Multiple sequence alignment - TraesCS1D01G179200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G179200 chr1D 100.000 7272 0 0 1 7272 254387633 254394904 0.000000e+00 13393
1 TraesCS1D01G179200 chr1D 99.801 503 1 0 3305 3807 254391455 254391957 0.000000e+00 924
2 TraesCS1D01G179200 chr1A 98.610 2661 34 1 1 2661 278526787 278529444 0.000000e+00 4706
3 TraesCS1D01G179200 chr1A 97.700 1174 15 6 2646 3807 278529953 278531126 0.000000e+00 2008
4 TraesCS1D01G179200 chr1A 99.762 839 2 0 3801 4639 278530602 278531440 0.000000e+00 1539
5 TraesCS1D01G179200 chr1A 99.254 670 3 2 2646 3314 278531457 278530789 0.000000e+00 1208
6 TraesCS1D01G179200 chr3B 98.819 2625 22 4 4650 7272 101917005 101914388 0.000000e+00 4667
7 TraesCS1D01G179200 chr3B 98.095 2624 42 6 4650 7272 201532853 201530237 0.000000e+00 4562
8 TraesCS1D01G179200 chr3B 98.321 2383 39 1 1 2383 201534482 201532101 0.000000e+00 4178
9 TraesCS1D01G179200 chr3B 99.881 839 1 0 3801 4639 101917559 101916721 0.000000e+00 1544
10 TraesCS1D01G179200 chr3B 99.403 670 2 2 2646 3314 101916704 101917372 0.000000e+00 1214
11 TraesCS1D01G179200 chr3B 100.000 503 0 0 3305 3807 101917537 101917035 0.000000e+00 929
12 TraesCS1D01G179200 chr3B 100.000 285 0 0 2378 2662 6003316 6003032 1.800000e-145 527
13 TraesCS1D01G179200 chr3B 100.000 284 0 0 2378 2661 101916775 101916492 6.460000e-145 525
14 TraesCS1D01G179200 chr5D 98.552 2624 30 3 4650 7272 503224044 503221428 0.000000e+00 4628
15 TraesCS1D01G179200 chr5D 98.783 2383 25 2 1 2383 503225671 503223293 0.000000e+00 4237
16 TraesCS1D01G179200 chr5D 98.404 2381 36 2 1 2381 503235987 503233609 0.000000e+00 4185
17 TraesCS1D01G179200 chr5D 99.762 839 2 0 3801 4639 503224598 503223760 0.000000e+00 1539
18 TraesCS1D01G179200 chr5D 99.642 839 3 0 3801 4639 503271947 503272785 0.000000e+00 1533
19 TraesCS1D01G179200 chr5D 99.254 670 3 2 2646 3314 503223743 503224411 0.000000e+00 1208
20 TraesCS1D01G179200 chr5D 99.254 670 3 2 2646 3314 503272802 503272134 0.000000e+00 1208
21 TraesCS1D01G179200 chr5D 100.000 503 0 0 3305 3807 503224576 503224074 0.000000e+00 929
22 TraesCS1D01G179200 chr5D 100.000 284 0 0 2378 2661 503223814 503223531 6.460000e-145 525
23 TraesCS1D01G179200 chrUn 98.514 2624 30 3 4650 7272 216512780 216515395 0.000000e+00 4621
24 TraesCS1D01G179200 chrUn 98.514 2624 30 3 4650 7272 286270603 286267988 0.000000e+00 4621
25 TraesCS1D01G179200 chrUn 98.154 2383 39 2 1 2383 216511155 216513532 0.000000e+00 4152
26 TraesCS1D01G179200 chrUn 98.154 2383 39 2 1 2383 286272228 286269851 0.000000e+00 4152
27 TraesCS1D01G179200 chrUn 100.000 285 0 0 2378 2662 379970787 379971071 1.800000e-145 527
28 TraesCS1D01G179200 chr3D 98.438 2624 33 3 4650 7272 589271131 589273747 0.000000e+00 4612
29 TraesCS1D01G179200 chr3D 99.860 1430 2 0 2378 3807 24165519 24166948 0.000000e+00 2630
30 TraesCS1D01G179200 chr3D 99.642 839 3 0 3801 4639 589270577 589271415 0.000000e+00 1533
31 TraesCS1D01G179200 chr3D 99.523 839 4 0 3801 4639 24164735 24165573 0.000000e+00 1528
32 TraesCS1D01G179200 chr3D 99.254 670 3 2 2646 3314 589271432 589270764 0.000000e+00 1208
33 TraesCS1D01G179200 chr3D 99.801 503 1 0 3305 3807 589270599 589271101 0.000000e+00 924
34 TraesCS1D01G179200 chr3A 98.399 2624 34 3 4650 7272 66011796 66014412 0.000000e+00 4606
35 TraesCS1D01G179200 chr3A 98.362 2625 33 5 4650 7272 164858237 164860853 0.000000e+00 4601
36 TraesCS1D01G179200 chr3A 97.904 2624 47 3 4650 7272 672904187 672906803 0.000000e+00 4534
37 TraesCS1D01G179200 chr3A 98.489 2383 32 2 1 2383 66010170 66012548 0.000000e+00 4198
38 TraesCS1D01G179200 chr3A 99.499 1995 9 1 2646 4639 164858538 164856544 0.000000e+00 3627
39 TraesCS1D01G179200 chr3A 99.656 1163 3 1 2646 3807 495095023 495096185 0.000000e+00 2124
40 TraesCS1D01G179200 chr3A 99.762 839 2 0 3801 4639 164854439 164855277 0.000000e+00 1539
41 TraesCS1D01G179200 chr3A 99.860 712 1 0 2378 3089 164856598 164855887 0.000000e+00 1310
42 TraesCS1D01G179200 chr3A 99.801 503 1 0 3305 3807 66011264 66011766 0.000000e+00 924
43 TraesCS1D01G179200 chr3A 100.000 284 0 0 2378 2661 495095094 495094811 6.460000e-145 525
44 TraesCS1D01G179200 chr2B 98.171 2624 39 5 4650 7272 474914269 474911654 0.000000e+00 4571
45 TraesCS1D01G179200 chr2B 98.405 2383 35 1 1 2383 449213739 449211360 0.000000e+00 4187
46 TraesCS1D01G179200 chr2B 99.642 839 3 0 3801 4639 449212666 449211828 0.000000e+00 1533
47 TraesCS1D01G179200 chr2B 100.000 284 0 0 2378 2661 234533710 234533427 6.460000e-145 525
48 TraesCS1D01G179200 chr6D 98.279 2383 37 1 1 2383 458922767 458920389 0.000000e+00 4170


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G179200 chr1D 254387633 254394904 7271 False 7158.500000 13393 99.900500 1 7272 2 chr1D.!!$F1 7271
1 TraesCS1D01G179200 chr1A 278526787 278531440 4653 False 2751.000000 4706 98.690667 1 4639 3 chr1A.!!$F1 4638
2 TraesCS1D01G179200 chr1A 278530789 278531457 668 True 1208.000000 1208 99.254000 2646 3314 1 chr1A.!!$R1 668
3 TraesCS1D01G179200 chr3B 201530237 201534482 4245 True 4370.000000 4562 98.208000 1 7272 2 chr3B.!!$R3 7271
4 TraesCS1D01G179200 chr3B 101914388 101917559 3171 True 1916.250000 4667 99.675000 2378 7272 4 chr3B.!!$R2 4894
5 TraesCS1D01G179200 chr3B 101916704 101917372 668 False 1214.000000 1214 99.403000 2646 3314 1 chr3B.!!$F1 668
6 TraesCS1D01G179200 chr5D 503233609 503235987 2378 True 4185.000000 4185 98.404000 1 2381 1 chr5D.!!$R1 2380
7 TraesCS1D01G179200 chr5D 503221428 503225671 4243 True 2371.600000 4628 99.419400 1 7272 5 chr5D.!!$R3 7271
8 TraesCS1D01G179200 chr5D 503271947 503272785 838 False 1533.000000 1533 99.642000 3801 4639 1 chr5D.!!$F2 838
9 TraesCS1D01G179200 chr5D 503223743 503224411 668 False 1208.000000 1208 99.254000 2646 3314 1 chr5D.!!$F1 668
10 TraesCS1D01G179200 chr5D 503272134 503272802 668 True 1208.000000 1208 99.254000 2646 3314 1 chr5D.!!$R2 668
11 TraesCS1D01G179200 chrUn 216511155 216515395 4240 False 4386.500000 4621 98.334000 1 7272 2 chrUn.!!$F2 7271
12 TraesCS1D01G179200 chrUn 286267988 286272228 4240 True 4386.500000 4621 98.334000 1 7272 2 chrUn.!!$R1 7271
13 TraesCS1D01G179200 chr3D 589270577 589273747 3170 False 2356.333333 4612 99.293667 3305 7272 3 chr3D.!!$F2 3967
14 TraesCS1D01G179200 chr3D 24164735 24166948 2213 False 2079.000000 2630 99.691500 2378 4639 2 chr3D.!!$F1 2261
15 TraesCS1D01G179200 chr3D 589270764 589271432 668 True 1208.000000 1208 99.254000 2646 3314 1 chr3D.!!$R1 668
16 TraesCS1D01G179200 chr3A 672904187 672906803 2616 False 4534.000000 4534 97.904000 4650 7272 1 chr3A.!!$F2 2622
17 TraesCS1D01G179200 chr3A 66010170 66014412 4242 False 3242.666667 4606 98.896333 1 7272 3 chr3A.!!$F3 7271
18 TraesCS1D01G179200 chr3A 164854439 164860853 6414 False 3070.000000 4601 99.062000 3801 7272 2 chr3A.!!$F4 3471
19 TraesCS1D01G179200 chr3A 164855887 164858538 2651 True 2468.500000 3627 99.679500 2378 4639 2 chr3A.!!$R2 2261
20 TraesCS1D01G179200 chr3A 495095023 495096185 1162 False 2124.000000 2124 99.656000 2646 3807 1 chr3A.!!$F1 1161
21 TraesCS1D01G179200 chr2B 474911654 474914269 2615 True 4571.000000 4571 98.171000 4650 7272 1 chr2B.!!$R2 2622
22 TraesCS1D01G179200 chr2B 449211360 449213739 2379 True 2860.000000 4187 99.023500 1 4639 2 chr2B.!!$R3 4638
23 TraesCS1D01G179200 chr6D 458920389 458922767 2378 True 4170.000000 4170 98.279000 1 2383 1 chr6D.!!$R1 2382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 498 0.458025 GGATCGACGCGGAAAGTTCT 60.458 55.000 12.47 0.0 0.00 3.01 F
638 641 2.084930 GGGAGTGGGGGTGCCATAT 61.085 63.158 0.00 0.0 0.00 1.78 F
1151 1154 5.982356 TCTTCTTCTGGTGATCGATTCAAT 58.018 37.500 0.00 0.0 35.70 2.57 F
2033 2037 4.529377 ACGGGTAGTTCCTACAAAGAATCA 59.471 41.667 4.01 0.0 38.58 2.57 F
4221 4751 7.923414 ATGTTTCAGTTTATGTTCCTACCTC 57.077 36.000 0.00 0.0 0.00 3.85 F
4519 6086 0.031721 AGGAGTGTGGTTCGTTCGAC 59.968 55.000 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1633 4.261155 CCGTTCACAATTTCTTGAAGCTCA 60.261 41.667 0.00 0.0 36.20 4.26 R
2033 2037 7.700322 CAAGCATTGTATACGTCATTAGTCT 57.300 36.000 0.00 0.0 42.34 3.24 R
2959 3489 6.547510 GGTTTCTCTTGGCTATATGGTTCATT 59.452 38.462 0.00 0.0 0.00 2.57 R
4355 5922 3.632145 ACCGTTCACAATTTCTTGAAGCT 59.368 39.130 0.00 0.0 36.20 3.74 R
5570 9640 1.226128 GAATTCGCGTGGCTGAAGC 60.226 57.895 5.77 0.0 41.14 3.86 R
6426 10787 2.040813 AGAATGTGCATGGTCTGGTTCT 59.959 45.455 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.928618 TCGATCTCATAGATCCCTATAGAATTT 57.071 33.333 10.52 0.00 46.42 1.82
86 87 6.096673 AGAATTTTGTGGAAAGCCGTATTT 57.903 33.333 0.00 0.00 36.79 1.40
89 90 4.920640 TTTGTGGAAAGCCGTATTTGAA 57.079 36.364 0.00 0.00 36.79 2.69
297 300 7.266335 CGATCCAATTTTTCGTAATCGATTAGC 59.734 37.037 18.03 11.72 45.65 3.09
307 310 7.205737 TCGTAATCGATTAGCTAACATGGTA 57.794 36.000 18.03 0.00 41.35 3.25
495 498 0.458025 GGATCGACGCGGAAAGTTCT 60.458 55.000 12.47 0.00 0.00 3.01
638 641 2.084930 GGGAGTGGGGGTGCCATAT 61.085 63.158 0.00 0.00 0.00 1.78
696 699 6.384224 CAAATAGAGCTCTTGCACATTTTCA 58.616 36.000 23.84 0.00 42.74 2.69
775 778 7.796054 TCGGAAAAGAATCAATAGAAGGAGAT 58.204 34.615 0.00 0.00 0.00 2.75
1138 1141 5.982890 TTTTGGCCTAATTCTTCTTCTGG 57.017 39.130 3.32 0.00 0.00 3.86
1151 1154 5.982356 TCTTCTTCTGGTGATCGATTCAAT 58.018 37.500 0.00 0.00 35.70 2.57
1165 1168 8.393366 TGATCGATTCAATCTCTGATCAAAAAC 58.607 33.333 11.83 0.00 39.23 2.43
2033 2037 4.529377 ACGGGTAGTTCCTACAAAGAATCA 59.471 41.667 4.01 0.00 38.58 2.57
4221 4751 7.923414 ATGTTTCAGTTTATGTTCCTACCTC 57.077 36.000 0.00 0.00 0.00 3.85
4361 5928 3.956377 GGGGGAGATCGAGCTTCA 58.044 61.111 11.82 0.00 0.00 3.02
4362 5929 2.212327 GGGGGAGATCGAGCTTCAA 58.788 57.895 11.82 0.00 0.00 2.69
4363 5930 0.105778 GGGGGAGATCGAGCTTCAAG 59.894 60.000 11.82 0.00 0.00 3.02
4364 5931 1.115467 GGGGAGATCGAGCTTCAAGA 58.885 55.000 11.82 0.00 0.00 3.02
4365 5932 1.482593 GGGGAGATCGAGCTTCAAGAA 59.517 52.381 11.82 0.00 0.00 2.52
4366 5933 2.093447 GGGGAGATCGAGCTTCAAGAAA 60.093 50.000 11.82 0.00 0.00 2.52
4367 5934 3.432890 GGGGAGATCGAGCTTCAAGAAAT 60.433 47.826 11.82 0.00 0.00 2.17
4368 5935 4.195416 GGGAGATCGAGCTTCAAGAAATT 58.805 43.478 11.82 0.00 0.00 1.82
4369 5936 4.034975 GGGAGATCGAGCTTCAAGAAATTG 59.965 45.833 11.82 0.00 0.00 2.32
4370 5937 4.633565 GGAGATCGAGCTTCAAGAAATTGT 59.366 41.667 3.92 0.00 0.00 2.71
4371 5938 5.447010 GGAGATCGAGCTTCAAGAAATTGTG 60.447 44.000 3.92 0.00 0.00 3.33
4372 5939 5.240891 AGATCGAGCTTCAAGAAATTGTGA 58.759 37.500 0.00 0.00 0.00 3.58
4373 5940 5.702670 AGATCGAGCTTCAAGAAATTGTGAA 59.297 36.000 0.00 1.01 32.91 3.18
4374 5941 5.095691 TCGAGCTTCAAGAAATTGTGAAC 57.904 39.130 0.00 0.00 30.73 3.18
4375 5942 3.902465 CGAGCTTCAAGAAATTGTGAACG 59.098 43.478 0.00 0.00 30.73 3.95
4376 5943 4.222114 GAGCTTCAAGAAATTGTGAACGG 58.778 43.478 0.00 0.00 30.73 4.44
4377 5944 3.632145 AGCTTCAAGAAATTGTGAACGGT 59.368 39.130 0.00 0.00 30.73 4.83
4378 5945 3.975035 GCTTCAAGAAATTGTGAACGGTC 59.025 43.478 0.00 0.00 30.73 4.79
4379 5946 4.261197 GCTTCAAGAAATTGTGAACGGTCT 60.261 41.667 0.33 0.00 30.73 3.85
4380 5947 5.733373 GCTTCAAGAAATTGTGAACGGTCTT 60.733 40.000 0.33 0.00 30.73 3.01
4381 5948 6.512741 GCTTCAAGAAATTGTGAACGGTCTTA 60.513 38.462 0.33 0.00 30.73 2.10
4382 5949 7.504924 TTCAAGAAATTGTGAACGGTCTTAT 57.495 32.000 0.33 0.00 0.00 1.73
4383 5950 7.129109 TCAAGAAATTGTGAACGGTCTTATC 57.871 36.000 0.33 0.00 0.00 1.75
4384 5951 6.708502 TCAAGAAATTGTGAACGGTCTTATCA 59.291 34.615 0.33 0.00 0.00 2.15
4385 5952 7.227711 TCAAGAAATTGTGAACGGTCTTATCAA 59.772 33.333 0.33 2.86 0.00 2.57
4386 5953 7.687941 AGAAATTGTGAACGGTCTTATCAAT 57.312 32.000 0.33 5.12 0.00 2.57
4387 5954 8.786826 AGAAATTGTGAACGGTCTTATCAATA 57.213 30.769 0.33 0.00 0.00 1.90
4388 5955 8.665685 AGAAATTGTGAACGGTCTTATCAATAC 58.334 33.333 0.33 6.25 0.00 1.89
4389 5956 7.915293 AATTGTGAACGGTCTTATCAATACA 57.085 32.000 0.33 0.00 0.00 2.29
4390 5957 6.715344 TTGTGAACGGTCTTATCAATACAC 57.285 37.500 0.33 0.00 0.00 2.90
4391 5958 5.785243 TGTGAACGGTCTTATCAATACACA 58.215 37.500 0.33 0.00 33.30 3.72
4392 5959 6.224584 TGTGAACGGTCTTATCAATACACAA 58.775 36.000 0.33 0.00 32.90 3.33
4393 5960 6.706716 TGTGAACGGTCTTATCAATACACAAA 59.293 34.615 0.33 0.00 32.90 2.83
4394 5961 7.389330 TGTGAACGGTCTTATCAATACACAAAT 59.611 33.333 0.33 0.00 32.90 2.32
4395 5962 7.692291 GTGAACGGTCTTATCAATACACAAATG 59.308 37.037 0.33 0.00 0.00 2.32
4396 5963 7.389330 TGAACGGTCTTATCAATACACAAATGT 59.611 33.333 0.33 0.00 43.30 2.71
4397 5964 8.780846 AACGGTCTTATCAATACACAAATGTA 57.219 30.769 0.00 0.00 45.37 2.29
4409 5976 4.855340 ACACAAATGTATAACTCCCCAGG 58.145 43.478 0.00 0.00 37.26 4.45
4410 5977 4.538490 ACACAAATGTATAACTCCCCAGGA 59.462 41.667 0.00 0.00 37.26 3.86
4411 5978 5.014755 ACACAAATGTATAACTCCCCAGGAA 59.985 40.000 0.00 0.00 37.26 3.36
4412 5979 6.129179 CACAAATGTATAACTCCCCAGGAAT 58.871 40.000 0.00 0.00 0.00 3.01
4413 5980 6.607198 CACAAATGTATAACTCCCCAGGAATT 59.393 38.462 0.00 0.00 0.00 2.17
4414 5981 7.124147 CACAAATGTATAACTCCCCAGGAATTT 59.876 37.037 0.00 0.00 0.00 1.82
4415 5982 7.342026 ACAAATGTATAACTCCCCAGGAATTTC 59.658 37.037 0.00 0.00 0.00 2.17
4416 5983 6.590656 ATGTATAACTCCCCAGGAATTTCA 57.409 37.500 0.00 0.00 0.00 2.69
4417 5984 6.395780 TGTATAACTCCCCAGGAATTTCAA 57.604 37.500 0.00 0.00 0.00 2.69
4418 5985 6.980577 TGTATAACTCCCCAGGAATTTCAAT 58.019 36.000 0.00 0.00 0.00 2.57
4419 5986 7.418378 TGTATAACTCCCCAGGAATTTCAATT 58.582 34.615 0.00 0.00 0.00 2.32
4420 5987 6.796785 ATAACTCCCCAGGAATTTCAATTG 57.203 37.500 0.00 0.00 0.00 2.32
4421 5988 2.833943 ACTCCCCAGGAATTTCAATTGC 59.166 45.455 0.00 0.00 37.04 3.56
4422 5989 1.824230 TCCCCAGGAATTTCAATTGCG 59.176 47.619 0.00 0.00 41.03 4.85
4423 5990 1.643880 CCCAGGAATTTCAATTGCGC 58.356 50.000 0.00 0.00 41.03 6.09
4424 5991 1.205417 CCCAGGAATTTCAATTGCGCT 59.795 47.619 9.73 0.00 41.03 5.92
4425 5992 2.354003 CCCAGGAATTTCAATTGCGCTT 60.354 45.455 9.73 0.00 41.03 4.68
4426 5993 3.119173 CCCAGGAATTTCAATTGCGCTTA 60.119 43.478 9.73 0.00 41.03 3.09
4427 5994 4.441913 CCCAGGAATTTCAATTGCGCTTAT 60.442 41.667 9.73 0.00 41.03 1.73
4428 5995 5.221224 CCCAGGAATTTCAATTGCGCTTATA 60.221 40.000 9.73 0.00 41.03 0.98
4429 5996 6.449698 CCAGGAATTTCAATTGCGCTTATAT 58.550 36.000 9.73 0.00 41.03 0.86
4430 5997 6.583806 CCAGGAATTTCAATTGCGCTTATATC 59.416 38.462 9.73 0.00 41.03 1.63
4431 5998 6.583806 CAGGAATTTCAATTGCGCTTATATCC 59.416 38.462 9.73 5.06 41.03 2.59
4432 5999 6.265196 AGGAATTTCAATTGCGCTTATATCCA 59.735 34.615 9.73 0.00 41.03 3.41
4433 6000 7.039504 AGGAATTTCAATTGCGCTTATATCCAT 60.040 33.333 9.73 0.00 41.03 3.41
4434 6001 7.274250 GGAATTTCAATTGCGCTTATATCCATC 59.726 37.037 9.73 0.00 0.00 3.51
4435 6002 6.631971 TTTCAATTGCGCTTATATCCATCA 57.368 33.333 9.73 0.00 0.00 3.07
4436 6003 5.611796 TCAATTGCGCTTATATCCATCAC 57.388 39.130 9.73 0.00 0.00 3.06
4437 6004 5.308014 TCAATTGCGCTTATATCCATCACT 58.692 37.500 9.73 0.00 0.00 3.41
4438 6005 5.179929 TCAATTGCGCTTATATCCATCACTG 59.820 40.000 9.73 0.00 0.00 3.66
4439 6006 3.751479 TGCGCTTATATCCATCACTGT 57.249 42.857 9.73 0.00 0.00 3.55
4440 6007 4.864704 TGCGCTTATATCCATCACTGTA 57.135 40.909 9.73 0.00 0.00 2.74
4441 6008 4.809673 TGCGCTTATATCCATCACTGTAG 58.190 43.478 9.73 0.00 0.00 2.74
4442 6009 4.177026 GCGCTTATATCCATCACTGTAGG 58.823 47.826 0.00 0.00 0.00 3.18
4443 6010 4.082190 GCGCTTATATCCATCACTGTAGGA 60.082 45.833 0.00 0.00 35.59 2.94
4444 6011 5.403246 CGCTTATATCCATCACTGTAGGAC 58.597 45.833 0.00 0.00 33.57 3.85
4445 6012 5.184096 CGCTTATATCCATCACTGTAGGACT 59.816 44.000 0.00 0.00 33.57 3.85
4446 6013 6.294787 CGCTTATATCCATCACTGTAGGACTT 60.295 42.308 0.00 0.00 33.57 3.01
4447 6014 6.870965 GCTTATATCCATCACTGTAGGACTTG 59.129 42.308 0.00 0.00 33.57 3.16
4448 6015 5.815233 ATATCCATCACTGTAGGACTTGG 57.185 43.478 0.00 0.00 33.57 3.61
4449 6016 2.187958 TCCATCACTGTAGGACTTGGG 58.812 52.381 0.00 0.00 0.00 4.12
4450 6017 1.909302 CCATCACTGTAGGACTTGGGT 59.091 52.381 0.00 0.00 0.00 4.51
4451 6018 2.305927 CCATCACTGTAGGACTTGGGTT 59.694 50.000 0.00 0.00 0.00 4.11
4452 6019 3.244911 CCATCACTGTAGGACTTGGGTTT 60.245 47.826 0.00 0.00 0.00 3.27
4453 6020 4.019681 CCATCACTGTAGGACTTGGGTTTA 60.020 45.833 0.00 0.00 0.00 2.01
4454 6021 5.514136 CCATCACTGTAGGACTTGGGTTTAA 60.514 44.000 0.00 0.00 0.00 1.52
4455 6022 5.223449 TCACTGTAGGACTTGGGTTTAAG 57.777 43.478 0.00 0.00 0.00 1.85
4456 6023 3.751698 CACTGTAGGACTTGGGTTTAAGC 59.248 47.826 0.00 0.00 0.00 3.09
4457 6024 3.651423 ACTGTAGGACTTGGGTTTAAGCT 59.349 43.478 0.00 0.00 0.00 3.74
4458 6025 4.104261 ACTGTAGGACTTGGGTTTAAGCTT 59.896 41.667 3.48 3.48 0.00 3.74
4459 6026 5.056553 TGTAGGACTTGGGTTTAAGCTTT 57.943 39.130 3.20 0.00 0.00 3.51
4460 6027 5.067954 TGTAGGACTTGGGTTTAAGCTTTC 58.932 41.667 3.20 0.00 0.00 2.62
4461 6028 3.497332 AGGACTTGGGTTTAAGCTTTCC 58.503 45.455 3.20 1.59 0.00 3.13
4462 6029 2.561419 GGACTTGGGTTTAAGCTTTCCC 59.439 50.000 20.26 20.26 40.26 3.97
4463 6030 2.561419 GACTTGGGTTTAAGCTTTCCCC 59.439 50.000 22.58 19.87 39.20 4.81
4464 6031 2.090999 ACTTGGGTTTAAGCTTTCCCCA 60.091 45.455 20.59 20.59 43.54 4.96
4465 6032 2.302587 TGGGTTTAAGCTTTCCCCAG 57.697 50.000 20.59 0.00 40.41 4.45
4466 6033 0.895530 GGGTTTAAGCTTTCCCCAGC 59.104 55.000 18.13 4.08 40.44 4.85
4467 6034 0.895530 GGTTTAAGCTTTCCCCAGCC 59.104 55.000 3.20 0.00 41.12 4.85
4468 6035 0.895530 GTTTAAGCTTTCCCCAGCCC 59.104 55.000 3.20 0.00 41.12 5.19
4469 6036 0.252057 TTTAAGCTTTCCCCAGCCCC 60.252 55.000 3.20 0.00 41.12 5.80
4470 6037 1.146544 TTAAGCTTTCCCCAGCCCCT 61.147 55.000 3.20 0.00 41.12 4.79
4471 6038 1.146544 TAAGCTTTCCCCAGCCCCTT 61.147 55.000 3.20 0.00 41.12 3.95
4472 6039 2.036065 AAGCTTTCCCCAGCCCCTTT 62.036 55.000 0.00 0.00 41.12 3.11
4473 6040 1.536418 GCTTTCCCCAGCCCCTTTT 60.536 57.895 0.00 0.00 33.21 2.27
4474 6041 1.544825 GCTTTCCCCAGCCCCTTTTC 61.545 60.000 0.00 0.00 33.21 2.29
4475 6042 0.178935 CTTTCCCCAGCCCCTTTTCA 60.179 55.000 0.00 0.00 0.00 2.69
4476 6043 0.491371 TTTCCCCAGCCCCTTTTCAT 59.509 50.000 0.00 0.00 0.00 2.57
4477 6044 0.041090 TTCCCCAGCCCCTTTTCATC 59.959 55.000 0.00 0.00 0.00 2.92
4478 6045 1.145900 TCCCCAGCCCCTTTTCATCA 61.146 55.000 0.00 0.00 0.00 3.07
4479 6046 0.252193 CCCCAGCCCCTTTTCATCAA 60.252 55.000 0.00 0.00 0.00 2.57
4480 6047 1.623279 CCCCAGCCCCTTTTCATCAAT 60.623 52.381 0.00 0.00 0.00 2.57
4481 6048 1.483415 CCCAGCCCCTTTTCATCAATG 59.517 52.381 0.00 0.00 0.00 2.82
4482 6049 1.483415 CCAGCCCCTTTTCATCAATGG 59.517 52.381 0.00 0.00 0.00 3.16
4483 6050 2.459644 CAGCCCCTTTTCATCAATGGA 58.540 47.619 0.00 0.00 32.27 3.41
4484 6051 2.167075 CAGCCCCTTTTCATCAATGGAC 59.833 50.000 0.00 0.00 32.27 4.02
4485 6052 2.043526 AGCCCCTTTTCATCAATGGACT 59.956 45.455 0.00 0.00 32.27 3.85
4486 6053 2.428530 GCCCCTTTTCATCAATGGACTC 59.571 50.000 0.00 0.00 32.27 3.36
4487 6054 3.026694 CCCCTTTTCATCAATGGACTCC 58.973 50.000 0.00 0.00 32.27 3.85
4488 6055 3.309410 CCCCTTTTCATCAATGGACTCCT 60.309 47.826 0.00 0.00 32.27 3.69
4489 6056 3.698040 CCCTTTTCATCAATGGACTCCTG 59.302 47.826 0.00 0.00 32.27 3.86
4490 6057 4.568380 CCCTTTTCATCAATGGACTCCTGA 60.568 45.833 0.00 0.00 32.27 3.86
4491 6058 4.397417 CCTTTTCATCAATGGACTCCTGAC 59.603 45.833 0.00 0.00 32.27 3.51
4492 6059 2.967599 TCATCAATGGACTCCTGACG 57.032 50.000 0.00 0.00 0.00 4.35
4493 6060 2.179427 TCATCAATGGACTCCTGACGT 58.821 47.619 0.00 0.00 0.00 4.34
4494 6061 2.166459 TCATCAATGGACTCCTGACGTC 59.834 50.000 9.11 9.11 0.00 4.34
4495 6062 1.924731 TCAATGGACTCCTGACGTCT 58.075 50.000 17.92 0.00 0.00 4.18
4496 6063 3.081710 TCAATGGACTCCTGACGTCTA 57.918 47.619 17.92 2.26 0.00 2.59
4497 6064 2.753452 TCAATGGACTCCTGACGTCTAC 59.247 50.000 17.92 0.00 0.00 2.59
4498 6065 1.380524 ATGGACTCCTGACGTCTACG 58.619 55.000 17.92 0.04 46.33 3.51
4499 6066 0.322648 TGGACTCCTGACGTCTACGA 59.677 55.000 17.92 8.23 43.02 3.43
4500 6067 1.271001 TGGACTCCTGACGTCTACGAA 60.271 52.381 17.92 0.00 43.02 3.85
4501 6068 1.397692 GGACTCCTGACGTCTACGAAG 59.602 57.143 17.92 4.94 43.02 3.79
4502 6069 1.397692 GACTCCTGACGTCTACGAAGG 59.602 57.143 17.92 14.43 43.16 3.46
4503 6070 1.002888 ACTCCTGACGTCTACGAAGGA 59.997 52.381 17.92 17.84 45.76 3.36
4504 6071 1.735386 TCCTGACGTCTACGAAGGAG 58.265 55.000 17.92 2.62 44.38 3.69
4505 6072 1.002888 TCCTGACGTCTACGAAGGAGT 59.997 52.381 17.92 0.00 44.38 3.85
4506 6073 1.130749 CCTGACGTCTACGAAGGAGTG 59.869 57.143 17.92 0.00 43.90 3.51
4507 6074 1.805345 CTGACGTCTACGAAGGAGTGT 59.195 52.381 17.92 0.00 43.02 3.55
4508 6075 1.534163 TGACGTCTACGAAGGAGTGTG 59.466 52.381 17.92 0.00 43.02 3.82
4509 6076 0.879765 ACGTCTACGAAGGAGTGTGG 59.120 55.000 9.86 0.00 43.02 4.17
4510 6077 0.879765 CGTCTACGAAGGAGTGTGGT 59.120 55.000 0.00 0.00 43.02 4.16
4511 6078 1.268899 CGTCTACGAAGGAGTGTGGTT 59.731 52.381 0.00 0.00 43.02 3.67
4512 6079 2.667724 CGTCTACGAAGGAGTGTGGTTC 60.668 54.545 0.00 0.00 43.02 3.62
4513 6080 1.538512 TCTACGAAGGAGTGTGGTTCG 59.461 52.381 2.35 2.35 46.64 3.95
4515 6082 3.284197 CGAAGGAGTGTGGTTCGTT 57.716 52.632 0.00 0.00 38.57 3.85
4516 6083 1.137513 CGAAGGAGTGTGGTTCGTTC 58.862 55.000 0.00 0.00 38.57 3.95
4517 6084 1.137513 GAAGGAGTGTGGTTCGTTCG 58.862 55.000 0.00 0.00 32.09 3.95
4518 6085 0.748450 AAGGAGTGTGGTTCGTTCGA 59.252 50.000 0.00 0.00 0.00 3.71
4519 6086 0.031721 AGGAGTGTGGTTCGTTCGAC 59.968 55.000 0.00 0.00 0.00 4.20
4520 6087 0.249155 GGAGTGTGGTTCGTTCGACA 60.249 55.000 0.00 0.00 0.00 4.35
4521 6088 1.563111 GAGTGTGGTTCGTTCGACAA 58.437 50.000 0.00 0.00 0.00 3.18
4522 6089 1.928503 GAGTGTGGTTCGTTCGACAAA 59.071 47.619 0.00 0.00 0.00 2.83
4523 6090 2.542595 GAGTGTGGTTCGTTCGACAAAT 59.457 45.455 0.00 0.00 0.00 2.32
4524 6091 2.940410 AGTGTGGTTCGTTCGACAAATT 59.060 40.909 0.00 0.00 0.00 1.82
4525 6092 3.001939 AGTGTGGTTCGTTCGACAAATTC 59.998 43.478 0.00 0.00 0.00 2.17
4526 6093 2.288458 TGTGGTTCGTTCGACAAATTCC 59.712 45.455 0.00 0.00 0.00 3.01
4527 6094 2.546789 GTGGTTCGTTCGACAAATTCCT 59.453 45.455 0.00 0.00 0.00 3.36
4528 6095 3.742369 GTGGTTCGTTCGACAAATTCCTA 59.258 43.478 0.00 0.00 0.00 2.94
4529 6096 3.742369 TGGTTCGTTCGACAAATTCCTAC 59.258 43.478 0.00 0.00 0.00 3.18
4530 6097 3.124128 GGTTCGTTCGACAAATTCCTACC 59.876 47.826 0.00 0.00 0.00 3.18
4531 6098 3.947910 TCGTTCGACAAATTCCTACCT 57.052 42.857 0.00 0.00 0.00 3.08
4532 6099 3.841643 TCGTTCGACAAATTCCTACCTC 58.158 45.455 0.00 0.00 0.00 3.85
4533 6100 3.508793 TCGTTCGACAAATTCCTACCTCT 59.491 43.478 0.00 0.00 0.00 3.69
4534 6101 4.701651 TCGTTCGACAAATTCCTACCTCTA 59.298 41.667 0.00 0.00 0.00 2.43
4535 6102 5.359009 TCGTTCGACAAATTCCTACCTCTAT 59.641 40.000 0.00 0.00 0.00 1.98
4536 6103 6.543465 TCGTTCGACAAATTCCTACCTCTATA 59.457 38.462 0.00 0.00 0.00 1.31
4537 6104 7.230108 TCGTTCGACAAATTCCTACCTCTATAT 59.770 37.037 0.00 0.00 0.00 0.86
4538 6105 7.537991 CGTTCGACAAATTCCTACCTCTATATC 59.462 40.741 0.00 0.00 0.00 1.63
4539 6106 8.578151 GTTCGACAAATTCCTACCTCTATATCT 58.422 37.037 0.00 0.00 0.00 1.98
4540 6107 9.803507 TTCGACAAATTCCTACCTCTATATCTA 57.196 33.333 0.00 0.00 0.00 1.98
4541 6108 9.976776 TCGACAAATTCCTACCTCTATATCTAT 57.023 33.333 0.00 0.00 0.00 1.98
4549 6116 8.561536 TCCTACCTCTATATCTATCTCTGAGG 57.438 42.308 4.59 0.00 43.56 3.86
4554 6121 8.877864 CCTCTATATCTATCTCTGAGGTGTTT 57.122 38.462 4.59 0.00 36.00 2.83
4555 6122 8.739039 CCTCTATATCTATCTCTGAGGTGTTTG 58.261 40.741 4.59 0.00 36.00 2.93
4556 6123 8.642935 TCTATATCTATCTCTGAGGTGTTTGG 57.357 38.462 4.59 0.00 0.00 3.28
4557 6124 6.678568 ATATCTATCTCTGAGGTGTTTGGG 57.321 41.667 4.59 0.00 0.00 4.12
4558 6125 3.791320 TCTATCTCTGAGGTGTTTGGGT 58.209 45.455 4.59 0.00 0.00 4.51
4559 6126 4.168101 TCTATCTCTGAGGTGTTTGGGTT 58.832 43.478 4.59 0.00 0.00 4.11
4560 6127 3.884037 ATCTCTGAGGTGTTTGGGTTT 57.116 42.857 4.59 0.00 0.00 3.27
4561 6128 3.662759 TCTCTGAGGTGTTTGGGTTTT 57.337 42.857 4.59 0.00 0.00 2.43
4562 6129 3.287222 TCTCTGAGGTGTTTGGGTTTTG 58.713 45.455 4.59 0.00 0.00 2.44
4563 6130 1.754226 TCTGAGGTGTTTGGGTTTTGC 59.246 47.619 0.00 0.00 0.00 3.68
4564 6131 1.480137 CTGAGGTGTTTGGGTTTTGCA 59.520 47.619 0.00 0.00 0.00 4.08
4565 6132 1.902508 TGAGGTGTTTGGGTTTTGCAA 59.097 42.857 0.00 0.00 0.00 4.08
4566 6133 2.303022 TGAGGTGTTTGGGTTTTGCAAA 59.697 40.909 8.05 8.05 0.00 3.68
4567 6134 3.244561 TGAGGTGTTTGGGTTTTGCAAAA 60.245 39.130 20.46 20.46 0.00 2.44
4568 6135 3.078097 AGGTGTTTGGGTTTTGCAAAAC 58.922 40.909 36.15 36.15 45.70 2.43
4569 6136 3.078097 GGTGTTTGGGTTTTGCAAAACT 58.922 40.909 39.36 0.00 45.70 2.66
4570 6137 3.126171 GGTGTTTGGGTTTTGCAAAACTC 59.874 43.478 39.36 38.24 46.92 3.01
4571 6138 3.126171 GTGTTTGGGTTTTGCAAAACTCC 59.874 43.478 38.83 35.75 46.35 3.85
4572 6139 3.244561 TGTTTGGGTTTTGCAAAACTCCA 60.245 39.130 38.83 37.24 46.35 3.86
4573 6140 3.922171 TTGGGTTTTGCAAAACTCCAT 57.078 38.095 37.74 0.00 46.35 3.41
4574 6141 5.119694 GTTTGGGTTTTGCAAAACTCCATA 58.880 37.500 37.74 33.57 46.35 2.74
4575 6142 4.599047 TGGGTTTTGCAAAACTCCATAG 57.401 40.909 38.83 0.00 46.35 2.23
4576 6143 4.219115 TGGGTTTTGCAAAACTCCATAGA 58.781 39.130 38.83 24.40 46.35 1.98
4577 6144 4.038642 TGGGTTTTGCAAAACTCCATAGAC 59.961 41.667 38.83 25.45 46.35 2.59
4578 6145 4.038642 GGGTTTTGCAAAACTCCATAGACA 59.961 41.667 39.36 10.73 45.70 3.41
4579 6146 5.279456 GGGTTTTGCAAAACTCCATAGACAT 60.279 40.000 39.36 0.00 45.70 3.06
4580 6147 5.634859 GGTTTTGCAAAACTCCATAGACATG 59.365 40.000 39.36 0.00 45.70 3.21
4581 6148 4.439305 TTGCAAAACTCCATAGACATGC 57.561 40.909 0.00 0.00 0.00 4.06
4582 6149 3.419943 TGCAAAACTCCATAGACATGCA 58.580 40.909 0.00 0.00 36.36 3.96
4583 6150 3.441222 TGCAAAACTCCATAGACATGCAG 59.559 43.478 0.00 0.00 34.98 4.41
4584 6151 3.691118 GCAAAACTCCATAGACATGCAGA 59.309 43.478 0.00 0.00 32.23 4.26
4585 6152 4.156556 GCAAAACTCCATAGACATGCAGAA 59.843 41.667 0.00 0.00 32.23 3.02
4586 6153 5.675575 GCAAAACTCCATAGACATGCAGAAG 60.676 44.000 0.00 0.00 32.23 2.85
4587 6154 5.426689 AAACTCCATAGACATGCAGAAGA 57.573 39.130 0.00 0.00 0.00 2.87
4588 6155 4.669206 ACTCCATAGACATGCAGAAGAG 57.331 45.455 0.00 0.00 0.00 2.85
4589 6156 4.285020 ACTCCATAGACATGCAGAAGAGA 58.715 43.478 0.00 0.00 0.00 3.10
4590 6157 4.713814 ACTCCATAGACATGCAGAAGAGAA 59.286 41.667 0.00 0.00 0.00 2.87
4591 6158 5.188555 ACTCCATAGACATGCAGAAGAGAAA 59.811 40.000 0.00 0.00 0.00 2.52
4592 6159 6.126825 ACTCCATAGACATGCAGAAGAGAAAT 60.127 38.462 0.00 0.00 0.00 2.17
4593 6160 6.053650 TCCATAGACATGCAGAAGAGAAATG 58.946 40.000 0.00 0.00 0.00 2.32
4594 6161 5.277876 CCATAGACATGCAGAAGAGAAATGC 60.278 44.000 0.00 0.00 40.40 3.56
4595 6162 3.952931 AGACATGCAGAAGAGAAATGCT 58.047 40.909 0.00 0.00 40.62 3.79
4596 6163 5.095145 AGACATGCAGAAGAGAAATGCTA 57.905 39.130 0.00 0.00 40.62 3.49
4597 6164 5.682659 AGACATGCAGAAGAGAAATGCTAT 58.317 37.500 0.00 0.00 40.62 2.97
4598 6165 5.759273 AGACATGCAGAAGAGAAATGCTATC 59.241 40.000 0.00 0.00 40.62 2.08
4599 6166 4.820716 ACATGCAGAAGAGAAATGCTATCC 59.179 41.667 0.00 0.00 40.62 2.59
4600 6167 3.813443 TGCAGAAGAGAAATGCTATCCC 58.187 45.455 0.00 0.00 40.62 3.85
4601 6168 3.145286 GCAGAAGAGAAATGCTATCCCC 58.855 50.000 0.00 0.00 37.00 4.81
4602 6169 3.434167 GCAGAAGAGAAATGCTATCCCCA 60.434 47.826 0.00 0.00 37.00 4.96
4603 6170 4.133078 CAGAAGAGAAATGCTATCCCCAC 58.867 47.826 0.00 0.00 0.00 4.61
4604 6171 4.043596 AGAAGAGAAATGCTATCCCCACT 58.956 43.478 0.00 0.00 0.00 4.00
4605 6172 4.102367 AGAAGAGAAATGCTATCCCCACTC 59.898 45.833 0.00 0.00 0.00 3.51
4606 6173 2.708325 AGAGAAATGCTATCCCCACTCC 59.292 50.000 0.00 0.00 0.00 3.85
4607 6174 1.417890 AGAAATGCTATCCCCACTCCG 59.582 52.381 0.00 0.00 0.00 4.63
4608 6175 1.416401 GAAATGCTATCCCCACTCCGA 59.584 52.381 0.00 0.00 0.00 4.55
4609 6176 0.759346 AATGCTATCCCCACTCCGAC 59.241 55.000 0.00 0.00 0.00 4.79
4610 6177 1.122019 ATGCTATCCCCACTCCGACC 61.122 60.000 0.00 0.00 0.00 4.79
4611 6178 1.760875 GCTATCCCCACTCCGACCA 60.761 63.158 0.00 0.00 0.00 4.02
4612 6179 1.335132 GCTATCCCCACTCCGACCAA 61.335 60.000 0.00 0.00 0.00 3.67
4613 6180 0.753262 CTATCCCCACTCCGACCAAG 59.247 60.000 0.00 0.00 0.00 3.61
4614 6181 0.337082 TATCCCCACTCCGACCAAGA 59.663 55.000 0.00 0.00 0.00 3.02
4615 6182 0.326618 ATCCCCACTCCGACCAAGAT 60.327 55.000 0.00 0.00 0.00 2.40
4616 6183 0.337082 TCCCCACTCCGACCAAGATA 59.663 55.000 0.00 0.00 0.00 1.98
4617 6184 0.753262 CCCCACTCCGACCAAGATAG 59.247 60.000 0.00 0.00 0.00 2.08
4618 6185 1.688311 CCCCACTCCGACCAAGATAGA 60.688 57.143 0.00 0.00 0.00 1.98
4619 6186 2.108168 CCCACTCCGACCAAGATAGAA 58.892 52.381 0.00 0.00 0.00 2.10
4620 6187 2.159085 CCCACTCCGACCAAGATAGAAC 60.159 54.545 0.00 0.00 0.00 3.01
4621 6188 2.761208 CCACTCCGACCAAGATAGAACT 59.239 50.000 0.00 0.00 0.00 3.01
4622 6189 3.195825 CCACTCCGACCAAGATAGAACTT 59.804 47.826 0.00 0.00 0.00 2.66
4623 6190 4.322801 CCACTCCGACCAAGATAGAACTTT 60.323 45.833 0.00 0.00 0.00 2.66
4624 6191 5.238583 CACTCCGACCAAGATAGAACTTTT 58.761 41.667 0.00 0.00 0.00 2.27
4625 6192 6.395629 CACTCCGACCAAGATAGAACTTTTA 58.604 40.000 0.00 0.00 0.00 1.52
4626 6193 6.310711 CACTCCGACCAAGATAGAACTTTTAC 59.689 42.308 0.00 0.00 0.00 2.01
4627 6194 5.727434 TCCGACCAAGATAGAACTTTTACC 58.273 41.667 0.00 0.00 0.00 2.85
4628 6195 5.246656 TCCGACCAAGATAGAACTTTTACCA 59.753 40.000 0.00 0.00 0.00 3.25
4629 6196 5.935789 CCGACCAAGATAGAACTTTTACCAA 59.064 40.000 0.00 0.00 0.00 3.67
4630 6197 6.428771 CCGACCAAGATAGAACTTTTACCAAA 59.571 38.462 0.00 0.00 0.00 3.28
4631 6198 7.040961 CCGACCAAGATAGAACTTTTACCAAAA 60.041 37.037 0.00 0.00 0.00 2.44
5052 9121 4.529377 ACGGGTAGTTCCTACAAAGAATCA 59.471 41.667 4.01 0.00 38.58 2.57
5068 9137 9.737427 ACAAAGAATCAGACTAATGACGTATAG 57.263 33.333 0.00 0.00 30.46 1.31
5539 9609 4.750598 ACTCTAGTCGTTGCTTTTCTTTCC 59.249 41.667 0.00 0.00 0.00 3.13
5565 9635 4.409697 ACTTCGAAAGTAGCTGCTTCAGC 61.410 47.826 17.87 10.57 45.08 4.26
5651 9721 8.783660 TCTTCTTCTGGAAATCCTAGCTATTA 57.216 34.615 0.00 0.00 36.82 0.98
5719 9789 5.809719 TGAAACGTATGCTTGCATATTCA 57.190 34.783 16.86 17.76 0.00 2.57
5905 10266 7.227049 TCGAGATTATGCAGGATTATACACA 57.773 36.000 0.00 0.00 0.00 3.72
6059 10420 3.628008 TCAATAGGACTCCTTACGAGCA 58.372 45.455 1.94 0.00 43.01 4.26
6385 10746 7.148623 GCGCTAGGGTTATGAACTTATAATCAC 60.149 40.741 8.77 0.00 0.00 3.06
6864 11225 3.772387 TGCCTTGATGGTGAAATGGTAA 58.228 40.909 0.00 0.00 38.35 2.85
6896 11257 4.573900 ACTCAAAATCTCGTGCTGAAGAT 58.426 39.130 0.00 0.00 0.00 2.40
6907 11268 1.347707 TGCTGAAGATCGTGGAGGTTT 59.652 47.619 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.138290 TCTTCAAATACGGCTTTCCACAA 58.862 39.130 0.00 0.00 0.00 3.33
495 498 9.973661 TTCCTTGTTTAGATCCTATTTCAATCA 57.026 29.630 0.00 0.00 0.00 2.57
638 641 1.674359 TGAGTCGCTTCCTTTTTGCA 58.326 45.000 0.00 0.00 0.00 4.08
775 778 4.888038 TTCGAGAAAGATATCGTCCGAA 57.112 40.909 19.43 19.43 40.97 4.30
838 841 2.903404 CCTCGAGAGGGCTTAGGTT 58.097 57.895 15.71 0.00 44.87 3.50
964 967 4.347607 CATCCAATCTCCAAAAAGTCCCT 58.652 43.478 0.00 0.00 0.00 4.20
1138 1141 7.474398 TTTGATCAGAGATTGAATCGATCAC 57.526 36.000 17.83 6.54 39.77 3.06
1151 1154 6.881065 CCAAGGTCTATGTTTTTGATCAGAGA 59.119 38.462 0.00 0.00 30.98 3.10
1165 1168 8.428063 AGAGATGAAATAGAACCAAGGTCTATG 58.572 37.037 3.01 0.00 0.00 2.23
1623 1626 6.072286 TCACAATTTCTTGAAGCTCAATCTCC 60.072 38.462 0.00 0.00 35.59 3.71
1629 1633 4.261155 CCGTTCACAATTTCTTGAAGCTCA 60.261 41.667 0.00 0.00 36.20 4.26
2033 2037 7.700322 CAAGCATTGTATACGTCATTAGTCT 57.300 36.000 0.00 0.00 42.34 3.24
2959 3489 6.547510 GGTTTCTCTTGGCTATATGGTTCATT 59.452 38.462 0.00 0.00 0.00 2.57
4354 5921 4.222114 CCGTTCACAATTTCTTGAAGCTC 58.778 43.478 0.00 0.00 36.20 4.09
4355 5922 3.632145 ACCGTTCACAATTTCTTGAAGCT 59.368 39.130 0.00 0.00 36.20 3.74
4356 5923 3.964909 ACCGTTCACAATTTCTTGAAGC 58.035 40.909 0.00 0.00 36.20 3.86
4357 5924 5.424121 AGACCGTTCACAATTTCTTGAAG 57.576 39.130 0.00 0.00 36.20 3.02
4358 5925 5.828299 AAGACCGTTCACAATTTCTTGAA 57.172 34.783 0.00 0.00 36.20 2.69
4359 5926 6.708502 TGATAAGACCGTTCACAATTTCTTGA 59.291 34.615 0.00 0.00 36.20 3.02
4360 5927 6.898041 TGATAAGACCGTTCACAATTTCTTG 58.102 36.000 0.00 0.00 38.39 3.02
4361 5928 7.504924 TTGATAAGACCGTTCACAATTTCTT 57.495 32.000 0.00 0.00 0.00 2.52
4362 5929 7.687941 ATTGATAAGACCGTTCACAATTTCT 57.312 32.000 0.00 0.00 0.00 2.52
4363 5930 8.447833 TGTATTGATAAGACCGTTCACAATTTC 58.552 33.333 0.00 0.00 0.00 2.17
4364 5931 8.234546 GTGTATTGATAAGACCGTTCACAATTT 58.765 33.333 0.00 0.00 0.00 1.82
4365 5932 7.389330 TGTGTATTGATAAGACCGTTCACAATT 59.611 33.333 0.00 0.00 0.00 2.32
4366 5933 6.876789 TGTGTATTGATAAGACCGTTCACAAT 59.123 34.615 0.00 0.00 0.00 2.71
4367 5934 6.224584 TGTGTATTGATAAGACCGTTCACAA 58.775 36.000 0.00 0.00 0.00 3.33
4368 5935 5.785243 TGTGTATTGATAAGACCGTTCACA 58.215 37.500 0.00 0.00 0.00 3.58
4369 5936 6.715344 TTGTGTATTGATAAGACCGTTCAC 57.285 37.500 0.00 0.00 0.00 3.18
4370 5937 7.389330 ACATTTGTGTATTGATAAGACCGTTCA 59.611 33.333 0.00 0.00 0.00 3.18
4371 5938 7.748847 ACATTTGTGTATTGATAAGACCGTTC 58.251 34.615 0.00 0.00 0.00 3.95
4372 5939 7.681939 ACATTTGTGTATTGATAAGACCGTT 57.318 32.000 0.00 0.00 0.00 4.44
4373 5940 8.958119 ATACATTTGTGTATTGATAAGACCGT 57.042 30.769 0.00 0.00 31.53 4.83
4380 5947 9.787435 GGGGAGTTATACATTTGTGTATTGATA 57.213 33.333 6.41 0.00 36.50 2.15
4381 5948 8.278639 TGGGGAGTTATACATTTGTGTATTGAT 58.721 33.333 6.41 0.00 36.50 2.57
4382 5949 7.634718 TGGGGAGTTATACATTTGTGTATTGA 58.365 34.615 6.41 0.00 36.50 2.57
4383 5950 7.013274 CCTGGGGAGTTATACATTTGTGTATTG 59.987 40.741 6.41 0.00 36.50 1.90
4384 5951 7.060421 CCTGGGGAGTTATACATTTGTGTATT 58.940 38.462 6.41 0.00 36.50 1.89
4385 5952 6.388689 TCCTGGGGAGTTATACATTTGTGTAT 59.611 38.462 6.36 6.36 38.42 2.29
4386 5953 5.727279 TCCTGGGGAGTTATACATTTGTGTA 59.273 40.000 0.00 0.00 0.00 2.90
4387 5954 4.538490 TCCTGGGGAGTTATACATTTGTGT 59.462 41.667 0.00 0.00 0.00 3.72
4388 5955 5.110814 TCCTGGGGAGTTATACATTTGTG 57.889 43.478 0.00 0.00 0.00 3.33
4389 5956 5.789574 TTCCTGGGGAGTTATACATTTGT 57.210 39.130 0.00 0.00 31.21 2.83
4390 5957 7.341769 TGAAATTCCTGGGGAGTTATACATTTG 59.658 37.037 0.00 0.00 30.35 2.32
4391 5958 7.418378 TGAAATTCCTGGGGAGTTATACATTT 58.582 34.615 0.00 0.00 30.35 2.32
4392 5959 6.980577 TGAAATTCCTGGGGAGTTATACATT 58.019 36.000 0.00 0.00 30.35 2.71
4393 5960 6.590656 TGAAATTCCTGGGGAGTTATACAT 57.409 37.500 0.00 0.00 30.35 2.29
4394 5961 6.395780 TTGAAATTCCTGGGGAGTTATACA 57.604 37.500 0.00 0.00 30.35 2.29
4395 5962 7.684428 GCAATTGAAATTCCTGGGGAGTTATAC 60.684 40.741 10.34 0.00 30.35 1.47
4396 5963 6.323739 GCAATTGAAATTCCTGGGGAGTTATA 59.676 38.462 10.34 0.00 30.35 0.98
4397 5964 5.129320 GCAATTGAAATTCCTGGGGAGTTAT 59.871 40.000 10.34 0.00 30.35 1.89
4398 5965 4.466015 GCAATTGAAATTCCTGGGGAGTTA 59.534 41.667 10.34 0.00 30.35 2.24
4399 5966 3.261643 GCAATTGAAATTCCTGGGGAGTT 59.738 43.478 10.34 0.00 33.01 3.01
4400 5967 2.833943 GCAATTGAAATTCCTGGGGAGT 59.166 45.455 10.34 0.00 31.21 3.85
4401 5968 2.159198 CGCAATTGAAATTCCTGGGGAG 60.159 50.000 10.34 0.00 31.21 4.30
4402 5969 1.824230 CGCAATTGAAATTCCTGGGGA 59.176 47.619 10.34 0.00 0.00 4.81
4403 5970 1.740043 GCGCAATTGAAATTCCTGGGG 60.740 52.381 10.34 0.00 0.00 4.96
4404 5971 1.205417 AGCGCAATTGAAATTCCTGGG 59.795 47.619 11.47 0.00 0.00 4.45
4405 5972 2.660189 AGCGCAATTGAAATTCCTGG 57.340 45.000 11.47 0.00 0.00 4.45
4406 5973 6.583806 GGATATAAGCGCAATTGAAATTCCTG 59.416 38.462 11.47 0.00 0.00 3.86
4407 5974 6.265196 TGGATATAAGCGCAATTGAAATTCCT 59.735 34.615 11.47 0.00 0.00 3.36
4408 5975 6.446318 TGGATATAAGCGCAATTGAAATTCC 58.554 36.000 11.47 4.52 0.00 3.01
4409 5976 7.809331 TGATGGATATAAGCGCAATTGAAATTC 59.191 33.333 11.47 0.00 0.00 2.17
4410 5977 7.596248 GTGATGGATATAAGCGCAATTGAAATT 59.404 33.333 11.47 2.25 0.00 1.82
4411 5978 7.040201 AGTGATGGATATAAGCGCAATTGAAAT 60.040 33.333 11.47 0.00 0.00 2.17
4412 5979 6.262944 AGTGATGGATATAAGCGCAATTGAAA 59.737 34.615 11.47 0.00 0.00 2.69
4413 5980 5.764686 AGTGATGGATATAAGCGCAATTGAA 59.235 36.000 11.47 0.00 0.00 2.69
4414 5981 5.179929 CAGTGATGGATATAAGCGCAATTGA 59.820 40.000 11.47 0.00 0.00 2.57
4415 5982 5.049198 ACAGTGATGGATATAAGCGCAATTG 60.049 40.000 11.47 0.00 0.00 2.32
4416 5983 5.065914 ACAGTGATGGATATAAGCGCAATT 58.934 37.500 11.47 0.00 0.00 2.32
4417 5984 4.645535 ACAGTGATGGATATAAGCGCAAT 58.354 39.130 11.47 5.17 0.00 3.56
4418 5985 4.071961 ACAGTGATGGATATAAGCGCAA 57.928 40.909 11.47 0.00 0.00 4.85
4419 5986 3.751479 ACAGTGATGGATATAAGCGCA 57.249 42.857 11.47 0.00 0.00 6.09
4420 5987 4.082190 TCCTACAGTGATGGATATAAGCGC 60.082 45.833 0.00 0.00 0.00 5.92
4421 5988 5.184096 AGTCCTACAGTGATGGATATAAGCG 59.816 44.000 10.91 0.00 32.03 4.68
4422 5989 6.597832 AGTCCTACAGTGATGGATATAAGC 57.402 41.667 10.91 0.27 32.03 3.09
4423 5990 7.382110 CCAAGTCCTACAGTGATGGATATAAG 58.618 42.308 10.91 2.92 32.03 1.73
4424 5991 6.270000 CCCAAGTCCTACAGTGATGGATATAA 59.730 42.308 10.91 0.00 32.03 0.98
4425 5992 5.780282 CCCAAGTCCTACAGTGATGGATATA 59.220 44.000 10.91 0.00 32.03 0.86
4426 5993 4.594920 CCCAAGTCCTACAGTGATGGATAT 59.405 45.833 10.91 2.92 32.03 1.63
4427 5994 3.967326 CCCAAGTCCTACAGTGATGGATA 59.033 47.826 10.91 0.00 32.03 2.59
4428 5995 2.774234 CCCAAGTCCTACAGTGATGGAT 59.226 50.000 10.91 0.00 32.03 3.41
4429 5996 2.187958 CCCAAGTCCTACAGTGATGGA 58.812 52.381 0.00 0.47 0.00 3.41
4430 5997 1.909302 ACCCAAGTCCTACAGTGATGG 59.091 52.381 0.00 0.00 0.00 3.51
4431 5998 3.703001 AACCCAAGTCCTACAGTGATG 57.297 47.619 0.00 0.00 0.00 3.07
4432 5999 5.803470 GCTTAAACCCAAGTCCTACAGTGAT 60.803 44.000 0.00 0.00 0.00 3.06
4433 6000 4.504340 GCTTAAACCCAAGTCCTACAGTGA 60.504 45.833 0.00 0.00 0.00 3.41
4434 6001 3.751698 GCTTAAACCCAAGTCCTACAGTG 59.248 47.826 0.00 0.00 0.00 3.66
4435 6002 3.651423 AGCTTAAACCCAAGTCCTACAGT 59.349 43.478 0.00 0.00 0.00 3.55
4436 6003 4.287766 AGCTTAAACCCAAGTCCTACAG 57.712 45.455 0.00 0.00 0.00 2.74
4437 6004 4.717279 AAGCTTAAACCCAAGTCCTACA 57.283 40.909 0.00 0.00 0.00 2.74
4438 6005 4.458295 GGAAAGCTTAAACCCAAGTCCTAC 59.542 45.833 0.00 0.00 0.00 3.18
4439 6006 4.507869 GGGAAAGCTTAAACCCAAGTCCTA 60.508 45.833 23.00 0.00 41.72 2.94
4440 6007 3.497332 GGAAAGCTTAAACCCAAGTCCT 58.503 45.455 0.00 0.00 0.00 3.85
4441 6008 2.561419 GGGAAAGCTTAAACCCAAGTCC 59.439 50.000 23.00 13.32 41.72 3.85
4442 6009 2.561419 GGGGAAAGCTTAAACCCAAGTC 59.439 50.000 26.54 13.09 43.67 3.01
4443 6010 2.605257 GGGGAAAGCTTAAACCCAAGT 58.395 47.619 26.54 0.58 43.67 3.16
4447 6014 0.895530 GCTGGGGAAAGCTTAAACCC 59.104 55.000 20.52 20.52 40.20 4.11
4448 6015 0.895530 GGCTGGGGAAAGCTTAAACC 59.104 55.000 0.00 3.98 43.06 3.27
4449 6016 0.895530 GGGCTGGGGAAAGCTTAAAC 59.104 55.000 0.00 0.00 43.06 2.01
4450 6017 0.252057 GGGGCTGGGGAAAGCTTAAA 60.252 55.000 0.00 0.00 43.06 1.52
4451 6018 1.146544 AGGGGCTGGGGAAAGCTTAA 61.147 55.000 0.00 0.00 43.06 1.85
4452 6019 1.146544 AAGGGGCTGGGGAAAGCTTA 61.147 55.000 0.00 0.00 43.06 3.09
4453 6020 2.036065 AAAGGGGCTGGGGAAAGCTT 62.036 55.000 0.00 0.00 43.06 3.74
4454 6021 2.036065 AAAAGGGGCTGGGGAAAGCT 62.036 55.000 0.00 0.00 43.06 3.74
4455 6022 1.536418 AAAAGGGGCTGGGGAAAGC 60.536 57.895 0.00 0.00 42.75 3.51
4456 6023 0.178935 TGAAAAGGGGCTGGGGAAAG 60.179 55.000 0.00 0.00 0.00 2.62
4457 6024 0.491371 ATGAAAAGGGGCTGGGGAAA 59.509 50.000 0.00 0.00 0.00 3.13
4458 6025 0.041090 GATGAAAAGGGGCTGGGGAA 59.959 55.000 0.00 0.00 0.00 3.97
4459 6026 1.145900 TGATGAAAAGGGGCTGGGGA 61.146 55.000 0.00 0.00 0.00 4.81
4460 6027 0.252193 TTGATGAAAAGGGGCTGGGG 60.252 55.000 0.00 0.00 0.00 4.96
4461 6028 1.483415 CATTGATGAAAAGGGGCTGGG 59.517 52.381 0.00 0.00 0.00 4.45
4462 6029 1.483415 CCATTGATGAAAAGGGGCTGG 59.517 52.381 0.00 0.00 0.00 4.85
4463 6030 2.167075 GTCCATTGATGAAAAGGGGCTG 59.833 50.000 0.00 0.00 32.90 4.85
4464 6031 2.043526 AGTCCATTGATGAAAAGGGGCT 59.956 45.455 0.00 0.00 40.94 5.19
4465 6032 2.428530 GAGTCCATTGATGAAAAGGGGC 59.571 50.000 0.00 0.00 35.85 5.80
4466 6033 3.026694 GGAGTCCATTGATGAAAAGGGG 58.973 50.000 3.60 0.00 31.82 4.79
4467 6034 3.698040 CAGGAGTCCATTGATGAAAAGGG 59.302 47.826 12.86 0.00 32.18 3.95
4468 6035 4.397417 GTCAGGAGTCCATTGATGAAAAGG 59.603 45.833 12.86 0.00 0.00 3.11
4469 6036 4.093998 CGTCAGGAGTCCATTGATGAAAAG 59.906 45.833 12.86 0.00 31.12 2.27
4470 6037 4.002982 CGTCAGGAGTCCATTGATGAAAA 58.997 43.478 12.86 0.00 31.12 2.29
4471 6038 3.007940 ACGTCAGGAGTCCATTGATGAAA 59.992 43.478 21.63 0.00 33.25 2.69
4472 6039 2.567169 ACGTCAGGAGTCCATTGATGAA 59.433 45.455 21.63 0.00 33.25 2.57
4473 6040 2.166459 GACGTCAGGAGTCCATTGATGA 59.834 50.000 21.63 10.10 33.25 2.92
4474 6041 2.167281 AGACGTCAGGAGTCCATTGATG 59.833 50.000 19.50 14.63 39.31 3.07
4475 6042 2.461695 AGACGTCAGGAGTCCATTGAT 58.538 47.619 19.50 0.00 39.31 2.57
4476 6043 1.924731 AGACGTCAGGAGTCCATTGA 58.075 50.000 19.50 4.30 39.31 2.57
4477 6044 2.478031 CGTAGACGTCAGGAGTCCATTG 60.478 54.545 19.50 1.50 39.31 2.82
4478 6045 1.743958 CGTAGACGTCAGGAGTCCATT 59.256 52.381 19.50 0.00 39.31 3.16
4479 6046 1.065636 TCGTAGACGTCAGGAGTCCAT 60.066 52.381 19.50 0.00 39.31 3.41
4480 6047 0.322648 TCGTAGACGTCAGGAGTCCA 59.677 55.000 19.50 0.00 39.31 4.02
4481 6048 1.397692 CTTCGTAGACGTCAGGAGTCC 59.602 57.143 19.50 0.00 39.31 3.85
4482 6049 1.397692 CCTTCGTAGACGTCAGGAGTC 59.602 57.143 19.50 0.38 40.73 3.36
4483 6050 1.002888 TCCTTCGTAGACGTCAGGAGT 59.997 52.381 19.50 0.00 41.50 3.85
4484 6051 1.735386 TCCTTCGTAGACGTCAGGAG 58.265 55.000 19.50 12.15 41.50 3.69
4485 6052 1.002888 ACTCCTTCGTAGACGTCAGGA 59.997 52.381 19.50 18.48 42.92 3.86
4486 6053 1.130749 CACTCCTTCGTAGACGTCAGG 59.869 57.143 19.50 15.09 40.11 3.86
4487 6054 1.805345 ACACTCCTTCGTAGACGTCAG 59.195 52.381 19.50 8.82 40.80 3.51
4488 6055 1.534163 CACACTCCTTCGTAGACGTCA 59.466 52.381 19.50 0.48 40.80 4.35
4489 6056 1.135746 CCACACTCCTTCGTAGACGTC 60.136 57.143 7.70 7.70 40.80 4.34
4490 6057 0.879765 CCACACTCCTTCGTAGACGT 59.120 55.000 1.46 0.00 40.80 4.34
4491 6058 0.879765 ACCACACTCCTTCGTAGACG 59.120 55.000 0.00 0.00 34.32 4.18
4492 6059 2.667724 CGAACCACACTCCTTCGTAGAC 60.668 54.545 0.00 0.00 34.32 2.59
4493 6060 1.538512 CGAACCACACTCCTTCGTAGA 59.461 52.381 0.00 0.00 33.64 2.59
4494 6061 1.268899 ACGAACCACACTCCTTCGTAG 59.731 52.381 2.99 0.00 46.09 3.51
4495 6062 1.321474 ACGAACCACACTCCTTCGTA 58.679 50.000 2.99 0.00 46.09 3.43
4496 6063 2.121645 ACGAACCACACTCCTTCGT 58.878 52.632 0.00 0.00 43.86 3.85
4497 6064 1.137513 GAACGAACCACACTCCTTCG 58.862 55.000 0.00 0.00 41.99 3.79
4498 6065 1.137513 CGAACGAACCACACTCCTTC 58.862 55.000 0.00 0.00 0.00 3.46
4499 6066 0.748450 TCGAACGAACCACACTCCTT 59.252 50.000 0.00 0.00 0.00 3.36
4500 6067 0.031721 GTCGAACGAACCACACTCCT 59.968 55.000 0.00 0.00 0.00 3.69
4501 6068 0.249155 TGTCGAACGAACCACACTCC 60.249 55.000 0.00 0.00 0.00 3.85
4502 6069 1.563111 TTGTCGAACGAACCACACTC 58.437 50.000 0.00 0.00 0.00 3.51
4503 6070 2.012937 TTTGTCGAACGAACCACACT 57.987 45.000 0.00 0.00 0.00 3.55
4504 6071 3.285745 GAATTTGTCGAACGAACCACAC 58.714 45.455 0.00 0.00 0.00 3.82
4505 6072 2.288458 GGAATTTGTCGAACGAACCACA 59.712 45.455 0.00 0.00 0.00 4.17
4506 6073 2.546789 AGGAATTTGTCGAACGAACCAC 59.453 45.455 0.00 0.00 0.00 4.16
4507 6074 2.841215 AGGAATTTGTCGAACGAACCA 58.159 42.857 0.00 0.00 0.00 3.67
4508 6075 3.124128 GGTAGGAATTTGTCGAACGAACC 59.876 47.826 0.00 0.00 0.00 3.62
4509 6076 3.992427 AGGTAGGAATTTGTCGAACGAAC 59.008 43.478 0.00 0.00 0.00 3.95
4510 6077 4.021719 AGAGGTAGGAATTTGTCGAACGAA 60.022 41.667 0.00 0.00 0.00 3.85
4511 6078 3.508793 AGAGGTAGGAATTTGTCGAACGA 59.491 43.478 0.00 0.00 0.00 3.85
4512 6079 3.846360 AGAGGTAGGAATTTGTCGAACG 58.154 45.455 0.00 0.00 0.00 3.95
4513 6080 8.578151 AGATATAGAGGTAGGAATTTGTCGAAC 58.422 37.037 0.00 0.00 0.00 3.95
4514 6081 8.707796 AGATATAGAGGTAGGAATTTGTCGAA 57.292 34.615 0.00 0.00 0.00 3.71
4515 6082 9.976776 ATAGATATAGAGGTAGGAATTTGTCGA 57.023 33.333 0.00 0.00 0.00 4.20
4523 6090 8.998814 CCTCAGAGATAGATATAGAGGTAGGAA 58.001 40.741 0.00 0.00 37.11 3.36
4524 6091 8.561536 CCTCAGAGATAGATATAGAGGTAGGA 57.438 42.308 0.00 0.00 37.11 2.94
4529 6096 8.739039 CAAACACCTCAGAGATAGATATAGAGG 58.261 40.741 0.00 0.00 45.07 3.69
4530 6097 8.739039 CCAAACACCTCAGAGATAGATATAGAG 58.261 40.741 0.00 0.00 0.00 2.43
4531 6098 7.671819 CCCAAACACCTCAGAGATAGATATAGA 59.328 40.741 0.00 0.00 0.00 1.98
4532 6099 7.453126 ACCCAAACACCTCAGAGATAGATATAG 59.547 40.741 0.00 0.00 0.00 1.31
4533 6100 7.306013 ACCCAAACACCTCAGAGATAGATATA 58.694 38.462 0.00 0.00 0.00 0.86
4534 6101 6.146760 ACCCAAACACCTCAGAGATAGATAT 58.853 40.000 0.00 0.00 0.00 1.63
4535 6102 5.529289 ACCCAAACACCTCAGAGATAGATA 58.471 41.667 0.00 0.00 0.00 1.98
4536 6103 4.366267 ACCCAAACACCTCAGAGATAGAT 58.634 43.478 0.00 0.00 0.00 1.98
4537 6104 3.791320 ACCCAAACACCTCAGAGATAGA 58.209 45.455 0.00 0.00 0.00 1.98
4538 6105 4.559862 AACCCAAACACCTCAGAGATAG 57.440 45.455 0.00 0.00 0.00 2.08
4539 6106 4.993705 AAACCCAAACACCTCAGAGATA 57.006 40.909 0.00 0.00 0.00 1.98
4540 6107 3.884037 AAACCCAAACACCTCAGAGAT 57.116 42.857 0.00 0.00 0.00 2.75
4541 6108 3.287222 CAAAACCCAAACACCTCAGAGA 58.713 45.455 0.00 0.00 0.00 3.10
4542 6109 2.223805 GCAAAACCCAAACACCTCAGAG 60.224 50.000 0.00 0.00 0.00 3.35
4543 6110 1.754226 GCAAAACCCAAACACCTCAGA 59.246 47.619 0.00 0.00 0.00 3.27
4544 6111 1.480137 TGCAAAACCCAAACACCTCAG 59.520 47.619 0.00 0.00 0.00 3.35
4545 6112 1.561643 TGCAAAACCCAAACACCTCA 58.438 45.000 0.00 0.00 0.00 3.86
4546 6113 2.682155 TTGCAAAACCCAAACACCTC 57.318 45.000 0.00 0.00 0.00 3.85
4547 6114 3.078097 GTTTTGCAAAACCCAAACACCT 58.922 40.909 34.76 0.00 41.77 4.00
4548 6115 3.479505 GTTTTGCAAAACCCAAACACC 57.520 42.857 34.76 14.06 41.77 4.16
4556 6123 7.769620 GCATGTCTATGGAGTTTTGCAAAACC 61.770 42.308 38.50 30.69 40.50 3.27
4557 6124 5.119125 GCATGTCTATGGAGTTTTGCAAAAC 59.881 40.000 36.64 36.64 40.25 2.43
4558 6125 5.221402 TGCATGTCTATGGAGTTTTGCAAAA 60.221 36.000 20.46 20.46 36.06 2.44
4559 6126 4.280425 TGCATGTCTATGGAGTTTTGCAAA 59.720 37.500 8.05 8.05 36.06 3.68
4560 6127 3.825585 TGCATGTCTATGGAGTTTTGCAA 59.174 39.130 0.00 0.00 36.06 4.08
4561 6128 3.419943 TGCATGTCTATGGAGTTTTGCA 58.580 40.909 0.00 0.00 36.58 4.08
4562 6129 4.025015 CTGCATGTCTATGGAGTTTTGC 57.975 45.455 0.00 0.00 44.83 3.68
4569 6136 5.682234 TTTCTCTTCTGCATGTCTATGGA 57.318 39.130 0.00 0.00 34.79 3.41
4570 6137 5.277876 GCATTTCTCTTCTGCATGTCTATGG 60.278 44.000 0.00 0.00 35.96 2.74
4571 6138 5.527951 AGCATTTCTCTTCTGCATGTCTATG 59.472 40.000 0.00 0.00 38.37 2.23
4572 6139 5.682659 AGCATTTCTCTTCTGCATGTCTAT 58.317 37.500 0.00 0.00 38.37 1.98
4573 6140 5.095145 AGCATTTCTCTTCTGCATGTCTA 57.905 39.130 0.00 0.00 38.37 2.59
4574 6141 3.952931 AGCATTTCTCTTCTGCATGTCT 58.047 40.909 0.00 0.00 38.37 3.41
4575 6142 5.049543 GGATAGCATTTCTCTTCTGCATGTC 60.050 44.000 0.00 0.00 38.37 3.06
4576 6143 4.820716 GGATAGCATTTCTCTTCTGCATGT 59.179 41.667 0.00 0.00 38.37 3.21
4577 6144 4.215827 GGGATAGCATTTCTCTTCTGCATG 59.784 45.833 0.00 0.00 38.37 4.06
4578 6145 4.396522 GGGATAGCATTTCTCTTCTGCAT 58.603 43.478 0.00 0.00 38.37 3.96
4579 6146 3.434167 GGGGATAGCATTTCTCTTCTGCA 60.434 47.826 0.00 0.00 38.37 4.41
4580 6147 3.145286 GGGGATAGCATTTCTCTTCTGC 58.855 50.000 0.00 0.00 36.15 4.26
4581 6148 4.133078 GTGGGGATAGCATTTCTCTTCTG 58.867 47.826 0.00 0.00 0.00 3.02
4582 6149 4.043596 AGTGGGGATAGCATTTCTCTTCT 58.956 43.478 0.00 0.00 0.00 2.85
4583 6150 4.384940 GAGTGGGGATAGCATTTCTCTTC 58.615 47.826 0.00 0.00 0.00 2.87
4584 6151 3.137360 GGAGTGGGGATAGCATTTCTCTT 59.863 47.826 0.00 0.00 0.00 2.85
4585 6152 2.708325 GGAGTGGGGATAGCATTTCTCT 59.292 50.000 0.00 0.00 0.00 3.10
4586 6153 2.548920 CGGAGTGGGGATAGCATTTCTC 60.549 54.545 0.00 0.00 0.00 2.87
4587 6154 1.417890 CGGAGTGGGGATAGCATTTCT 59.582 52.381 0.00 0.00 0.00 2.52
4588 6155 1.416401 TCGGAGTGGGGATAGCATTTC 59.584 52.381 0.00 0.00 0.00 2.17
4589 6156 1.141053 GTCGGAGTGGGGATAGCATTT 59.859 52.381 0.00 0.00 0.00 2.32
4590 6157 0.759346 GTCGGAGTGGGGATAGCATT 59.241 55.000 0.00 0.00 0.00 3.56
4591 6158 1.122019 GGTCGGAGTGGGGATAGCAT 61.122 60.000 0.00 0.00 0.00 3.79
4592 6159 1.760875 GGTCGGAGTGGGGATAGCA 60.761 63.158 0.00 0.00 0.00 3.49
4593 6160 1.335132 TTGGTCGGAGTGGGGATAGC 61.335 60.000 0.00 0.00 0.00 2.97
4594 6161 0.753262 CTTGGTCGGAGTGGGGATAG 59.247 60.000 0.00 0.00 0.00 2.08
4595 6162 0.337082 TCTTGGTCGGAGTGGGGATA 59.663 55.000 0.00 0.00 0.00 2.59
4596 6163 0.326618 ATCTTGGTCGGAGTGGGGAT 60.327 55.000 0.00 0.00 0.00 3.85
4597 6164 0.337082 TATCTTGGTCGGAGTGGGGA 59.663 55.000 0.00 0.00 0.00 4.81
4598 6165 0.753262 CTATCTTGGTCGGAGTGGGG 59.247 60.000 0.00 0.00 0.00 4.96
4599 6166 1.776662 TCTATCTTGGTCGGAGTGGG 58.223 55.000 0.00 0.00 0.00 4.61
4600 6167 2.761208 AGTTCTATCTTGGTCGGAGTGG 59.239 50.000 0.00 0.00 0.00 4.00
4601 6168 4.457834 AAGTTCTATCTTGGTCGGAGTG 57.542 45.455 0.00 0.00 0.00 3.51
4602 6169 5.485209 AAAAGTTCTATCTTGGTCGGAGT 57.515 39.130 0.00 0.00 0.00 3.85
4603 6170 5.811100 GGTAAAAGTTCTATCTTGGTCGGAG 59.189 44.000 0.00 0.00 0.00 4.63
4604 6171 5.246656 TGGTAAAAGTTCTATCTTGGTCGGA 59.753 40.000 0.00 0.00 0.00 4.55
4605 6172 5.484715 TGGTAAAAGTTCTATCTTGGTCGG 58.515 41.667 0.00 0.00 0.00 4.79
4606 6173 7.429636 TTTGGTAAAAGTTCTATCTTGGTCG 57.570 36.000 0.00 0.00 0.00 4.79
5052 9121 7.941919 TCAAGCATTCTATACGTCATTAGTCT 58.058 34.615 0.00 0.00 0.00 3.24
5093 9162 4.884961 AGGATGAGAACCCACTATGTAGT 58.115 43.478 0.00 0.00 36.90 2.73
5539 9609 3.243336 AGCAGCTACTTTCGAAGTAACG 58.757 45.455 0.00 0.00 42.99 3.18
5565 9635 2.866028 GCGTGGCTGAAGCTGAAG 59.134 61.111 1.74 0.00 41.70 3.02
5566 9636 2.987282 TTCGCGTGGCTGAAGCTGAA 62.987 55.000 5.77 0.00 41.70 3.02
5567 9637 2.786539 ATTCGCGTGGCTGAAGCTGA 62.787 55.000 5.77 0.00 41.70 4.26
5568 9638 1.915614 AATTCGCGTGGCTGAAGCTG 61.916 55.000 5.77 0.00 41.70 4.24
5569 9639 1.639298 GAATTCGCGTGGCTGAAGCT 61.639 55.000 5.77 0.00 41.70 3.74
5570 9640 1.226128 GAATTCGCGTGGCTGAAGC 60.226 57.895 5.77 0.00 41.14 3.86
5651 9721 5.541484 GGAGATTCCCCAAAATCATGCTAAT 59.459 40.000 0.00 0.00 37.98 1.73
5719 9789 4.228210 ACATATCCGATTTGCCCTATGGAT 59.772 41.667 0.00 0.00 39.44 3.41
5769 9839 7.712204 ATCATGCTTGCATATCCATCATTTA 57.288 32.000 7.84 0.00 0.00 1.40
6385 10746 2.224314 TCTGATGATCGAGTCGATTCCG 59.776 50.000 27.65 18.04 47.00 4.30
6426 10787 2.040813 AGAATGTGCATGGTCTGGTTCT 59.959 45.455 0.00 0.00 0.00 3.01
6864 11225 2.731976 GAGATTTTGAGTCTCGCGTGTT 59.268 45.455 5.77 0.00 33.48 3.32
6896 11257 0.966920 GAGGACTCAAACCTCCACGA 59.033 55.000 0.00 0.00 45.64 4.35
7080 11441 5.428783 TCTCCTTCGAGGGATTTTTAGGATT 59.571 40.000 17.64 0.00 35.59 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.