Multiple sequence alignment - TraesCS1D01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G178100 chr1D 100.000 2453 0 0 1 2453 253181464 253183916 0.000000e+00 4530.0
1 TraesCS1D01G178100 chr1D 96.661 569 19 0 79 647 253081023 253081591 0.000000e+00 946.0
2 TraesCS1D01G178100 chr1D 97.059 34 1 0 1977 2010 433250143 433250110 9.470000e-05 58.4
3 TraesCS1D01G178100 chr1B 92.060 1058 50 17 648 1686 359227578 359226536 0.000000e+00 1458.0
4 TraesCS1D01G178100 chr1A 91.870 984 41 7 648 1623 324971077 324972029 0.000000e+00 1338.0
5 TraesCS1D01G178100 chr1A 97.959 392 7 1 2032 2422 560264385 560264776 0.000000e+00 678.0
6 TraesCS1D01G178100 chr1A 97.201 393 9 2 2029 2419 58173391 58172999 0.000000e+00 664.0
7 TraesCS1D01G178100 chr1A 90.840 131 8 3 1629 1755 324972115 324972245 3.240000e-39 172.0
8 TraesCS1D01G178100 chr1A 96.000 100 4 0 1865 1964 324972431 324972530 1.950000e-36 163.0
9 TraesCS1D01G178100 chr1A 97.368 38 1 0 2416 2453 349611134 349611097 5.660000e-07 65.8
10 TraesCS1D01G178100 chr2D 97.519 403 8 2 2028 2428 112095331 112095733 0.000000e+00 688.0
11 TraesCS1D01G178100 chr2D 97.222 396 9 2 2029 2422 493880232 493879837 0.000000e+00 669.0
12 TraesCS1D01G178100 chr2D 86.747 83 10 1 650 732 124812681 124812762 9.340000e-15 91.6
13 TraesCS1D01G178100 chr7D 97.704 392 8 1 2032 2422 546779069 546778678 0.000000e+00 673.0
14 TraesCS1D01G178100 chr7D 97.201 393 9 2 2029 2419 3378218 3378610 0.000000e+00 664.0
15 TraesCS1D01G178100 chr7D 94.595 37 2 0 1973 2009 31385706 31385742 9.470000e-05 58.4
16 TraesCS1D01G178100 chr7D 96.970 33 1 0 1977 2009 47118628 47118596 3.410000e-04 56.5
17 TraesCS1D01G178100 chr6D 98.187 386 6 1 2032 2416 104765607 104765992 0.000000e+00 673.0
18 TraesCS1D01G178100 chr6D 97.436 390 7 3 2029 2416 82645204 82645592 0.000000e+00 662.0
19 TraesCS1D01G178100 chr5D 97.208 394 7 4 2029 2419 109044649 109044257 0.000000e+00 664.0
20 TraesCS1D01G178100 chr5D 94.595 37 2 0 1973 2009 446307682 446307718 9.470000e-05 58.4
21 TraesCS1D01G178100 chr3A 81.735 657 82 30 4 647 191865115 191864484 4.680000e-142 514.0
22 TraesCS1D01G178100 chr3A 91.369 336 18 8 312 647 191881800 191881476 1.340000e-122 449.0
23 TraesCS1D01G178100 chr3A 86.885 244 22 5 407 645 638841481 638841243 5.200000e-67 265.0
24 TraesCS1D01G178100 chr6A 91.758 364 18 8 1 354 617584942 617584581 1.690000e-136 496.0
25 TraesCS1D01G178100 chr2A 91.460 363 20 7 1 354 757866344 757865984 2.840000e-134 488.0
26 TraesCS1D01G178100 chr2A 100.000 38 0 0 2416 2453 753744085 753744122 1.220000e-08 71.3
27 TraesCS1D01G178100 chr2A 97.059 34 1 0 1977 2010 20236282 20236315 9.470000e-05 58.4
28 TraesCS1D01G178100 chr2A 97.059 34 1 0 1977 2010 715223019 715223052 9.470000e-05 58.4
29 TraesCS1D01G178100 chr4B 91.185 363 20 8 1 354 67824709 67825068 1.320000e-132 483.0
30 TraesCS1D01G178100 chr4B 92.453 53 4 0 2401 2453 649126163 649126111 2.620000e-10 76.8
31 TraesCS1D01G178100 chr7B 91.036 357 29 3 1 356 112007969 112008323 1.710000e-131 479.0
32 TraesCS1D01G178100 chr7B 91.036 357 29 3 1 356 468052797 468052443 1.710000e-131 479.0
33 TraesCS1D01G178100 chr7B 91.036 357 28 4 1 356 707743419 707743772 1.710000e-131 479.0
34 TraesCS1D01G178100 chr3B 90.909 363 22 9 1 354 6331861 6332221 6.140000e-131 477.0
35 TraesCS1D01G178100 chr2B 90.884 362 23 7 1 354 776771729 776772088 6.140000e-131 477.0
36 TraesCS1D01G178100 chr2B 88.608 79 9 0 654 732 48006358 48006436 2.010000e-16 97.1
37 TraesCS1D01G178100 chr2B 84.848 99 12 3 551 647 236463953 236464050 2.010000e-16 97.1
38 TraesCS1D01G178100 chr5A 89.053 338 32 4 312 647 698735786 698736120 4.880000e-112 414.0
39 TraesCS1D01G178100 chr5A 88.496 339 33 5 312 647 698749738 698750073 2.940000e-109 405.0
40 TraesCS1D01G178100 chr5A 100.000 38 0 0 2416 2453 485532222 485532185 1.220000e-08 71.3
41 TraesCS1D01G178100 chr7A 100.000 38 0 0 2416 2453 632615838 632615801 1.220000e-08 71.3
42 TraesCS1D01G178100 chr7A 100.000 38 0 0 2416 2453 632632718 632632681 1.220000e-08 71.3
43 TraesCS1D01G178100 chr7A 100.000 38 0 0 2416 2453 632641405 632641368 1.220000e-08 71.3
44 TraesCS1D01G178100 chr7A 100.000 38 0 0 2416 2453 632650449 632650412 1.220000e-08 71.3
45 TraesCS1D01G178100 chr7A 100.000 38 0 0 2416 2453 632667513 632667476 1.220000e-08 71.3
46 TraesCS1D01G178100 chr6B 84.615 65 7 2 589 650 38079688 38079624 7.320000e-06 62.1
47 TraesCS1D01G178100 chr6B 94.595 37 2 0 1973 2009 37261711 37261675 9.470000e-05 58.4
48 TraesCS1D01G178100 chr5B 85.714 63 4 4 589 647 258440809 258440748 7.320000e-06 62.1
49 TraesCS1D01G178100 chr3D 94.737 38 2 0 1972 2009 351357509 351357472 2.630000e-05 60.2
50 TraesCS1D01G178100 chr4D 94.595 37 2 0 1973 2009 353493672 353493708 9.470000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G178100 chr1D 253181464 253183916 2452 False 4530.000000 4530 100.000000 1 2453 1 chr1D.!!$F2 2452
1 TraesCS1D01G178100 chr1D 253081023 253081591 568 False 946.000000 946 96.661000 79 647 1 chr1D.!!$F1 568
2 TraesCS1D01G178100 chr1B 359226536 359227578 1042 True 1458.000000 1458 92.060000 648 1686 1 chr1B.!!$R1 1038
3 TraesCS1D01G178100 chr1A 324971077 324972530 1453 False 557.666667 1338 92.903333 648 1964 3 chr1A.!!$F2 1316
4 TraesCS1D01G178100 chr3A 191864484 191865115 631 True 514.000000 514 81.735000 4 647 1 chr3A.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 415 0.954452 CCCCAACAAGCTTCACACTC 59.046 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2482 0.035439 AATGACCACGTTGCCCCTAG 60.035 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 6.879400 AACTGATCTCAGGTTGTTATAGACC 58.121 40.000 11.66 0.00 42.10 3.85
222 226 4.351111 GCCCCTCATATAAAAGGAAGAGGA 59.649 45.833 7.80 0.00 44.12 3.71
278 282 2.745821 GGTTAAAACCCCGAGTGCTAAG 59.254 50.000 0.02 0.00 43.43 2.18
296 300 5.421056 TGCTAAGAACCGATCCTAAAAGAGA 59.579 40.000 0.00 0.00 0.00 3.10
328 332 1.246056 TGGAAGACCGTCTACCACCG 61.246 60.000 0.26 0.00 39.42 4.94
411 415 0.954452 CCCCAACAAGCTTCACACTC 59.046 55.000 0.00 0.00 0.00 3.51
441 445 4.719106 GGCAGCTGCACAGAGCCT 62.719 66.667 37.63 0.05 43.40 4.58
524 528 2.697147 GAAGGACCCAAGGTGCAGCA 62.697 60.000 19.63 0.00 46.69 4.41
526 530 1.607467 GGACCCAAGGTGCAGCAAT 60.607 57.895 19.63 3.25 43.66 3.56
540 545 5.765182 GGTGCAGCAATTGGACTACTAATAT 59.235 40.000 11.86 0.00 46.36 1.28
861 868 2.742589 GGATCTGTTTCAAACTCGGGTC 59.257 50.000 1.10 0.00 0.00 4.46
874 881 2.635915 ACTCGGGTCAACATTAACTCCA 59.364 45.455 0.00 0.00 0.00 3.86
944 951 4.466370 TGCTATAACTAGTTGTCTGCCACT 59.534 41.667 18.56 0.00 0.00 4.00
952 959 4.623932 AGTTGTCTGCCACTCTTTGATA 57.376 40.909 0.00 0.00 0.00 2.15
1044 1054 3.086600 GTGGCCCTCCTCCTCCTG 61.087 72.222 0.00 0.00 0.00 3.86
1107 1117 1.524393 TAGCGTCGACGGATGGCTA 60.524 57.895 36.13 25.02 40.23 3.93
1108 1118 1.096967 TAGCGTCGACGGATGGCTAA 61.097 55.000 36.13 12.23 40.23 3.09
1443 1463 2.954753 GCTGCCGTTGGACGTCAAG 61.955 63.158 18.91 4.91 40.58 3.02
1446 1466 1.595929 GCCGTTGGACGTCAAGGAA 60.596 57.895 18.91 1.12 42.11 3.36
1495 1515 3.064545 GCTACGTATACATACCGGCCTAG 59.935 52.174 0.00 0.00 0.00 3.02
1542 1562 1.273048 TGGACATTACGTTACGTGCCT 59.727 47.619 21.22 1.73 41.39 4.75
1587 1611 9.310716 GTACGTATGAAGCTAATAAACCTCTTT 57.689 33.333 0.00 0.00 0.00 2.52
1627 1652 8.671028 ACTTACGGCATAAAACCAAGTAATTAG 58.329 33.333 0.00 0.00 0.00 1.73
1657 1762 6.196724 GTCTCTATATGTACGTTGCTGTTCAC 59.803 42.308 0.00 0.00 0.00 3.18
1663 1768 2.755836 ACGTTGCTGTTCACACAATC 57.244 45.000 0.00 0.00 30.36 2.67
1686 1791 3.678289 TGCACTCTCAGCATGTTACATT 58.322 40.909 0.00 0.00 37.02 2.71
1687 1792 3.437741 TGCACTCTCAGCATGTTACATTG 59.562 43.478 0.00 0.00 37.02 2.82
1688 1793 3.438087 GCACTCTCAGCATGTTACATTGT 59.562 43.478 0.00 0.00 37.40 2.71
1689 1794 4.631377 GCACTCTCAGCATGTTACATTGTA 59.369 41.667 0.00 0.00 37.40 2.41
1690 1795 5.446473 GCACTCTCAGCATGTTACATTGTAC 60.446 44.000 0.00 0.00 37.40 2.90
1692 1797 6.314648 CACTCTCAGCATGTTACATTGTACAT 59.685 38.462 0.00 1.73 37.40 2.29
1742 1851 5.643777 GGTGTCAGATATGTTAAGTGCTGTT 59.356 40.000 0.00 0.00 0.00 3.16
1755 1864 2.621055 AGTGCTGTTTGCGGTTATTCAA 59.379 40.909 0.00 0.00 46.63 2.69
1756 1865 3.255642 AGTGCTGTTTGCGGTTATTCAAT 59.744 39.130 0.00 0.00 46.63 2.57
1757 1866 3.987220 GTGCTGTTTGCGGTTATTCAATT 59.013 39.130 0.00 0.00 46.63 2.32
1758 1867 4.447389 GTGCTGTTTGCGGTTATTCAATTT 59.553 37.500 0.00 0.00 46.63 1.82
1759 1868 5.050431 GTGCTGTTTGCGGTTATTCAATTTT 60.050 36.000 0.00 0.00 46.63 1.82
1760 1869 5.525378 TGCTGTTTGCGGTTATTCAATTTTT 59.475 32.000 0.00 0.00 46.63 1.94
1788 1897 5.551305 TGAGGATCACGGTTATTCATCAT 57.449 39.130 0.00 0.00 42.56 2.45
1789 1898 5.928976 TGAGGATCACGGTTATTCATCATT 58.071 37.500 0.00 0.00 42.56 2.57
1799 1908 5.111293 GGTTATTCATCATTTGTTGGCAGG 58.889 41.667 0.00 0.00 0.00 4.85
1800 1909 2.747396 TTCATCATTTGTTGGCAGGC 57.253 45.000 0.00 0.00 0.00 4.85
1828 1937 2.036992 TCATTTTGCCGAACCATTTGCT 59.963 40.909 0.00 0.00 0.00 3.91
1836 1945 2.351738 CCGAACCATTTGCTCCTTGTTC 60.352 50.000 0.00 0.00 0.00 3.18
1837 1946 2.351738 CGAACCATTTGCTCCTTGTTCC 60.352 50.000 0.00 0.00 30.88 3.62
1863 1975 2.872858 AGAAAAGAACCGTCTGCTCAAC 59.127 45.455 0.00 0.00 33.05 3.18
1934 2150 1.539869 ACCTGGCCCACTGACATCT 60.540 57.895 0.00 0.00 0.00 2.90
1942 2158 1.182667 CCACTGACATCTGGGACGTA 58.817 55.000 0.00 0.00 0.00 3.57
1982 2198 4.460683 GGCGTGCCACGTCCCATA 62.461 66.667 19.57 0.00 40.90 2.74
1983 2199 2.203015 GCGTGCCACGTCCCATAT 60.203 61.111 19.57 0.00 44.73 1.78
1984 2200 1.068417 GCGTGCCACGTCCCATATA 59.932 57.895 19.57 0.00 44.73 0.86
1985 2201 1.219522 GCGTGCCACGTCCCATATAC 61.220 60.000 19.57 0.00 44.73 1.47
1986 2202 0.103390 CGTGCCACGTCCCATATACA 59.897 55.000 9.53 0.00 36.74 2.29
1987 2203 1.270094 CGTGCCACGTCCCATATACAT 60.270 52.381 9.53 0.00 36.74 2.29
1988 2204 2.029739 CGTGCCACGTCCCATATACATA 60.030 50.000 9.53 0.00 36.74 2.29
1989 2205 3.553302 CGTGCCACGTCCCATATACATAA 60.553 47.826 9.53 0.00 36.74 1.90
1990 2206 3.994392 GTGCCACGTCCCATATACATAAG 59.006 47.826 0.00 0.00 0.00 1.73
1991 2207 3.898741 TGCCACGTCCCATATACATAAGA 59.101 43.478 0.00 0.00 0.00 2.10
1992 2208 4.345547 TGCCACGTCCCATATACATAAGAA 59.654 41.667 0.00 0.00 0.00 2.52
1993 2209 4.929808 GCCACGTCCCATATACATAAGAAG 59.070 45.833 0.00 0.00 0.00 2.85
1994 2210 5.510861 GCCACGTCCCATATACATAAGAAGT 60.511 44.000 0.00 0.00 0.00 3.01
1995 2211 6.522054 CCACGTCCCATATACATAAGAAGTT 58.478 40.000 0.00 0.00 0.00 2.66
1996 2212 6.423905 CCACGTCCCATATACATAAGAAGTTG 59.576 42.308 0.00 0.00 0.00 3.16
1997 2213 7.207383 CACGTCCCATATACATAAGAAGTTGA 58.793 38.462 0.00 0.00 0.00 3.18
1998 2214 7.872993 CACGTCCCATATACATAAGAAGTTGAT 59.127 37.037 0.00 0.00 0.00 2.57
1999 2215 8.088981 ACGTCCCATATACATAAGAAGTTGATC 58.911 37.037 0.00 0.00 0.00 2.92
2000 2216 7.545965 CGTCCCATATACATAAGAAGTTGATCC 59.454 40.741 0.00 0.00 0.00 3.36
2001 2217 7.824779 GTCCCATATACATAAGAAGTTGATCCC 59.175 40.741 0.00 0.00 0.00 3.85
2002 2218 7.037586 TCCCATATACATAAGAAGTTGATCCCC 60.038 40.741 0.00 0.00 0.00 4.81
2003 2219 7.257016 CCCATATACATAAGAAGTTGATCCCCA 60.257 40.741 0.00 0.00 0.00 4.96
2004 2220 7.607991 CCATATACATAAGAAGTTGATCCCCAC 59.392 40.741 0.00 0.00 0.00 4.61
2005 2221 6.831664 ATACATAAGAAGTTGATCCCCACT 57.168 37.500 0.00 0.00 0.00 4.00
2006 2222 7.931015 ATACATAAGAAGTTGATCCCCACTA 57.069 36.000 0.00 0.00 0.00 2.74
2007 2223 6.831664 ACATAAGAAGTTGATCCCCACTAT 57.168 37.500 0.00 0.00 0.00 2.12
2008 2224 6.831976 ACATAAGAAGTTGATCCCCACTATC 58.168 40.000 0.00 0.00 0.00 2.08
2009 2225 6.386927 ACATAAGAAGTTGATCCCCACTATCA 59.613 38.462 0.00 0.00 0.00 2.15
2010 2226 5.365021 AAGAAGTTGATCCCCACTATCAG 57.635 43.478 0.00 0.00 34.93 2.90
2011 2227 3.713764 AGAAGTTGATCCCCACTATCAGG 59.286 47.826 0.00 0.00 34.93 3.86
2012 2228 2.412591 AGTTGATCCCCACTATCAGGG 58.587 52.381 0.00 0.00 46.36 4.45
2013 2229 2.127708 GTTGATCCCCACTATCAGGGT 58.872 52.381 0.00 0.00 45.28 4.34
2014 2230 2.103153 TGATCCCCACTATCAGGGTC 57.897 55.000 0.00 0.00 45.28 4.46
2015 2231 1.580658 TGATCCCCACTATCAGGGTCT 59.419 52.381 0.00 0.00 45.28 3.85
2016 2232 1.974236 GATCCCCACTATCAGGGTCTG 59.026 57.143 0.00 0.00 45.28 3.51
2017 2233 0.716591 TCCCCACTATCAGGGTCTGT 59.283 55.000 0.00 0.00 45.28 3.41
2018 2234 1.080498 TCCCCACTATCAGGGTCTGTT 59.920 52.381 0.00 0.00 45.28 3.16
2019 2235 1.916181 CCCCACTATCAGGGTCTGTTT 59.084 52.381 0.00 0.00 45.28 2.83
2020 2236 2.356125 CCCCACTATCAGGGTCTGTTTG 60.356 54.545 0.00 0.00 45.28 2.93
2021 2237 2.356125 CCCACTATCAGGGTCTGTTTGG 60.356 54.545 0.00 0.00 41.61 3.28
2022 2238 2.305927 CCACTATCAGGGTCTGTTTGGT 59.694 50.000 0.00 0.00 32.61 3.67
2023 2239 3.244911 CCACTATCAGGGTCTGTTTGGTT 60.245 47.826 0.00 0.00 32.61 3.67
2024 2240 4.398319 CACTATCAGGGTCTGTTTGGTTT 58.602 43.478 0.00 0.00 32.61 3.27
2025 2241 4.455877 CACTATCAGGGTCTGTTTGGTTTC 59.544 45.833 0.00 0.00 32.61 2.78
2026 2242 3.593442 ATCAGGGTCTGTTTGGTTTCA 57.407 42.857 0.00 0.00 32.61 2.69
2027 2243 3.374042 TCAGGGTCTGTTTGGTTTCAA 57.626 42.857 0.00 0.00 32.61 2.69
2028 2244 3.909732 TCAGGGTCTGTTTGGTTTCAAT 58.090 40.909 0.00 0.00 32.61 2.57
2029 2245 5.055265 TCAGGGTCTGTTTGGTTTCAATA 57.945 39.130 0.00 0.00 32.61 1.90
2030 2246 5.450453 TCAGGGTCTGTTTGGTTTCAATAA 58.550 37.500 0.00 0.00 32.61 1.40
2031 2247 5.534654 TCAGGGTCTGTTTGGTTTCAATAAG 59.465 40.000 0.00 0.00 32.61 1.73
2032 2248 4.832823 AGGGTCTGTTTGGTTTCAATAAGG 59.167 41.667 0.00 0.00 32.28 2.69
2033 2249 4.021456 GGGTCTGTTTGGTTTCAATAAGGG 60.021 45.833 0.00 0.00 32.28 3.95
2034 2250 4.021456 GGTCTGTTTGGTTTCAATAAGGGG 60.021 45.833 0.00 0.00 32.28 4.79
2035 2251 4.587262 GTCTGTTTGGTTTCAATAAGGGGT 59.413 41.667 0.00 0.00 32.28 4.95
2036 2252 4.586841 TCTGTTTGGTTTCAATAAGGGGTG 59.413 41.667 0.00 0.00 32.28 4.61
2037 2253 4.290942 TGTTTGGTTTCAATAAGGGGTGT 58.709 39.130 0.00 0.00 32.28 4.16
2038 2254 4.717280 TGTTTGGTTTCAATAAGGGGTGTT 59.283 37.500 0.00 0.00 32.28 3.32
2039 2255 5.189934 TGTTTGGTTTCAATAAGGGGTGTTT 59.810 36.000 0.00 0.00 32.28 2.83
2040 2256 4.946478 TGGTTTCAATAAGGGGTGTTTG 57.054 40.909 0.00 0.00 0.00 2.93
2041 2257 4.290942 TGGTTTCAATAAGGGGTGTTTGT 58.709 39.130 0.00 0.00 0.00 2.83
2042 2258 4.717280 TGGTTTCAATAAGGGGTGTTTGTT 59.283 37.500 0.00 0.00 0.00 2.83
2043 2259 5.189934 TGGTTTCAATAAGGGGTGTTTGTTT 59.810 36.000 0.00 0.00 0.00 2.83
2044 2260 5.756347 GGTTTCAATAAGGGGTGTTTGTTTC 59.244 40.000 0.00 0.00 0.00 2.78
2045 2261 5.538849 TTCAATAAGGGGTGTTTGTTTCC 57.461 39.130 0.00 0.00 0.00 3.13
2046 2262 4.547671 TCAATAAGGGGTGTTTGTTTCCA 58.452 39.130 0.00 0.00 0.00 3.53
2047 2263 4.586841 TCAATAAGGGGTGTTTGTTTCCAG 59.413 41.667 0.00 0.00 0.00 3.86
2048 2264 1.788229 AAGGGGTGTTTGTTTCCAGG 58.212 50.000 0.00 0.00 0.00 4.45
2049 2265 0.105709 AGGGGTGTTTGTTTCCAGGG 60.106 55.000 0.00 0.00 0.00 4.45
2050 2266 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
2051 2267 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
2052 2268 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
2053 2269 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
2054 2270 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
2055 2271 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
2056 2272 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
2078 2294 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
2089 2305 7.706100 GACTAGAAAAAGTCCCTCTTAGAGA 57.294 40.000 11.32 0.00 40.06 3.10
2090 2306 7.470935 ACTAGAAAAAGTCCCTCTTAGAGAC 57.529 40.000 11.32 2.08 35.02 3.36
2091 2307 7.243091 ACTAGAAAAAGTCCCTCTTAGAGACT 58.757 38.462 11.32 4.57 42.58 3.24
2112 2328 3.529216 TTTTTACCAAACGGGAGGGAT 57.471 42.857 0.00 0.00 41.15 3.85
2113 2329 3.529216 TTTTACCAAACGGGAGGGATT 57.471 42.857 0.00 0.00 41.15 3.01
2114 2330 3.529216 TTTACCAAACGGGAGGGATTT 57.471 42.857 0.00 0.00 41.15 2.17
2115 2331 3.529216 TTACCAAACGGGAGGGATTTT 57.471 42.857 0.00 0.00 41.15 1.82
2116 2332 2.391926 ACCAAACGGGAGGGATTTTT 57.608 45.000 0.00 0.00 41.15 1.94
2117 2333 3.529216 ACCAAACGGGAGGGATTTTTA 57.471 42.857 0.00 0.00 41.15 1.52
2118 2334 3.427573 ACCAAACGGGAGGGATTTTTAG 58.572 45.455 0.00 0.00 41.15 1.85
2119 2335 2.758423 CCAAACGGGAGGGATTTTTAGG 59.242 50.000 0.00 0.00 40.01 2.69
2120 2336 2.758423 CAAACGGGAGGGATTTTTAGGG 59.242 50.000 0.00 0.00 0.00 3.53
2121 2337 1.975471 ACGGGAGGGATTTTTAGGGA 58.025 50.000 0.00 0.00 0.00 4.20
2122 2338 1.562942 ACGGGAGGGATTTTTAGGGAC 59.437 52.381 0.00 0.00 0.00 4.46
2123 2339 1.844497 CGGGAGGGATTTTTAGGGACT 59.156 52.381 0.00 0.00 46.37 3.85
2124 2340 3.043418 CGGGAGGGATTTTTAGGGACTA 58.957 50.000 0.00 0.00 41.75 2.59
2138 2354 4.236527 AGGGACTAAACTAGGCATTTGG 57.763 45.455 0.00 0.00 36.02 3.28
2139 2355 3.053619 AGGGACTAAACTAGGCATTTGGG 60.054 47.826 0.00 0.00 36.02 4.12
2140 2356 3.053917 GGGACTAAACTAGGCATTTGGGA 60.054 47.826 0.00 0.00 34.70 4.37
2141 2357 3.945921 GGACTAAACTAGGCATTTGGGAC 59.054 47.826 0.00 0.00 34.70 4.46
2142 2358 4.324331 GGACTAAACTAGGCATTTGGGACT 60.324 45.833 0.00 0.00 34.70 3.85
2143 2359 5.104652 GGACTAAACTAGGCATTTGGGACTA 60.105 44.000 0.00 0.00 34.70 2.59
2144 2360 6.382919 ACTAAACTAGGCATTTGGGACTAA 57.617 37.500 0.00 0.00 0.00 2.24
2145 2361 6.786122 ACTAAACTAGGCATTTGGGACTAAA 58.214 36.000 0.00 0.00 0.00 1.85
2146 2362 7.410991 ACTAAACTAGGCATTTGGGACTAAAT 58.589 34.615 0.00 0.00 0.00 1.40
2147 2363 6.530019 AAACTAGGCATTTGGGACTAAATG 57.470 37.500 14.45 14.45 46.03 2.32
2148 2364 5.450818 ACTAGGCATTTGGGACTAAATGA 57.549 39.130 20.68 3.88 46.13 2.57
2149 2365 5.826643 ACTAGGCATTTGGGACTAAATGAA 58.173 37.500 20.68 7.74 46.13 2.57
2150 2366 5.888161 ACTAGGCATTTGGGACTAAATGAAG 59.112 40.000 20.68 16.00 46.13 3.02
2151 2367 4.934356 AGGCATTTGGGACTAAATGAAGA 58.066 39.130 20.68 0.00 46.13 2.87
2152 2368 5.332743 AGGCATTTGGGACTAAATGAAGAA 58.667 37.500 20.68 0.00 46.13 2.52
2153 2369 5.420104 AGGCATTTGGGACTAAATGAAGAAG 59.580 40.000 20.68 0.00 46.13 2.85
2154 2370 5.418840 GGCATTTGGGACTAAATGAAGAAGA 59.581 40.000 20.68 0.00 46.13 2.87
2155 2371 6.325596 GCATTTGGGACTAAATGAAGAAGAC 58.674 40.000 20.68 2.40 46.13 3.01
2156 2372 6.151817 GCATTTGGGACTAAATGAAGAAGACT 59.848 38.462 20.68 0.00 46.13 3.24
2157 2373 7.627300 GCATTTGGGACTAAATGAAGAAGACTC 60.627 40.741 20.68 1.26 46.13 3.36
2158 2374 6.688073 TTGGGACTAAATGAAGAAGACTCT 57.312 37.500 0.00 0.00 0.00 3.24
2159 2375 6.287589 TGGGACTAAATGAAGAAGACTCTC 57.712 41.667 0.00 0.00 0.00 3.20
2160 2376 5.780282 TGGGACTAAATGAAGAAGACTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
2161 2377 6.270000 TGGGACTAAATGAAGAAGACTCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
2162 2378 6.816140 GGGACTAAATGAAGAAGACTCTCAAG 59.184 42.308 0.00 0.00 0.00 3.02
2163 2379 7.310113 GGGACTAAATGAAGAAGACTCTCAAGA 60.310 40.741 0.00 0.00 0.00 3.02
2164 2380 8.091449 GGACTAAATGAAGAAGACTCTCAAGAA 58.909 37.037 0.00 0.00 0.00 2.52
2165 2381 9.139174 GACTAAATGAAGAAGACTCTCAAGAAG 57.861 37.037 0.00 0.00 0.00 2.85
2166 2382 8.865090 ACTAAATGAAGAAGACTCTCAAGAAGA 58.135 33.333 0.00 0.00 0.00 2.87
2191 2407 6.850752 TCTTTTTGAGACTTTTTGGGACTT 57.149 33.333 0.00 0.00 0.00 3.01
2192 2408 7.239763 TCTTTTTGAGACTTTTTGGGACTTT 57.760 32.000 0.00 0.00 0.00 2.66
2193 2409 7.676004 TCTTTTTGAGACTTTTTGGGACTTTT 58.324 30.769 0.00 0.00 0.00 2.27
2194 2410 7.817478 TCTTTTTGAGACTTTTTGGGACTTTTC 59.183 33.333 0.00 0.00 0.00 2.29
2195 2411 5.592104 TTGAGACTTTTTGGGACTTTTCC 57.408 39.130 0.00 0.00 41.95 3.13
2196 2412 4.605183 TGAGACTTTTTGGGACTTTTCCA 58.395 39.130 0.00 0.00 44.98 3.53
2197 2413 5.020132 TGAGACTTTTTGGGACTTTTCCAA 58.980 37.500 0.00 0.00 44.98 3.53
2198 2414 5.660864 TGAGACTTTTTGGGACTTTTCCAAT 59.339 36.000 0.00 0.00 44.98 3.16
2199 2415 6.836527 TGAGACTTTTTGGGACTTTTCCAATA 59.163 34.615 0.00 0.00 44.98 1.90
2200 2416 7.343316 TGAGACTTTTTGGGACTTTTCCAATAA 59.657 33.333 0.00 0.00 44.98 1.40
2201 2417 8.262601 AGACTTTTTGGGACTTTTCCAATAAT 57.737 30.769 0.00 0.00 44.98 1.28
2202 2418 8.150296 AGACTTTTTGGGACTTTTCCAATAATG 58.850 33.333 0.00 0.00 44.98 1.90
2203 2419 6.710295 ACTTTTTGGGACTTTTCCAATAATGC 59.290 34.615 0.00 0.00 44.98 3.56
2204 2420 4.817318 TTGGGACTTTTCCAATAATGCC 57.183 40.909 0.00 0.00 44.98 4.40
2205 2421 3.103742 TGGGACTTTTCCAATAATGCCC 58.896 45.455 0.00 0.00 44.98 5.36
2206 2422 2.434336 GGGACTTTTCCAATAATGCCCC 59.566 50.000 0.00 0.00 44.98 5.80
2207 2423 3.374764 GGACTTTTCCAATAATGCCCCT 58.625 45.455 0.00 0.00 42.30 4.79
2208 2424 3.384789 GGACTTTTCCAATAATGCCCCTC 59.615 47.826 0.00 0.00 42.30 4.30
2209 2425 3.374764 ACTTTTCCAATAATGCCCCTCC 58.625 45.455 0.00 0.00 0.00 4.30
2210 2426 3.245948 ACTTTTCCAATAATGCCCCTCCA 60.246 43.478 0.00 0.00 0.00 3.86
2211 2427 3.704545 TTTCCAATAATGCCCCTCCAT 57.295 42.857 0.00 0.00 0.00 3.41
2212 2428 2.681319 TCCAATAATGCCCCTCCATG 57.319 50.000 0.00 0.00 0.00 3.66
2213 2429 0.971386 CCAATAATGCCCCTCCATGC 59.029 55.000 0.00 0.00 0.00 4.06
2214 2430 1.707106 CAATAATGCCCCTCCATGCA 58.293 50.000 0.00 0.00 42.52 3.96
2215 2431 1.342174 CAATAATGCCCCTCCATGCAC 59.658 52.381 0.00 0.00 40.88 4.57
2216 2432 0.178953 ATAATGCCCCTCCATGCACC 60.179 55.000 0.00 0.00 40.88 5.01
2217 2433 2.296945 TAATGCCCCTCCATGCACCC 62.297 60.000 0.00 0.00 40.88 4.61
2219 2435 4.147587 GCCCCTCCATGCACCCAT 62.148 66.667 0.00 0.00 0.00 4.00
2220 2436 2.691732 CCCCTCCATGCACCCATT 59.308 61.111 0.00 0.00 0.00 3.16
2221 2437 1.759299 CCCCTCCATGCACCCATTG 60.759 63.158 0.00 0.00 0.00 2.82
2222 2438 1.759299 CCCTCCATGCACCCATTGG 60.759 63.158 0.00 0.00 37.80 3.16
2223 2439 2.428925 CCTCCATGCACCCATTGGC 61.429 63.158 0.00 0.00 33.59 4.52
2224 2440 2.364056 TCCATGCACCCATTGGCC 60.364 61.111 0.00 0.00 33.59 5.36
2225 2441 3.472726 CCATGCACCCATTGGCCC 61.473 66.667 0.00 0.00 33.59 5.80
2226 2442 3.840594 CATGCACCCATTGGCCCG 61.841 66.667 0.00 0.00 33.59 6.13
2247 2463 3.935371 ACCCCATGGTGTTGTTTGA 57.065 47.368 11.73 0.00 45.58 2.69
2248 2464 2.397044 ACCCCATGGTGTTGTTTGAT 57.603 45.000 11.73 0.00 45.58 2.57
2249 2465 2.688477 ACCCCATGGTGTTGTTTGATT 58.312 42.857 11.73 0.00 45.58 2.57
2250 2466 2.368221 ACCCCATGGTGTTGTTTGATTG 59.632 45.455 11.73 0.00 45.58 2.67
2251 2467 2.368221 CCCCATGGTGTTGTTTGATTGT 59.632 45.455 11.73 0.00 0.00 2.71
2252 2468 3.181456 CCCCATGGTGTTGTTTGATTGTT 60.181 43.478 11.73 0.00 0.00 2.83
2253 2469 4.039730 CCCCATGGTGTTGTTTGATTGTTA 59.960 41.667 11.73 0.00 0.00 2.41
2254 2470 5.279910 CCCCATGGTGTTGTTTGATTGTTAT 60.280 40.000 11.73 0.00 0.00 1.89
2255 2471 6.229733 CCCATGGTGTTGTTTGATTGTTATT 58.770 36.000 11.73 0.00 0.00 1.40
2256 2472 6.709846 CCCATGGTGTTGTTTGATTGTTATTT 59.290 34.615 11.73 0.00 0.00 1.40
2257 2473 7.228308 CCCATGGTGTTGTTTGATTGTTATTTT 59.772 33.333 11.73 0.00 0.00 1.82
2258 2474 8.619546 CCATGGTGTTGTTTGATTGTTATTTTT 58.380 29.630 2.57 0.00 0.00 1.94
2259 2475 9.649024 CATGGTGTTGTTTGATTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
2260 2476 9.612066 ATGGTGTTGTTTGATTGTTATTTTTCT 57.388 25.926 0.00 0.00 0.00 2.52
2277 2493 9.715121 TTATTTTTCTATATACTAGGGGCAACG 57.285 33.333 0.00 0.00 37.60 4.10
2278 2494 6.736110 TTTTCTATATACTAGGGGCAACGT 57.264 37.500 0.00 0.00 37.60 3.99
2279 2495 5.717078 TTCTATATACTAGGGGCAACGTG 57.283 43.478 0.00 0.00 37.60 4.49
2280 2496 4.084287 TCTATATACTAGGGGCAACGTGG 58.916 47.826 0.00 0.00 37.60 4.94
2281 2497 2.163810 TATACTAGGGGCAACGTGGT 57.836 50.000 0.00 0.00 37.60 4.16
2282 2498 0.828677 ATACTAGGGGCAACGTGGTC 59.171 55.000 0.00 0.00 37.60 4.02
2283 2499 0.542467 TACTAGGGGCAACGTGGTCA 60.542 55.000 0.00 0.00 37.60 4.02
2284 2500 1.198759 ACTAGGGGCAACGTGGTCAT 61.199 55.000 0.00 0.00 37.60 3.06
2285 2501 0.035439 CTAGGGGCAACGTGGTCATT 60.035 55.000 0.00 0.00 37.60 2.57
2286 2502 0.402504 TAGGGGCAACGTGGTCATTT 59.597 50.000 0.00 0.00 37.60 2.32
2287 2503 0.402504 AGGGGCAACGTGGTCATTTA 59.597 50.000 0.00 0.00 37.60 1.40
2288 2504 1.202952 AGGGGCAACGTGGTCATTTAA 60.203 47.619 0.00 0.00 37.60 1.52
2289 2505 1.822371 GGGGCAACGTGGTCATTTAAT 59.178 47.619 0.00 0.00 37.60 1.40
2290 2506 3.018149 GGGGCAACGTGGTCATTTAATA 58.982 45.455 0.00 0.00 37.60 0.98
2291 2507 3.444388 GGGGCAACGTGGTCATTTAATAA 59.556 43.478 0.00 0.00 37.60 1.40
2292 2508 4.417506 GGGCAACGTGGTCATTTAATAAC 58.582 43.478 0.00 0.00 37.60 1.89
2293 2509 4.417506 GGCAACGTGGTCATTTAATAACC 58.582 43.478 0.00 0.00 0.00 2.85
2294 2510 4.157105 GGCAACGTGGTCATTTAATAACCT 59.843 41.667 0.00 0.00 34.05 3.50
2295 2511 5.329493 GCAACGTGGTCATTTAATAACCTC 58.671 41.667 0.00 0.00 34.05 3.85
2296 2512 5.123344 GCAACGTGGTCATTTAATAACCTCT 59.877 40.000 0.00 0.00 34.05 3.69
2297 2513 6.314400 GCAACGTGGTCATTTAATAACCTCTA 59.686 38.462 0.00 0.00 34.05 2.43
2298 2514 7.465513 GCAACGTGGTCATTTAATAACCTCTAG 60.466 40.741 0.00 0.00 34.05 2.43
2299 2515 6.579865 ACGTGGTCATTTAATAACCTCTAGG 58.420 40.000 0.00 0.00 42.17 3.02
2300 2516 6.381994 ACGTGGTCATTTAATAACCTCTAGGA 59.618 38.462 2.23 0.00 38.94 2.94
2301 2517 7.093201 ACGTGGTCATTTAATAACCTCTAGGAA 60.093 37.037 2.23 0.00 38.94 3.36
2302 2518 7.438459 CGTGGTCATTTAATAACCTCTAGGAAG 59.562 40.741 2.23 0.00 38.94 3.46
2303 2519 7.715686 GTGGTCATTTAATAACCTCTAGGAAGG 59.284 40.741 2.23 0.00 42.55 3.46
2304 2520 7.147373 TGGTCATTTAATAACCTCTAGGAAGGG 60.147 40.741 2.23 0.00 41.04 3.95
2305 2521 7.072076 GGTCATTTAATAACCTCTAGGAAGGGA 59.928 40.741 2.23 0.00 41.04 4.20
2306 2522 7.932491 GTCATTTAATAACCTCTAGGAAGGGAC 59.068 40.741 2.23 0.00 41.04 4.46
2307 2523 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
2308 2524 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
2309 2525 8.779096 TTTAATAACCTCTAGGAAGGGACTAG 57.221 38.462 2.23 0.00 41.04 2.57
2310 2526 3.691698 AACCTCTAGGAAGGGACTAGG 57.308 52.381 2.23 0.00 41.04 3.02
2311 2527 1.860906 ACCTCTAGGAAGGGACTAGGG 59.139 57.143 2.23 0.00 41.04 3.53
2312 2528 2.145298 CCTCTAGGAAGGGACTAGGGA 58.855 57.143 1.08 0.00 40.69 4.20
2313 2529 2.158430 CCTCTAGGAAGGGACTAGGGAC 60.158 59.091 1.08 0.00 40.69 4.46
2314 2530 2.787035 CTCTAGGAAGGGACTAGGGACT 59.213 54.545 0.00 0.00 40.69 3.85
2315 2531 3.205733 CTCTAGGAAGGGACTAGGGACTT 59.794 52.174 0.00 0.00 40.69 3.01
2316 2532 3.601537 TCTAGGAAGGGACTAGGGACTTT 59.398 47.826 0.00 0.00 38.49 2.66
2317 2533 3.293215 AGGAAGGGACTAGGGACTTTT 57.707 47.619 0.00 0.00 38.49 2.27
2318 2534 3.610260 AGGAAGGGACTAGGGACTTTTT 58.390 45.455 0.00 0.00 38.49 1.94
2319 2535 4.771338 AGGAAGGGACTAGGGACTTTTTA 58.229 43.478 0.00 0.00 38.49 1.52
2320 2536 4.783763 AGGAAGGGACTAGGGACTTTTTAG 59.216 45.833 0.00 0.00 38.49 1.85
2321 2537 4.535294 GGAAGGGACTAGGGACTTTTTAGT 59.465 45.833 0.00 0.00 38.49 2.24
2322 2538 5.338219 GGAAGGGACTAGGGACTTTTTAGTC 60.338 48.000 0.00 3.01 38.49 2.59
2323 2539 5.026093 AGGGACTAGGGACTTTTTAGTCT 57.974 43.478 9.84 0.00 41.77 3.24
2324 2540 5.024785 AGGGACTAGGGACTTTTTAGTCTC 58.975 45.833 9.84 6.72 42.56 3.36
2326 2542 6.193504 GGGACTAGGGACTTTTTAGTCTCTA 58.806 44.000 12.86 12.86 46.84 2.43
2332 2548 7.613551 AGGGACTTTTTAGTCTCTAGAAACA 57.386 36.000 5.91 0.00 46.84 2.83
2333 2549 8.030913 AGGGACTTTTTAGTCTCTAGAAACAA 57.969 34.615 5.91 0.00 46.84 2.83
2334 2550 8.491958 AGGGACTTTTTAGTCTCTAGAAACAAA 58.508 33.333 5.91 0.00 46.84 2.83
2335 2551 8.557864 GGGACTTTTTAGTCTCTAGAAACAAAC 58.442 37.037 0.00 0.00 36.42 2.93
2336 2552 9.106070 GGACTTTTTAGTCTCTAGAAACAAACA 57.894 33.333 0.00 0.00 38.74 2.83
2338 2554 9.110502 ACTTTTTAGTCTCTAGAAACAAACAGG 57.889 33.333 0.00 0.00 0.00 4.00
2339 2555 8.446599 TTTTTAGTCTCTAGAAACAAACAGGG 57.553 34.615 0.00 0.00 0.00 4.45
2340 2556 6.989155 TTAGTCTCTAGAAACAAACAGGGA 57.011 37.500 0.00 0.00 0.00 4.20
2341 2557 5.476091 AGTCTCTAGAAACAAACAGGGAG 57.524 43.478 0.00 0.00 0.00 4.30
2342 2558 4.284746 AGTCTCTAGAAACAAACAGGGAGG 59.715 45.833 0.00 0.00 0.00 4.30
2343 2559 3.583086 TCTCTAGAAACAAACAGGGAGGG 59.417 47.826 0.00 0.00 0.00 4.30
2344 2560 3.583086 CTCTAGAAACAAACAGGGAGGGA 59.417 47.826 0.00 0.00 0.00 4.20
2345 2561 2.658807 AGAAACAAACAGGGAGGGAC 57.341 50.000 0.00 0.00 0.00 4.46
2347 2563 2.514160 AGAAACAAACAGGGAGGGACTT 59.486 45.455 0.00 0.00 41.55 3.01
2348 2564 3.052869 AGAAACAAACAGGGAGGGACTTT 60.053 43.478 0.00 0.00 41.55 2.66
2349 2565 3.398318 AACAAACAGGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
2350 2566 3.398318 ACAAACAGGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
2351 2567 4.529716 ACAAACAGGGAGGGACTTTTTA 57.470 40.909 0.00 0.00 41.55 1.52
2352 2568 4.470602 ACAAACAGGGAGGGACTTTTTAG 58.529 43.478 0.00 0.00 41.55 1.85
2353 2569 3.808834 AACAGGGAGGGACTTTTTAGG 57.191 47.619 0.00 0.00 41.55 2.69
2354 2570 1.993301 ACAGGGAGGGACTTTTTAGGG 59.007 52.381 0.00 0.00 41.55 3.53
2355 2571 2.275466 CAGGGAGGGACTTTTTAGGGA 58.725 52.381 0.00 0.00 41.55 4.20
2356 2572 2.026169 CAGGGAGGGACTTTTTAGGGAC 60.026 54.545 0.00 0.00 41.55 4.46
2357 2573 2.157833 AGGGAGGGACTTTTTAGGGACT 60.158 50.000 0.00 0.00 41.55 3.85
2358 2574 3.080153 AGGGAGGGACTTTTTAGGGACTA 59.920 47.826 0.00 0.00 41.55 2.59
2359 2575 3.455177 GGGAGGGACTTTTTAGGGACTAG 59.545 52.174 0.00 0.00 40.88 2.57
2360 2576 3.455177 GGAGGGACTTTTTAGGGACTAGG 59.545 52.174 0.00 0.00 40.88 3.02
2361 2577 3.455177 GAGGGACTTTTTAGGGACTAGGG 59.545 52.174 0.00 0.00 40.88 3.53
2362 2578 3.080153 AGGGACTTTTTAGGGACTAGGGA 59.920 47.826 0.00 0.00 37.71 4.20
2363 2579 3.199508 GGGACTTTTTAGGGACTAGGGAC 59.800 52.174 0.00 0.00 44.25 4.46
2364 2580 4.102598 GGACTTTTTAGGGACTAGGGACT 58.897 47.826 0.00 0.00 44.25 3.85
2365 2581 4.535294 GGACTTTTTAGGGACTAGGGACTT 59.465 45.833 0.00 0.00 44.25 3.01
2366 2582 5.013913 GGACTTTTTAGGGACTAGGGACTTT 59.986 44.000 0.00 0.00 44.25 2.66
2367 2583 6.466904 GGACTTTTTAGGGACTAGGGACTTTT 60.467 42.308 0.00 0.00 44.25 2.27
2368 2584 6.919158 ACTTTTTAGGGACTAGGGACTTTTT 58.081 36.000 0.00 0.00 44.25 1.94
2369 2585 8.049165 ACTTTTTAGGGACTAGGGACTTTTTA 57.951 34.615 0.00 0.00 44.25 1.52
2370 2586 8.162085 ACTTTTTAGGGACTAGGGACTTTTTAG 58.838 37.037 0.00 0.00 44.25 1.85
2371 2587 7.637548 TTTTAGGGACTAGGGACTTTTTAGT 57.362 36.000 0.00 0.00 44.25 2.24
2372 2588 7.637548 TTTAGGGACTAGGGACTTTTTAGTT 57.362 36.000 0.00 0.00 44.25 2.24
2373 2589 5.500546 AGGGACTAGGGACTTTTTAGTTG 57.499 43.478 0.00 0.00 41.75 3.16
2374 2590 4.288887 AGGGACTAGGGACTTTTTAGTTGG 59.711 45.833 0.00 0.00 41.75 3.77
2375 2591 4.567116 GGGACTAGGGACTTTTTAGTTGGG 60.567 50.000 0.00 0.00 41.75 4.12
2376 2592 4.287845 GGACTAGGGACTTTTTAGTTGGGA 59.712 45.833 0.00 0.00 41.75 4.37
2377 2593 5.238624 ACTAGGGACTTTTTAGTTGGGAC 57.761 43.478 0.00 0.00 41.75 4.46
2378 2594 4.912133 ACTAGGGACTTTTTAGTTGGGACT 59.088 41.667 0.00 0.00 41.75 3.85
2379 2595 6.086775 ACTAGGGACTTTTTAGTTGGGACTA 58.913 40.000 0.00 0.00 41.75 2.59
2380 2596 5.500546 AGGGACTTTTTAGTTGGGACTAG 57.499 43.478 0.00 0.00 35.67 2.57
2381 2597 5.160386 AGGGACTTTTTAGTTGGGACTAGA 58.840 41.667 0.00 0.00 35.67 2.43
2382 2598 5.609708 AGGGACTTTTTAGTTGGGACTAGAA 59.390 40.000 0.00 0.00 35.67 2.10
2383 2599 6.102174 AGGGACTTTTTAGTTGGGACTAGAAA 59.898 38.462 0.00 3.34 39.04 2.52
2384 2600 6.774170 GGGACTTTTTAGTTGGGACTAGAAAA 59.226 38.462 0.00 5.68 40.10 2.29
2385 2601 7.286087 GGGACTTTTTAGTTGGGACTAGAAAAA 59.714 37.037 0.00 0.00 40.10 1.94
2386 2602 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
2387 2603 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
2408 2624 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
2409 2625 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
2410 2626 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
2411 2627 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
2412 2628 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
2413 2629 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
2414 2630 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
2415 2631 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
2416 2632 4.228824 ACTAGAGAACCAAACACCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
2417 2633 4.657039 ACTAGAGAACCAAACACCACCTAA 59.343 41.667 0.00 0.00 0.00 2.69
2418 2634 4.086706 AGAGAACCAAACACCACCTAAG 57.913 45.455 0.00 0.00 0.00 2.18
2419 2635 3.458487 AGAGAACCAAACACCACCTAAGT 59.542 43.478 0.00 0.00 0.00 2.24
2420 2636 3.813724 GAGAACCAAACACCACCTAAGTC 59.186 47.826 0.00 0.00 0.00 3.01
2421 2637 3.201266 AGAACCAAACACCACCTAAGTCA 59.799 43.478 0.00 0.00 0.00 3.41
2422 2638 2.927028 ACCAAACACCACCTAAGTCAC 58.073 47.619 0.00 0.00 0.00 3.67
2423 2639 2.227194 CCAAACACCACCTAAGTCACC 58.773 52.381 0.00 0.00 0.00 4.02
2424 2640 2.158667 CCAAACACCACCTAAGTCACCT 60.159 50.000 0.00 0.00 0.00 4.00
2425 2641 2.878406 CAAACACCACCTAAGTCACCTG 59.122 50.000 0.00 0.00 0.00 4.00
2426 2642 2.097110 ACACCACCTAAGTCACCTGA 57.903 50.000 0.00 0.00 0.00 3.86
2427 2643 1.692519 ACACCACCTAAGTCACCTGAC 59.307 52.381 0.00 0.00 45.08 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.903820 GTTAACAAATATCATAAGCCCACTCTT 58.096 33.333 0.00 0.00 0.00 2.85
47 48 8.557029 CCCTTGATCGTAAGGTTAACAAATATC 58.443 37.037 8.10 3.46 44.65 1.63
50 51 5.650703 CCCCTTGATCGTAAGGTTAACAAAT 59.349 40.000 8.10 0.00 44.65 2.32
57 58 1.838077 CTCCCCCTTGATCGTAAGGTT 59.162 52.381 10.17 0.00 44.65 3.50
110 111 1.133450 TGGACTCCCCCTCTTATCTCG 60.133 57.143 0.00 0.00 0.00 4.04
137 138 1.501741 CCCGATCAAAGCACCAACG 59.498 57.895 0.00 0.00 0.00 4.10
138 139 1.595093 CCCCCGATCAAAGCACCAAC 61.595 60.000 0.00 0.00 0.00 3.77
222 226 6.585695 TTTCTTATCTGAAGAGGTACGTGT 57.414 37.500 0.00 0.00 0.00 4.49
278 282 4.098807 AGCTCTCTCTTTTAGGATCGGTTC 59.901 45.833 0.00 0.00 0.00 3.62
296 300 0.619832 TCTTCCAGCCCATCAGCTCT 60.620 55.000 0.00 0.00 42.61 4.09
356 360 1.768684 AAGATGGACGTGCAGGGTGT 61.769 55.000 16.77 0.00 0.00 4.16
411 415 4.463879 CTGCCGTGAGCCTCCTGG 62.464 72.222 0.00 0.00 42.71 4.45
441 445 4.724602 GCGTCGCTCACCAGCTGA 62.725 66.667 17.39 0.00 44.40 4.26
665 671 3.673902 CCAAACATTCAAACAATCCCCC 58.326 45.455 0.00 0.00 0.00 5.40
861 868 6.266168 TGCAGGTTAATGGAGTTAATGTTG 57.734 37.500 0.00 0.00 34.93 3.33
944 951 6.419484 TTCCTGTCTGTGAAGTATCAAAGA 57.581 37.500 0.00 0.00 45.73 2.52
952 959 3.181450 CCTTCCTTTCCTGTCTGTGAAGT 60.181 47.826 0.00 0.00 0.00 3.01
1135 1145 1.965754 GCATCGCCTTCAGACCCTCT 61.966 60.000 0.00 0.00 0.00 3.69
1443 1463 0.179108 CCTAGTGCTGCTACGGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
1446 1466 1.668101 GCTCCTAGTGCTGCTACGGT 61.668 60.000 0.00 0.00 0.00 4.83
1554 1574 3.694535 AGCTTCATACGTACTCCTTCG 57.305 47.619 0.00 0.00 0.00 3.79
1587 1611 5.004448 TGCCGTAAGTGGTCATTTATTTGA 58.996 37.500 0.00 0.00 0.00 2.69
1627 1652 7.861372 ACAGCAACGTACATATAGAGACATTAC 59.139 37.037 0.00 0.00 0.00 1.89
1657 1762 2.148768 TGCTGAGAGTGCAAGATTGTG 58.851 47.619 0.00 0.00 37.51 3.33
1663 1768 3.069289 TGTAACATGCTGAGAGTGCAAG 58.931 45.455 0.00 0.00 44.01 4.01
1689 1794 9.709495 ATTTAACAAATGAAAGTACATGCATGT 57.291 25.926 33.20 33.20 44.48 3.21
1692 1797 8.910666 CGAATTTAACAAATGAAAGTACATGCA 58.089 29.630 0.00 0.00 0.00 3.96
1710 1818 9.661563 ACTTAACATATCTGACACCGAATTTAA 57.338 29.630 0.00 0.00 0.00 1.52
1762 1871 6.657117 TGATGAATAACCGTGATCCTCAAAAA 59.343 34.615 0.00 0.00 0.00 1.94
1763 1872 6.176896 TGATGAATAACCGTGATCCTCAAAA 58.823 36.000 0.00 0.00 0.00 2.44
1764 1873 5.739959 TGATGAATAACCGTGATCCTCAAA 58.260 37.500 0.00 0.00 0.00 2.69
1765 1874 5.351948 TGATGAATAACCGTGATCCTCAA 57.648 39.130 0.00 0.00 0.00 3.02
1766 1875 5.551305 ATGATGAATAACCGTGATCCTCA 57.449 39.130 0.00 0.00 0.00 3.86
1767 1876 6.260936 ACAAATGATGAATAACCGTGATCCTC 59.739 38.462 0.00 0.00 0.00 3.71
1768 1877 6.122277 ACAAATGATGAATAACCGTGATCCT 58.878 36.000 0.00 0.00 0.00 3.24
1769 1878 6.377327 ACAAATGATGAATAACCGTGATCC 57.623 37.500 0.00 0.00 0.00 3.36
1770 1879 6.692681 CCAACAAATGATGAATAACCGTGATC 59.307 38.462 0.00 0.00 0.00 2.92
1771 1880 6.563422 CCAACAAATGATGAATAACCGTGAT 58.437 36.000 0.00 0.00 0.00 3.06
1772 1881 5.621104 GCCAACAAATGATGAATAACCGTGA 60.621 40.000 0.00 0.00 0.00 4.35
1773 1882 4.562394 GCCAACAAATGATGAATAACCGTG 59.438 41.667 0.00 0.00 0.00 4.94
1774 1883 4.219507 TGCCAACAAATGATGAATAACCGT 59.780 37.500 0.00 0.00 0.00 4.83
1775 1884 4.742417 TGCCAACAAATGATGAATAACCG 58.258 39.130 0.00 0.00 0.00 4.44
1776 1885 5.111293 CCTGCCAACAAATGATGAATAACC 58.889 41.667 0.00 0.00 0.00 2.85
1777 1886 4.567959 GCCTGCCAACAAATGATGAATAAC 59.432 41.667 0.00 0.00 0.00 1.89
1778 1887 4.677514 CGCCTGCCAACAAATGATGAATAA 60.678 41.667 0.00 0.00 0.00 1.40
1779 1888 3.181488 CGCCTGCCAACAAATGATGAATA 60.181 43.478 0.00 0.00 0.00 1.75
1780 1889 2.417651 CGCCTGCCAACAAATGATGAAT 60.418 45.455 0.00 0.00 0.00 2.57
1781 1890 1.067706 CGCCTGCCAACAAATGATGAA 60.068 47.619 0.00 0.00 0.00 2.57
1782 1891 0.527113 CGCCTGCCAACAAATGATGA 59.473 50.000 0.00 0.00 0.00 2.92
1783 1892 0.527113 TCGCCTGCCAACAAATGATG 59.473 50.000 0.00 0.00 0.00 3.07
1784 1893 1.203052 CTTCGCCTGCCAACAAATGAT 59.797 47.619 0.00 0.00 0.00 2.45
1785 1894 0.597568 CTTCGCCTGCCAACAAATGA 59.402 50.000 0.00 0.00 0.00 2.57
1786 1895 1.010419 GCTTCGCCTGCCAACAAATG 61.010 55.000 0.00 0.00 0.00 2.32
1787 1896 1.181098 AGCTTCGCCTGCCAACAAAT 61.181 50.000 0.00 0.00 0.00 2.32
1788 1897 1.391157 AAGCTTCGCCTGCCAACAAA 61.391 50.000 0.00 0.00 0.00 2.83
1789 1898 1.795170 GAAGCTTCGCCTGCCAACAA 61.795 55.000 11.40 0.00 0.00 2.83
1799 1908 0.109781 TCGGCAAAATGAAGCTTCGC 60.110 50.000 21.11 16.75 0.00 4.70
1800 1909 1.978782 GTTCGGCAAAATGAAGCTTCG 59.021 47.619 21.11 7.72 0.00 3.79
1809 1918 2.612721 GGAGCAAATGGTTCGGCAAAAT 60.613 45.455 0.00 0.00 0.00 1.82
1836 1945 3.304057 GCAGACGGTTCTTTTCTTCTTGG 60.304 47.826 0.00 0.00 0.00 3.61
1837 1946 3.561725 AGCAGACGGTTCTTTTCTTCTTG 59.438 43.478 0.00 0.00 0.00 3.02
1863 1975 7.792374 TCAAGCATTCAATTAGCTAACTAGG 57.208 36.000 8.70 0.00 37.70 3.02
1942 2158 4.096003 CTGGGACCCGCGTGGATT 62.096 66.667 18.79 1.95 37.49 3.01
1968 2184 2.543777 ATGTATATGGGACGTGGCAC 57.456 50.000 7.79 7.79 0.00 5.01
1969 2185 3.898741 TCTTATGTATATGGGACGTGGCA 59.101 43.478 0.00 0.00 0.00 4.92
1970 2186 4.530710 TCTTATGTATATGGGACGTGGC 57.469 45.455 0.00 0.00 0.00 5.01
1971 2187 6.097915 ACTTCTTATGTATATGGGACGTGG 57.902 41.667 0.00 0.00 0.00 4.94
1972 2188 7.207383 TCAACTTCTTATGTATATGGGACGTG 58.793 38.462 0.00 0.00 0.00 4.49
1973 2189 7.356089 TCAACTTCTTATGTATATGGGACGT 57.644 36.000 0.00 0.00 0.00 4.34
1974 2190 7.545965 GGATCAACTTCTTATGTATATGGGACG 59.454 40.741 0.00 0.00 0.00 4.79
1975 2191 7.824779 GGGATCAACTTCTTATGTATATGGGAC 59.175 40.741 0.00 0.00 0.00 4.46
1976 2192 7.037586 GGGGATCAACTTCTTATGTATATGGGA 60.038 40.741 0.00 0.00 0.00 4.37
1977 2193 7.112779 GGGGATCAACTTCTTATGTATATGGG 58.887 42.308 0.00 0.00 0.00 4.00
1978 2194 7.607991 GTGGGGATCAACTTCTTATGTATATGG 59.392 40.741 0.00 0.00 0.00 2.74
1979 2195 8.378565 AGTGGGGATCAACTTCTTATGTATATG 58.621 37.037 0.00 0.00 0.00 1.78
1980 2196 8.511748 AGTGGGGATCAACTTCTTATGTATAT 57.488 34.615 0.00 0.00 0.00 0.86
1981 2197 7.931015 AGTGGGGATCAACTTCTTATGTATA 57.069 36.000 0.00 0.00 0.00 1.47
1982 2198 6.831664 AGTGGGGATCAACTTCTTATGTAT 57.168 37.500 0.00 0.00 0.00 2.29
1983 2199 7.567250 TGATAGTGGGGATCAACTTCTTATGTA 59.433 37.037 0.00 0.00 30.35 2.29
1984 2200 6.386927 TGATAGTGGGGATCAACTTCTTATGT 59.613 38.462 0.00 0.00 30.35 2.29
1985 2201 6.830912 TGATAGTGGGGATCAACTTCTTATG 58.169 40.000 0.00 0.00 30.35 1.90
1986 2202 6.043706 CCTGATAGTGGGGATCAACTTCTTAT 59.956 42.308 0.00 0.00 33.01 1.73
1987 2203 5.366768 CCTGATAGTGGGGATCAACTTCTTA 59.633 44.000 0.00 0.00 33.01 2.10
1988 2204 4.164988 CCTGATAGTGGGGATCAACTTCTT 59.835 45.833 0.00 0.00 33.01 2.52
1989 2205 3.713764 CCTGATAGTGGGGATCAACTTCT 59.286 47.826 0.00 0.00 33.01 2.85
1990 2206 3.181450 CCCTGATAGTGGGGATCAACTTC 60.181 52.174 0.00 0.00 45.18 3.01
1991 2207 2.780010 CCCTGATAGTGGGGATCAACTT 59.220 50.000 0.00 0.00 45.18 2.66
1992 2208 2.412591 CCCTGATAGTGGGGATCAACT 58.587 52.381 0.00 0.00 45.18 3.16
1993 2209 2.938956 CCCTGATAGTGGGGATCAAC 57.061 55.000 0.00 0.00 45.18 3.18
2001 2217 2.305927 ACCAAACAGACCCTGATAGTGG 59.694 50.000 0.45 5.11 35.18 4.00
2002 2218 3.703001 ACCAAACAGACCCTGATAGTG 57.297 47.619 0.45 0.00 35.18 2.74
2003 2219 4.104102 TGAAACCAAACAGACCCTGATAGT 59.896 41.667 0.45 0.00 35.18 2.12
2004 2220 4.651778 TGAAACCAAACAGACCCTGATAG 58.348 43.478 0.45 0.00 35.18 2.08
2005 2221 4.715534 TGAAACCAAACAGACCCTGATA 57.284 40.909 0.45 0.00 35.18 2.15
2006 2222 3.593442 TGAAACCAAACAGACCCTGAT 57.407 42.857 0.45 0.00 35.18 2.90
2007 2223 3.374042 TTGAAACCAAACAGACCCTGA 57.626 42.857 0.45 0.00 35.18 3.86
2008 2224 5.278957 CCTTATTGAAACCAAACAGACCCTG 60.279 44.000 0.00 0.00 37.52 4.45
2009 2225 4.832823 CCTTATTGAAACCAAACAGACCCT 59.167 41.667 0.00 0.00 0.00 4.34
2010 2226 4.021456 CCCTTATTGAAACCAAACAGACCC 60.021 45.833 0.00 0.00 0.00 4.46
2011 2227 4.021456 CCCCTTATTGAAACCAAACAGACC 60.021 45.833 0.00 0.00 0.00 3.85
2012 2228 4.587262 ACCCCTTATTGAAACCAAACAGAC 59.413 41.667 0.00 0.00 0.00 3.51
2013 2229 4.586841 CACCCCTTATTGAAACCAAACAGA 59.413 41.667 0.00 0.00 0.00 3.41
2014 2230 4.343814 ACACCCCTTATTGAAACCAAACAG 59.656 41.667 0.00 0.00 0.00 3.16
2015 2231 4.290942 ACACCCCTTATTGAAACCAAACA 58.709 39.130 0.00 0.00 0.00 2.83
2016 2232 4.948341 ACACCCCTTATTGAAACCAAAC 57.052 40.909 0.00 0.00 0.00 2.93
2017 2233 5.189934 ACAAACACCCCTTATTGAAACCAAA 59.810 36.000 0.00 0.00 0.00 3.28
2018 2234 4.717280 ACAAACACCCCTTATTGAAACCAA 59.283 37.500 0.00 0.00 0.00 3.67
2019 2235 4.290942 ACAAACACCCCTTATTGAAACCA 58.709 39.130 0.00 0.00 0.00 3.67
2020 2236 4.948341 ACAAACACCCCTTATTGAAACC 57.052 40.909 0.00 0.00 0.00 3.27
2021 2237 5.756347 GGAAACAAACACCCCTTATTGAAAC 59.244 40.000 0.00 0.00 0.00 2.78
2022 2238 5.425539 TGGAAACAAACACCCCTTATTGAAA 59.574 36.000 0.00 0.00 37.44 2.69
2023 2239 4.962995 TGGAAACAAACACCCCTTATTGAA 59.037 37.500 0.00 0.00 37.44 2.69
2024 2240 4.547671 TGGAAACAAACACCCCTTATTGA 58.452 39.130 0.00 0.00 37.44 2.57
2025 2241 4.262420 CCTGGAAACAAACACCCCTTATTG 60.262 45.833 0.00 0.00 42.06 1.90
2026 2242 3.901222 CCTGGAAACAAACACCCCTTATT 59.099 43.478 0.00 0.00 42.06 1.40
2027 2243 3.506398 CCTGGAAACAAACACCCCTTAT 58.494 45.455 0.00 0.00 42.06 1.73
2028 2244 2.425102 CCCTGGAAACAAACACCCCTTA 60.425 50.000 0.00 0.00 42.06 2.69
2029 2245 1.691163 CCCTGGAAACAAACACCCCTT 60.691 52.381 0.00 0.00 42.06 3.95
2030 2246 0.105709 CCCTGGAAACAAACACCCCT 60.106 55.000 0.00 0.00 42.06 4.79
2031 2247 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
2032 2248 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
2033 2249 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
2034 2250 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
2053 2269 8.217131 GACTTTTTCTAGTCCCTACACAAAAA 57.783 34.615 0.00 0.00 38.88 1.94
2054 2270 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
2065 2281 7.395206 AGTCTCTAAGAGGGACTTTTTCTAGTC 59.605 40.741 3.06 0.00 41.55 2.59
2066 2282 7.243091 AGTCTCTAAGAGGGACTTTTTCTAGT 58.757 38.462 3.06 0.00 41.55 2.57
2067 2283 7.712204 AGTCTCTAAGAGGGACTTTTTCTAG 57.288 40.000 3.06 0.00 41.55 2.43
2092 2308 3.529216 ATCCCTCCCGTTTGGTAAAAA 57.471 42.857 0.00 0.00 34.77 1.94
2093 2309 3.529216 AATCCCTCCCGTTTGGTAAAA 57.471 42.857 0.00 0.00 34.77 1.52
2094 2310 3.529216 AAATCCCTCCCGTTTGGTAAA 57.471 42.857 0.00 0.00 34.77 2.01
2095 2311 3.529216 AAAATCCCTCCCGTTTGGTAA 57.471 42.857 0.00 0.00 34.77 2.85
2096 2312 3.529216 AAAAATCCCTCCCGTTTGGTA 57.471 42.857 0.00 0.00 34.77 3.25
2097 2313 2.391926 AAAAATCCCTCCCGTTTGGT 57.608 45.000 0.00 0.00 34.77 3.67
2098 2314 2.758423 CCTAAAAATCCCTCCCGTTTGG 59.242 50.000 0.00 0.00 0.00 3.28
2099 2315 2.758423 CCCTAAAAATCCCTCCCGTTTG 59.242 50.000 0.00 0.00 0.00 2.93
2100 2316 2.650827 TCCCTAAAAATCCCTCCCGTTT 59.349 45.455 0.00 0.00 0.00 3.60
2101 2317 2.025605 GTCCCTAAAAATCCCTCCCGTT 60.026 50.000 0.00 0.00 0.00 4.44
2102 2318 1.562942 GTCCCTAAAAATCCCTCCCGT 59.437 52.381 0.00 0.00 0.00 5.28
2103 2319 1.844497 AGTCCCTAAAAATCCCTCCCG 59.156 52.381 0.00 0.00 0.00 5.14
2104 2320 5.044328 AGTTTAGTCCCTAAAAATCCCTCCC 60.044 44.000 0.00 0.00 37.62 4.30
2105 2321 6.075949 AGTTTAGTCCCTAAAAATCCCTCC 57.924 41.667 0.00 0.00 37.62 4.30
2106 2322 7.281098 CCTAGTTTAGTCCCTAAAAATCCCTC 58.719 42.308 0.00 0.00 37.62 4.30
2107 2323 6.353689 GCCTAGTTTAGTCCCTAAAAATCCCT 60.354 42.308 0.00 0.00 37.62 4.20
2108 2324 5.826737 GCCTAGTTTAGTCCCTAAAAATCCC 59.173 44.000 0.00 0.00 37.62 3.85
2109 2325 6.420638 TGCCTAGTTTAGTCCCTAAAAATCC 58.579 40.000 0.00 0.00 37.62 3.01
2110 2326 8.521170 AATGCCTAGTTTAGTCCCTAAAAATC 57.479 34.615 0.00 0.00 37.62 2.17
2111 2327 8.749354 CAAATGCCTAGTTTAGTCCCTAAAAAT 58.251 33.333 0.00 0.00 37.62 1.82
2112 2328 7.177744 CCAAATGCCTAGTTTAGTCCCTAAAAA 59.822 37.037 0.00 0.00 37.62 1.94
2113 2329 6.661805 CCAAATGCCTAGTTTAGTCCCTAAAA 59.338 38.462 0.00 0.00 37.62 1.52
2114 2330 6.184789 CCAAATGCCTAGTTTAGTCCCTAAA 58.815 40.000 0.00 0.00 34.12 1.85
2115 2331 5.339695 CCCAAATGCCTAGTTTAGTCCCTAA 60.340 44.000 0.00 0.00 0.00 2.69
2116 2332 4.165372 CCCAAATGCCTAGTTTAGTCCCTA 59.835 45.833 0.00 0.00 0.00 3.53
2117 2333 3.053619 CCCAAATGCCTAGTTTAGTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
2118 2334 3.053917 TCCCAAATGCCTAGTTTAGTCCC 60.054 47.826 0.00 0.00 0.00 4.46
2119 2335 3.945921 GTCCCAAATGCCTAGTTTAGTCC 59.054 47.826 0.00 0.00 0.00 3.85
2120 2336 4.844884 AGTCCCAAATGCCTAGTTTAGTC 58.155 43.478 0.00 0.00 0.00 2.59
2121 2337 4.929146 AGTCCCAAATGCCTAGTTTAGT 57.071 40.909 0.00 0.00 0.00 2.24
2122 2338 7.556275 TCATTTAGTCCCAAATGCCTAGTTTAG 59.444 37.037 4.14 0.00 42.89 1.85
2123 2339 7.406916 TCATTTAGTCCCAAATGCCTAGTTTA 58.593 34.615 4.14 0.00 42.89 2.01
2124 2340 6.252995 TCATTTAGTCCCAAATGCCTAGTTT 58.747 36.000 4.14 0.00 42.89 2.66
2125 2341 5.826643 TCATTTAGTCCCAAATGCCTAGTT 58.173 37.500 4.14 0.00 42.89 2.24
2126 2342 5.450818 TCATTTAGTCCCAAATGCCTAGT 57.549 39.130 4.14 0.00 42.89 2.57
2127 2343 6.122277 TCTTCATTTAGTCCCAAATGCCTAG 58.878 40.000 4.14 0.00 42.89 3.02
2128 2344 6.073447 TCTTCATTTAGTCCCAAATGCCTA 57.927 37.500 4.14 0.00 42.89 3.93
2129 2345 4.934356 TCTTCATTTAGTCCCAAATGCCT 58.066 39.130 4.14 0.00 42.89 4.75
2130 2346 5.418840 TCTTCTTCATTTAGTCCCAAATGCC 59.581 40.000 4.14 0.00 42.89 4.40
2131 2347 6.151817 AGTCTTCTTCATTTAGTCCCAAATGC 59.848 38.462 4.14 0.00 42.89 3.56
2132 2348 7.609532 AGAGTCTTCTTCATTTAGTCCCAAATG 59.390 37.037 2.83 2.83 44.00 2.32
2133 2349 7.694093 AGAGTCTTCTTCATTTAGTCCCAAAT 58.306 34.615 0.00 0.00 0.00 2.32
2134 2350 7.079451 AGAGTCTTCTTCATTTAGTCCCAAA 57.921 36.000 0.00 0.00 0.00 3.28
2135 2351 6.270000 TGAGAGTCTTCTTCATTTAGTCCCAA 59.730 38.462 0.00 0.00 32.53 4.12
2136 2352 5.780282 TGAGAGTCTTCTTCATTTAGTCCCA 59.220 40.000 0.00 0.00 32.53 4.37
2137 2353 6.287589 TGAGAGTCTTCTTCATTTAGTCCC 57.712 41.667 0.00 0.00 32.53 4.46
2138 2354 7.607250 TCTTGAGAGTCTTCTTCATTTAGTCC 58.393 38.462 0.00 0.00 32.53 3.85
2139 2355 9.139174 CTTCTTGAGAGTCTTCTTCATTTAGTC 57.861 37.037 0.00 0.00 32.53 2.59
2140 2356 8.865090 TCTTCTTGAGAGTCTTCTTCATTTAGT 58.135 33.333 0.00 0.00 32.53 2.24
2141 2357 9.357652 CTCTTCTTGAGAGTCTTCTTCATTTAG 57.642 37.037 0.00 0.00 45.69 1.85
2168 2384 6.850752 AAGTCCCAAAAAGTCTCAAAAAGA 57.149 33.333 0.00 0.00 0.00 2.52
2169 2385 7.064609 GGAAAAGTCCCAAAAAGTCTCAAAAAG 59.935 37.037 0.00 0.00 38.08 2.27
2170 2386 6.876789 GGAAAAGTCCCAAAAAGTCTCAAAAA 59.123 34.615 0.00 0.00 38.08 1.94
2171 2387 6.014156 TGGAAAAGTCCCAAAAAGTCTCAAAA 60.014 34.615 0.00 0.00 44.23 2.44
2172 2388 5.482175 TGGAAAAGTCCCAAAAAGTCTCAAA 59.518 36.000 0.00 0.00 44.23 2.69
2173 2389 5.020132 TGGAAAAGTCCCAAAAAGTCTCAA 58.980 37.500 0.00 0.00 44.23 3.02
2174 2390 4.605183 TGGAAAAGTCCCAAAAAGTCTCA 58.395 39.130 0.00 0.00 44.23 3.27
2175 2391 5.592104 TTGGAAAAGTCCCAAAAAGTCTC 57.408 39.130 0.00 0.00 44.23 3.36
2176 2392 7.669089 TTATTGGAAAAGTCCCAAAAAGTCT 57.331 32.000 0.00 0.00 45.67 3.24
2177 2393 7.095229 GCATTATTGGAAAAGTCCCAAAAAGTC 60.095 37.037 0.00 0.00 45.67 3.01
2178 2394 6.710295 GCATTATTGGAAAAGTCCCAAAAAGT 59.290 34.615 0.00 0.00 45.67 2.66
2179 2395 6.149308 GGCATTATTGGAAAAGTCCCAAAAAG 59.851 38.462 0.00 0.00 45.67 2.27
2180 2396 6.000840 GGCATTATTGGAAAAGTCCCAAAAA 58.999 36.000 0.00 0.00 45.67 1.94
2181 2397 5.513962 GGGCATTATTGGAAAAGTCCCAAAA 60.514 40.000 0.00 0.00 45.67 2.44
2182 2398 4.019771 GGGCATTATTGGAAAAGTCCCAAA 60.020 41.667 0.00 0.00 45.67 3.28
2183 2399 3.517500 GGGCATTATTGGAAAAGTCCCAA 59.482 43.478 0.00 0.00 46.48 4.12
2184 2400 3.103742 GGGCATTATTGGAAAAGTCCCA 58.896 45.455 0.00 0.00 44.23 4.37
2185 2401 2.434336 GGGGCATTATTGGAAAAGTCCC 59.566 50.000 0.00 0.00 44.23 4.46
2186 2402 3.374764 AGGGGCATTATTGGAAAAGTCC 58.625 45.455 0.00 0.00 45.21 3.85
2187 2403 3.384789 GGAGGGGCATTATTGGAAAAGTC 59.615 47.826 0.00 0.00 0.00 3.01
2188 2404 3.245948 TGGAGGGGCATTATTGGAAAAGT 60.246 43.478 0.00 0.00 0.00 2.66
2189 2405 3.373830 TGGAGGGGCATTATTGGAAAAG 58.626 45.455 0.00 0.00 0.00 2.27
2190 2406 3.481559 TGGAGGGGCATTATTGGAAAA 57.518 42.857 0.00 0.00 0.00 2.29
2191 2407 3.307506 CATGGAGGGGCATTATTGGAAA 58.692 45.455 0.00 0.00 0.00 3.13
2192 2408 2.961510 CATGGAGGGGCATTATTGGAA 58.038 47.619 0.00 0.00 0.00 3.53
2193 2409 1.481055 GCATGGAGGGGCATTATTGGA 60.481 52.381 0.00 0.00 0.00 3.53
2194 2410 0.971386 GCATGGAGGGGCATTATTGG 59.029 55.000 0.00 0.00 0.00 3.16
2195 2411 1.342174 GTGCATGGAGGGGCATTATTG 59.658 52.381 0.00 0.00 42.75 1.90
2196 2412 1.708341 GTGCATGGAGGGGCATTATT 58.292 50.000 0.00 0.00 42.75 1.40
2197 2413 0.178953 GGTGCATGGAGGGGCATTAT 60.179 55.000 0.00 0.00 42.75 1.28
2198 2414 1.229927 GGTGCATGGAGGGGCATTA 59.770 57.895 0.00 0.00 42.75 1.90
2199 2415 2.042639 GGTGCATGGAGGGGCATT 60.043 61.111 0.00 0.00 42.75 3.56
2200 2416 4.147587 GGGTGCATGGAGGGGCAT 62.148 66.667 0.00 0.00 42.75 4.40
2202 2418 3.684369 AATGGGTGCATGGAGGGGC 62.684 63.158 0.00 0.00 0.00 5.80
2203 2419 1.759299 CAATGGGTGCATGGAGGGG 60.759 63.158 0.00 0.00 0.00 4.79
2204 2420 1.759299 CCAATGGGTGCATGGAGGG 60.759 63.158 0.00 0.00 36.27 4.30
2205 2421 2.428925 GCCAATGGGTGCATGGAGG 61.429 63.158 7.48 0.00 36.27 4.30
2206 2422 2.428925 GGCCAATGGGTGCATGGAG 61.429 63.158 7.48 0.00 36.27 3.86
2207 2423 2.364056 GGCCAATGGGTGCATGGA 60.364 61.111 7.48 0.00 36.27 3.41
2208 2424 3.472726 GGGCCAATGGGTGCATGG 61.473 66.667 4.39 0.00 37.29 3.66
2209 2425 3.840594 CGGGCCAATGGGTGCATG 61.841 66.667 4.39 0.00 36.17 4.06
2230 2446 2.368221 ACAATCAAACAACACCATGGGG 59.632 45.455 14.08 14.08 41.29 4.96
2231 2447 3.749665 ACAATCAAACAACACCATGGG 57.250 42.857 18.09 7.72 0.00 4.00
2232 2448 7.727331 AAATAACAATCAAACAACACCATGG 57.273 32.000 11.19 11.19 0.00 3.66
2233 2449 9.649024 GAAAAATAACAATCAAACAACACCATG 57.351 29.630 0.00 0.00 0.00 3.66
2234 2450 9.612066 AGAAAAATAACAATCAAACAACACCAT 57.388 25.926 0.00 0.00 0.00 3.55
2251 2467 9.715121 CGTTGCCCCTAGTATATAGAAAAATAA 57.285 33.333 0.00 0.00 0.00 1.40
2252 2468 8.873144 ACGTTGCCCCTAGTATATAGAAAAATA 58.127 33.333 0.00 0.00 0.00 1.40
2253 2469 7.660208 CACGTTGCCCCTAGTATATAGAAAAAT 59.340 37.037 0.00 0.00 0.00 1.82
2254 2470 6.987992 CACGTTGCCCCTAGTATATAGAAAAA 59.012 38.462 0.00 0.00 0.00 1.94
2255 2471 6.463331 CCACGTTGCCCCTAGTATATAGAAAA 60.463 42.308 0.00 0.00 0.00 2.29
2256 2472 5.011329 CCACGTTGCCCCTAGTATATAGAAA 59.989 44.000 0.00 0.00 0.00 2.52
2257 2473 4.525487 CCACGTTGCCCCTAGTATATAGAA 59.475 45.833 0.00 0.00 0.00 2.10
2258 2474 4.084287 CCACGTTGCCCCTAGTATATAGA 58.916 47.826 0.00 0.00 0.00 1.98
2259 2475 3.830755 ACCACGTTGCCCCTAGTATATAG 59.169 47.826 0.00 0.00 0.00 1.31
2260 2476 3.828451 GACCACGTTGCCCCTAGTATATA 59.172 47.826 0.00 0.00 0.00 0.86
2261 2477 2.631545 GACCACGTTGCCCCTAGTATAT 59.368 50.000 0.00 0.00 0.00 0.86
2262 2478 2.034124 GACCACGTTGCCCCTAGTATA 58.966 52.381 0.00 0.00 0.00 1.47
2263 2479 0.828677 GACCACGTTGCCCCTAGTAT 59.171 55.000 0.00 0.00 0.00 2.12
2264 2480 0.542467 TGACCACGTTGCCCCTAGTA 60.542 55.000 0.00 0.00 0.00 1.82
2265 2481 1.198759 ATGACCACGTTGCCCCTAGT 61.199 55.000 0.00 0.00 0.00 2.57
2266 2482 0.035439 AATGACCACGTTGCCCCTAG 60.035 55.000 0.00 0.00 0.00 3.02
2267 2483 0.402504 AAATGACCACGTTGCCCCTA 59.597 50.000 0.00 0.00 0.00 3.53
2268 2484 0.402504 TAAATGACCACGTTGCCCCT 59.597 50.000 0.00 0.00 0.00 4.79
2269 2485 1.249407 TTAAATGACCACGTTGCCCC 58.751 50.000 0.00 0.00 0.00 5.80
2270 2486 4.417506 GTTATTAAATGACCACGTTGCCC 58.582 43.478 0.00 0.00 0.00 5.36
2271 2487 4.157105 AGGTTATTAAATGACCACGTTGCC 59.843 41.667 6.26 0.00 41.10 4.52
2272 2488 5.123344 AGAGGTTATTAAATGACCACGTTGC 59.877 40.000 6.26 0.00 41.10 4.17
2273 2489 6.737254 AGAGGTTATTAAATGACCACGTTG 57.263 37.500 6.26 0.00 41.10 4.10
2274 2490 7.046033 CCTAGAGGTTATTAAATGACCACGTT 58.954 38.462 6.26 0.00 41.10 3.99
2275 2491 6.381994 TCCTAGAGGTTATTAAATGACCACGT 59.618 38.462 6.26 0.00 41.10 4.49
2276 2492 6.812998 TCCTAGAGGTTATTAAATGACCACG 58.187 40.000 6.26 0.00 41.10 4.94
2277 2493 7.715686 CCTTCCTAGAGGTTATTAAATGACCAC 59.284 40.741 6.26 0.25 41.10 4.16
2278 2494 7.147373 CCCTTCCTAGAGGTTATTAAATGACCA 60.147 40.741 6.26 0.00 41.10 4.02
2279 2495 7.072076 TCCCTTCCTAGAGGTTATTAAATGACC 59.928 40.741 0.00 0.00 39.09 4.02
2280 2496 7.932491 GTCCCTTCCTAGAGGTTATTAAATGAC 59.068 40.741 0.00 0.00 34.88 3.06
2281 2497 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
2282 2498 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
2283 2499 9.382307 CTAGTCCCTTCCTAGAGGTTATTAAAT 57.618 37.037 0.00 0.00 35.01 1.40
2284 2500 7.788385 CCTAGTCCCTTCCTAGAGGTTATTAAA 59.212 40.741 0.00 0.00 35.01 1.52
2285 2501 7.303713 CCTAGTCCCTTCCTAGAGGTTATTAA 58.696 42.308 0.00 0.00 35.01 1.40
2286 2502 6.183361 CCCTAGTCCCTTCCTAGAGGTTATTA 60.183 46.154 0.00 0.00 35.01 0.98
2287 2503 5.401587 CCCTAGTCCCTTCCTAGAGGTTATT 60.402 48.000 0.00 0.00 35.01 1.40
2288 2504 4.108287 CCCTAGTCCCTTCCTAGAGGTTAT 59.892 50.000 0.00 0.00 35.01 1.89
2289 2505 3.466344 CCCTAGTCCCTTCCTAGAGGTTA 59.534 52.174 0.00 0.00 35.01 2.85
2290 2506 2.247897 CCCTAGTCCCTTCCTAGAGGTT 59.752 54.545 0.00 0.00 35.01 3.50
2291 2507 1.860906 CCCTAGTCCCTTCCTAGAGGT 59.139 57.143 0.00 0.00 35.01 3.85
2292 2508 2.145298 TCCCTAGTCCCTTCCTAGAGG 58.855 57.143 0.00 0.00 35.01 3.69
2293 2509 2.787035 AGTCCCTAGTCCCTTCCTAGAG 59.213 54.545 0.00 0.00 35.01 2.43
2294 2510 2.874447 AGTCCCTAGTCCCTTCCTAGA 58.126 52.381 0.00 0.00 35.01 2.43
2295 2511 3.691698 AAGTCCCTAGTCCCTTCCTAG 57.308 52.381 0.00 0.00 33.23 3.02
2296 2512 4.431158 AAAAGTCCCTAGTCCCTTCCTA 57.569 45.455 0.00 0.00 0.00 2.94
2297 2513 3.293215 AAAAGTCCCTAGTCCCTTCCT 57.707 47.619 0.00 0.00 0.00 3.36
2298 2514 4.535294 ACTAAAAAGTCCCTAGTCCCTTCC 59.465 45.833 0.00 0.00 0.00 3.46
2299 2515 5.484644 AGACTAAAAAGTCCCTAGTCCCTTC 59.515 44.000 2.00 0.00 41.59 3.46
2300 2516 5.413277 AGACTAAAAAGTCCCTAGTCCCTT 58.587 41.667 2.00 0.00 41.59 3.95
2301 2517 5.024785 GAGACTAAAAAGTCCCTAGTCCCT 58.975 45.833 2.00 0.00 41.59 4.20
2302 2518 5.024785 AGAGACTAAAAAGTCCCTAGTCCC 58.975 45.833 2.00 0.00 41.59 4.46
2303 2519 7.118060 TCTAGAGACTAAAAAGTCCCTAGTCC 58.882 42.308 18.05 0.00 43.38 3.85
2304 2520 8.578448 TTCTAGAGACTAAAAAGTCCCTAGTC 57.422 38.462 18.05 4.54 43.38 2.59
2305 2521 8.805175 GTTTCTAGAGACTAAAAAGTCCCTAGT 58.195 37.037 18.05 0.00 43.38 2.57
2306 2522 8.804204 TGTTTCTAGAGACTAAAAAGTCCCTAG 58.196 37.037 14.01 14.53 43.90 3.02
2307 2523 8.716674 TGTTTCTAGAGACTAAAAAGTCCCTA 57.283 34.615 14.01 0.00 39.50 3.53
2308 2524 7.613551 TGTTTCTAGAGACTAAAAAGTCCCT 57.386 36.000 14.01 0.00 39.50 4.20
2309 2525 8.557864 GTTTGTTTCTAGAGACTAAAAAGTCCC 58.442 37.037 14.01 0.00 39.50 4.46
2310 2526 9.106070 TGTTTGTTTCTAGAGACTAAAAAGTCC 57.894 33.333 14.01 2.02 39.50 3.85
2312 2528 9.110502 CCTGTTTGTTTCTAGAGACTAAAAAGT 57.889 33.333 14.01 0.00 0.00 2.66
2313 2529 8.560374 CCCTGTTTGTTTCTAGAGACTAAAAAG 58.440 37.037 14.01 14.47 0.00 2.27
2314 2530 8.269317 TCCCTGTTTGTTTCTAGAGACTAAAAA 58.731 33.333 14.01 4.53 0.00 1.94
2315 2531 7.798071 TCCCTGTTTGTTTCTAGAGACTAAAA 58.202 34.615 14.01 7.47 0.00 1.52
2316 2532 7.369551 TCCCTGTTTGTTTCTAGAGACTAAA 57.630 36.000 14.01 9.88 0.00 1.85
2317 2533 6.014499 CCTCCCTGTTTGTTTCTAGAGACTAA 60.014 42.308 14.01 10.06 0.00 2.24
2318 2534 5.480772 CCTCCCTGTTTGTTTCTAGAGACTA 59.519 44.000 14.01 4.34 0.00 2.59
2319 2535 4.284746 CCTCCCTGTTTGTTTCTAGAGACT 59.715 45.833 14.01 0.00 0.00 3.24
2320 2536 4.563786 CCCTCCCTGTTTGTTTCTAGAGAC 60.564 50.000 6.47 6.47 0.00 3.36
2321 2537 3.583086 CCCTCCCTGTTTGTTTCTAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
2322 2538 3.583086 TCCCTCCCTGTTTGTTTCTAGAG 59.417 47.826 0.00 0.00 0.00 2.43
2323 2539 3.326880 GTCCCTCCCTGTTTGTTTCTAGA 59.673 47.826 0.00 0.00 0.00 2.43
2324 2540 3.328050 AGTCCCTCCCTGTTTGTTTCTAG 59.672 47.826 0.00 0.00 0.00 2.43
2325 2541 3.323775 AGTCCCTCCCTGTTTGTTTCTA 58.676 45.455 0.00 0.00 0.00 2.10
2326 2542 2.136026 AGTCCCTCCCTGTTTGTTTCT 58.864 47.619 0.00 0.00 0.00 2.52
2327 2543 2.658807 AGTCCCTCCCTGTTTGTTTC 57.341 50.000 0.00 0.00 0.00 2.78
2328 2544 3.398318 AAAGTCCCTCCCTGTTTGTTT 57.602 42.857 0.00 0.00 0.00 2.83
2329 2545 3.398318 AAAAGTCCCTCCCTGTTTGTT 57.602 42.857 0.00 0.00 0.00 2.83
2330 2546 3.398318 AAAAAGTCCCTCCCTGTTTGT 57.602 42.857 0.00 0.00 0.00 2.83
2331 2547 3.826729 CCTAAAAAGTCCCTCCCTGTTTG 59.173 47.826 0.00 0.00 0.00 2.93
2332 2548 3.181422 CCCTAAAAAGTCCCTCCCTGTTT 60.181 47.826 0.00 0.00 0.00 2.83
2333 2549 2.378886 CCCTAAAAAGTCCCTCCCTGTT 59.621 50.000 0.00 0.00 0.00 3.16
2334 2550 1.993301 CCCTAAAAAGTCCCTCCCTGT 59.007 52.381 0.00 0.00 0.00 4.00
2335 2551 2.026169 GTCCCTAAAAAGTCCCTCCCTG 60.026 54.545 0.00 0.00 0.00 4.45
2336 2552 2.157833 AGTCCCTAAAAAGTCCCTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
2337 2553 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
2338 2554 3.455177 CCTAGTCCCTAAAAAGTCCCTCC 59.545 52.174 0.00 0.00 0.00 4.30
2339 2555 3.455177 CCCTAGTCCCTAAAAAGTCCCTC 59.545 52.174 0.00 0.00 0.00 4.30
2340 2556 3.080153 TCCCTAGTCCCTAAAAAGTCCCT 59.920 47.826 0.00 0.00 0.00 4.20
2341 2557 3.199508 GTCCCTAGTCCCTAAAAAGTCCC 59.800 52.174 0.00 0.00 0.00 4.46
2342 2558 4.102598 AGTCCCTAGTCCCTAAAAAGTCC 58.897 47.826 0.00 0.00 0.00 3.85
2343 2559 5.758790 AAGTCCCTAGTCCCTAAAAAGTC 57.241 43.478 0.00 0.00 0.00 3.01
2344 2560 6.526056 AAAAGTCCCTAGTCCCTAAAAAGT 57.474 37.500 0.00 0.00 0.00 2.66
2345 2561 8.162085 ACTAAAAAGTCCCTAGTCCCTAAAAAG 58.838 37.037 0.00 0.00 0.00 2.27
2346 2562 8.049165 ACTAAAAAGTCCCTAGTCCCTAAAAA 57.951 34.615 0.00 0.00 0.00 1.94
2347 2563 7.637548 ACTAAAAAGTCCCTAGTCCCTAAAA 57.362 36.000 0.00 0.00 0.00 1.52
2348 2564 7.455891 CAACTAAAAAGTCCCTAGTCCCTAAA 58.544 38.462 0.00 0.00 0.00 1.85
2349 2565 6.013119 CCAACTAAAAAGTCCCTAGTCCCTAA 60.013 42.308 0.00 0.00 0.00 2.69
2350 2566 5.486419 CCAACTAAAAAGTCCCTAGTCCCTA 59.514 44.000 0.00 0.00 0.00 3.53
2351 2567 4.288887 CCAACTAAAAAGTCCCTAGTCCCT 59.711 45.833 0.00 0.00 0.00 4.20
2352 2568 4.567116 CCCAACTAAAAAGTCCCTAGTCCC 60.567 50.000 0.00 0.00 0.00 4.46
2353 2569 4.287845 TCCCAACTAAAAAGTCCCTAGTCC 59.712 45.833 0.00 0.00 0.00 3.85
2354 2570 5.012871 AGTCCCAACTAAAAAGTCCCTAGTC 59.987 44.000 0.00 0.00 32.59 2.59
2355 2571 4.912133 AGTCCCAACTAAAAAGTCCCTAGT 59.088 41.667 0.00 0.00 32.59 2.57
2356 2572 5.500546 AGTCCCAACTAAAAAGTCCCTAG 57.499 43.478 0.00 0.00 32.59 3.02
2357 2573 6.325352 TCTAGTCCCAACTAAAAAGTCCCTA 58.675 40.000 0.00 0.00 37.53 3.53
2358 2574 5.160386 TCTAGTCCCAACTAAAAAGTCCCT 58.840 41.667 0.00 0.00 37.53 4.20
2359 2575 5.494390 TCTAGTCCCAACTAAAAAGTCCC 57.506 43.478 0.00 0.00 37.53 4.46
2360 2576 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
2362 2578 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
2386 2602 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
2387 2603 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
2388 2604 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
2389 2605 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
2390 2606 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
2391 2607 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
2392 2608 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
2393 2609 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
2394 2610 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
2395 2611 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
2396 2612 4.657039 ACTTAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
2397 2613 3.458487 ACTTAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
2398 2614 3.813724 GACTTAGGTGGTGTTTGGTTCTC 59.186 47.826 0.00 0.00 0.00 2.87
2399 2615 3.201266 TGACTTAGGTGGTGTTTGGTTCT 59.799 43.478 0.00 0.00 0.00 3.01
2400 2616 3.314357 GTGACTTAGGTGGTGTTTGGTTC 59.686 47.826 0.00 0.00 0.00 3.62
2401 2617 3.284617 GTGACTTAGGTGGTGTTTGGTT 58.715 45.455 0.00 0.00 0.00 3.67
2402 2618 2.422377 GGTGACTTAGGTGGTGTTTGGT 60.422 50.000 0.00 0.00 0.00 3.67
2403 2619 2.158667 AGGTGACTTAGGTGGTGTTTGG 60.159 50.000 0.00 0.00 37.44 3.28
2404 2620 2.878406 CAGGTGACTTAGGTGGTGTTTG 59.122 50.000 0.00 0.00 40.21 2.93
2405 2621 2.775384 TCAGGTGACTTAGGTGGTGTTT 59.225 45.455 0.00 0.00 40.21 2.83
2406 2622 2.104281 GTCAGGTGACTTAGGTGGTGTT 59.896 50.000 2.72 0.00 41.65 3.32
2407 2623 1.692519 GTCAGGTGACTTAGGTGGTGT 59.307 52.381 2.72 0.00 41.65 4.16
2408 2624 2.457366 GTCAGGTGACTTAGGTGGTG 57.543 55.000 2.72 0.00 41.65 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.