2.179427 CCCTTTCCTTTTGACATCCCC 58.821 52.381 0.00 0.00 0.00 4.81
155 156 2.492567 CCCTTTCCTTTTGACATCCCCA 60.493 50.000 0.00 0.00 0.00 4.96
156 157 3.444029 CCTTTCCTTTTGACATCCCCAT 58.556 45.455 0.00 0.00 0.00 4.00
157 158 3.196254 CCTTTCCTTTTGACATCCCCATG 59.804 47.826 0.00 0.00 35.92 3.66
158 159 1.851304 TCCTTTTGACATCCCCATGC 58.149 50.000 0.00 0.00 32.57 4.06
159 160 0.826062 CCTTTTGACATCCCCATGCC 59.174 55.000 0.00 0.00 32.57 4.40
160 161 0.457035 CTTTTGACATCCCCATGCCG 59.543 55.000 0.00 0.00 32.57 5.69
161 162 1.603236 TTTTGACATCCCCATGCCGC 61.603 55.000 0.00 0.00 32.57 6.53
162 163 4.504596 TGACATCCCCATGCCGCC 62.505 66.667 0.00 0.00 32.57 6.13
163 164 4.504596 GACATCCCCATGCCGCCA 62.505 66.667 0.00 0.00 32.57 5.69
164 165 4.820744 ACATCCCCATGCCGCCAC 62.821 66.667 0.00 0.00 32.57 5.01
165 166 4.818863 CATCCCCATGCCGCCACA 62.819 66.667 0.00 0.00 0.00 4.17
166 167 4.820744 ATCCCCATGCCGCCACAC 62.821 66.667 0.00 0.00 0.00 3.82
171 172 3.740397 CATGCCGCCACACCACAG 61.740 66.667 0.00 0.00 0.00 3.66
191 192 4.041762 GGGACATGGGGACGCCAA 62.042 66.667 16.09 0.00 0.00 4.52
192 193 2.034999 GGACATGGGGACGCCAAA 59.965 61.111 16.09 0.00 0.00 3.28
193 194 1.605165 GGACATGGGGACGCCAAAA 60.605 57.895 16.09 0.00 0.00 2.44
194 195 1.182385 GGACATGGGGACGCCAAAAA 61.182 55.000 16.09 0.00 0.00 1.94
216 217 7.698163 AAAAGGGATCCTATCACTATCAACT 57.302 36.000 12.58 0.00 43.68 3.16
217 218 8.798975 AAAAGGGATCCTATCACTATCAACTA 57.201 34.615 12.58 0.00 43.68 2.24
218 219 8.798975 AAAGGGATCCTATCACTATCAACTAA 57.201 34.615 12.58 0.00 43.68 2.24
219 220 8.980832 AAGGGATCCTATCACTATCAACTAAT 57.019 34.615 12.58 0.00 43.68 1.73
220 221 8.980832 AGGGATCCTATCACTATCAACTAATT 57.019 34.615 12.58 0.00 42.37 1.40
221 222 9.398921 AGGGATCCTATCACTATCAACTAATTT 57.601 33.333 12.58 0.00 42.37 1.82
222 223 9.442047 GGGATCCTATCACTATCAACTAATTTG 57.558 37.037 12.58 0.00 36.42 2.32
230 231 8.470040 TCACTATCAACTAATTTGTTACGACC 57.530 34.615 4.94 0.00 36.49 4.79
231 232 8.308931 TCACTATCAACTAATTTGTTACGACCT 58.691 33.333 4.94 0.00 36.49 3.85
232 233 9.577110 CACTATCAACTAATTTGTTACGACCTA 57.423 33.333 4.94 0.00 36.49 3.08
233 234 9.798994 ACTATCAACTAATTTGTTACGACCTAG 57.201 33.333 4.94 3.25 36.49 3.02
234 235 9.245962 CTATCAACTAATTTGTTACGACCTAGG 57.754 37.037 7.41 7.41 36.49 3.02
235 236 7.230849 TCAACTAATTTGTTACGACCTAGGA 57.769 36.000 17.98 0.00 36.49 2.94
236 237 7.844009 TCAACTAATTTGTTACGACCTAGGAT 58.156 34.615 17.98 2.77 36.49 3.24
237 238 8.970020 TCAACTAATTTGTTACGACCTAGGATA 58.030 33.333 17.98 1.69 36.49 2.59
238 239 9.590451 CAACTAATTTGTTACGACCTAGGATAA 57.410 33.333 17.98 8.21 0.00 1.75
243 244 8.828688 ATTTGTTACGACCTAGGATAATAAGC 57.171 34.615 17.98 0.00 0.00 3.09
244 245 7.592885 TTGTTACGACCTAGGATAATAAGCT 57.407 36.000 17.98 0.00 0.00 3.74
245 246 7.211966 TGTTACGACCTAGGATAATAAGCTC 57.788 40.000 17.98 0.00 0.00 4.09
246 247 6.774170 TGTTACGACCTAGGATAATAAGCTCA 59.226 38.462 17.98 2.08 0.00 4.26
247 248 7.450634 TGTTACGACCTAGGATAATAAGCTCAT 59.549 37.037 17.98 0.00 0.00 2.90
248 249 6.274157 ACGACCTAGGATAATAAGCTCATG 57.726 41.667 17.98 0.00 0.00 3.07
249 250 6.010850 ACGACCTAGGATAATAAGCTCATGA 58.989 40.000 17.98 0.00 0.00 3.07
250 251 6.151985 ACGACCTAGGATAATAAGCTCATGAG 59.848 42.308 17.98 18.84 0.00 2.90
265 266 4.825422 CTCATGAGCTTGGTCTTACTTCA 58.175 43.478 10.38 0.00 0.00 3.02
266 267 4.569943 TCATGAGCTTGGTCTTACTTCAC 58.430 43.478 0.00 0.00 0.00 3.18
267 268 3.402628 TGAGCTTGGTCTTACTTCACC 57.597 47.619 0.00 0.00 0.00 4.02
268 269 2.038557 TGAGCTTGGTCTTACTTCACCC 59.961 50.000 0.00 0.00 0.00 4.61
269 270 2.303311 GAGCTTGGTCTTACTTCACCCT 59.697 50.000 0.00 0.00 0.00 4.34
270 271 3.514309 GAGCTTGGTCTTACTTCACCCTA 59.486 47.826 0.00 0.00 0.00 3.53
271 272 3.908103 AGCTTGGTCTTACTTCACCCTAA 59.092 43.478 0.00 0.00 0.00 2.69
272 273 4.349930 AGCTTGGTCTTACTTCACCCTAAA 59.650 41.667 0.00 0.00 0.00 1.85
273 274 5.014228 AGCTTGGTCTTACTTCACCCTAAAT 59.986 40.000 0.00 0.00 0.00 1.40
274 275 5.123979 GCTTGGTCTTACTTCACCCTAAATG 59.876 44.000 0.00 0.00 0.00 2.32
275 276 6.442541 TTGGTCTTACTTCACCCTAAATGA 57.557 37.500 0.00 0.00 0.00 2.57
276 277 6.442541 TGGTCTTACTTCACCCTAAATGAA 57.557 37.500 0.00 0.00 34.89 2.57
277 278 6.843752 TGGTCTTACTTCACCCTAAATGAAA 58.156 36.000 0.00 0.00 35.70 2.69
278 279 6.940298 TGGTCTTACTTCACCCTAAATGAAAG 59.060 38.462 0.00 0.00 35.70 2.62
279 280 7.166167 GGTCTTACTTCACCCTAAATGAAAGA 58.834 38.462 0.00 0.00 35.70 2.52
280 281 7.664318 GGTCTTACTTCACCCTAAATGAAAGAA 59.336 37.037 0.00 0.00 35.70 2.52
281 282 8.722394 GTCTTACTTCACCCTAAATGAAAGAAG 58.278 37.037 0.00 0.00 35.70 2.85
282 283 8.656806 TCTTACTTCACCCTAAATGAAAGAAGA 58.343 33.333 0.00 0.00 36.00 2.87
283 284 8.617290 TTACTTCACCCTAAATGAAAGAAGAC 57.383 34.615 0.00 0.00 35.70 3.01
284 285 6.842676 ACTTCACCCTAAATGAAAGAAGACT 58.157 36.000 0.00 0.00 35.70 3.24
285 286 7.290813 ACTTCACCCTAAATGAAAGAAGACTT 58.709 34.615 0.00 0.00 35.70 3.01
286 287 7.445707 ACTTCACCCTAAATGAAAGAAGACTTC 59.554 37.037 7.14 7.14 35.70 3.01
287 288 6.238648 TCACCCTAAATGAAAGAAGACTTCC 58.761 40.000 11.67 0.00 35.05 3.46
288 289 6.003950 CACCCTAAATGAAAGAAGACTTCCA 58.996 40.000 11.67 3.51 35.05 3.53
289 290 6.660949 CACCCTAAATGAAAGAAGACTTCCAT 59.339 38.462 11.67 5.70 32.63 3.41
290 291 7.829211 CACCCTAAATGAAAGAAGACTTCCATA 59.171 37.037 11.67 0.00 30.08 2.74
291 292 8.560903 ACCCTAAATGAAAGAAGACTTCCATAT 58.439 33.333 11.67 0.00 30.08 1.78
292 293 9.061435 CCCTAAATGAAAGAAGACTTCCATATC 57.939 37.037 11.67 6.00 30.08 1.63
293 294 9.061435 CCTAAATGAAAGAAGACTTCCATATCC 57.939 37.037 11.67 0.00 30.08 2.59
294 295 9.618890 CTAAATGAAAGAAGACTTCCATATCCA 57.381 33.333 11.67 2.84 30.08 3.41
295 296 8.884124 AAATGAAAGAAGACTTCCATATCCAA 57.116 30.769 11.67 0.00 30.08 3.53
296 297 8.517062 AATGAAAGAAGACTTCCATATCCAAG 57.483 34.615 11.67 0.00 30.08 3.61
297 298 7.020827 TGAAAGAAGACTTCCATATCCAAGT 57.979 36.000 11.67 0.00 35.05 3.16
298 299 7.461749 TGAAAGAAGACTTCCATATCCAAGTT 58.538 34.615 11.67 0.00 35.05 2.66
299 300 7.944554 TGAAAGAAGACTTCCATATCCAAGTTT 59.055 33.333 11.67 2.02 35.05 2.66
300 301 9.449719 GAAAGAAGACTTCCATATCCAAGTTTA 57.550 33.333 11.67 0.00 35.05 2.01
301 302 9.454859 AAAGAAGACTTCCATATCCAAGTTTAG 57.545 33.333 11.67 0.00 35.05 1.85
302 303 7.051000 AGAAGACTTCCATATCCAAGTTTAGC 58.949 38.462 11.67 0.00 32.83 3.09
303 304 6.567602 AGACTTCCATATCCAAGTTTAGCT 57.432 37.500 0.00 0.00 32.83 3.32
304 305 6.587273 AGACTTCCATATCCAAGTTTAGCTC 58.413 40.000 0.00 0.00 32.83 4.09
305 306 6.156949 AGACTTCCATATCCAAGTTTAGCTCA 59.843 38.462 0.00 0.00 32.83 4.26
306 307 6.352516 ACTTCCATATCCAAGTTTAGCTCAG 58.647 40.000 0.00 0.00 27.81 3.35
307 308 6.156949 ACTTCCATATCCAAGTTTAGCTCAGA 59.843 38.462 0.00 0.00 27.81 3.27
308 309 5.918608 TCCATATCCAAGTTTAGCTCAGAC 58.081 41.667 0.00 0.00 0.00 3.51
309 310 4.747108 CCATATCCAAGTTTAGCTCAGACG 59.253 45.833 0.00 0.00 0.00 4.18
310 311 3.963428 ATCCAAGTTTAGCTCAGACGT 57.037 42.857 0.00 0.00 0.00 4.34
311 312 6.461092 CCATATCCAAGTTTAGCTCAGACGTA 60.461 42.308 0.00 0.00 0.00 3.57
312 313 4.436242 TCCAAGTTTAGCTCAGACGTAG 57.564 45.455 0.00 0.00 0.00 3.51
313 314 2.924290 CCAAGTTTAGCTCAGACGTAGC 59.076 50.000 0.35 0.35 40.40 3.58
318 319 2.888863 GCTCAGACGTAGCTGCCT 59.111 61.111 0.00 0.00 37.01 4.75
319 320 1.216710 GCTCAGACGTAGCTGCCTT 59.783 57.895 0.00 0.00 37.01 4.35
320 321 0.804156 GCTCAGACGTAGCTGCCTTC 60.804 60.000 0.00 0.00 37.01 3.46
321 322 0.814457 CTCAGACGTAGCTGCCTTCT 59.186 55.000 0.00 0.00 35.86 2.85
322 323 1.203523 CTCAGACGTAGCTGCCTTCTT 59.796 52.381 0.00 0.00 35.86 2.52
323 324 1.618837 TCAGACGTAGCTGCCTTCTTT 59.381 47.619 0.00 0.00 35.86 2.52
324 325 2.037251 TCAGACGTAGCTGCCTTCTTTT 59.963 45.455 0.00 0.00 35.86 2.27
325 326 2.808543 CAGACGTAGCTGCCTTCTTTTT 59.191 45.455 0.00 0.00 0.00 1.94
326 327 2.808543 AGACGTAGCTGCCTTCTTTTTG 59.191 45.455 0.00 0.00 0.00 2.44
327 328 1.880027 ACGTAGCTGCCTTCTTTTTGG 59.120 47.619 0.00 0.00 0.00 3.28
328 329 1.200020 CGTAGCTGCCTTCTTTTTGGG 59.800 52.381 0.00 0.00 0.00 4.12
329 330 1.067565 GTAGCTGCCTTCTTTTTGGGC 60.068 52.381 0.00 0.00 45.45 5.36
332 333 4.653555 GCCTTCTTTTTGGGCGTG 57.346 55.556 0.00 0.00 36.37 5.34
333 334 2.037871 GCCTTCTTTTTGGGCGTGA 58.962 52.632 0.00 0.00 36.37 4.35
334 335 0.387565 GCCTTCTTTTTGGGCGTGAA 59.612 50.000 0.00 0.00 36.37 3.18
335 336 1.602920 GCCTTCTTTTTGGGCGTGAAG 60.603 52.381 0.00 0.00 36.37 3.02
336 337 1.953686 CCTTCTTTTTGGGCGTGAAGA 59.046 47.619 0.00 0.00 37.03 2.87
337 338 2.360801 CCTTCTTTTTGGGCGTGAAGAA 59.639 45.455 0.00 0.00 37.03 2.52
338 339 3.632189 CTTCTTTTTGGGCGTGAAGAAG 58.368 45.455 13.17 13.17 44.75 2.85
339 340 2.650322 TCTTTTTGGGCGTGAAGAAGT 58.350 42.857 0.00 0.00 0.00 3.01
340 341 2.357637 TCTTTTTGGGCGTGAAGAAGTG 59.642 45.455 0.00 0.00 0.00 3.16
341 342 1.757682 TTTTGGGCGTGAAGAAGTGT 58.242 45.000 0.00 0.00 0.00 3.55
342 343 1.305201 TTTGGGCGTGAAGAAGTGTC 58.695 50.000 0.00 0.00 0.00 3.67
343 344 0.179234 TTGGGCGTGAAGAAGTGTCA 59.821 50.000 0.00 0.00 0.00 3.58
344 345 0.179234 TGGGCGTGAAGAAGTGTCAA 59.821 50.000 0.00 0.00 0.00 3.18
345 346 1.305201 GGGCGTGAAGAAGTGTCAAA 58.695 50.000 0.00 0.00 0.00 2.69
346 347 1.002792 GGGCGTGAAGAAGTGTCAAAC 60.003 52.381 0.00 0.00 0.00 2.93
347 348 1.002792 GGCGTGAAGAAGTGTCAAACC 60.003 52.381 0.00 0.00 0.00 3.27
348 349 1.668751 GCGTGAAGAAGTGTCAAACCA 59.331 47.619 0.00 0.00 0.00 3.67
349 350 2.096819 GCGTGAAGAAGTGTCAAACCAA 59.903 45.455 0.00 0.00 0.00 3.67
350 351 3.426963 GCGTGAAGAAGTGTCAAACCAAA 60.427 43.478 0.00 0.00 0.00 3.28
351 352 4.728534 CGTGAAGAAGTGTCAAACCAAAA 58.271 39.130 0.00 0.00 0.00 2.44
352 353 5.339990 CGTGAAGAAGTGTCAAACCAAAAT 58.660 37.500 0.00 0.00 0.00 1.82
353 354 6.491394 CGTGAAGAAGTGTCAAACCAAAATA 58.509 36.000 0.00 0.00 0.00 1.40
354 355 6.413818 CGTGAAGAAGTGTCAAACCAAAATAC 59.586 38.462 0.00 0.00 0.00 1.89
355 356 6.695713 GTGAAGAAGTGTCAAACCAAAATACC 59.304 38.462 0.00 0.00 0.00 2.73
356 357 5.784578 AGAAGTGTCAAACCAAAATACCC 57.215 39.130 0.00 0.00 0.00 3.69
357 358 5.205056 AGAAGTGTCAAACCAAAATACCCA 58.795 37.500 0.00 0.00 0.00 4.51
358 359 5.659079 AGAAGTGTCAAACCAAAATACCCAA 59.341 36.000 0.00 0.00 0.00 4.12
359 360 6.326323 AGAAGTGTCAAACCAAAATACCCAAT 59.674 34.615 0.00 0.00 0.00 3.16
360 361 7.507616 AGAAGTGTCAAACCAAAATACCCAATA 59.492 33.333 0.00 0.00 0.00 1.90
361 362 7.604657 AGTGTCAAACCAAAATACCCAATAA 57.395 32.000 0.00 0.00 0.00 1.40
362 363 7.666623 AGTGTCAAACCAAAATACCCAATAAG 58.333 34.615 0.00 0.00 0.00 1.73
363 364 6.367695 GTGTCAAACCAAAATACCCAATAAGC 59.632 38.462 0.00 0.00 0.00 3.09
364 365 6.042093 TGTCAAACCAAAATACCCAATAAGCA 59.958 34.615 0.00 0.00 0.00 3.91
365 366 7.102993 GTCAAACCAAAATACCCAATAAGCAT 58.897 34.615 0.00 0.00 0.00 3.79
366 367 8.254508 GTCAAACCAAAATACCCAATAAGCATA 58.745 33.333 0.00 0.00 0.00 3.14
367 368 8.816894 TCAAACCAAAATACCCAATAAGCATAA 58.183 29.630 0.00 0.00 0.00 1.90
368 369 9.097257 CAAACCAAAATACCCAATAAGCATAAG 57.903 33.333 0.00 0.00 0.00 1.73
369 370 6.816136 ACCAAAATACCCAATAAGCATAAGC 58.184 36.000 0.00 0.00 42.56 3.09
370 371 6.382570 ACCAAAATACCCAATAAGCATAAGCA 59.617 34.615 0.00 0.00 45.49 3.91
371 372 7.071071 ACCAAAATACCCAATAAGCATAAGCAT 59.929 33.333 0.00 0.00 45.49 3.79
372 373 7.933033 CCAAAATACCCAATAAGCATAAGCATT 59.067 33.333 0.00 0.00 45.49 3.56
373 374 9.979578 CAAAATACCCAATAAGCATAAGCATTA 57.020 29.630 0.00 0.00 45.49 1.90
375 376 5.712152 ACCCAATAAGCATAAGCATTAGC 57.288 39.130 0.00 0.00 45.49 3.09
389 390 2.948315 GCATTAGCTCTCCCTGAAAAGG 59.052 50.000 0.00 0.00 37.91 3.11
390 391 3.370953 GCATTAGCTCTCCCTGAAAAGGA 60.371 47.826 0.00 0.00 37.91 3.36
397 398 3.274095 CTCCCTGAAAAGGAGGTGATC 57.726 52.381 0.00 0.00 46.14 2.92
406 407 2.512515 GAGGTGATCCAGCCGCAC 60.513 66.667 0.00 0.00 35.89 5.34
408 409 4.101448 GGTGATCCAGCCGCACCT 62.101 66.667 0.00 0.00 46.56 4.00
409 410 2.045926 GTGATCCAGCCGCACCTT 60.046 61.111 0.00 0.00 0.00 3.50
410 411 2.109126 GTGATCCAGCCGCACCTTC 61.109 63.158 0.00 0.00 0.00 3.46
411 412 2.514824 GATCCAGCCGCACCTTCC 60.515 66.667 0.00 0.00 0.00 3.46
412 413 3.329542 GATCCAGCCGCACCTTCCA 62.330 63.158 0.00 0.00 0.00 3.53
413 414 3.335356 ATCCAGCCGCACCTTCCAG 62.335 63.158 0.00 0.00 0.00 3.86
414 415 4.335647 CCAGCCGCACCTTCCAGT 62.336 66.667 0.00 0.00 0.00 4.00
415 416 2.662596 CAGCCGCACCTTCCAGTA 59.337 61.111 0.00 0.00 0.00 2.74
416 417 1.741770 CAGCCGCACCTTCCAGTAC 60.742 63.158 0.00 0.00 0.00 2.73
417 418 2.813908 GCCGCACCTTCCAGTACG 60.814 66.667 0.00 0.00 0.00 3.67
418 419 2.125673 CCGCACCTTCCAGTACGG 60.126 66.667 0.00 0.00 40.12 4.02
419 420 2.813908 CGCACCTTCCAGTACGGC 60.814 66.667 0.00 0.00 33.14 5.68
420 421 2.663196 GCACCTTCCAGTACGGCT 59.337 61.111 0.00 0.00 33.14 5.52
421 422 1.895238 GCACCTTCCAGTACGGCTA 59.105 57.895 0.00 0.00 33.14 3.93
422 423 0.459759 GCACCTTCCAGTACGGCTAC 60.460 60.000 0.00 0.00 33.14 3.58
423 424 0.175073 CACCTTCCAGTACGGCTACC 59.825 60.000 0.00 0.00 33.14 3.18
424 425 0.040794 ACCTTCCAGTACGGCTACCT 59.959 55.000 0.00 0.00 33.14 3.08
425 426 1.192428 CCTTCCAGTACGGCTACCTT 58.808 55.000 0.00 0.00 33.14 3.50
426 427 1.134788 CCTTCCAGTACGGCTACCTTG 60.135 57.143 0.00 0.00 33.14 3.61
427 428 1.549170 CTTCCAGTACGGCTACCTTGT 59.451 52.381 0.00 0.00 33.14 3.16
428 429 1.636148 TCCAGTACGGCTACCTTGTT 58.364 50.000 0.00 0.00 33.14 2.83
429 430 2.806434 TCCAGTACGGCTACCTTGTTA 58.194 47.619 0.00 0.00 33.14 2.41
430 431 2.493278 TCCAGTACGGCTACCTTGTTAC 59.507 50.000 0.00 0.00 33.14 2.50
431 432 2.523015 CAGTACGGCTACCTTGTTACG 58.477 52.381 0.00 0.00 0.00 3.18
432 433 2.162208 CAGTACGGCTACCTTGTTACGA 59.838 50.000 0.00 0.00 0.00 3.43
433 434 2.162408 AGTACGGCTACCTTGTTACGAC 59.838 50.000 0.00 0.00 0.00 4.34
434 435 1.251251 ACGGCTACCTTGTTACGACT 58.749 50.000 0.00 0.00 0.00 4.18
435 436 1.615392 ACGGCTACCTTGTTACGACTT 59.385 47.619 0.00 0.00 0.00 3.01
436 437 2.257034 CGGCTACCTTGTTACGACTTC 58.743 52.381 0.00 0.00 0.00 3.01
437 438 2.352030 CGGCTACCTTGTTACGACTTCA 60.352 50.000 0.00 0.00 0.00 3.02
438 439 2.991866 GGCTACCTTGTTACGACTTCAC 59.008 50.000 0.00 0.00 0.00 3.18
439 440 3.305881 GGCTACCTTGTTACGACTTCACT 60.306 47.826 0.00 0.00 0.00 3.41
440 441 3.919197 GCTACCTTGTTACGACTTCACTC 59.081 47.826 0.00 0.00 0.00 3.51
441 442 3.382048 ACCTTGTTACGACTTCACTCC 57.618 47.619 0.00 0.00 0.00 3.85
442 443 2.696707 ACCTTGTTACGACTTCACTCCA 59.303 45.455 0.00 0.00 0.00 3.86
443 444 3.243771 ACCTTGTTACGACTTCACTCCAG 60.244 47.826 0.00 0.00 0.00 3.86
444 445 3.243771 CCTTGTTACGACTTCACTCCAGT 60.244 47.826 0.00 0.00 0.00 4.00
445 446 3.637998 TGTTACGACTTCACTCCAGTC 57.362 47.619 0.00 0.00 37.84 3.51
1457 1469 9.440773 CCTAACATTCTTGCAGAATATATAGCA 57.559 33.333 9.96 3.97 42.67 3.49
2338 6269 9.893305 TGAGAAAATTAACTCGGAAAGAAATTC 57.107 29.630 7.12 0.00 36.11 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.005539 GGGCTGTGAGGGCTCTCA 61.006 66.667 13.72 13.72 46.81 3.27
8 9 3.005539 TGGGCTGTGAGGGCTCTC 61.006 66.667 6.66 6.66 40.36 3.20
9 10 3.007920 CTGGGCTGTGAGGGCTCT 61.008 66.667 0.00 0.00 0.00 4.09
10 11 4.106925 CCTGGGCTGTGAGGGCTC 62.107 72.222 0.00 0.00 0.00 4.70
13 14 4.729918 GTGCCTGGGCTGTGAGGG 62.730 72.222 13.05 0.00 42.51 4.30
14 15 3.496309 TTGTGCCTGGGCTGTGAGG 62.496 63.158 13.05 0.00 42.51 3.86
15 16 2.113774 TTGTGCCTGGGCTGTGAG 59.886 61.111 13.05 0.00 42.51 3.51
16 17 2.203337 GTTGTGCCTGGGCTGTGA 60.203 61.111 13.05 0.00 42.51 3.58
17 18 3.663176 CGTTGTGCCTGGGCTGTG 61.663 66.667 13.05 0.00 42.51 3.66
18 19 3.872603 TCGTTGTGCCTGGGCTGT 61.873 61.111 13.05 0.00 42.51 4.40
19 20 3.357079 GTCGTTGTGCCTGGGCTG 61.357 66.667 13.05 0.00 42.51 4.85
20 21 4.988598 CGTCGTTGTGCCTGGGCT 62.989 66.667 13.05 0.00 42.51 5.19
23 24 2.128853 AATTGCGTCGTTGTGCCTGG 62.129 55.000 0.00 0.00 0.00 4.45
24 25 0.515127 TAATTGCGTCGTTGTGCCTG 59.485 50.000 0.00 0.00 0.00 4.85
25 26 1.396996 GATAATTGCGTCGTTGTGCCT 59.603 47.619 0.00 0.00 0.00 4.75
26 27 1.129624 TGATAATTGCGTCGTTGTGCC 59.870 47.619 0.00 0.00 0.00 5.01
27 28 2.430956 CTGATAATTGCGTCGTTGTGC 58.569 47.619 0.00 0.00 0.00 4.57
28 29 2.223021 CCCTGATAATTGCGTCGTTGTG 60.223 50.000 0.00 0.00 0.00 3.33
29 30 2.006888 CCCTGATAATTGCGTCGTTGT 58.993 47.619 0.00 0.00 0.00 3.32
30 31 1.330521 CCCCTGATAATTGCGTCGTTG 59.669 52.381 0.00 0.00 0.00 4.10
31 32 1.663695 CCCCTGATAATTGCGTCGTT 58.336 50.000 0.00 0.00 0.00 3.85
32 33 0.814010 GCCCCTGATAATTGCGTCGT 60.814 55.000 0.00 0.00 0.00 4.34
33 34 1.831389 CGCCCCTGATAATTGCGTCG 61.831 60.000 0.00 0.00 40.33 5.12
34 35 1.941812 CGCCCCTGATAATTGCGTC 59.058 57.895 0.00 0.00 40.33 5.19
35 36 2.186826 GCGCCCCTGATAATTGCGT 61.187 57.895 0.00 0.00 46.39 5.24
37 38 2.639286 CGCGCCCCTGATAATTGC 59.361 61.111 0.00 0.00 0.00 3.56
38 39 1.845809 GAGCGCGCCCCTGATAATTG 61.846 60.000 30.33 0.00 0.00 2.32
39 40 1.598130 GAGCGCGCCCCTGATAATT 60.598 57.895 30.33 4.23 0.00 1.40
40 41 1.185618 TAGAGCGCGCCCCTGATAAT 61.186 55.000 30.33 5.17 0.00 1.28
41 42 1.830847 TAGAGCGCGCCCCTGATAA 60.831 57.895 30.33 7.34 0.00 1.75
42 43 2.203437 TAGAGCGCGCCCCTGATA 60.203 61.111 30.33 7.73 0.00 2.15
43 44 3.917760 GTAGAGCGCGCCCCTGAT 61.918 66.667 30.33 8.00 0.00 2.90
49 50 4.129737 TCAGTGGTAGAGCGCGCC 62.130 66.667 30.33 19.60 0.00 6.53
50 51 2.580867 CTCAGTGGTAGAGCGCGC 60.581 66.667 26.66 26.66 0.00 6.86
55 56 3.257127 GGGCTATTAGCTCAGTGGTAGAG 59.743 52.174 15.02 0.00 42.59 2.43
56 57 3.231818 GGGCTATTAGCTCAGTGGTAGA 58.768 50.000 15.02 0.00 42.59 2.59
57 58 3.669251 GGGCTATTAGCTCAGTGGTAG 57.331 52.381 15.02 0.00 42.59 3.18
65 66 1.355066 GCGCGATGGGCTATTAGCTC 61.355 60.000 12.10 12.04 43.59 4.09
66 67 1.374758 GCGCGATGGGCTATTAGCT 60.375 57.895 12.10 0.00 41.99 3.32
67 68 2.730672 CGCGCGATGGGCTATTAGC 61.731 63.158 28.94 7.16 41.46 3.09
68 69 2.094659 CCGCGCGATGGGCTATTAG 61.095 63.158 34.63 5.49 39.38 1.73
69 70 2.048597 CCGCGCGATGGGCTATTA 60.049 61.111 34.63 0.00 39.38 0.98
70 71 4.988598 CCCGCGCGATGGGCTATT 62.989 66.667 34.63 0.00 40.47 1.73
91 92 2.308722 TAGCAGGCCTCCCTTTGGG 61.309 63.158 0.00 0.00 46.11 4.12
92 93 1.077429 GTAGCAGGCCTCCCTTTGG 60.077 63.158 0.00 0.00 40.33 3.28
93 94 1.450312 CGTAGCAGGCCTCCCTTTG 60.450 63.158 0.00 0.00 40.33 2.77
94 95 2.990479 CGTAGCAGGCCTCCCTTT 59.010 61.111 0.00 0.00 40.33 3.11
111 112 2.223711 TGGAGTTTTTCTCGCTTTTGGC 60.224 45.455 0.00 0.00 43.60 4.52
112 113 3.708563 TGGAGTTTTTCTCGCTTTTGG 57.291 42.857 0.00 0.00 43.60 3.28
113 114 4.229876 GGATGGAGTTTTTCTCGCTTTTG 58.770 43.478 0.00 0.00 43.60 2.44
114 115 3.255888 GGGATGGAGTTTTTCTCGCTTTT 59.744 43.478 0.00 0.00 43.60 2.27
115 116 2.820197 GGGATGGAGTTTTTCTCGCTTT 59.180 45.455 0.00 0.00 43.60 3.51
116 117 2.040412 AGGGATGGAGTTTTTCTCGCTT 59.960 45.455 0.00 0.00 43.60 4.68
117 118 1.630878 AGGGATGGAGTTTTTCTCGCT 59.369 47.619 0.00 0.00 43.60 4.93
118 119 2.115343 AGGGATGGAGTTTTTCTCGC 57.885 50.000 0.00 0.00 43.60 5.03
119 120 3.440522 GGAAAGGGATGGAGTTTTTCTCG 59.559 47.826 0.00 0.00 43.60 4.04
120 121 4.667573 AGGAAAGGGATGGAGTTTTTCTC 58.332 43.478 0.00 0.00 42.07 2.87
121 122 4.749048 AGGAAAGGGATGGAGTTTTTCT 57.251 40.909 0.00 0.00 0.00 2.52
122 123 5.808366 AAAGGAAAGGGATGGAGTTTTTC 57.192 39.130 0.00 0.00 0.00 2.29
123 124 5.665360 TCAAAAGGAAAGGGATGGAGTTTTT 59.335 36.000 0.00 0.00 0.00 1.94
124 125 5.070446 GTCAAAAGGAAAGGGATGGAGTTTT 59.930 40.000 0.00 0.00 0.00 2.43
125 126 4.588951 GTCAAAAGGAAAGGGATGGAGTTT 59.411 41.667 0.00 0.00 0.00 2.66
126 127 4.152647 GTCAAAAGGAAAGGGATGGAGTT 58.847 43.478 0.00 0.00 0.00 3.01
127 128 3.140144 TGTCAAAAGGAAAGGGATGGAGT 59.860 43.478 0.00 0.00 0.00 3.85
128 129 3.766545 TGTCAAAAGGAAAGGGATGGAG 58.233 45.455 0.00 0.00 0.00 3.86
129 130 3.893753 TGTCAAAAGGAAAGGGATGGA 57.106 42.857 0.00 0.00 0.00 3.41
130 131 3.448660 GGATGTCAAAAGGAAAGGGATGG 59.551 47.826 0.00 0.00 0.00 3.51
131 132 3.448660 GGGATGTCAAAAGGAAAGGGATG 59.551 47.826 0.00 0.00 0.00 3.51
132 133 3.566553 GGGGATGTCAAAAGGAAAGGGAT 60.567 47.826 0.00 0.00 0.00 3.85
133 134 2.225267 GGGGATGTCAAAAGGAAAGGGA 60.225 50.000 0.00 0.00 0.00 4.20
134 135 2.179427 GGGGATGTCAAAAGGAAAGGG 58.821 52.381 0.00 0.00 0.00 3.95
135 136 2.888212 TGGGGATGTCAAAAGGAAAGG 58.112 47.619 0.00 0.00 0.00 3.11
136 137 3.368739 GCATGGGGATGTCAAAAGGAAAG 60.369 47.826 0.00 0.00 0.00 2.62
137 138 2.566724 GCATGGGGATGTCAAAAGGAAA 59.433 45.455 0.00 0.00 0.00 3.13
138 139 2.178580 GCATGGGGATGTCAAAAGGAA 58.821 47.619 0.00 0.00 0.00 3.36
139 140 1.619432 GGCATGGGGATGTCAAAAGGA 60.619 52.381 0.00 0.00 0.00 3.36
140 141 0.826062 GGCATGGGGATGTCAAAAGG 59.174 55.000 0.00 0.00 0.00 3.11
141 142 0.457035 CGGCATGGGGATGTCAAAAG 59.543 55.000 0.00 0.00 0.00 2.27
142 143 1.603236 GCGGCATGGGGATGTCAAAA 61.603 55.000 0.00 0.00 0.00 2.44
143 144 2.051518 GCGGCATGGGGATGTCAAA 61.052 57.895 0.00 0.00 0.00 2.69
144 145 2.440065 GCGGCATGGGGATGTCAA 60.440 61.111 0.00 0.00 0.00 3.18
145 146 4.504596 GGCGGCATGGGGATGTCA 62.505 66.667 3.07 0.00 0.00 3.58
146 147 4.504596 TGGCGGCATGGGGATGTC 62.505 66.667 7.97 0.00 0.00 3.06
147 148 4.820744 GTGGCGGCATGGGGATGT 62.821 66.667 17.19 0.00 0.00 3.06
148 149 4.818863 TGTGGCGGCATGGGGATG 62.819 66.667 17.19 0.00 0.00 3.51
149 150 4.820744 GTGTGGCGGCATGGGGAT 62.821 66.667 17.19 0.00 0.00 3.85
154 155 3.740397 CTGTGGTGTGGCGGCATG 61.740 66.667 17.19 0.00 0.00 4.06
174 175 3.577334 TTTGGCGTCCCCATGTCCC 62.577 63.158 0.00 0.00 44.89 4.46
175 176 1.182385 TTTTTGGCGTCCCCATGTCC 61.182 55.000 0.00 0.00 44.89 4.02
176 177 2.346597 TTTTTGGCGTCCCCATGTC 58.653 52.632 0.00 0.00 44.89 3.06
177 178 4.609098 TTTTTGGCGTCCCCATGT 57.391 50.000 0.00 0.00 44.89 3.21
191 192 8.107196 AGTTGATAGTGATAGGATCCCTTTTT 57.893 34.615 8.55 0.00 34.61 1.94
192 193 7.698163 AGTTGATAGTGATAGGATCCCTTTT 57.302 36.000 8.55 0.00 34.61 2.27
193 194 8.798975 TTAGTTGATAGTGATAGGATCCCTTT 57.201 34.615 8.55 0.00 34.61 3.11
194 195 8.980832 ATTAGTTGATAGTGATAGGATCCCTT 57.019 34.615 8.55 0.00 34.61 3.95
195 196 8.980832 AATTAGTTGATAGTGATAGGATCCCT 57.019 34.615 8.55 0.00 37.71 4.20
196 197 9.442047 CAAATTAGTTGATAGTGATAGGATCCC 57.558 37.037 8.55 0.00 39.87 3.85
204 205 9.095065 GGTCGTAACAAATTAGTTGATAGTGAT 57.905 33.333 0.00 0.00 39.87 3.06
205 206 8.308931 AGGTCGTAACAAATTAGTTGATAGTGA 58.691 33.333 0.00 0.00 39.87 3.41
206 207 8.475331 AGGTCGTAACAAATTAGTTGATAGTG 57.525 34.615 0.00 0.00 39.87 2.74
207 208 9.798994 CTAGGTCGTAACAAATTAGTTGATAGT 57.201 33.333 0.00 0.00 39.87 2.12
208 209 9.245962 CCTAGGTCGTAACAAATTAGTTGATAG 57.754 37.037 0.00 0.00 39.87 2.08
209 210 8.970020 TCCTAGGTCGTAACAAATTAGTTGATA 58.030 33.333 9.08 0.00 39.87 2.15
210 211 7.844009 TCCTAGGTCGTAACAAATTAGTTGAT 58.156 34.615 9.08 0.00 39.87 2.57
211 212 7.230849 TCCTAGGTCGTAACAAATTAGTTGA 57.769 36.000 9.08 0.00 39.87 3.18
212 213 9.590451 TTATCCTAGGTCGTAACAAATTAGTTG 57.410 33.333 9.08 0.00 43.43 3.16
217 218 9.269453 GCTTATTATCCTAGGTCGTAACAAATT 57.731 33.333 9.08 0.00 0.00 1.82
218 219 8.648693 AGCTTATTATCCTAGGTCGTAACAAAT 58.351 33.333 9.08 0.00 0.00 2.32
219 220 8.015185 AGCTTATTATCCTAGGTCGTAACAAA 57.985 34.615 9.08 5.19 0.00 2.83
220 221 7.286087 TGAGCTTATTATCCTAGGTCGTAACAA 59.714 37.037 9.08 2.36 38.81 2.83
221 222 6.774170 TGAGCTTATTATCCTAGGTCGTAACA 59.226 38.462 9.08 0.00 38.81 2.41
222 223 7.211966 TGAGCTTATTATCCTAGGTCGTAAC 57.788 40.000 9.08 0.00 38.81 2.50
223 224 7.668469 TCATGAGCTTATTATCCTAGGTCGTAA 59.332 37.037 9.08 7.48 38.81 3.18
224 225 7.173032 TCATGAGCTTATTATCCTAGGTCGTA 58.827 38.462 9.08 0.00 38.81 3.43
225 226 6.010850 TCATGAGCTTATTATCCTAGGTCGT 58.989 40.000 9.08 0.00 38.81 4.34
226 227 6.516739 TCATGAGCTTATTATCCTAGGTCG 57.483 41.667 9.08 0.00 38.81 4.79
243 244 4.629200 GTGAAGTAAGACCAAGCTCATGAG 59.371 45.833 18.84 18.84 0.00 2.90
244 245 4.563580 GGTGAAGTAAGACCAAGCTCATGA 60.564 45.833 0.00 0.00 31.97 3.07
245 246 3.686726 GGTGAAGTAAGACCAAGCTCATG 59.313 47.826 0.00 0.00 31.97 3.07
246 247 3.307762 GGGTGAAGTAAGACCAAGCTCAT 60.308 47.826 0.00 0.00 33.48 2.90
247 248 2.038557 GGGTGAAGTAAGACCAAGCTCA 59.961 50.000 0.00 0.00 33.48 4.26
248 249 2.303311 AGGGTGAAGTAAGACCAAGCTC 59.697 50.000 0.00 0.00 33.48 4.09
249 250 2.339769 AGGGTGAAGTAAGACCAAGCT 58.660 47.619 0.00 0.00 33.48 3.74
250 251 2.861147 AGGGTGAAGTAAGACCAAGC 57.139 50.000 0.00 0.00 33.48 4.01
251 252 6.472887 TCATTTAGGGTGAAGTAAGACCAAG 58.527 40.000 0.00 0.00 33.48 3.61
252 253 6.442541 TCATTTAGGGTGAAGTAAGACCAA 57.557 37.500 0.00 0.00 33.48 3.67
253 254 6.442541 TTCATTTAGGGTGAAGTAAGACCA 57.557 37.500 0.00 0.00 33.48 4.02
254 255 7.166167 TCTTTCATTTAGGGTGAAGTAAGACC 58.834 38.462 0.00 0.00 36.96 3.85
255 256 8.617290 TTCTTTCATTTAGGGTGAAGTAAGAC 57.383 34.615 0.00 0.00 36.96 3.01
256 257 8.656806 TCTTCTTTCATTTAGGGTGAAGTAAGA 58.343 33.333 0.00 9.17 36.67 2.10
257 258 8.722394 GTCTTCTTTCATTTAGGGTGAAGTAAG 58.278 37.037 0.00 0.00 36.96 2.34
258 259 8.437575 AGTCTTCTTTCATTTAGGGTGAAGTAA 58.562 33.333 0.00 0.00 36.96 2.24
259 260 7.974504 AGTCTTCTTTCATTTAGGGTGAAGTA 58.025 34.615 0.00 0.00 36.96 2.24
260 261 6.842676 AGTCTTCTTTCATTTAGGGTGAAGT 58.157 36.000 0.00 0.00 36.96 3.01
261 262 7.094592 GGAAGTCTTCTTTCATTTAGGGTGAAG 60.095 40.741 12.31 0.00 36.96 3.02
262 263 6.715264 GGAAGTCTTCTTTCATTTAGGGTGAA 59.285 38.462 12.31 0.00 33.64 3.18
263 264 6.183361 TGGAAGTCTTCTTTCATTTAGGGTGA 60.183 38.462 12.31 0.00 34.57 4.02
264 265 6.003950 TGGAAGTCTTCTTTCATTTAGGGTG 58.996 40.000 12.31 0.00 34.57 4.61
265 266 6.200878 TGGAAGTCTTCTTTCATTTAGGGT 57.799 37.500 12.31 0.00 34.57 4.34
266 267 8.986929 ATATGGAAGTCTTCTTTCATTTAGGG 57.013 34.615 12.31 0.00 44.78 3.53
267 268 9.061435 GGATATGGAAGTCTTCTTTCATTTAGG 57.939 37.037 12.31 0.00 44.78 2.69
268 269 9.618890 TGGATATGGAAGTCTTCTTTCATTTAG 57.381 33.333 12.31 0.00 44.78 1.85
269 270 9.973661 TTGGATATGGAAGTCTTCTTTCATTTA 57.026 29.630 12.31 0.00 44.78 1.40
270 271 8.884124 TTGGATATGGAAGTCTTCTTTCATTT 57.116 30.769 12.31 3.40 44.78 2.32
271 272 8.112183 ACTTGGATATGGAAGTCTTCTTTCATT 58.888 33.333 12.31 0.44 44.78 2.57
273 274 7.020827 ACTTGGATATGGAAGTCTTCTTTCA 57.979 36.000 12.31 2.81 42.55 2.69
274 275 7.929941 AACTTGGATATGGAAGTCTTCTTTC 57.070 36.000 12.31 4.77 33.64 2.62
275 276 9.454859 CTAAACTTGGATATGGAAGTCTTCTTT 57.545 33.333 12.31 4.01 33.64 2.52
276 277 7.554476 GCTAAACTTGGATATGGAAGTCTTCTT 59.446 37.037 12.31 3.62 36.51 2.52
277 278 7.051000 GCTAAACTTGGATATGGAAGTCTTCT 58.949 38.462 12.31 0.00 31.02 2.85
278 279 7.051000 AGCTAAACTTGGATATGGAAGTCTTC 58.949 38.462 3.80 3.80 31.02 2.87
279 280 6.963322 AGCTAAACTTGGATATGGAAGTCTT 58.037 36.000 0.00 0.00 31.02 3.01
280 281 6.156949 TGAGCTAAACTTGGATATGGAAGTCT 59.843 38.462 0.00 0.00 31.02 3.24
281 282 6.349300 TGAGCTAAACTTGGATATGGAAGTC 58.651 40.000 0.00 0.00 31.02 3.01
282 283 6.156949 TCTGAGCTAAACTTGGATATGGAAGT 59.843 38.462 0.00 0.00 33.75 3.01
283 284 6.481644 GTCTGAGCTAAACTTGGATATGGAAG 59.518 42.308 0.00 0.00 0.00 3.46
284 285 6.349300 GTCTGAGCTAAACTTGGATATGGAA 58.651 40.000 0.00 0.00 0.00 3.53
285 286 5.451937 CGTCTGAGCTAAACTTGGATATGGA 60.452 44.000 0.00 0.00 0.00 3.41
286 287 4.747108 CGTCTGAGCTAAACTTGGATATGG 59.253 45.833 0.00 0.00 0.00 2.74
287 288 5.352284 ACGTCTGAGCTAAACTTGGATATG 58.648 41.667 0.00 0.00 0.00 1.78
288 289 5.599999 ACGTCTGAGCTAAACTTGGATAT 57.400 39.130 0.00 0.00 0.00 1.63
289 290 5.450137 GCTACGTCTGAGCTAAACTTGGATA 60.450 44.000 0.00 0.00 36.96 2.59
290 291 3.963428 ACGTCTGAGCTAAACTTGGAT 57.037 42.857 0.00 0.00 0.00 3.41
291 292 3.367087 GCTACGTCTGAGCTAAACTTGGA 60.367 47.826 0.00 0.00 36.96 3.53
292 293 2.924290 GCTACGTCTGAGCTAAACTTGG 59.076 50.000 0.00 0.00 36.96 3.61
301 302 0.804156 GAAGGCAGCTACGTCTGAGC 60.804 60.000 8.35 4.57 40.42 4.26
302 303 0.814457 AGAAGGCAGCTACGTCTGAG 59.186 55.000 8.35 0.00 36.19 3.35
303 304 1.257743 AAGAAGGCAGCTACGTCTGA 58.742 50.000 8.35 0.00 36.19 3.27
304 305 2.086054 AAAGAAGGCAGCTACGTCTG 57.914 50.000 0.00 0.00 37.15 3.51
305 306 2.808543 CAAAAAGAAGGCAGCTACGTCT 59.191 45.455 0.00 0.00 0.00 4.18
306 307 2.095718 CCAAAAAGAAGGCAGCTACGTC 60.096 50.000 0.00 0.00 0.00 4.34
307 308 1.880027 CCAAAAAGAAGGCAGCTACGT 59.120 47.619 0.00 0.00 0.00 3.57
308 309 1.200020 CCCAAAAAGAAGGCAGCTACG 59.800 52.381 0.00 0.00 0.00 3.51
309 310 1.067565 GCCCAAAAAGAAGGCAGCTAC 60.068 52.381 0.00 0.00 46.34 3.58
310 311 1.256812 GCCCAAAAAGAAGGCAGCTA 58.743 50.000 0.00 0.00 46.34 3.32
311 312 2.052779 GCCCAAAAAGAAGGCAGCT 58.947 52.632 0.00 0.00 46.34 4.24
312 313 4.681421 GCCCAAAAAGAAGGCAGC 57.319 55.556 0.00 0.00 46.34 5.25
315 316 0.387565 TTCACGCCCAAAAAGAAGGC 59.612 50.000 0.00 0.00 43.53 4.35
316 317 1.953686 TCTTCACGCCCAAAAAGAAGG 59.046 47.619 0.00 0.00 37.04 3.46
317 318 3.632189 CTTCTTCACGCCCAAAAAGAAG 58.368 45.455 8.74 8.74 44.67 2.85
318 319 3.020984 ACTTCTTCACGCCCAAAAAGAA 58.979 40.909 0.00 0.00 36.57 2.52
319 320 2.357637 CACTTCTTCACGCCCAAAAAGA 59.642 45.455 0.00 0.00 0.00 2.52
320 321 2.099098 ACACTTCTTCACGCCCAAAAAG 59.901 45.455 0.00 0.00 0.00 2.27
321 322 2.096248 ACACTTCTTCACGCCCAAAAA 58.904 42.857 0.00 0.00 0.00 1.94
322 323 1.673920 GACACTTCTTCACGCCCAAAA 59.326 47.619 0.00 0.00 0.00 2.44
323 324 1.305201 GACACTTCTTCACGCCCAAA 58.695 50.000 0.00 0.00 0.00 3.28
324 325 0.179234 TGACACTTCTTCACGCCCAA 59.821 50.000 0.00 0.00 0.00 4.12
325 326 0.179234 TTGACACTTCTTCACGCCCA 59.821 50.000 0.00 0.00 0.00 5.36
326 327 1.002792 GTTTGACACTTCTTCACGCCC 60.003 52.381 0.00 0.00 0.00 6.13
327 328 1.002792 GGTTTGACACTTCTTCACGCC 60.003 52.381 0.00 0.00 0.00 5.68
328 329 1.668751 TGGTTTGACACTTCTTCACGC 59.331 47.619 0.00 0.00 0.00 5.34
329 330 4.349663 TTTGGTTTGACACTTCTTCACG 57.650 40.909 0.00 0.00 0.00 4.35
330 331 6.695713 GGTATTTTGGTTTGACACTTCTTCAC 59.304 38.462 0.00 0.00 0.00 3.18
331 332 6.183360 GGGTATTTTGGTTTGACACTTCTTCA 60.183 38.462 0.00 0.00 0.00 3.02
332 333 6.183360 TGGGTATTTTGGTTTGACACTTCTTC 60.183 38.462 0.00 0.00 0.00 2.87
333 334 5.659079 TGGGTATTTTGGTTTGACACTTCTT 59.341 36.000 0.00 0.00 0.00 2.52
334 335 5.205056 TGGGTATTTTGGTTTGACACTTCT 58.795 37.500 0.00 0.00 0.00 2.85
335 336 5.523438 TGGGTATTTTGGTTTGACACTTC 57.477 39.130 0.00 0.00 0.00 3.01
336 337 5.941555 TTGGGTATTTTGGTTTGACACTT 57.058 34.783 0.00 0.00 0.00 3.16
337 338 7.604657 TTATTGGGTATTTTGGTTTGACACT 57.395 32.000 0.00 0.00 0.00 3.55
338 339 6.367695 GCTTATTGGGTATTTTGGTTTGACAC 59.632 38.462 0.00 0.00 0.00 3.67
339 340 6.042093 TGCTTATTGGGTATTTTGGTTTGACA 59.958 34.615 0.00 0.00 0.00 3.58
340 341 6.459923 TGCTTATTGGGTATTTTGGTTTGAC 58.540 36.000 0.00 0.00 0.00 3.18
341 342 6.672266 TGCTTATTGGGTATTTTGGTTTGA 57.328 33.333 0.00 0.00 0.00 2.69
342 343 9.097257 CTTATGCTTATTGGGTATTTTGGTTTG 57.903 33.333 0.00 0.00 0.00 2.93
343 344 7.768582 GCTTATGCTTATTGGGTATTTTGGTTT 59.231 33.333 0.00 0.00 36.03 3.27
344 345 7.093112 TGCTTATGCTTATTGGGTATTTTGGTT 60.093 33.333 1.96 0.00 40.48 3.67
345 346 6.382570 TGCTTATGCTTATTGGGTATTTTGGT 59.617 34.615 1.96 0.00 40.48 3.67
346 347 6.815089 TGCTTATGCTTATTGGGTATTTTGG 58.185 36.000 1.96 0.00 40.48 3.28
347 348 8.891671 AATGCTTATGCTTATTGGGTATTTTG 57.108 30.769 1.96 0.00 40.48 2.44
349 350 8.306761 GCTAATGCTTATGCTTATTGGGTATTT 58.693 33.333 1.96 0.00 40.48 1.40
350 351 7.830739 GCTAATGCTTATGCTTATTGGGTATT 58.169 34.615 1.96 0.00 40.48 1.89
351 352 7.396540 GCTAATGCTTATGCTTATTGGGTAT 57.603 36.000 1.96 0.00 40.48 2.73
352 353 6.817765 GCTAATGCTTATGCTTATTGGGTA 57.182 37.500 1.96 0.00 40.48 3.69
353 354 5.712152 GCTAATGCTTATGCTTATTGGGT 57.288 39.130 1.96 0.00 40.48 4.51
363 364 8.861275 CCTTTTCAGGGAGAGCTAATGCTTATG 61.861 44.444 0.00 0.00 42.59 1.90
364 365 6.914848 CCTTTTCAGGGAGAGCTAATGCTTAT 60.915 42.308 0.00 0.00 42.59 1.73
365 366 5.630069 CCTTTTCAGGGAGAGCTAATGCTTA 60.630 44.000 0.00 0.00 42.59 3.09
366 367 4.869796 CCTTTTCAGGGAGAGCTAATGCTT 60.870 45.833 0.00 0.00 42.59 3.91
367 368 3.371380 CCTTTTCAGGGAGAGCTAATGCT 60.371 47.826 0.00 0.00 44.14 3.79
368 369 2.948315 CCTTTTCAGGGAGAGCTAATGC 59.052 50.000 0.00 0.00 36.36 3.56
369 370 4.494091 TCCTTTTCAGGGAGAGCTAATG 57.506 45.455 0.00 0.00 41.25 1.90
378 379 1.916181 GGATCACCTCCTTTTCAGGGA 59.084 52.381 0.00 0.00 41.25 4.20
379 380 1.635487 TGGATCACCTCCTTTTCAGGG 59.365 52.381 0.00 0.00 45.21 4.45
380 381 2.943199 GCTGGATCACCTCCTTTTCAGG 60.943 54.545 0.00 0.00 45.21 3.86
381 382 2.363683 GCTGGATCACCTCCTTTTCAG 58.636 52.381 0.00 0.00 45.21 3.02
382 383 1.004745 GGCTGGATCACCTCCTTTTCA 59.995 52.381 0.00 0.00 45.21 2.69
383 384 1.756430 GGCTGGATCACCTCCTTTTC 58.244 55.000 0.00 0.00 45.21 2.29
384 385 0.035056 CGGCTGGATCACCTCCTTTT 60.035 55.000 0.00 0.00 45.21 2.27
385 386 1.604378 CGGCTGGATCACCTCCTTT 59.396 57.895 0.00 0.00 45.21 3.11
386 387 3.036429 GCGGCTGGATCACCTCCTT 62.036 63.158 0.00 0.00 45.21 3.36
387 388 3.474570 GCGGCTGGATCACCTCCT 61.475 66.667 0.00 0.00 45.21 3.69
388 389 3.785859 TGCGGCTGGATCACCTCC 61.786 66.667 0.00 0.00 45.19 4.30
389 390 2.512515 GTGCGGCTGGATCACCTC 60.513 66.667 0.00 0.00 37.04 3.85
390 391 4.101448 GGTGCGGCTGGATCACCT 62.101 66.667 12.21 0.00 45.04 4.00
392 393 2.045926 AAGGTGCGGCTGGATCAC 60.046 61.111 0.00 0.00 0.00 3.06
393 394 2.268920 GAAGGTGCGGCTGGATCA 59.731 61.111 0.00 0.00 0.00 2.92
394 395 2.514824 GGAAGGTGCGGCTGGATC 60.515 66.667 0.00 0.00 0.00 3.36
395 396 3.329889 TGGAAGGTGCGGCTGGAT 61.330 61.111 0.00 0.00 0.00 3.41
396 397 4.020617 CTGGAAGGTGCGGCTGGA 62.021 66.667 0.00 0.00 0.00 3.86
397 398 2.954684 TACTGGAAGGTGCGGCTGG 61.955 63.158 0.00 0.00 39.30 4.85
398 399 1.741770 GTACTGGAAGGTGCGGCTG 60.742 63.158 0.00 0.00 39.30 4.85
399 400 2.663196 GTACTGGAAGGTGCGGCT 59.337 61.111 0.00 0.00 39.30 5.52
400 401 2.813908 CGTACTGGAAGGTGCGGC 60.814 66.667 0.00 0.00 40.54 6.53
402 403 1.940883 TAGCCGTACTGGAAGGTGCG 61.941 60.000 7.77 0.00 43.01 5.34
403 404 0.459759 GTAGCCGTACTGGAAGGTGC 60.460 60.000 7.77 0.00 42.00 5.01
404 405 0.175073 GGTAGCCGTACTGGAAGGTG 59.825 60.000 7.77 0.00 42.00 4.00
405 406 0.040794 AGGTAGCCGTACTGGAAGGT 59.959 55.000 7.77 0.00 42.00 3.50
406 407 1.134788 CAAGGTAGCCGTACTGGAAGG 60.135 57.143 7.77 0.00 42.00 3.46
407 408 1.549170 ACAAGGTAGCCGTACTGGAAG 59.451 52.381 7.77 0.00 42.00 3.46
408 409 1.636148 ACAAGGTAGCCGTACTGGAA 58.364 50.000 7.77 0.00 42.00 3.53
409 410 1.636148 AACAAGGTAGCCGTACTGGA 58.364 50.000 7.77 0.00 42.00 3.86
410 411 2.733227 CGTAACAAGGTAGCCGTACTGG 60.733 54.545 0.00 0.00 42.50 4.00
411 412 2.162208 TCGTAACAAGGTAGCCGTACTG 59.838 50.000 0.00 0.00 0.00 2.74
412 413 2.162408 GTCGTAACAAGGTAGCCGTACT 59.838 50.000 0.00 0.00 0.00 2.73
413 414 2.162408 AGTCGTAACAAGGTAGCCGTAC 59.838 50.000 0.00 0.00 0.00 3.67
414 415 2.436417 AGTCGTAACAAGGTAGCCGTA 58.564 47.619 0.00 0.00 0.00 4.02
415 416 1.251251 AGTCGTAACAAGGTAGCCGT 58.749 50.000 0.00 0.00 0.00 5.68
416 417 2.257034 GAAGTCGTAACAAGGTAGCCG 58.743 52.381 0.00 0.00 0.00 5.52
417 418 2.991866 GTGAAGTCGTAACAAGGTAGCC 59.008 50.000 0.00 0.00 0.00 3.93
418 419 3.910648 AGTGAAGTCGTAACAAGGTAGC 58.089 45.455 0.00 0.00 0.00 3.58
419 420 4.022589 TGGAGTGAAGTCGTAACAAGGTAG 60.023 45.833 0.00 0.00 0.00 3.18
420 421 3.890756 TGGAGTGAAGTCGTAACAAGGTA 59.109 43.478 0.00 0.00 0.00 3.08
421 422 2.696707 TGGAGTGAAGTCGTAACAAGGT 59.303 45.455 0.00 0.00 0.00 3.50
422 423 3.243771 ACTGGAGTGAAGTCGTAACAAGG 60.244 47.826 0.00 0.00 0.00 3.61
423 424 3.978687 ACTGGAGTGAAGTCGTAACAAG 58.021 45.455 0.00 0.00 0.00 3.16
424 425 3.973657 GACTGGAGTGAAGTCGTAACAA 58.026 45.455 0.00 0.00 35.12 2.83
425 426 3.637998 GACTGGAGTGAAGTCGTAACA 57.362 47.619 0.00 0.00 35.12 2.41
1337 1348 9.587772 TTTGTAGATCTTTCTCTAATTCTTCGG 57.412 33.333 0.00 0.00 33.17 4.30
1535 3911 9.908152 CACAATTTTTACTTTTACTCCCCTTAG 57.092 33.333 0.00 0.00 0.00 2.18
2338 6269 1.207593 CGCAACGGAGCTTCCAAAG 59.792 57.895 0.00 0.00 35.91 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.