AutoCloner

Multiple sequence alignment - TraesCS1D01G175800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G175800	chr1D	100.000	3578	0	0	1	3578	250140106	250136529	0.000000e+00	6608.0
1	TraesCS1D01G175800	chr1D	80.287	1461	238	31	1090	2545	249755537	249754122	0.000000e+00	1057.0
2	TraesCS1D01G175800	chr1D	80.287	1461	233	32	1096	2548	250070706	250069293	0.000000e+00	1051.0
3	TraesCS1D01G175800	chr1D	87.358	704	78	4	2029	2732	250077543	250076851	0.000000e+00	797.0
4	TraesCS1D01G175800	chr1D	79.029	1030	182	23	1537	2550	442798588	442799599	0.000000e+00	675.0
5	TraesCS1D01G175800	chr1B	95.504	1935	62	9	809	2732	364422851	364424771	0.000000e+00	3068.0
6	TraesCS1D01G175800	chr1B	93.522	849	48	7	2733	3577	625777241	625776396	0.000000e+00	1256.0
7	TraesCS1D01G175800	chr1B	80.055	1459	234	33	1096	2545	364505001	364506411	0.000000e+00	1029.0
8	TraesCS1D01G175800	chr1B	87.121	528	38	14	1	521	364420294	364420798	4.010000e-159	571.0
9	TraesCS1D01G175800	chr1B	79.795	683	104	23	1090	1763	364811296	364811953	1.950000e-127	466.0
10	TraesCS1D01G175800	chr1B	95.545	202	3	2	551	746	364422326	364422527	5.760000e-83	318.0
11	TraesCS1D01G175800	chr1B	100.000	31	0	0	532	562	364420831	364420861	1.390000e-04	58.4
12	TraesCS1D01G175800	chr1A	94.208	1830	68	11	915	2732	320156160	320154357	0.000000e+00	2758.0
13	TraesCS1D01G175800	chr1A	79.932	1460	240	28	1096	2548	319889304	319887891	0.000000e+00	1024.0
14	TraesCS1D01G175800	chr1A	86.648	704	83	3	2029	2732	320150034	320149342	0.000000e+00	769.0
15	TraesCS1D01G175800	chr1A	92.023	514	26	9	1	505	320223173	320222666	0.000000e+00	708.0
16	TraesCS1D01G175800	chr1A	93.050	259	12	3	592	850	320156428	320156176	1.210000e-99	374.0
17	TraesCS1D01G175800	chrUn	83.624	1490	196	34	1100	2571	28754124	28752665	0.000000e+00	1356.0
18	TraesCS1D01G175800	chr2D	94.836	852	38	6	2731	3577	64176105	64175255	0.000000e+00	1325.0
19	TraesCS1D01G175800	chr7D	94.049	857	44	7	2723	3577	428706424	428707275	0.000000e+00	1293.0
20	TraesCS1D01G175800	chr7B	93.801	855	47	5	2725	3577	498872759	498873609	0.000000e+00	1280.0
21	TraesCS1D01G175800	chr6D	93.560	854	46	7	2727	3577	37261083	37260236	0.000000e+00	1264.0
22	TraesCS1D01G175800	chr3B	93.349	857	50	7	2723	3577	181331702	181332553	0.000000e+00	1260.0
23	TraesCS1D01G175800	chr2B	93.522	849	49	6	2733	3577	784205251	784204405	0.000000e+00	1258.0
24	TraesCS1D01G175800	chr2B	93.522	849	49	6	2733	3577	784215871	784215025	0.000000e+00	1258.0
25	TraesCS1D01G175800	chr5D	93.048	863	54	6	2720	3578	513558836	513559696	0.000000e+00	1256.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G175800	chr1D	250136529	250140106	3577	True	6608.00	6608	100.0000	1	3578	1	chr1D.!!$R4	3577
1	TraesCS1D01G175800	chr1D	249754122	249755537	1415	True	1057.00	1057	80.2870	1090	2545	1	chr1D.!!$R1	1455
2	TraesCS1D01G175800	chr1D	250069293	250070706	1413	True	1051.00	1051	80.2870	1096	2548	1	chr1D.!!$R2	1452
3	TraesCS1D01G175800	chr1D	250076851	250077543	692	True	797.00	797	87.3580	2029	2732	1	chr1D.!!$R3	703
4	TraesCS1D01G175800	chr1D	442798588	442799599	1011	False	675.00	675	79.0290	1537	2550	1	chr1D.!!$F1	1013
5	TraesCS1D01G175800	chr1B	625776396	625777241	845	True	1256.00	1256	93.5220	2733	3577	1	chr1B.!!$R1	844
6	TraesCS1D01G175800	chr1B	364505001	364506411	1410	False	1029.00	1029	80.0550	1096	2545	1	chr1B.!!$F1	1449
7	TraesCS1D01G175800	chr1B	364420294	364424771	4477	False	1003.85	3068	94.5425	1	2732	4	chr1B.!!$F3	2731
8	TraesCS1D01G175800	chr1B	364811296	364811953	657	False	466.00	466	79.7950	1090	1763	1	chr1B.!!$F2	673
9	TraesCS1D01G175800	chr1A	320154357	320156428	2071	True	1566.00	2758	93.6290	592	2732	2	chr1A.!!$R4	2140
10	TraesCS1D01G175800	chr1A	319887891	319889304	1413	True	1024.00	1024	79.9320	1096	2548	1	chr1A.!!$R1	1452
11	TraesCS1D01G175800	chr1A	320149342	320150034	692	True	769.00	769	86.6480	2029	2732	1	chr1A.!!$R2	703
12	TraesCS1D01G175800	chr1A	320222666	320223173	507	True	708.00	708	92.0230	1	505	1	chr1A.!!$R3	504
13	TraesCS1D01G175800	chrUn	28752665	28754124	1459	True	1356.00	1356	83.6240	1100	2571	1	chrUn.!!$R1	1471
14	TraesCS1D01G175800	chr2D	64175255	64176105	850	True	1325.00	1325	94.8360	2731	3577	1	chr2D.!!$R1	846
15	TraesCS1D01G175800	chr7D	428706424	428707275	851	False	1293.00	1293	94.0490	2723	3577	1	chr7D.!!$F1	854
16	TraesCS1D01G175800	chr7B	498872759	498873609	850	False	1280.00	1280	93.8010	2725	3577	1	chr7B.!!$F1	852
17	TraesCS1D01G175800	chr6D	37260236	37261083	847	True	1264.00	1264	93.5600	2727	3577	1	chr6D.!!$R1	850
18	TraesCS1D01G175800	chr3B	181331702	181332553	851	False	1260.00	1260	93.3490	2723	3577	1	chr3B.!!$F1	854
19	TraesCS1D01G175800	chr2B	784204405	784205251	846	True	1258.00	1258	93.5220	2733	3577	1	chr2B.!!$R1	844
20	TraesCS1D01G175800	chr2B	784215025	784215871	846	True	1258.00	1258	93.5220	2733	3577	1	chr2B.!!$R2	844
21	TraesCS1D01G175800	chr5D	513558836	513559696	860	False	1256.00	1256	93.0480	2720	3578	1	chr5D.!!$F1	858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
886	2675	0.249398	AACCAGCAGTATCCGTCACC	59.751	55.0	0.0	0.0	0.0	4.02	F
887	2676	0.902984	ACCAGCAGTATCCGTCACCA	60.903	55.0	0.0	0.0	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2083	3915	0.033991	TCCTCCTCGGAGACCTCTTG	60.034	60.0	14.45	0.0	44.53	3.02	R
2818	4654	0.905337	AGAAGGTGGGGTCGAAGGAG	60.905	60.0	0.00	0.0	0.00	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
95	96	2.496070	TCACCGAGGTTAGGTCTTGATG	59.504	50.000	0.00	0.00	40.59	3.07
97	98	1.482593	CCGAGGTTAGGTCTTGATGCT	59.517	52.381	0.00	0.00	0.00	3.79
98	99	2.093447	CCGAGGTTAGGTCTTGATGCTT	60.093	50.000	0.00	0.00	0.00	3.91
107	108	4.642429	AGGTCTTGATGCTTTACGTTTCT	58.358	39.130	0.00	0.00	0.00	2.52
139	143	6.767524	TGTTCTCTGTTGGTGTAAAACATT	57.232	33.333	0.00	0.00	36.95	2.71
140	144	6.791303	TGTTCTCTGTTGGTGTAAAACATTC	58.209	36.000	0.00	0.00	36.95	2.67
191	195	0.671781	ACCGCTCTTCTGACATGTGC	60.672	55.000	1.15	0.00	0.00	4.57
244	251	2.887568	CCACATCTCAGCGGCGAC	60.888	66.667	12.98	1.23	0.00	5.19
283	299	1.181786	CAGTTGTGTTGTGTGGGGTT	58.818	50.000	0.00	0.00	0.00	4.11
284	300	1.135141	CAGTTGTGTTGTGTGGGGTTG	60.135	52.381	0.00	0.00	0.00	3.77
285	301	0.892063	GTTGTGTTGTGTGGGGTTGT	59.108	50.000	0.00	0.00	0.00	3.32
286	302	2.093106	GTTGTGTTGTGTGGGGTTGTA	58.907	47.619	0.00	0.00	0.00	2.41
287	303	2.691011	GTTGTGTTGTGTGGGGTTGTAT	59.309	45.455	0.00	0.00	0.00	2.29
288	304	2.302260	TGTGTTGTGTGGGGTTGTATG	58.698	47.619	0.00	0.00	0.00	2.39
289	305	2.303175	GTGTTGTGTGGGGTTGTATGT	58.697	47.619	0.00	0.00	0.00	2.29
290	306	2.034053	GTGTTGTGTGGGGTTGTATGTG	59.966	50.000	0.00	0.00	0.00	3.21
291	307	2.303175	GTTGTGTGGGGTTGTATGTGT	58.697	47.619	0.00	0.00	0.00	3.72
315	331	4.863131	CGTAGGTTTGATAGTCCTTGTGTC	59.137	45.833	0.00	0.00	33.34	3.67
316	332	5.336531	CGTAGGTTTGATAGTCCTTGTGTCT	60.337	44.000	0.00	0.00	33.34	3.41
465	486	8.502387	GCAATGTTAGAGATGAAAGATGTATCC	58.498	37.037	0.00	0.00	0.00	2.59
474	495	7.009550	AGATGAAAGATGTATCCTAGAGAGCA	58.990	38.462	0.00	0.00	0.00	4.26
483	504	5.877012	TGTATCCTAGAGAGCAAAAGCAAAG	59.123	40.000	0.00	0.00	0.00	2.77
506	528	6.240894	AGTCTTTGAGGTATCTTGCATTTCA	58.759	36.000	0.00	0.00	0.00	2.69
512	534	8.750515	TTGAGGTATCTTGCATTTCATATGAA	57.249	30.769	14.23	14.23	0.00	2.57
513	535	8.158169	TGAGGTATCTTGCATTTCATATGAAC	57.842	34.615	17.76	7.54	33.13	3.18
515	537	7.934457	AGGTATCTTGCATTTCATATGAACAC	58.066	34.615	17.76	10.47	33.13	3.32
516	538	7.776969	AGGTATCTTGCATTTCATATGAACACT	59.223	33.333	17.76	3.35	33.13	3.55
517	539	8.408601	GGTATCTTGCATTTCATATGAACACTT	58.591	33.333	17.76	1.09	33.13	3.16
518	540	9.229784	GTATCTTGCATTTCATATGAACACTTG	57.770	33.333	17.76	13.25	33.13	3.16
528	574	0.461870	TGAACACTTGTGCTCGTGCT	60.462	50.000	11.19	0.00	40.48	4.40
530	576	1.439353	AACACTTGTGCTCGTGCTGG	61.439	55.000	11.19	1.24	40.48	4.85
750	2278	6.166984	ACACTACGGCTACTCTACTATACA	57.833	41.667	0.00	0.00	0.00	2.29
771	2421	4.231890	ACAATTATCCCTCCCCTTGCTTTA	59.768	41.667	0.00	0.00	0.00	1.85
772	2422	4.731313	ATTATCCCTCCCCTTGCTTTAG	57.269	45.455	0.00	0.00	0.00	1.85
780	2430	1.959282	CCCCTTGCTTTAGGATGCATC	59.041	52.381	18.81	18.81	39.07	3.91
792	2442	3.740128	ATGCATCGGGTCGCTCACC	62.740	63.158	0.00	0.00	45.97	4.02
858	2647	5.107913	CGTGTTGTTATCGTCGTTTCCTTTA	60.108	40.000	0.00	0.00	0.00	1.85
859	2648	6.400303	CGTGTTGTTATCGTCGTTTCCTTTAT	60.400	38.462	0.00	0.00	0.00	1.40
862	2651	5.722263	TGTTATCGTCGTTTCCTTTATCCA	58.278	37.500	0.00	0.00	0.00	3.41
885	2674	1.359848	CAACCAGCAGTATCCGTCAC	58.640	55.000	0.00	0.00	0.00	3.67
886	2675	0.249398	AACCAGCAGTATCCGTCACC	59.751	55.000	0.00	0.00	0.00	4.02
887	2676	0.902984	ACCAGCAGTATCCGTCACCA	60.903	55.000	0.00	0.00	0.00	4.17
891	2680	1.899814	AGCAGTATCCGTCACCAGAAA	59.100	47.619	0.00	0.00	0.00	2.52
892	2681	2.000447	GCAGTATCCGTCACCAGAAAC	59.000	52.381	0.00	0.00	0.00	2.78
893	2682	2.353803	GCAGTATCCGTCACCAGAAACT	60.354	50.000	0.00	0.00	0.00	2.66
894	2683	3.512680	CAGTATCCGTCACCAGAAACTC	58.487	50.000	0.00	0.00	0.00	3.01
961	2750	4.013728	AGAGCTAAGATGAACTGACGAGT	58.986	43.478	0.00	0.00	0.00	4.18
963	2752	3.129638	AGCTAAGATGAACTGACGAGTCC	59.870	47.826	0.34	0.00	0.00	3.85
973	2762	1.170290	TGACGAGTCCGAGCAGAACA	61.170	55.000	0.34	0.00	39.50	3.18
1497	3308	3.426568	GACAAGCTGCTGCGGGAC	61.427	66.667	10.99	3.41	45.42	4.46
1670	3487	3.463690	GTACGTCGCGCGCAAGAA	61.464	61.111	32.61	10.33	46.11	2.52
1815	3632	1.160137	GCAAGAAGCAGATCAACCGT	58.840	50.000	0.00	0.00	44.79	4.83
1854	3671	1.375523	GATGGCGGAGACCACGTTT	60.376	57.895	0.00	0.00	44.17	3.60
1899	3719	1.205655	CTCGACATCAAGCTCCCTGAA	59.794	52.381	0.00	0.00	0.00	3.02
2081	3913	0.946221	GCCACAACTGGAGACGACTG	60.946	60.000	0.00	0.00	40.55	3.51
2083	3915	0.946221	CACAACTGGAGACGACTGGC	60.946	60.000	0.00	0.00	0.00	4.85
2385	4220	0.839277	TCAGGATGATGCCATTCGGT	59.161	50.000	0.00	0.00	42.56	4.69
2479	4314	1.170290	TGAGTTCGAGTGGCGTGAGA	61.170	55.000	0.00	0.00	41.80	3.27
2499	4334	3.461773	CCAGGCGACGAGGTGGAT	61.462	66.667	0.00	0.00	31.04	3.41
2605	4440	6.202954	GTGCTTTAGACAATCACACTACTTGT	59.797	38.462	0.00	0.00	39.97	3.16
2627	4462	0.825010	AACCTGCTTGCCTGAACTGG	60.825	55.000	0.00	0.00	0.00	4.00
2789	4624	4.385825	CAAAACTGCCACACCTCTACTTA	58.614	43.478	0.00	0.00	0.00	2.24
3120	4962	4.957759	AAATTACCACGATTTTCCCTCG	57.042	40.909	0.00	0.00	41.77	4.63
3132	4974	3.860968	TTTCCCTCGGGACAAAGTTAA	57.139	42.857	3.65	0.00	45.11	2.01
3232	5076	3.949113	TGTTTCAACAACTACACCCCTTC	59.051	43.478	0.00	0.00	35.67	3.46
3253	5098	6.095720	CCTTCCAAAGTTACCACTGTGTTTTA	59.904	38.462	7.08	0.00	36.59	1.52
3336	5181	3.118884	GGGTATGTGTACATCAACCTCGT	60.119	47.826	17.73	1.65	36.00	4.18
3340	5186	0.899720	TGTACATCAACCTCGTCCCC	59.100	55.000	0.00	0.00	0.00	4.81
3477	5323	7.010645	GGTCAAAAATTACCACGATGTTTTTGT	59.989	33.333	16.42	0.00	44.18	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	1.941294	CTTGCTGCATCTGACATCCTC	59.059	52.381	1.84	0.00	0.00	3.71
95	96	4.084013	ACATACACAGCAGAAACGTAAAGC	60.084	41.667	0.00	0.00	0.00	3.51
97	98	5.756347	AGAACATACACAGCAGAAACGTAAA	59.244	36.000	0.00	0.00	0.00	2.01
98	99	5.294356	AGAACATACACAGCAGAAACGTAA	58.706	37.500	0.00	0.00	0.00	3.18
107	108	3.181455	ACCAACAGAGAACATACACAGCA	60.181	43.478	0.00	0.00	0.00	4.41
162	166	1.071605	GAAGAGCGGTGTACAAGCAG	58.928	55.000	21.74	3.75	0.00	4.24
191	195	4.106925	GTGAGGCTGAGCAGGGGG	62.107	72.222	6.82	0.00	0.00	5.40
244	251	0.029834	GCAGCCCAAGATTATGCACG	59.970	55.000	0.00	0.00	36.88	5.34
283	299	6.405065	GGACTATCAAACCTACGACACATACA	60.405	42.308	0.00	0.00	0.00	2.29
284	300	5.975939	GGACTATCAAACCTACGACACATAC	59.024	44.000	0.00	0.00	0.00	2.39
285	301	5.889853	AGGACTATCAAACCTACGACACATA	59.110	40.000	0.00	0.00	31.78	2.29
286	302	4.710375	AGGACTATCAAACCTACGACACAT	59.290	41.667	0.00	0.00	31.78	3.21
287	303	4.084287	AGGACTATCAAACCTACGACACA	58.916	43.478	0.00	0.00	31.78	3.72
288	304	4.715527	AGGACTATCAAACCTACGACAC	57.284	45.455	0.00	0.00	31.78	3.67
289	305	4.525487	ACAAGGACTATCAAACCTACGACA	59.475	41.667	0.00	0.00	33.34	4.35
290	306	4.863131	CACAAGGACTATCAAACCTACGAC	59.137	45.833	0.00	0.00	33.34	4.34
291	307	4.525487	ACACAAGGACTATCAAACCTACGA	59.475	41.667	0.00	0.00	33.34	3.43
342	361	9.295214	CACACTAATGACTCAGTATTTGTCTAG	57.705	37.037	0.00	0.00	0.00	2.43
354	373	5.185828	ACTGATACTGCACACTAATGACTCA	59.814	40.000	0.00	0.00	0.00	3.41
474	495	7.428826	CAAGATACCTCAAAGACTTTGCTTTT	58.571	34.615	20.95	9.05	40.43	2.27
483	504	6.500684	TGAAATGCAAGATACCTCAAAGAC	57.499	37.500	0.00	0.00	0.00	3.01
506	528	2.416547	GCACGAGCACAAGTGTTCATAT	59.583	45.455	15.61	0.07	40.25	1.78
512	534	1.889105	CCAGCACGAGCACAAGTGT	60.889	57.895	7.77	0.00	45.49	3.55
513	535	1.563435	CTCCAGCACGAGCACAAGTG	61.563	60.000	7.77	0.00	45.49	3.16
515	537	1.301244	ACTCCAGCACGAGCACAAG	60.301	57.895	7.77	3.37	45.49	3.16
516	538	1.595109	CACTCCAGCACGAGCACAA	60.595	57.895	7.77	0.00	45.49	3.33
517	539	2.029518	CACTCCAGCACGAGCACA	59.970	61.111	7.77	0.00	45.49	4.57
518	540	0.319555	TAACACTCCAGCACGAGCAC	60.320	55.000	7.77	0.00	45.49	4.40
528	574	5.047590	TGCTAAAGATTCGAGTAACACTCCA	60.048	40.000	0.89	0.00	42.12	3.86
530	576	6.365247	TGTTGCTAAAGATTCGAGTAACACTC	59.635	38.462	12.40	0.00	39.75	3.51
750	2278	4.140924	CCTAAAGCAAGGGGAGGGATAATT	60.141	45.833	0.00	0.00	32.55	1.40
771	2421	3.157217	GAGCGACCCGATGCATCCT	62.157	63.158	20.87	10.63	0.00	3.24
772	2422	2.663188	GAGCGACCCGATGCATCC	60.663	66.667	20.87	5.88	0.00	3.51
780	2430	4.907034	CGATCGGTGAGCGACCCG	62.907	72.222	9.56	12.41	44.55	5.28
858	2647	3.435601	GGATACTGCTGGTTGGATTGGAT	60.436	47.826	0.00	0.00	0.00	3.41
859	2648	2.092429	GGATACTGCTGGTTGGATTGGA	60.092	50.000	0.00	0.00	0.00	3.53
862	2651	1.559682	ACGGATACTGCTGGTTGGATT	59.440	47.619	0.00	0.00	0.00	3.01
885	2674	1.996191	GCTGAAGCTACGAGTTTCTGG	59.004	52.381	14.49	8.83	36.55	3.86
886	2675	2.665537	CTGCTGAAGCTACGAGTTTCTG	59.334	50.000	3.61	10.94	42.66	3.02
887	2676	2.953020	CTGCTGAAGCTACGAGTTTCT	58.047	47.619	3.61	0.00	42.66	2.52
961	2750	1.674359	TTTGCTTTGTTCTGCTCGGA	58.326	45.000	0.00	0.00	0.00	4.55
963	2752	1.783140	GCTTTTGCTTTGTTCTGCTCG	59.217	47.619	0.00	0.00	43.35	5.03
973	2762	5.117592	CGATTGATTTCTTCGCTTTTGCTTT	59.882	36.000	0.00	0.00	44.80	3.51
1042	2838	1.809869	CGAGCAGGACGATGAGGAA	59.190	57.895	0.00	0.00	0.00	3.36
1151	2956	4.056125	CGTCGGCTGAGGAGTGCA	62.056	66.667	9.71	0.00	31.63	4.57
1670	3487	0.605589	CCAGAAGGCGAAGACACTCT	59.394	55.000	0.00	0.00	39.87	3.24
1854	3671	1.167781	TGTCCACGTACGAGTGCTCA	61.168	55.000	24.41	9.98	40.59	4.26
1899	3719	2.985456	CGGCCAGCCTCTTCTTCT	59.015	61.111	2.24	0.00	0.00	2.85
2081	3913	1.671901	CTCCTCGGAGACCTCTTGCC	61.672	65.000	6.58	0.00	44.53	4.52
2083	3915	0.033991	TCCTCCTCGGAGACCTCTTG	60.034	60.000	14.45	0.00	44.53	3.02
2385	4220	1.758514	GCAGATCCTCCTCCCGACA	60.759	63.158	0.00	0.00	0.00	4.35
2479	4314	2.579201	CACCTCGTCGCCTGGAAT	59.421	61.111	0.00	0.00	0.00	3.01
2605	4440	1.032014	GTTCAGGCAAGCAGGTTCAA	58.968	50.000	0.00	0.00	0.00	2.69
2627	4462	7.170489	CCACTGAGATATACACATGTGAACATC	59.830	40.741	31.94	24.95	33.61	3.06
2789	4624	7.364970	GGTCGTGTGGTATTTTAAAGTGAAAT	58.635	34.615	0.00	0.00	0.00	2.17
2818	4654	0.905337	AGAAGGTGGGGTCGAAGGAG	60.905	60.000	0.00	0.00	0.00	3.69
2895	4731	2.035155	GTTTTCTCGGGGGTGGGG	59.965	66.667	0.00	0.00	0.00	4.96
3007	4845	5.321927	CAACAAATACCTAAGGGTGAGGTT	58.678	41.667	0.00	0.00	45.40	3.50
3009	4847	3.694566	GCAACAAATACCTAAGGGTGAGG	59.305	47.826	0.00	0.00	46.75	3.86
3090	4931	7.961283	GGAAAATCGTGGTAATTTTCTGTACTC	59.039	37.037	16.48	1.46	45.76	2.59
3120	4962	5.675323	GCGAATACCATGTTAACTTTGTCCC	60.675	44.000	7.22	0.00	0.00	4.46
3132	4974	2.368439	ACTTGCATGCGAATACCATGT	58.632	42.857	14.09	0.22	41.56	3.21
3232	5076	7.932335	TGTATAAAACACAGTGGTAACTTTGG	58.068	34.615	5.31	0.00	38.24	3.28
3253	5098	8.475639	ACATCGAAGACCTTATAACTTGTGTAT	58.524	33.333	0.00	0.00	42.51	2.29
3336	5181	1.003812	CATGGTAACTTTGACCGGGGA	59.996	52.381	6.32	0.00	40.09	4.81
3340	5186	1.459450	CCCCATGGTAACTTTGACCG	58.541	55.000	11.73	0.00	40.09	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.