Multiple sequence alignment - TraesCS1D01G177200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G177200
chr1D
100.000
2786
0
0
1
2786
252482223
252479438
0.000000e+00
5145
1
TraesCS1D01G177200
chr1A
91.250
2617
132
36
206
2786
323188276
323190831
0.000000e+00
3474
2
TraesCS1D01G177200
chr1A
85.590
229
6
6
15
220
323182065
323182289
6.040000e-52
215
3
TraesCS1D01G177200
chr1B
91.367
2583
121
35
224
2768
361011785
361014303
0.000000e+00
3441
4
TraesCS1D01G177200
chr1B
90.000
240
20
3
1
240
361009635
361009870
9.690000e-80
307
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G177200
chr1D
252479438
252482223
2785
True
5145
5145
100.0000
1
2786
1
chr1D.!!$R1
2785
1
TraesCS1D01G177200
chr1A
323188276
323190831
2555
False
3474
3474
91.2500
206
2786
1
chr1A.!!$F2
2580
2
TraesCS1D01G177200
chr1B
361009635
361014303
4668
False
1874
3441
90.6835
1
2768
2
chr1B.!!$F1
2767
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
833
2783
0.034574
ACCAACTCACAAGTGGCACA
60.035
50.0
21.41
0.0
35.36
4.57
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1794
3756
0.179056
CTATACAGGGGGCAACACGG
60.179
60.0
0.0
0.0
46.14
4.94
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
27
28
5.704888
AGAGCGTATAGTTGTATGCTGATC
58.295
41.667
7.25
0.00
44.66
2.92
28
29
5.241728
AGAGCGTATAGTTGTATGCTGATCA
59.758
40.000
7.25
0.00
44.66
2.92
29
30
5.842907
AGCGTATAGTTGTATGCTGATCAA
58.157
37.500
0.00
0.00
43.41
2.57
30
31
6.459066
AGCGTATAGTTGTATGCTGATCAAT
58.541
36.000
0.00
0.00
43.41
2.57
31
32
6.587990
AGCGTATAGTTGTATGCTGATCAATC
59.412
38.462
0.00
0.00
43.41
2.67
32
33
6.366061
GCGTATAGTTGTATGCTGATCAATCA
59.634
38.462
0.00
0.00
34.51
2.57
33
34
7.063898
GCGTATAGTTGTATGCTGATCAATCAT
59.936
37.037
12.88
12.88
36.02
2.45
34
35
8.378421
CGTATAGTTGTATGCTGATCAATCATG
58.622
37.037
16.27
0.00
36.02
3.07
35
36
7.683437
ATAGTTGTATGCTGATCAATCATGG
57.317
36.000
16.27
0.00
36.02
3.66
44
45
4.458397
CTGATCAATCATGGGTAGCACTT
58.542
43.478
0.00
0.00
36.02
3.16
46
47
6.000246
TGATCAATCATGGGTAGCACTTAA
58.000
37.500
0.00
0.00
0.00
1.85
56
57
5.132502
TGGGTAGCACTTAATCAATCATGG
58.867
41.667
0.00
0.00
0.00
3.66
75
76
5.904984
ATGGGTACATGCACTATCCTAAA
57.095
39.130
0.00
0.00
35.57
1.85
104
105
1.379576
GGCTGGCATCTTGGAAGCT
60.380
57.895
0.00
0.00
34.29
3.74
110
111
0.449388
GCATCTTGGAAGCTGGTTCG
59.551
55.000
12.87
0.68
35.80
3.95
154
155
0.900182
TCATCCGGACAGAGTGTGCT
60.900
55.000
6.12
0.00
36.50
4.40
165
166
2.234661
CAGAGTGTGCTGGTTCCATCTA
59.765
50.000
0.00
0.00
32.26
1.98
191
192
2.230750
GCGTAGAGGGTGTAGACTTGTT
59.769
50.000
0.00
0.00
0.00
2.83
203
204
6.531948
GGTGTAGACTTGTTAGATTAGTGCTG
59.468
42.308
0.00
0.00
0.00
4.41
249
2181
2.922740
ACGGAGTCTTGCTTTTGGTA
57.077
45.000
0.00
0.00
29.74
3.25
257
2189
2.548057
TCTTGCTTTTGGTAGTTGAGCG
59.452
45.455
0.00
0.00
36.17
5.03
259
2191
3.114668
TGCTTTTGGTAGTTGAGCGTA
57.885
42.857
0.00
0.00
36.17
4.42
287
2219
3.469739
TGTTCCCAACCTAAACTCGTTC
58.530
45.455
0.00
0.00
0.00
3.95
293
2225
3.818773
CCAACCTAAACTCGTTCCACAAT
59.181
43.478
0.00
0.00
0.00
2.71
313
2245
1.175983
CCTGGTTTTGGCCGCACTTA
61.176
55.000
0.00
0.00
0.00
2.24
403
2336
1.140312
AGAGTTGAAGGCCCAGACAA
58.860
50.000
0.00
0.00
0.00
3.18
404
2337
1.072965
AGAGTTGAAGGCCCAGACAAG
59.927
52.381
0.00
0.00
0.00
3.16
406
2339
0.823356
GTTGAAGGCCCAGACAAGCA
60.823
55.000
0.00
0.00
0.00
3.91
408
2341
1.676967
GAAGGCCCAGACAAGCAGG
60.677
63.158
0.00
0.00
0.00
4.85
409
2342
2.129555
GAAGGCCCAGACAAGCAGGA
62.130
60.000
0.00
0.00
0.00
3.86
412
2345
0.255890
GGCCCAGACAAGCAGGATAA
59.744
55.000
0.00
0.00
0.00
1.75
416
2349
2.420687
CCCAGACAAGCAGGATAACCTC
60.421
54.545
0.00
0.00
45.94
3.85
417
2350
2.503356
CCAGACAAGCAGGATAACCTCT
59.497
50.000
0.00
0.00
45.94
3.69
418
2351
3.054802
CCAGACAAGCAGGATAACCTCTT
60.055
47.826
0.00
0.00
45.94
2.85
419
2352
4.566488
CCAGACAAGCAGGATAACCTCTTT
60.566
45.833
0.00
0.00
45.94
2.52
420
2353
4.394300
CAGACAAGCAGGATAACCTCTTTG
59.606
45.833
9.33
9.33
45.94
2.77
421
2354
4.042187
AGACAAGCAGGATAACCTCTTTGT
59.958
41.667
14.13
14.13
45.94
2.83
425
2371
5.957771
AGCAGGATAACCTCTTTGTATGA
57.042
39.130
0.00
0.00
45.94
2.15
448
2395
1.639108
GGGGAAGGGTGTTAATCCAGT
59.361
52.381
0.00
0.00
33.48
4.00
461
2408
2.945080
ATCCAGTGATTCGATGCCAT
57.055
45.000
0.00
0.00
0.00
4.40
557
2504
7.812690
ATAAATAGTTCCCAATAAACGGGTC
57.187
36.000
0.00
0.00
44.81
4.46
596
2543
9.764363
ATCATGTAATACATTCGTGTACTTCAT
57.236
29.630
2.67
0.00
36.53
2.57
597
2544
9.244799
TCATGTAATACATTCGTGTACTTCATC
57.755
33.333
2.67
0.00
36.53
2.92
598
2545
9.030301
CATGTAATACATTCGTGTACTTCATCA
57.970
33.333
2.67
0.00
36.53
3.07
599
2546
9.764363
ATGTAATACATTCGTGTACTTCATCAT
57.236
29.630
0.00
0.00
34.67
2.45
600
2547
9.244799
TGTAATACATTCGTGTACTTCATCATC
57.755
33.333
0.00
0.00
0.00
2.92
601
2548
9.244799
GTAATACATTCGTGTACTTCATCATCA
57.755
33.333
0.00
0.00
0.00
3.07
628
2575
3.133003
ACCAAGTAGCTTGCTCATCGTAT
59.867
43.478
0.00
0.00
39.85
3.06
660
2608
7.578169
GTTAGTTAACGAGTTGCTGATAAGT
57.422
36.000
0.00
0.00
0.00
2.24
661
2609
7.445836
GTTAGTTAACGAGTTGCTGATAAGTG
58.554
38.462
0.00
0.00
0.00
3.16
662
2610
5.539048
AGTTAACGAGTTGCTGATAAGTGT
58.461
37.500
0.00
0.00
0.00
3.55
663
2611
5.989777
AGTTAACGAGTTGCTGATAAGTGTT
59.010
36.000
0.00
0.00
0.00
3.32
664
2612
7.149973
AGTTAACGAGTTGCTGATAAGTGTTA
58.850
34.615
0.00
0.00
0.00
2.41
665
2613
7.654520
AGTTAACGAGTTGCTGATAAGTGTTAA
59.345
33.333
0.00
0.00
0.00
2.01
666
2614
6.854496
AACGAGTTGCTGATAAGTGTTAAA
57.146
33.333
0.00
0.00
0.00
1.52
668
2616
7.254227
ACGAGTTGCTGATAAGTGTTAAAAA
57.746
32.000
0.00
0.00
0.00
1.94
690
2638
5.358298
AAAACGAGTTGCTGATAAGAACC
57.642
39.130
0.00
0.00
0.00
3.62
691
2639
2.973945
ACGAGTTGCTGATAAGAACCC
58.026
47.619
0.00
0.00
0.00
4.11
692
2640
2.301870
ACGAGTTGCTGATAAGAACCCA
59.698
45.455
0.00
0.00
0.00
4.51
693
2641
3.055094
ACGAGTTGCTGATAAGAACCCAT
60.055
43.478
0.00
0.00
0.00
4.00
694
2642
4.161565
ACGAGTTGCTGATAAGAACCCATA
59.838
41.667
0.00
0.00
0.00
2.74
695
2643
5.116180
CGAGTTGCTGATAAGAACCCATAA
58.884
41.667
0.00
0.00
0.00
1.90
696
2644
5.760253
CGAGTTGCTGATAAGAACCCATAAT
59.240
40.000
0.00
0.00
0.00
1.28
720
2669
4.579454
TTATAAGCTCTAACGCACGGAT
57.421
40.909
0.00
0.00
0.00
4.18
734
2683
0.591170
ACGGATGCGAGTTGTTTTGG
59.409
50.000
15.49
0.00
0.00
3.28
833
2783
0.034574
ACCAACTCACAAGTGGCACA
60.035
50.000
21.41
0.00
35.36
4.57
1020
2978
3.003763
AGACCAGCGGGGAAGACC
61.004
66.667
8.08
0.00
41.15
3.85
1080
3038
2.750237
GAACACCCGCACCCCATC
60.750
66.667
0.00
0.00
0.00
3.51
1081
3039
3.561120
GAACACCCGCACCCCATCA
62.561
63.158
0.00
0.00
0.00
3.07
1082
3040
2.837031
GAACACCCGCACCCCATCAT
62.837
60.000
0.00
0.00
0.00
2.45
1083
3041
2.829914
CACCCGCACCCCATCATG
60.830
66.667
0.00
0.00
0.00
3.07
1108
3070
3.647649
CTGGACGACAGCATCCGCA
62.648
63.158
0.00
0.00
40.97
5.69
1158
3120
2.990479
GGTCAGTCCTCCGGCATT
59.010
61.111
0.00
0.00
0.00
3.56
1278
3240
2.275318
CTCGAAAGGATCCTTGTGCTC
58.725
52.381
27.71
19.03
36.26
4.26
1306
3268
0.806102
CTACGGCACATTCCTGTCGG
60.806
60.000
0.00
0.00
31.62
4.79
1389
3351
2.587194
ATGGTCGCTGCATCGCTC
60.587
61.111
4.79
0.92
0.00
5.03
1436
3398
4.760047
GTGCCGCCTCGTCACCAT
62.760
66.667
0.00
0.00
0.00
3.55
1543
3505
0.247460
CACTGTGGAAGCATCGGAGA
59.753
55.000
0.00
0.00
45.75
3.71
1791
3753
2.170817
CCTTACTCCCTTCTAACCCTGC
59.829
54.545
0.00
0.00
0.00
4.85
1792
3754
2.634639
TACTCCCTTCTAACCCTGCA
57.365
50.000
0.00
0.00
0.00
4.41
1793
3755
1.280457
ACTCCCTTCTAACCCTGCAG
58.720
55.000
6.78
6.78
0.00
4.41
1794
3756
0.107459
CTCCCTTCTAACCCTGCAGC
60.107
60.000
8.66
0.00
0.00
5.25
1795
3757
1.077429
CCCTTCTAACCCTGCAGCC
60.077
63.158
8.66
0.00
0.00
4.85
1796
3758
1.450312
CCTTCTAACCCTGCAGCCG
60.450
63.158
8.66
2.46
0.00
5.52
1797
3759
1.296715
CTTCTAACCCTGCAGCCGT
59.703
57.895
8.66
3.20
0.00
5.68
1798
3760
1.003839
TTCTAACCCTGCAGCCGTG
60.004
57.895
8.66
0.00
0.00
4.94
1799
3761
1.764571
TTCTAACCCTGCAGCCGTGT
61.765
55.000
8.66
0.00
0.00
4.49
1800
3762
1.302511
CTAACCCTGCAGCCGTGTT
60.303
57.895
8.66
10.80
0.00
3.32
1801
3763
1.577328
CTAACCCTGCAGCCGTGTTG
61.577
60.000
8.66
0.00
0.00
3.33
1845
3809
9.018582
CAAGATTTAGAAGAGGAAACAGGAAAT
57.981
33.333
0.00
0.00
0.00
2.17
1853
3817
9.268282
AGAAGAGGAAACAGGAAATATGTAGTA
57.732
33.333
0.00
0.00
0.00
1.82
1861
3825
7.366847
ACAGGAAATATGTAGTAGCAGTGAT
57.633
36.000
0.00
0.00
0.00
3.06
1879
3843
6.584954
CAGTGATGAAAGTAGAAGAAACGTG
58.415
40.000
0.00
0.00
0.00
4.49
1898
3862
4.166523
CGTGATATAGGATAACAGTGGCG
58.833
47.826
0.00
0.00
0.00
5.69
1920
3884
5.061808
GCGTACTGTATGTAGTTTCAGTTGG
59.938
44.000
8.69
0.00
40.77
3.77
1921
3885
6.384224
CGTACTGTATGTAGTTTCAGTTGGA
58.616
40.000
0.00
0.00
40.77
3.53
1932
3896
5.848406
AGTTTCAGTTGGACAGACTTCTAG
58.152
41.667
0.00
0.00
0.00
2.43
1952
3930
1.269517
GGTTTTTGCACAGAATCGCCA
60.270
47.619
0.00
0.00
0.00
5.69
1957
3935
2.109126
GCACAGAATCGCCACCCTC
61.109
63.158
0.00
0.00
0.00
4.30
1970
3948
2.689983
GCCACCCTCCATGTCAAATTAG
59.310
50.000
0.00
0.00
0.00
1.73
1981
3959
3.495331
TGTCAAATTAGCCTTGAGCCAA
58.505
40.909
0.00
0.00
45.47
4.52
1987
3965
4.525912
ATTAGCCTTGAGCCAACAAAAG
57.474
40.909
0.00
0.00
45.47
2.27
1988
3966
2.071778
AGCCTTGAGCCAACAAAAGA
57.928
45.000
0.00
0.00
45.47
2.52
2059
4038
5.933617
TCCTGTCAGCTTAAATGCAGATAT
58.066
37.500
0.00
0.00
31.49
1.63
2060
4039
6.359804
TCCTGTCAGCTTAAATGCAGATATT
58.640
36.000
0.00
0.00
31.49
1.28
2119
4098
0.471617
AGCAGTAATAGCCTGGCCAG
59.528
55.000
26.87
26.87
0.00
4.85
2121
4100
1.542108
GCAGTAATAGCCTGGCCAGAG
60.542
57.143
34.91
23.71
0.00
3.35
2126
4105
0.621571
ATAGCCTGGCCAGAGTCCAA
60.622
55.000
34.91
12.98
32.41
3.53
2452
4435
5.010112
GGCCCTTCATATCTAAAGCTTTTCC
59.990
44.000
18.47
0.00
0.00
3.13
2559
4542
6.734502
AGCTAGAAGGATAAGGGAAAGTAC
57.265
41.667
0.00
0.00
0.00
2.73
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
3
4
6.430000
TGATCAGCATACAACTATACGCTCTA
59.570
38.462
0.00
0.00
0.00
2.43
9
10
8.663025
CCATGATTGATCAGCATACAACTATAC
58.337
37.037
11.41
0.00
40.64
1.47
17
18
4.394300
GCTACCCATGATTGATCAGCATAC
59.606
45.833
11.41
0.00
40.64
2.39
24
25
6.712095
TGATTAAGTGCTACCCATGATTGATC
59.288
38.462
0.00
0.00
0.00
2.92
27
28
6.698008
TTGATTAAGTGCTACCCATGATTG
57.302
37.500
0.00
0.00
0.00
2.67
28
29
7.062322
TGATTGATTAAGTGCTACCCATGATT
58.938
34.615
0.00
0.00
0.00
2.57
29
30
6.604171
TGATTGATTAAGTGCTACCCATGAT
58.396
36.000
0.00
0.00
0.00
2.45
30
31
6.000246
TGATTGATTAAGTGCTACCCATGA
58.000
37.500
0.00
0.00
0.00
3.07
31
32
6.294342
CCATGATTGATTAAGTGCTACCCATG
60.294
42.308
0.00
0.00
0.00
3.66
32
33
5.771666
CCATGATTGATTAAGTGCTACCCAT
59.228
40.000
0.00
0.00
0.00
4.00
33
34
5.132502
CCATGATTGATTAAGTGCTACCCA
58.867
41.667
0.00
0.00
0.00
4.51
34
35
4.520492
CCCATGATTGATTAAGTGCTACCC
59.480
45.833
0.00
0.00
0.00
3.69
35
36
5.133221
ACCCATGATTGATTAAGTGCTACC
58.867
41.667
0.00
0.00
0.00
3.18
56
57
5.530915
TGCATTTTAGGATAGTGCATGTACC
59.469
40.000
10.59
0.00
40.51
3.34
75
76
1.324740
ATGCCAGCCGTTGATGCATT
61.325
50.000
0.00
0.00
0.00
3.56
84
85
1.377725
CTTCCAAGATGCCAGCCGT
60.378
57.895
0.00
0.00
0.00
5.68
110
111
2.828128
GCTTGATACAGCGGCAGCC
61.828
63.158
4.82
0.00
46.67
4.85
165
166
3.155501
GTCTACACCCTCTACGCCATAT
58.844
50.000
0.00
0.00
0.00
1.78
174
175
7.122948
CACTAATCTAACAAGTCTACACCCTCT
59.877
40.741
0.00
0.00
0.00
3.69
175
176
7.259161
CACTAATCTAACAAGTCTACACCCTC
58.741
42.308
0.00
0.00
0.00
4.30
191
192
4.929819
TGCGTAATCCAGCACTAATCTA
57.070
40.909
0.00
0.00
38.59
1.98
203
204
0.096454
GCGAACCACTTGCGTAATCC
59.904
55.000
0.00
0.00
0.00
3.01
249
2181
4.634443
GGGAACAATACAATACGCTCAACT
59.366
41.667
0.00
0.00
0.00
3.16
287
2219
0.321346
GGCCAAAACCAGGATTGTGG
59.679
55.000
0.00
0.00
44.01
4.17
293
2225
2.909965
GTGCGGCCAAAACCAGGA
60.910
61.111
2.24
0.00
0.00
3.86
313
2245
0.322546
GGGGCCTCTGTTTTCACGAT
60.323
55.000
0.84
0.00
0.00
3.73
403
2336
5.957771
TCATACAAAGAGGTTATCCTGCT
57.042
39.130
0.00
0.00
45.24
4.24
404
2337
5.406780
CGATCATACAAAGAGGTTATCCTGC
59.593
44.000
0.00
0.00
45.24
4.85
408
2341
5.011738
TCCCCGATCATACAAAGAGGTTATC
59.988
44.000
0.00
0.00
0.00
1.75
409
2342
4.905456
TCCCCGATCATACAAAGAGGTTAT
59.095
41.667
0.00
0.00
0.00
1.89
412
2345
2.759355
TCCCCGATCATACAAAGAGGT
58.241
47.619
0.00
0.00
0.00
3.85
415
2348
2.438021
CCCTTCCCCGATCATACAAAGA
59.562
50.000
0.00
0.00
0.00
2.52
416
2349
2.172717
ACCCTTCCCCGATCATACAAAG
59.827
50.000
0.00
0.00
0.00
2.77
417
2350
2.092646
CACCCTTCCCCGATCATACAAA
60.093
50.000
0.00
0.00
0.00
2.83
418
2351
1.488812
CACCCTTCCCCGATCATACAA
59.511
52.381
0.00
0.00
0.00
2.41
419
2352
1.128200
CACCCTTCCCCGATCATACA
58.872
55.000
0.00
0.00
0.00
2.29
420
2353
1.129058
ACACCCTTCCCCGATCATAC
58.871
55.000
0.00
0.00
0.00
2.39
421
2354
1.887797
AACACCCTTCCCCGATCATA
58.112
50.000
0.00
0.00
0.00
2.15
425
2371
1.493446
GGATTAACACCCTTCCCCGAT
59.507
52.381
0.00
0.00
0.00
4.18
448
2395
3.740832
GTCAATCGTATGGCATCGAATCA
59.259
43.478
20.17
2.53
39.45
2.57
461
2408
0.880441
TTCGTGTCCCGTCAATCGTA
59.120
50.000
0.00
0.00
37.94
3.43
576
2523
9.981114
ATGATGATGAAGTACACGAATGTATTA
57.019
29.630
0.00
0.00
43.21
0.98
577
2524
8.768019
CATGATGATGAAGTACACGAATGTATT
58.232
33.333
0.00
0.00
43.21
1.89
578
2525
7.386025
CCATGATGATGAAGTACACGAATGTAT
59.614
37.037
0.00
0.00
43.21
2.29
596
2543
4.769688
CAAGCTACTTGGTACCATGATGA
58.230
43.478
29.21
15.14
37.77
2.92
597
2544
3.313526
GCAAGCTACTTGGTACCATGATG
59.686
47.826
29.21
21.23
41.31
3.07
598
2545
3.545703
GCAAGCTACTTGGTACCATGAT
58.454
45.455
29.21
17.47
41.31
2.45
599
2546
2.985896
GCAAGCTACTTGGTACCATGA
58.014
47.619
29.21
10.26
41.31
3.07
668
2616
4.215613
GGGTTCTTATCAGCAACTCGTTTT
59.784
41.667
0.00
0.00
0.00
2.43
670
2618
3.244422
TGGGTTCTTATCAGCAACTCGTT
60.244
43.478
0.00
0.00
0.00
3.85
671
2619
2.301870
TGGGTTCTTATCAGCAACTCGT
59.698
45.455
0.00
0.00
0.00
4.18
672
2620
2.972625
TGGGTTCTTATCAGCAACTCG
58.027
47.619
0.00
0.00
0.00
4.18
673
2621
7.573968
AATTATGGGTTCTTATCAGCAACTC
57.426
36.000
0.00
0.00
0.00
3.01
674
2622
7.961326
AAATTATGGGTTCTTATCAGCAACT
57.039
32.000
0.00
0.00
0.00
3.16
688
2636
8.565416
GCGTTAGAGCTTATAAAAATTATGGGT
58.435
33.333
0.00
0.00
0.00
4.51
689
2637
8.564574
TGCGTTAGAGCTTATAAAAATTATGGG
58.435
33.333
0.00
0.00
38.13
4.00
690
2638
9.382244
GTGCGTTAGAGCTTATAAAAATTATGG
57.618
33.333
0.00
0.00
38.13
2.74
691
2639
9.092322
CGTGCGTTAGAGCTTATAAAAATTATG
57.908
33.333
0.00
0.00
38.13
1.90
692
2640
8.280497
CCGTGCGTTAGAGCTTATAAAAATTAT
58.720
33.333
0.00
0.00
38.13
1.28
693
2641
7.492020
TCCGTGCGTTAGAGCTTATAAAAATTA
59.508
33.333
0.00
0.00
38.13
1.40
694
2642
6.314400
TCCGTGCGTTAGAGCTTATAAAAATT
59.686
34.615
0.00
0.00
38.13
1.82
695
2643
5.813672
TCCGTGCGTTAGAGCTTATAAAAAT
59.186
36.000
0.00
0.00
38.13
1.82
696
2644
5.170021
TCCGTGCGTTAGAGCTTATAAAAA
58.830
37.500
0.00
0.00
38.13
1.94
720
2669
3.701241
GTTGAATCCAAAACAACTCGCA
58.299
40.909
0.00
0.00
40.13
5.10
734
2683
5.873179
TGGACTTTTGGATACGTTGAATC
57.127
39.130
0.00
0.00
42.51
2.52
782
2732
1.396301
CGAGCTGCTGTTTTCTGGATC
59.604
52.381
7.01
0.00
0.00
3.36
833
2783
7.457060
GCTCGAAGAAAATACGAAAGAAATCT
58.543
34.615
0.00
0.00
34.09
2.40
1078
3036
2.124570
GTCCAGGTGCGCCATGAT
60.125
61.111
20.59
0.00
37.19
2.45
1080
3038
4.758251
TCGTCCAGGTGCGCCATG
62.758
66.667
20.59
13.39
37.19
3.66
1081
3039
4.760047
GTCGTCCAGGTGCGCCAT
62.760
66.667
20.59
0.08
37.19
4.40
1108
3070
2.573869
CGACCATGACCTGAGCGT
59.426
61.111
0.00
0.00
0.00
5.07
1267
3229
1.446792
CGTCAGCGAGCACAAGGAT
60.447
57.895
0.00
0.00
41.33
3.24
1389
3351
2.431942
GTCCGCCTGTGTACACGG
60.432
66.667
25.27
25.27
46.97
4.94
1394
3356
0.888619
CTTCTCTGTCCGCCTGTGTA
59.111
55.000
0.00
0.00
0.00
2.90
1518
3480
3.357079
GCTTCCACAGTGGCCACG
61.357
66.667
29.68
24.87
37.47
4.94
1520
3482
1.303561
GATGCTTCCACAGTGGCCA
60.304
57.895
15.64
0.00
37.47
5.36
1793
3755
2.260088
TATACAGGGGGCAACACGGC
62.260
60.000
0.00
0.00
46.14
5.68
1794
3756
0.179056
CTATACAGGGGGCAACACGG
60.179
60.000
0.00
0.00
46.14
4.94
1795
3757
0.828022
TCTATACAGGGGGCAACACG
59.172
55.000
0.00
0.00
46.14
4.49
1796
3758
1.557832
TGTCTATACAGGGGGCAACAC
59.442
52.381
0.00
0.00
42.03
3.32
1797
3759
1.959710
TGTCTATACAGGGGGCAACA
58.040
50.000
0.00
0.00
39.74
3.33
1808
3770
9.959749
CCTCTTCTAAATCTTGACTGTCTATAC
57.040
37.037
9.51
0.00
0.00
1.47
1845
3809
8.747538
TCTACTTTCATCACTGCTACTACATA
57.252
34.615
0.00
0.00
0.00
2.29
1853
3817
5.406780
CGTTTCTTCTACTTTCATCACTGCT
59.593
40.000
0.00
0.00
0.00
4.24
1861
3825
8.963725
TCCTATATCACGTTTCTTCTACTTTCA
58.036
33.333
0.00
0.00
0.00
2.69
1879
3843
6.512342
AGTACGCCACTGTTATCCTATATC
57.488
41.667
0.00
0.00
35.62
1.63
1898
3862
7.149973
TGTCCAACTGAAACTACATACAGTAC
58.850
38.462
0.00
0.00
41.73
2.73
1920
3884
4.574828
TGTGCAAAAACCTAGAAGTCTGTC
59.425
41.667
0.00
0.00
0.00
3.51
1921
3885
4.523083
TGTGCAAAAACCTAGAAGTCTGT
58.477
39.130
0.00
0.00
0.00
3.41
1932
3896
1.269517
TGGCGATTCTGTGCAAAAACC
60.270
47.619
0.00
0.00
0.00
3.27
1952
3930
2.582636
AGGCTAATTTGACATGGAGGGT
59.417
45.455
0.00
0.00
0.00
4.34
1957
3935
3.181483
GGCTCAAGGCTAATTTGACATGG
60.181
47.826
0.00
0.00
41.46
3.66
1970
3948
4.082026
ACATATCTTTTGTTGGCTCAAGGC
60.082
41.667
0.00
0.00
41.50
4.35
2005
3984
4.353777
ACCAGCCTCTAACACTATTCTCA
58.646
43.478
0.00
0.00
0.00
3.27
2013
3992
4.327680
AGAATTCAACCAGCCTCTAACAC
58.672
43.478
8.44
0.00
0.00
3.32
2073
4052
1.275666
AATGTCGGGGTGTGAGATCA
58.724
50.000
0.00
0.00
0.00
2.92
2076
4055
2.614481
GCTTTAATGTCGGGGTGTGAGA
60.614
50.000
0.00
0.00
0.00
3.27
2077
4056
1.737793
GCTTTAATGTCGGGGTGTGAG
59.262
52.381
0.00
0.00
0.00
3.51
2452
4435
3.865745
CAGGTTTATGCTGTAACTCCGAG
59.134
47.826
0.00
0.00
0.00
4.63
2559
4542
3.354089
ACACGAAAAAGTCCTTGCATG
57.646
42.857
0.00
0.00
0.00
4.06
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.