Multiple sequence alignment - TraesCS1D01G175500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G175500 chr1D 100.000 3539 0 0 1 3539 249756630 249753092 0.000000e+00 6536.0
1 TraesCS1D01G175500 chr1D 87.334 1579 180 11 957 2533 250070832 250069272 0.000000e+00 1790.0
2 TraesCS1D01G175500 chr1D 81.756 1469 213 29 1095 2526 442798163 442799613 0.000000e+00 1177.0
3 TraesCS1D01G175500 chr1D 97.511 683 17 0 1 683 331880662 331879980 0.000000e+00 1168.0
4 TraesCS1D01G175500 chr1D 80.287 1461 238 31 1094 2509 250139017 250137562 0.000000e+00 1057.0
5 TraesCS1D01G175500 chr1D 80.099 1417 234 31 1149 2529 467607328 467605924 0.000000e+00 1011.0
6 TraesCS1D01G175500 chr1D 80.835 647 81 19 2881 3502 146214017 146214645 5.350000e-128 468.0
7 TraesCS1D01G175500 chr1D 78.667 150 24 5 2669 2817 139550425 139550567 3.760000e-15 93.5
8 TraesCS1D01G175500 chr1A 95.060 1984 80 12 744 2712 319447760 319445780 0.000000e+00 3105.0
9 TraesCS1D01G175500 chr1A 87.444 1553 176 11 985 2533 319889407 319887870 0.000000e+00 1770.0
10 TraesCS1D01G175500 chr1A 79.494 1463 225 42 1094 2508 320155979 320154544 0.000000e+00 970.0
11 TraesCS1D01G175500 chr1B 87.612 1566 177 9 968 2533 364504887 364506435 0.000000e+00 1801.0
12 TraesCS1D01G175500 chr1B 96.167 887 33 1 865 1751 364811068 364811953 0.000000e+00 1448.0
13 TraesCS1D01G175500 chr1B 80.429 1446 236 31 1094 2497 364423132 364424572 0.000000e+00 1059.0
14 TraesCS1D01G175500 chr1B 95.338 622 29 0 1944 2565 364812164 364812785 0.000000e+00 989.0
15 TraesCS1D01G175500 chr1B 100.000 37 0 0 798 834 364811022 364811058 6.340000e-08 69.4
16 TraesCS1D01G175500 chr7D 97.657 683 16 0 1 683 95859278 95858596 0.000000e+00 1173.0
17 TraesCS1D01G175500 chr7D 79.661 649 96 17 2883 3505 428038019 428037381 5.430000e-118 435.0
18 TraesCS1D01G175500 chr7D 78.254 653 104 17 2881 3505 630508733 630509375 5.540000e-103 385.0
19 TraesCS1D01G175500 chr7D 100.000 32 0 0 684 715 95858581 95858550 3.820000e-05 60.2
20 TraesCS1D01G175500 chr3D 97.657 683 16 0 1 683 546202559 546203241 0.000000e+00 1173.0
21 TraesCS1D01G175500 chr3D 79.632 653 91 19 2882 3505 283336596 283335957 7.020000e-117 431.0
22 TraesCS1D01G175500 chr3D 80.851 470 77 8 3039 3505 554943121 554943580 1.210000e-94 357.0
23 TraesCS1D01G175500 chr3D 85.811 296 35 2 3211 3505 186605963 186606252 1.230000e-79 307.0
24 TraesCS1D01G175500 chr7A 95.461 683 28 3 1 682 51669676 51670356 0.000000e+00 1086.0
25 TraesCS1D01G175500 chr7A 100.000 29 0 0 684 712 51670372 51670400 2.000000e-03 54.7
26 TraesCS1D01G175500 chrUn 79.287 1458 231 52 1103 2511 28754124 28752689 0.000000e+00 953.0
27 TraesCS1D01G175500 chr5B 79.916 712 92 21 2829 3504 145598281 145598977 3.200000e-130 475.0
28 TraesCS1D01G175500 chr5D 81.669 611 68 19 2923 3504 134346602 134347197 5.350000e-128 468.0
29 TraesCS1D01G175500 chr5D 80.421 618 85 10 2910 3501 465707417 465706810 4.190000e-119 438.0
30 TraesCS1D01G175500 chr5D 98.726 157 2 0 1 157 481130998 481131154 2.690000e-71 279.0
31 TraesCS1D01G175500 chr3B 79.755 652 92 19 2882 3505 377435594 377434955 1.510000e-118 436.0
32 TraesCS1D01G175500 chr2D 79.542 655 93 21 2881 3505 159308983 159309626 2.520000e-116 429.0
33 TraesCS1D01G175500 chr2D 81.992 472 71 10 3039 3505 429088708 429089170 4.280000e-104 388.0
34 TraesCS1D01G175500 chr2D 77.863 655 100 23 2881 3505 170818916 170818277 7.220000e-97 364.0
35 TraesCS1D01G175500 chr5A 79.542 655 91 25 2881 3504 157482585 157483227 9.080000e-116 427.0
36 TraesCS1D01G175500 chr5A 87.963 108 12 1 1357 1464 708528374 708528268 3.710000e-25 126.0
37 TraesCS1D01G175500 chr4A 78.694 643 96 17 2893 3505 472670720 472671351 1.190000e-104 390.0
38 TraesCS1D01G175500 chr3A 78.593 654 93 25 2881 3505 449336859 449336224 4.280000e-104 388.0
39 TraesCS1D01G175500 chr3A 85.106 94 9 5 2727 2817 624428533 624428624 1.350000e-14 91.6
40 TraesCS1D01G175500 chr2A 84.066 364 47 4 3140 3501 170449695 170450049 1.220000e-89 340.0
41 TraesCS1D01G175500 chr6D 74.324 222 40 13 1248 1459 157451877 157451663 1.050000e-10 78.7
42 TraesCS1D01G175500 chr6B 72.759 290 55 18 1182 1459 281005720 281005443 3.790000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G175500 chr1D 249753092 249756630 3538 True 6536.000000 6536 100.000000 1 3539 1 chr1D.!!$R1 3538
1 TraesCS1D01G175500 chr1D 250069272 250070832 1560 True 1790.000000 1790 87.334000 957 2533 1 chr1D.!!$R2 1576
2 TraesCS1D01G175500 chr1D 442798163 442799613 1450 False 1177.000000 1177 81.756000 1095 2526 1 chr1D.!!$F3 1431
3 TraesCS1D01G175500 chr1D 331879980 331880662 682 True 1168.000000 1168 97.511000 1 683 1 chr1D.!!$R4 682
4 TraesCS1D01G175500 chr1D 250137562 250139017 1455 True 1057.000000 1057 80.287000 1094 2509 1 chr1D.!!$R3 1415
5 TraesCS1D01G175500 chr1D 467605924 467607328 1404 True 1011.000000 1011 80.099000 1149 2529 1 chr1D.!!$R5 1380
6 TraesCS1D01G175500 chr1D 146214017 146214645 628 False 468.000000 468 80.835000 2881 3502 1 chr1D.!!$F2 621
7 TraesCS1D01G175500 chr1A 319445780 319447760 1980 True 3105.000000 3105 95.060000 744 2712 1 chr1A.!!$R1 1968
8 TraesCS1D01G175500 chr1A 319887870 319889407 1537 True 1770.000000 1770 87.444000 985 2533 1 chr1A.!!$R2 1548
9 TraesCS1D01G175500 chr1A 320154544 320155979 1435 True 970.000000 970 79.494000 1094 2508 1 chr1A.!!$R3 1414
10 TraesCS1D01G175500 chr1B 364504887 364506435 1548 False 1801.000000 1801 87.612000 968 2533 1 chr1B.!!$F2 1565
11 TraesCS1D01G175500 chr1B 364423132 364424572 1440 False 1059.000000 1059 80.429000 1094 2497 1 chr1B.!!$F1 1403
12 TraesCS1D01G175500 chr1B 364811022 364812785 1763 False 835.466667 1448 97.168333 798 2565 3 chr1B.!!$F3 1767
13 TraesCS1D01G175500 chr7D 95858550 95859278 728 True 616.600000 1173 98.828500 1 715 2 chr7D.!!$R2 714
14 TraesCS1D01G175500 chr7D 428037381 428038019 638 True 435.000000 435 79.661000 2883 3505 1 chr7D.!!$R1 622
15 TraesCS1D01G175500 chr7D 630508733 630509375 642 False 385.000000 385 78.254000 2881 3505 1 chr7D.!!$F1 624
16 TraesCS1D01G175500 chr3D 546202559 546203241 682 False 1173.000000 1173 97.657000 1 683 1 chr3D.!!$F2 682
17 TraesCS1D01G175500 chr3D 283335957 283336596 639 True 431.000000 431 79.632000 2882 3505 1 chr3D.!!$R1 623
18 TraesCS1D01G175500 chr7A 51669676 51670400 724 False 570.350000 1086 97.730500 1 712 2 chr7A.!!$F1 711
19 TraesCS1D01G175500 chrUn 28752689 28754124 1435 True 953.000000 953 79.287000 1103 2511 1 chrUn.!!$R1 1408
20 TraesCS1D01G175500 chr5B 145598281 145598977 696 False 475.000000 475 79.916000 2829 3504 1 chr5B.!!$F1 675
21 TraesCS1D01G175500 chr5D 134346602 134347197 595 False 468.000000 468 81.669000 2923 3504 1 chr5D.!!$F1 581
22 TraesCS1D01G175500 chr5D 465706810 465707417 607 True 438.000000 438 80.421000 2910 3501 1 chr5D.!!$R1 591
23 TraesCS1D01G175500 chr3B 377434955 377435594 639 True 436.000000 436 79.755000 2882 3505 1 chr3B.!!$R1 623
24 TraesCS1D01G175500 chr2D 159308983 159309626 643 False 429.000000 429 79.542000 2881 3505 1 chr2D.!!$F1 624
25 TraesCS1D01G175500 chr2D 170818277 170818916 639 True 364.000000 364 77.863000 2881 3505 1 chr2D.!!$R1 624
26 TraesCS1D01G175500 chr5A 157482585 157483227 642 False 427.000000 427 79.542000 2881 3504 1 chr5A.!!$F1 623
27 TraesCS1D01G175500 chr4A 472670720 472671351 631 False 390.000000 390 78.694000 2893 3505 1 chr4A.!!$F1 612
28 TraesCS1D01G175500 chr3A 449336224 449336859 635 True 388.000000 388 78.593000 2881 3505 1 chr3A.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 512 0.036164 TTGTGTGGTCGGGATGGAAG 59.964 55.0 0.00 0.00 0.00 3.46 F
611 612 0.103390 TCGTCCTTGCGAACAGTTCA 59.897 50.0 13.82 0.00 37.99 3.18 F
2182 2453 0.104120 CATGGAGATCGGCGGTTACA 59.896 55.0 7.21 0.25 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1867 0.321996 GTCGTCTCTTTCCTGGGCTT 59.678 55.000 0.00 0.00 0.00 4.35 R
2250 2521 1.826096 GGAGAGAACTCTAACGGCCTT 59.174 52.381 0.00 0.00 40.61 4.35 R
3480 3821 0.943673 CAATGTGCTTGACGGTCACA 59.056 50.000 10.97 6.59 43.72 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.252197 GGTGAACGGAATACCTGGCT 59.748 55.000 0.00 0.00 0.00 4.75
324 325 3.996124 CGCCGCTATCCCCCTCTG 61.996 72.222 0.00 0.00 0.00 3.35
325 326 4.321966 GCCGCTATCCCCCTCTGC 62.322 72.222 0.00 0.00 0.00 4.26
326 327 3.996124 CCGCTATCCCCCTCTGCG 61.996 72.222 0.00 0.00 45.22 5.18
327 328 4.671569 CGCTATCCCCCTCTGCGC 62.672 72.222 0.00 0.00 40.15 6.09
328 329 4.321966 GCTATCCCCCTCTGCGCC 62.322 72.222 4.18 0.00 0.00 6.53
329 330 3.631046 CTATCCCCCTCTGCGCCC 61.631 72.222 4.18 0.00 0.00 6.13
337 338 3.838271 CTCTGCGCCCGCCTCTTA 61.838 66.667 4.18 0.00 41.09 2.10
338 339 3.781770 CTCTGCGCCCGCCTCTTAG 62.782 68.421 4.18 0.49 41.09 2.18
339 340 3.838271 CTGCGCCCGCCTCTTAGA 61.838 66.667 4.18 0.00 41.09 2.10
340 341 4.143333 TGCGCCCGCCTCTTAGAC 62.143 66.667 4.18 0.00 41.09 2.59
341 342 4.143333 GCGCCCGCCTCTTAGACA 62.143 66.667 0.00 0.00 34.56 3.41
342 343 2.202756 CGCCCGCCTCTTAGACAC 60.203 66.667 0.00 0.00 0.00 3.67
343 344 2.202756 GCCCGCCTCTTAGACACG 60.203 66.667 0.00 0.00 0.00 4.49
344 345 2.202756 CCCGCCTCTTAGACACGC 60.203 66.667 0.00 0.00 0.00 5.34
345 346 2.202756 CCGCCTCTTAGACACGCC 60.203 66.667 0.00 0.00 0.00 5.68
346 347 2.579787 CGCCTCTTAGACACGCCG 60.580 66.667 0.00 0.00 0.00 6.46
347 348 2.886124 GCCTCTTAGACACGCCGC 60.886 66.667 0.00 0.00 0.00 6.53
348 349 2.579787 CCTCTTAGACACGCCGCG 60.580 66.667 12.14 12.14 0.00 6.46
349 350 2.178521 CTCTTAGACACGCCGCGT 59.821 61.111 13.85 13.85 42.36 6.01
350 351 1.868251 CTCTTAGACACGCCGCGTC 60.868 63.158 17.16 5.91 38.32 5.19
351 352 3.238241 CTTAGACACGCCGCGTCG 61.238 66.667 17.16 8.47 38.32 5.12
368 369 2.757917 GGAGACGGCTCTGCTCCT 60.758 66.667 19.83 0.00 43.79 3.69
369 370 2.781158 GGAGACGGCTCTGCTCCTC 61.781 68.421 19.83 0.00 43.79 3.71
370 371 2.757917 AGACGGCTCTGCTCCTCC 60.758 66.667 0.00 0.00 0.00 4.30
371 372 3.844090 GACGGCTCTGCTCCTCCC 61.844 72.222 0.00 0.00 0.00 4.30
374 375 4.814041 GGCTCTGCTCCTCCCCCT 62.814 72.222 0.00 0.00 0.00 4.79
375 376 2.690510 GCTCTGCTCCTCCCCCTT 60.691 66.667 0.00 0.00 0.00 3.95
376 377 2.741055 GCTCTGCTCCTCCCCCTTC 61.741 68.421 0.00 0.00 0.00 3.46
377 378 2.041265 TCTGCTCCTCCCCCTTCC 59.959 66.667 0.00 0.00 0.00 3.46
378 379 3.474570 CTGCTCCTCCCCCTTCCG 61.475 72.222 0.00 0.00 0.00 4.30
379 380 4.332543 TGCTCCTCCCCCTTCCGT 62.333 66.667 0.00 0.00 0.00 4.69
380 381 3.787001 GCTCCTCCCCCTTCCGTG 61.787 72.222 0.00 0.00 0.00 4.94
381 382 3.787001 CTCCTCCCCCTTCCGTGC 61.787 72.222 0.00 0.00 0.00 5.34
388 389 4.431131 CCCTTCCGTGCCCAGCAT 62.431 66.667 0.00 0.00 41.91 3.79
389 390 2.825836 CCTTCCGTGCCCAGCATC 60.826 66.667 0.00 0.00 41.91 3.91
390 391 2.825836 CTTCCGTGCCCAGCATCC 60.826 66.667 0.00 0.00 41.91 3.51
391 392 3.329889 TTCCGTGCCCAGCATCCT 61.330 61.111 0.00 0.00 41.91 3.24
392 393 3.329542 TTCCGTGCCCAGCATCCTC 62.330 63.158 0.00 0.00 41.91 3.71
394 395 4.147449 CGTGCCCAGCATCCTCGA 62.147 66.667 0.00 0.00 41.91 4.04
395 396 2.202987 GTGCCCAGCATCCTCGAG 60.203 66.667 5.13 5.13 41.91 4.04
396 397 4.166888 TGCCCAGCATCCTCGAGC 62.167 66.667 6.99 0.00 31.71 5.03
398 399 4.598894 CCCAGCATCCTCGAGCGG 62.599 72.222 6.99 0.00 35.48 5.52
400 401 4.218578 CAGCATCCTCGAGCGGCT 62.219 66.667 15.26 15.26 35.48 5.52
401 402 3.910490 AGCATCCTCGAGCGGCTC 61.910 66.667 19.92 19.92 35.48 4.70
402 403 4.959596 GCATCCTCGAGCGGCTCC 62.960 72.222 23.36 6.87 0.00 4.70
403 404 4.637489 CATCCTCGAGCGGCTCCG 62.637 72.222 23.36 17.73 43.09 4.63
413 414 2.126071 CGGCTCCGCTTTCTCGAA 60.126 61.111 0.00 0.00 0.00 3.71
414 415 2.445438 CGGCTCCGCTTTCTCGAAC 61.445 63.158 0.00 0.00 0.00 3.95
415 416 1.079750 GGCTCCGCTTTCTCGAACT 60.080 57.895 0.00 0.00 0.00 3.01
416 417 0.172803 GGCTCCGCTTTCTCGAACTA 59.827 55.000 0.00 0.00 0.00 2.24
417 418 1.270068 GCTCCGCTTTCTCGAACTAC 58.730 55.000 0.00 0.00 0.00 2.73
418 419 1.910688 CTCCGCTTTCTCGAACTACC 58.089 55.000 0.00 0.00 0.00 3.18
419 420 0.169672 TCCGCTTTCTCGAACTACCG 59.830 55.000 0.00 0.00 0.00 4.02
420 421 0.801067 CCGCTTTCTCGAACTACCGG 60.801 60.000 0.00 0.00 0.00 5.28
421 422 1.411493 CGCTTTCTCGAACTACCGGC 61.411 60.000 0.00 0.00 0.00 6.13
422 423 0.389426 GCTTTCTCGAACTACCGGCA 60.389 55.000 0.00 0.00 0.00 5.69
423 424 1.739371 GCTTTCTCGAACTACCGGCAT 60.739 52.381 0.00 0.00 0.00 4.40
424 425 1.927174 CTTTCTCGAACTACCGGCATG 59.073 52.381 0.00 0.00 0.00 4.06
425 426 0.459585 TTCTCGAACTACCGGCATGC 60.460 55.000 9.90 9.90 0.00 4.06
426 427 1.883084 CTCGAACTACCGGCATGCC 60.883 63.158 27.67 27.67 0.00 4.40
437 438 4.916293 GCATGCCGCCGAGATCCA 62.916 66.667 6.36 0.00 32.94 3.41
438 439 2.969238 CATGCCGCCGAGATCCAC 60.969 66.667 0.00 0.00 0.00 4.02
439 440 4.592192 ATGCCGCCGAGATCCACG 62.592 66.667 3.40 3.40 0.00 4.94
445 446 4.227134 CCGAGATCCACGGGCTGG 62.227 72.222 17.65 0.00 45.65 4.85
446 447 4.899239 CGAGATCCACGGGCTGGC 62.899 72.222 0.00 0.00 40.39 4.85
447 448 4.554036 GAGATCCACGGGCTGGCC 62.554 72.222 10.75 10.75 40.39 5.36
478 479 4.812476 TCGCCGGCGATCTGGTTG 62.812 66.667 45.37 16.92 44.01 3.77
481 482 4.856801 CCGGCGATCTGGTTGGGG 62.857 72.222 9.30 0.00 33.91 4.96
485 486 3.781307 CGATCTGGTTGGGGCGGA 61.781 66.667 0.00 0.00 0.00 5.54
486 487 2.674754 GATCTGGTTGGGGCGGAA 59.325 61.111 0.00 0.00 0.00 4.30
487 488 1.227383 GATCTGGTTGGGGCGGAAT 59.773 57.895 0.00 0.00 0.00 3.01
488 489 0.819666 GATCTGGTTGGGGCGGAATC 60.820 60.000 0.00 0.00 0.00 2.52
489 490 2.608970 ATCTGGTTGGGGCGGAATCG 62.609 60.000 0.00 0.00 39.81 3.34
490 491 3.323286 TGGTTGGGGCGGAATCGA 61.323 61.111 0.00 0.00 39.00 3.59
491 492 2.192175 GGTTGGGGCGGAATCGAT 59.808 61.111 0.00 0.00 39.00 3.59
492 493 1.453197 GGTTGGGGCGGAATCGATT 60.453 57.895 11.20 11.20 39.00 3.34
493 494 1.035385 GGTTGGGGCGGAATCGATTT 61.035 55.000 12.81 0.00 39.00 2.17
494 495 0.100503 GTTGGGGCGGAATCGATTTG 59.899 55.000 12.81 9.36 39.00 2.32
495 496 0.322997 TTGGGGCGGAATCGATTTGT 60.323 50.000 12.81 0.00 39.00 2.83
496 497 1.029408 TGGGGCGGAATCGATTTGTG 61.029 55.000 12.81 6.49 39.00 3.33
497 498 1.029947 GGGGCGGAATCGATTTGTGT 61.030 55.000 12.81 0.00 39.00 3.72
498 499 0.098728 GGGCGGAATCGATTTGTGTG 59.901 55.000 12.81 2.28 39.00 3.82
499 500 0.098728 GGCGGAATCGATTTGTGTGG 59.901 55.000 12.81 0.04 39.00 4.17
500 501 0.802494 GCGGAATCGATTTGTGTGGT 59.198 50.000 12.81 0.00 39.00 4.16
501 502 1.202031 GCGGAATCGATTTGTGTGGTC 60.202 52.381 12.81 0.00 39.00 4.02
502 503 1.060553 CGGAATCGATTTGTGTGGTCG 59.939 52.381 12.81 3.51 39.00 4.79
503 504 1.396996 GGAATCGATTTGTGTGGTCGG 59.603 52.381 12.81 0.00 36.14 4.79
504 505 1.396996 GAATCGATTTGTGTGGTCGGG 59.603 52.381 12.81 0.00 36.14 5.14
505 506 0.611200 ATCGATTTGTGTGGTCGGGA 59.389 50.000 0.00 0.00 36.14 5.14
506 507 0.611200 TCGATTTGTGTGGTCGGGAT 59.389 50.000 0.00 0.00 36.14 3.85
507 508 0.726827 CGATTTGTGTGGTCGGGATG 59.273 55.000 0.00 0.00 0.00 3.51
508 509 1.094785 GATTTGTGTGGTCGGGATGG 58.905 55.000 0.00 0.00 0.00 3.51
509 510 0.695924 ATTTGTGTGGTCGGGATGGA 59.304 50.000 0.00 0.00 0.00 3.41
510 511 0.474614 TTTGTGTGGTCGGGATGGAA 59.525 50.000 0.00 0.00 0.00 3.53
511 512 0.036164 TTGTGTGGTCGGGATGGAAG 59.964 55.000 0.00 0.00 0.00 3.46
512 513 0.834261 TGTGTGGTCGGGATGGAAGA 60.834 55.000 0.00 0.00 0.00 2.87
513 514 0.108138 GTGTGGTCGGGATGGAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
514 515 0.252057 TGTGGTCGGGATGGAAGAGA 60.252 55.000 0.00 0.00 0.00 3.10
515 516 0.902531 GTGGTCGGGATGGAAGAGAA 59.097 55.000 0.00 0.00 0.00 2.87
516 517 1.278127 GTGGTCGGGATGGAAGAGAAA 59.722 52.381 0.00 0.00 0.00 2.52
517 518 1.982226 TGGTCGGGATGGAAGAGAAAA 59.018 47.619 0.00 0.00 0.00 2.29
518 519 2.373836 TGGTCGGGATGGAAGAGAAAAA 59.626 45.455 0.00 0.00 0.00 1.94
519 520 3.010420 GGTCGGGATGGAAGAGAAAAAG 58.990 50.000 0.00 0.00 0.00 2.27
520 521 3.307480 GGTCGGGATGGAAGAGAAAAAGA 60.307 47.826 0.00 0.00 0.00 2.52
521 522 3.935828 GTCGGGATGGAAGAGAAAAAGAG 59.064 47.826 0.00 0.00 0.00 2.85
522 523 3.583086 TCGGGATGGAAGAGAAAAAGAGT 59.417 43.478 0.00 0.00 0.00 3.24
523 524 3.686726 CGGGATGGAAGAGAAAAAGAGTG 59.313 47.826 0.00 0.00 0.00 3.51
524 525 4.013050 GGGATGGAAGAGAAAAAGAGTGG 58.987 47.826 0.00 0.00 0.00 4.00
525 526 4.263506 GGGATGGAAGAGAAAAAGAGTGGA 60.264 45.833 0.00 0.00 0.00 4.02
526 527 4.697828 GGATGGAAGAGAAAAAGAGTGGAC 59.302 45.833 0.00 0.00 0.00 4.02
527 528 5.513962 GGATGGAAGAGAAAAAGAGTGGACT 60.514 44.000 0.00 0.00 0.00 3.85
528 529 6.295916 GGATGGAAGAGAAAAAGAGTGGACTA 60.296 42.308 0.00 0.00 0.00 2.59
529 530 6.102897 TGGAAGAGAAAAAGAGTGGACTAG 57.897 41.667 0.00 0.00 0.00 2.57
530 531 5.602978 TGGAAGAGAAAAAGAGTGGACTAGT 59.397 40.000 0.00 0.00 0.00 2.57
531 532 6.160684 GGAAGAGAAAAAGAGTGGACTAGTC 58.839 44.000 14.87 14.87 0.00 2.59
532 533 6.014925 GGAAGAGAAAAAGAGTGGACTAGTCT 60.015 42.308 21.88 2.62 40.88 3.24
533 534 7.177041 GGAAGAGAAAAAGAGTGGACTAGTCTA 59.823 40.741 21.88 14.08 38.13 2.59
534 535 7.696992 AGAGAAAAAGAGTGGACTAGTCTAG 57.303 40.000 21.88 5.27 38.13 2.43
535 536 7.463431 AGAGAAAAAGAGTGGACTAGTCTAGA 58.537 38.462 21.88 4.43 38.13 2.43
536 537 7.945664 AGAGAAAAAGAGTGGACTAGTCTAGAA 59.054 37.037 21.88 3.71 38.13 2.10
537 538 8.480133 AGAAAAAGAGTGGACTAGTCTAGAAA 57.520 34.615 21.88 1.31 38.13 2.52
538 539 9.095700 AGAAAAAGAGTGGACTAGTCTAGAAAT 57.904 33.333 21.88 5.58 38.13 2.17
539 540 9.145865 GAAAAAGAGTGGACTAGTCTAGAAATG 57.854 37.037 21.88 0.00 38.13 2.32
540 541 6.783708 AAGAGTGGACTAGTCTAGAAATGG 57.216 41.667 21.88 0.00 38.13 3.16
541 542 6.080969 AGAGTGGACTAGTCTAGAAATGGA 57.919 41.667 21.88 0.00 37.31 3.41
542 543 6.678547 AGAGTGGACTAGTCTAGAAATGGAT 58.321 40.000 21.88 0.00 37.31 3.41
543 544 7.817440 AGAGTGGACTAGTCTAGAAATGGATA 58.183 38.462 21.88 0.00 37.31 2.59
544 545 7.942341 AGAGTGGACTAGTCTAGAAATGGATAG 59.058 40.741 21.88 0.00 37.31 2.08
545 546 7.588169 AGTGGACTAGTCTAGAAATGGATAGT 58.412 38.462 21.88 0.00 0.00 2.12
546 547 7.504238 AGTGGACTAGTCTAGAAATGGATAGTG 59.496 40.741 21.88 0.00 0.00 2.74
547 548 7.502895 GTGGACTAGTCTAGAAATGGATAGTGA 59.497 40.741 21.88 0.00 0.00 3.41
548 549 8.059461 TGGACTAGTCTAGAAATGGATAGTGAA 58.941 37.037 21.88 0.00 0.00 3.18
549 550 8.573035 GGACTAGTCTAGAAATGGATAGTGAAG 58.427 40.741 21.88 0.00 0.00 3.02
550 551 9.127277 GACTAGTCTAGAAATGGATAGTGAAGT 57.873 37.037 15.91 0.00 0.00 3.01
551 552 8.908903 ACTAGTCTAGAAATGGATAGTGAAGTG 58.091 37.037 14.02 0.00 0.00 3.16
552 553 7.118496 AGTCTAGAAATGGATAGTGAAGTGG 57.882 40.000 0.00 0.00 0.00 4.00
553 554 6.098982 AGTCTAGAAATGGATAGTGAAGTGGG 59.901 42.308 0.00 0.00 0.00 4.61
554 555 3.891049 AGAAATGGATAGTGAAGTGGGC 58.109 45.455 0.00 0.00 0.00 5.36
555 556 3.525199 AGAAATGGATAGTGAAGTGGGCT 59.475 43.478 0.00 0.00 0.00 5.19
556 557 3.287867 AATGGATAGTGAAGTGGGCTG 57.712 47.619 0.00 0.00 0.00 4.85
557 558 1.656587 TGGATAGTGAAGTGGGCTGT 58.343 50.000 0.00 0.00 0.00 4.40
558 559 1.555075 TGGATAGTGAAGTGGGCTGTC 59.445 52.381 0.00 0.00 0.00 3.51
559 560 1.834263 GGATAGTGAAGTGGGCTGTCT 59.166 52.381 0.00 0.00 0.00 3.41
560 561 2.159028 GGATAGTGAAGTGGGCTGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
561 562 2.009681 TAGTGAAGTGGGCTGTCTCA 57.990 50.000 0.00 0.00 0.00 3.27
562 563 0.394565 AGTGAAGTGGGCTGTCTCAC 59.605 55.000 0.00 0.00 0.00 3.51
563 564 0.603975 GTGAAGTGGGCTGTCTCACC 60.604 60.000 0.00 0.00 34.67 4.02
564 565 1.374758 GAAGTGGGCTGTCTCACCG 60.375 63.158 0.00 0.00 34.67 4.94
565 566 3.537206 AAGTGGGCTGTCTCACCGC 62.537 63.158 0.00 0.00 34.67 5.68
568 569 4.803426 GGGCTGTCTCACCGCGAG 62.803 72.222 8.23 0.00 43.80 5.03
576 577 2.065993 TCTCACCGCGAGAGAAAAAG 57.934 50.000 23.02 0.62 46.18 2.27
577 578 1.071605 CTCACCGCGAGAGAAAAAGG 58.928 55.000 19.59 0.00 45.45 3.11
578 579 0.391597 TCACCGCGAGAGAAAAAGGT 59.608 50.000 8.23 0.00 0.00 3.50
579 580 1.202604 TCACCGCGAGAGAAAAAGGTT 60.203 47.619 8.23 0.00 0.00 3.50
580 581 1.194772 CACCGCGAGAGAAAAAGGTTC 59.805 52.381 8.23 0.00 0.00 3.62
581 582 0.438830 CCGCGAGAGAAAAAGGTTCG 59.561 55.000 8.23 0.00 0.00 3.95
583 584 0.179248 GCGAGAGAAAAAGGTTCGCG 60.179 55.000 0.00 0.00 45.53 5.87
584 585 0.179248 CGAGAGAAAAAGGTTCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
585 586 0.166161 GAGAGAAAAAGGTTCGCGCC 59.834 55.000 0.00 0.00 0.00 6.53
586 587 1.154469 GAGAAAAAGGTTCGCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
587 588 1.562575 GAGAAAAAGGTTCGCGCCGA 61.563 55.000 0.00 0.00 0.00 5.54
588 589 0.953960 AGAAAAAGGTTCGCGCCGAT 60.954 50.000 0.00 0.00 35.23 4.18
589 590 0.520619 GAAAAAGGTTCGCGCCGATC 60.521 55.000 0.00 1.74 35.23 3.69
590 591 1.918868 AAAAAGGTTCGCGCCGATCC 61.919 55.000 16.53 16.53 43.55 3.36
591 592 4.832608 AAGGTTCGCGCCGATCCC 62.833 66.667 19.05 14.07 44.07 3.85
599 600 3.528370 CGCCGATCCCTCGTCCTT 61.528 66.667 0.00 0.00 43.49 3.36
600 601 2.107141 GCCGATCCCTCGTCCTTG 59.893 66.667 0.00 0.00 43.49 3.61
601 602 2.107141 CCGATCCCTCGTCCTTGC 59.893 66.667 0.00 0.00 43.49 4.01
602 603 2.278857 CGATCCCTCGTCCTTGCG 60.279 66.667 0.00 0.00 40.07 4.85
603 604 2.771639 CGATCCCTCGTCCTTGCGA 61.772 63.158 0.00 0.00 40.07 5.10
604 605 1.515954 GATCCCTCGTCCTTGCGAA 59.484 57.895 0.00 0.00 40.57 4.70
605 606 0.806492 GATCCCTCGTCCTTGCGAAC 60.806 60.000 0.00 0.00 40.57 3.95
606 607 1.541310 ATCCCTCGTCCTTGCGAACA 61.541 55.000 0.00 0.00 40.57 3.18
607 608 1.738099 CCCTCGTCCTTGCGAACAG 60.738 63.158 0.00 0.00 40.57 3.16
608 609 1.006102 CCTCGTCCTTGCGAACAGT 60.006 57.895 0.00 0.00 40.57 3.55
609 610 0.600255 CCTCGTCCTTGCGAACAGTT 60.600 55.000 0.00 0.00 40.57 3.16
610 611 0.784778 CTCGTCCTTGCGAACAGTTC 59.215 55.000 2.85 2.85 40.57 3.01
611 612 0.103390 TCGTCCTTGCGAACAGTTCA 59.897 50.000 13.82 0.00 37.99 3.18
612 613 0.232303 CGTCCTTGCGAACAGTTCAC 59.768 55.000 13.82 4.19 0.00 3.18
613 614 0.232303 GTCCTTGCGAACAGTTCACG 59.768 55.000 13.82 2.12 0.00 4.35
614 615 0.103390 TCCTTGCGAACAGTTCACGA 59.897 50.000 13.82 2.68 0.00 4.35
615 616 0.232303 CCTTGCGAACAGTTCACGAC 59.768 55.000 13.82 0.51 0.00 4.34
616 617 0.232303 CTTGCGAACAGTTCACGACC 59.768 55.000 13.82 0.00 0.00 4.79
617 618 1.484227 TTGCGAACAGTTCACGACCG 61.484 55.000 13.82 0.00 0.00 4.79
618 619 1.659335 GCGAACAGTTCACGACCGA 60.659 57.895 13.82 0.00 0.00 4.69
619 620 1.007336 GCGAACAGTTCACGACCGAT 61.007 55.000 13.82 0.00 0.00 4.18
620 621 0.708370 CGAACAGTTCACGACCGATG 59.292 55.000 13.82 0.00 0.00 3.84
621 622 1.664874 CGAACAGTTCACGACCGATGA 60.665 52.381 13.82 0.00 0.00 2.92
622 623 1.719780 GAACAGTTCACGACCGATGAC 59.280 52.381 8.54 0.00 0.00 3.06
623 624 0.386858 ACAGTTCACGACCGATGACG 60.387 55.000 0.00 0.00 39.43 4.35
624 625 0.386858 CAGTTCACGACCGATGACGT 60.387 55.000 0.00 0.00 43.39 4.34
628 629 4.430765 ACGACCGATGACGTGGCC 62.431 66.667 0.00 0.00 41.15 5.36
629 630 4.429212 CGACCGATGACGTGGCCA 62.429 66.667 0.00 0.00 37.88 5.36
630 631 2.813908 GACCGATGACGTGGCCAC 60.814 66.667 26.78 26.78 37.88 5.01
641 642 3.961570 GTGGCCACGAATTTACGTC 57.038 52.632 22.49 0.00 44.76 4.34
642 643 1.149987 GTGGCCACGAATTTACGTCA 58.850 50.000 22.49 0.00 44.76 4.35
643 644 1.532007 GTGGCCACGAATTTACGTCAA 59.468 47.619 22.49 0.00 44.76 3.18
644 645 2.031857 GTGGCCACGAATTTACGTCAAA 60.032 45.455 22.49 0.00 44.76 2.69
645 646 2.617308 TGGCCACGAATTTACGTCAAAA 59.383 40.909 0.00 0.00 44.76 2.44
646 647 3.066342 TGGCCACGAATTTACGTCAAAAA 59.934 39.130 0.00 0.00 44.76 1.94
647 648 4.231439 GGCCACGAATTTACGTCAAAAAT 58.769 39.130 0.00 0.00 44.76 1.82
648 649 5.048921 TGGCCACGAATTTACGTCAAAAATA 60.049 36.000 0.00 0.00 44.76 1.40
649 650 5.510323 GGCCACGAATTTACGTCAAAAATAG 59.490 40.000 0.00 0.00 44.76 1.73
650 651 6.081693 GCCACGAATTTACGTCAAAAATAGT 58.918 36.000 0.00 0.00 44.76 2.12
651 652 6.032042 GCCACGAATTTACGTCAAAAATAGTG 59.968 38.462 16.09 16.09 44.76 2.74
652 653 6.032042 CCACGAATTTACGTCAAAAATAGTGC 59.968 38.462 16.89 0.00 44.76 4.40
653 654 5.786574 ACGAATTTACGTCAAAAATAGTGCG 59.213 36.000 0.00 0.00 43.02 5.34
654 655 5.224313 CGAATTTACGTCAAAAATAGTGCGG 59.776 40.000 0.00 0.00 0.00 5.69
655 656 4.407496 TTTACGTCAAAAATAGTGCGGG 57.593 40.909 0.00 0.00 0.00 6.13
656 657 1.886886 ACGTCAAAAATAGTGCGGGT 58.113 45.000 0.00 0.00 0.00 5.28
657 658 1.533731 ACGTCAAAAATAGTGCGGGTG 59.466 47.619 0.00 0.00 0.00 4.61
658 659 1.801771 CGTCAAAAATAGTGCGGGTGA 59.198 47.619 0.00 0.00 0.00 4.02
659 660 2.418628 CGTCAAAAATAGTGCGGGTGAT 59.581 45.455 0.00 0.00 0.00 3.06
660 661 3.485216 CGTCAAAAATAGTGCGGGTGATC 60.485 47.826 0.00 0.00 0.00 2.92
661 662 3.438781 GTCAAAAATAGTGCGGGTGATCA 59.561 43.478 0.00 0.00 0.00 2.92
662 663 3.689161 TCAAAAATAGTGCGGGTGATCAG 59.311 43.478 0.00 0.00 0.00 2.90
663 664 3.627395 AAAATAGTGCGGGTGATCAGA 57.373 42.857 0.00 0.00 0.00 3.27
664 665 2.604046 AATAGTGCGGGTGATCAGAC 57.396 50.000 0.00 0.00 0.00 3.51
665 666 0.385751 ATAGTGCGGGTGATCAGACG 59.614 55.000 13.10 13.10 0.00 4.18
666 667 0.678684 TAGTGCGGGTGATCAGACGA 60.679 55.000 19.69 5.45 0.00 4.20
667 668 1.141881 GTGCGGGTGATCAGACGAT 59.858 57.895 19.69 0.00 33.31 3.73
668 669 1.141665 TGCGGGTGATCAGACGATG 59.858 57.895 19.69 2.04 29.66 3.84
669 670 1.592669 GCGGGTGATCAGACGATGG 60.593 63.158 19.69 0.00 29.66 3.51
670 671 2.016393 GCGGGTGATCAGACGATGGA 62.016 60.000 19.69 0.00 29.66 3.41
671 672 0.676184 CGGGTGATCAGACGATGGAT 59.324 55.000 12.30 0.00 29.66 3.41
672 673 1.603931 CGGGTGATCAGACGATGGATG 60.604 57.143 12.30 0.00 29.66 3.51
673 674 1.688735 GGGTGATCAGACGATGGATGA 59.311 52.381 0.00 0.00 29.66 2.92
674 675 2.103094 GGGTGATCAGACGATGGATGAA 59.897 50.000 0.00 0.00 29.66 2.57
675 676 3.388308 GGTGATCAGACGATGGATGAAG 58.612 50.000 0.00 0.00 29.66 3.02
676 677 2.799412 GTGATCAGACGATGGATGAAGC 59.201 50.000 0.00 0.00 29.66 3.86
677 678 2.057316 GATCAGACGATGGATGAAGCG 58.943 52.381 0.00 0.00 29.66 4.68
678 679 0.817654 TCAGACGATGGATGAAGCGT 59.182 50.000 0.00 0.00 39.99 5.07
679 680 1.204704 TCAGACGATGGATGAAGCGTT 59.795 47.619 0.00 0.00 37.07 4.84
680 681 1.590238 CAGACGATGGATGAAGCGTTC 59.410 52.381 0.00 0.00 37.07 3.95
681 682 0.572590 GACGATGGATGAAGCGTTCG 59.427 55.000 0.00 0.00 37.07 3.95
682 683 0.806102 ACGATGGATGAAGCGTTCGG 60.806 55.000 0.00 0.00 32.42 4.30
683 684 0.527600 CGATGGATGAAGCGTTCGGA 60.528 55.000 0.00 0.00 0.00 4.55
684 685 1.651987 GATGGATGAAGCGTTCGGAA 58.348 50.000 0.00 0.00 0.00 4.30
685 686 1.327764 GATGGATGAAGCGTTCGGAAC 59.672 52.381 10.83 10.83 0.00 3.62
686 687 0.672401 TGGATGAAGCGTTCGGAACC 60.672 55.000 14.83 8.04 0.00 3.62
687 688 0.391263 GGATGAAGCGTTCGGAACCT 60.391 55.000 14.83 10.06 0.00 3.50
688 689 0.721718 GATGAAGCGTTCGGAACCTG 59.278 55.000 14.83 3.58 0.00 4.00
689 690 0.320374 ATGAAGCGTTCGGAACCTGA 59.680 50.000 14.83 5.02 0.00 3.86
690 691 0.599204 TGAAGCGTTCGGAACCTGAC 60.599 55.000 14.83 10.77 0.00 3.51
691 692 1.615107 GAAGCGTTCGGAACCTGACG 61.615 60.000 14.83 5.12 38.45 4.35
692 693 2.355481 GCGTTCGGAACCTGACGT 60.355 61.111 14.83 0.00 37.78 4.34
693 694 1.952635 GCGTTCGGAACCTGACGTT 60.953 57.895 14.83 0.00 37.78 3.99
702 703 2.259204 CCTGACGTTCGGGCGTTA 59.741 61.111 6.63 2.51 45.79 3.18
703 704 1.153706 CCTGACGTTCGGGCGTTAT 60.154 57.895 6.63 0.00 45.79 1.89
704 705 0.738412 CCTGACGTTCGGGCGTTATT 60.738 55.000 6.63 0.00 45.79 1.40
705 706 0.368907 CTGACGTTCGGGCGTTATTG 59.631 55.000 6.63 0.00 45.79 1.90
706 707 0.319727 TGACGTTCGGGCGTTATTGT 60.320 50.000 6.63 0.00 45.79 2.71
707 708 0.792031 GACGTTCGGGCGTTATTGTT 59.208 50.000 6.63 0.00 45.79 2.83
708 709 1.195222 GACGTTCGGGCGTTATTGTTT 59.805 47.619 6.63 0.00 45.79 2.83
709 710 1.195222 ACGTTCGGGCGTTATTGTTTC 59.805 47.619 0.00 0.00 43.04 2.78
710 711 1.464521 CGTTCGGGCGTTATTGTTTCC 60.465 52.381 0.00 0.00 0.00 3.13
711 712 0.797542 TTCGGGCGTTATTGTTTCCG 59.202 50.000 0.00 0.00 38.92 4.30
712 713 0.320596 TCGGGCGTTATTGTTTCCGT 60.321 50.000 0.00 0.00 38.70 4.69
713 714 0.518195 CGGGCGTTATTGTTTCCGTT 59.482 50.000 0.00 0.00 33.63 4.44
714 715 1.069091 CGGGCGTTATTGTTTCCGTTT 60.069 47.619 0.00 0.00 33.63 3.60
715 716 2.605097 CGGGCGTTATTGTTTCCGTTTT 60.605 45.455 0.00 0.00 33.63 2.43
716 717 3.382855 GGGCGTTATTGTTTCCGTTTTT 58.617 40.909 0.00 0.00 0.00 1.94
717 718 4.544651 GGGCGTTATTGTTTCCGTTTTTA 58.455 39.130 0.00 0.00 0.00 1.52
718 719 5.162794 GGGCGTTATTGTTTCCGTTTTTAT 58.837 37.500 0.00 0.00 0.00 1.40
719 720 6.320944 GGGCGTTATTGTTTCCGTTTTTATA 58.679 36.000 0.00 0.00 0.00 0.98
720 721 6.805760 GGGCGTTATTGTTTCCGTTTTTATAA 59.194 34.615 0.00 0.00 0.00 0.98
721 722 7.328005 GGGCGTTATTGTTTCCGTTTTTATAAA 59.672 33.333 0.00 0.00 0.00 1.40
722 723 8.367396 GGCGTTATTGTTTCCGTTTTTATAAAG 58.633 33.333 0.00 0.00 0.00 1.85
723 724 8.367396 GCGTTATTGTTTCCGTTTTTATAAAGG 58.633 33.333 0.00 0.00 0.00 3.11
724 725 8.367396 CGTTATTGTTTCCGTTTTTATAAAGGC 58.633 33.333 0.00 0.00 0.00 4.35
725 726 8.649841 GTTATTGTTTCCGTTTTTATAAAGGCC 58.350 33.333 0.00 0.00 0.00 5.19
726 727 5.786264 TGTTTCCGTTTTTATAAAGGCCA 57.214 34.783 5.01 0.00 0.00 5.36
727 728 5.774630 TGTTTCCGTTTTTATAAAGGCCAG 58.225 37.500 5.01 0.00 0.00 4.85
728 729 5.165676 GTTTCCGTTTTTATAAAGGCCAGG 58.834 41.667 5.01 0.56 0.00 4.45
729 730 4.036941 TCCGTTTTTATAAAGGCCAGGT 57.963 40.909 5.01 0.00 0.00 4.00
730 731 3.759618 TCCGTTTTTATAAAGGCCAGGTG 59.240 43.478 5.01 0.00 0.00 4.00
731 732 3.508402 CCGTTTTTATAAAGGCCAGGTGT 59.492 43.478 5.01 0.00 0.00 4.16
732 733 4.021807 CCGTTTTTATAAAGGCCAGGTGTT 60.022 41.667 5.01 0.00 0.00 3.32
733 734 4.920927 CGTTTTTATAAAGGCCAGGTGTTG 59.079 41.667 5.01 0.00 0.00 3.33
741 742 3.820425 CCAGGTGTTGGCCCTAGA 58.180 61.111 0.00 0.00 40.87 2.43
742 743 1.299976 CCAGGTGTTGGCCCTAGAC 59.700 63.158 0.00 0.00 40.87 2.59
747 748 0.672711 GTGTTGGCCCTAGACGGTTC 60.673 60.000 0.00 0.00 0.00 3.62
755 756 5.586877 TGGCCCTAGACGGTTCTTATATAT 58.413 41.667 0.00 0.00 32.75 0.86
2182 2453 0.104120 CATGGAGATCGGCGGTTACA 59.896 55.000 7.21 0.25 0.00 2.41
2250 2521 4.373116 GACGAGCGGGAGTGGCAA 62.373 66.667 0.00 0.00 0.00 4.52
2289 2560 3.706373 GAGCGGTTCCTGCCAGGA 61.706 66.667 10.05 10.05 44.10 3.86
2499 2773 2.400399 GAGTTCACCGTCGTCATGAAA 58.600 47.619 0.00 0.00 34.28 2.69
2572 2846 1.999051 GCAACTGGCAGTCGTATCG 59.001 57.895 22.31 6.68 43.97 2.92
2628 2915 3.476552 TCATGTTGGGAGTGAGTTGTTC 58.523 45.455 0.00 0.00 0.00 3.18
2641 2928 7.065204 GGAGTGAGTTGTTCCTAATTGATTCTC 59.935 40.741 0.00 0.00 0.00 2.87
2642 2929 6.591834 AGTGAGTTGTTCCTAATTGATTCTCG 59.408 38.462 0.00 0.00 0.00 4.04
2643 2930 6.590292 GTGAGTTGTTCCTAATTGATTCTCGA 59.410 38.462 0.00 0.00 0.00 4.04
2644 2931 7.278868 GTGAGTTGTTCCTAATTGATTCTCGAT 59.721 37.037 0.00 0.00 0.00 3.59
2645 2932 7.824289 TGAGTTGTTCCTAATTGATTCTCGATT 59.176 33.333 0.00 0.00 34.92 3.34
2646 2933 9.314321 GAGTTGTTCCTAATTGATTCTCGATTA 57.686 33.333 0.00 0.00 32.90 1.75
2647 2934 9.319143 AGTTGTTCCTAATTGATTCTCGATTAG 57.681 33.333 13.71 13.71 44.70 1.73
2648 2935 9.314321 GTTGTTCCTAATTGATTCTCGATTAGA 57.686 33.333 19.18 8.09 46.56 2.10
2649 2936 9.884636 TTGTTCCTAATTGATTCTCGATTAGAA 57.115 29.630 19.18 11.83 46.56 2.10
2650 2937 9.314321 TGTTCCTAATTGATTCTCGATTAGAAC 57.686 33.333 19.18 18.75 46.56 3.01
2651 2938 9.314321 GTTCCTAATTGATTCTCGATTAGAACA 57.686 33.333 19.18 6.22 46.56 3.18
2661 2948 8.958175 ATTCTCGATTAGAACATCTCGAATAC 57.042 34.615 0.00 0.00 46.90 1.89
2662 2949 7.492352 TCTCGATTAGAACATCTCGAATACA 57.508 36.000 0.00 0.00 39.39 2.29
2666 2953 8.403236 TCGATTAGAACATCTCGAATACAAGAA 58.597 33.333 0.00 0.00 37.22 2.52
2702 2989 9.048446 TGAAAGATGTAAAACTAGGTGTTGTAC 57.952 33.333 0.00 0.00 45.24 2.90
2716 3003 5.950758 GTGTTGTACCATTTACATCACCA 57.049 39.130 11.90 0.00 39.97 4.17
2717 3004 5.938322 GTGTTGTACCATTTACATCACCAG 58.062 41.667 11.90 0.00 39.97 4.00
2718 3005 5.703592 GTGTTGTACCATTTACATCACCAGA 59.296 40.000 11.90 0.00 39.97 3.86
2719 3006 6.205853 GTGTTGTACCATTTACATCACCAGAA 59.794 38.462 11.90 0.00 39.97 3.02
2720 3007 6.773200 TGTTGTACCATTTACATCACCAGAAA 59.227 34.615 0.00 0.00 0.00 2.52
2721 3008 7.285629 TGTTGTACCATTTACATCACCAGAAAA 59.714 33.333 0.00 0.00 0.00 2.29
2722 3009 8.303876 GTTGTACCATTTACATCACCAGAAAAT 58.696 33.333 0.00 0.00 0.00 1.82
2723 3010 9.521841 TTGTACCATTTACATCACCAGAAAATA 57.478 29.630 0.00 0.00 0.00 1.40
2724 3011 9.693739 TGTACCATTTACATCACCAGAAAATAT 57.306 29.630 0.00 0.00 0.00 1.28
2762 3049 6.894339 AAAAAGATAACTCCAACCGTTGAT 57.106 33.333 13.04 0.00 0.00 2.57
2763 3050 7.989416 AAAAAGATAACTCCAACCGTTGATA 57.011 32.000 13.04 0.00 0.00 2.15
2764 3051 8.575649 AAAAAGATAACTCCAACCGTTGATAT 57.424 30.769 13.04 5.85 0.00 1.63
2765 3052 9.675464 AAAAAGATAACTCCAACCGTTGATATA 57.325 29.630 13.04 1.46 0.00 0.86
2766 3053 9.847224 AAAAGATAACTCCAACCGTTGATATAT 57.153 29.630 13.04 5.85 0.00 0.86
2772 3059 8.974060 AACTCCAACCGTTGATATATATTTGT 57.026 30.769 13.04 0.00 0.00 2.83
2773 3060 8.378172 ACTCCAACCGTTGATATATATTTGTG 57.622 34.615 13.04 0.00 0.00 3.33
2774 3061 8.208224 ACTCCAACCGTTGATATATATTTGTGA 58.792 33.333 13.04 0.00 0.00 3.58
2775 3062 8.373048 TCCAACCGTTGATATATATTTGTGAC 57.627 34.615 13.04 0.00 0.00 3.67
2776 3063 7.170151 TCCAACCGTTGATATATATTTGTGACG 59.830 37.037 13.04 4.13 0.00 4.35
2777 3064 7.042321 CCAACCGTTGATATATATTTGTGACGT 60.042 37.037 13.04 0.00 0.00 4.34
2778 3065 8.970293 CAACCGTTGATATATATTTGTGACGTA 58.030 33.333 5.23 0.00 0.00 3.57
2779 3066 9.531942 AACCGTTGATATATATTTGTGACGTAA 57.468 29.630 0.00 0.00 0.00 3.18
2780 3067 9.531942 ACCGTTGATATATATTTGTGACGTAAA 57.468 29.630 0.00 0.00 0.00 2.01
2791 3078 7.964545 ATTTGTGACGTAAAACTTCAACTTC 57.035 32.000 0.00 0.00 27.84 3.01
2792 3079 6.483385 TTGTGACGTAAAACTTCAACTTCA 57.517 33.333 0.00 0.00 27.84 3.02
2793 3080 6.483385 TGTGACGTAAAACTTCAACTTCAA 57.517 33.333 0.00 0.00 27.84 2.69
2794 3081 7.079182 TGTGACGTAAAACTTCAACTTCAAT 57.921 32.000 0.00 0.00 27.84 2.57
2795 3082 8.199176 TGTGACGTAAAACTTCAACTTCAATA 57.801 30.769 0.00 0.00 27.84 1.90
2796 3083 8.332464 TGTGACGTAAAACTTCAACTTCAATAG 58.668 33.333 0.00 0.00 27.84 1.73
2797 3084 8.545420 GTGACGTAAAACTTCAACTTCAATAGA 58.455 33.333 0.00 0.00 27.84 1.98
2798 3085 9.268268 TGACGTAAAACTTCAACTTCAATAGAT 57.732 29.630 0.00 0.00 0.00 1.98
2799 3086 9.530129 GACGTAAAACTTCAACTTCAATAGATG 57.470 33.333 0.00 0.00 0.00 2.90
2800 3087 9.268268 ACGTAAAACTTCAACTTCAATAGATGA 57.732 29.630 0.00 0.00 34.24 2.92
2803 3090 8.976986 AAAACTTCAACTTCAATAGATGATGC 57.023 30.769 0.00 0.00 35.82 3.91
2804 3091 7.692460 AACTTCAACTTCAATAGATGATGCA 57.308 32.000 0.00 0.00 35.82 3.96
2805 3092 7.876936 ACTTCAACTTCAATAGATGATGCAT 57.123 32.000 0.00 0.00 35.82 3.96
2806 3093 8.969260 ACTTCAACTTCAATAGATGATGCATA 57.031 30.769 0.00 0.00 35.82 3.14
2807 3094 9.570468 ACTTCAACTTCAATAGATGATGCATAT 57.430 29.630 0.00 0.00 35.82 1.78
2808 3095 9.827411 CTTCAACTTCAATAGATGATGCATATG 57.173 33.333 0.00 0.00 35.82 1.78
2809 3096 8.913487 TCAACTTCAATAGATGATGCATATGT 57.087 30.769 0.00 0.00 38.03 2.29
2810 3097 8.780249 TCAACTTCAATAGATGATGCATATGTG 58.220 33.333 0.00 0.00 38.03 3.21
2811 3098 8.780249 CAACTTCAATAGATGATGCATATGTGA 58.220 33.333 0.00 0.00 38.03 3.58
2812 3099 8.913487 ACTTCAATAGATGATGCATATGTGAA 57.087 30.769 0.00 2.59 38.03 3.18
2813 3100 9.000486 ACTTCAATAGATGATGCATATGTGAAG 58.000 33.333 20.09 20.09 40.36 3.02
2814 3101 9.216117 CTTCAATAGATGATGCATATGTGAAGA 57.784 33.333 18.46 4.21 38.86 2.87
2815 3102 9.734984 TTCAATAGATGATGCATATGTGAAGAT 57.265 29.630 0.00 0.00 38.03 2.40
2816 3103 9.162764 TCAATAGATGATGCATATGTGAAGATG 57.837 33.333 0.00 0.00 31.50 2.90
2817 3104 9.162764 CAATAGATGATGCATATGTGAAGATGA 57.837 33.333 0.00 0.00 0.00 2.92
2818 3105 8.719560 ATAGATGATGCATATGTGAAGATGAC 57.280 34.615 0.00 0.00 0.00 3.06
2819 3106 5.638234 AGATGATGCATATGTGAAGATGACG 59.362 40.000 0.00 0.00 0.00 4.35
2820 3107 4.060205 TGATGCATATGTGAAGATGACGG 58.940 43.478 0.00 0.00 0.00 4.79
2821 3108 2.212652 TGCATATGTGAAGATGACGGC 58.787 47.619 4.29 0.00 0.00 5.68
2822 3109 1.532868 GCATATGTGAAGATGACGGCC 59.467 52.381 4.29 0.00 0.00 6.13
2823 3110 1.794701 CATATGTGAAGATGACGGCCG 59.205 52.381 26.86 26.86 0.00 6.13
2824 3111 0.529773 TATGTGAAGATGACGGCCGC 60.530 55.000 28.58 19.01 0.00 6.53
2825 3112 3.554692 GTGAAGATGACGGCCGCG 61.555 66.667 28.58 1.99 0.00 6.46
2826 3113 3.754530 TGAAGATGACGGCCGCGA 61.755 61.111 28.58 12.98 0.00 5.87
2827 3114 2.956964 GAAGATGACGGCCGCGAG 60.957 66.667 28.58 0.00 0.00 5.03
2846 3133 1.374758 GCTCTGTACAGCCGCTGTT 60.375 57.895 30.08 14.78 42.59 3.16
2849 3136 4.673403 TGTACAGCCGCTGTTCAG 57.327 55.556 30.08 1.93 42.59 3.02
2852 3139 3.932580 TACAGCCGCTGTTCAGCCG 62.933 63.158 30.08 12.73 42.59 5.52
2861 3148 1.882198 CTGTTCAGCCGCGTAATTTG 58.118 50.000 4.92 0.00 0.00 2.32
2876 3163 7.387945 CGCGTAATTTGAAATAAAAACATCCC 58.612 34.615 0.00 0.00 0.00 3.85
2891 3198 3.496331 ACATCCCGAAGTCCACAATTTT 58.504 40.909 0.00 0.00 0.00 1.82
2897 3204 6.451393 TCCCGAAGTCCACAATTTTAAATTG 58.549 36.000 23.79 23.79 35.29 2.32
2979 3287 8.081208 TGCACAATACAACAAACAAATAATGG 57.919 30.769 0.00 0.00 0.00 3.16
2981 3290 8.934825 GCACAATACAACAAACAAATAATGGAT 58.065 29.630 0.00 0.00 0.00 3.41
3034 3344 6.378564 CAGTACTCCTCCATCAAGTCTTTCTA 59.621 42.308 0.00 0.00 0.00 2.10
3063 3397 9.492973 AAATTTCATTTTACACCTTCATGGAAG 57.507 29.630 0.00 0.00 39.17 3.46
3084 3418 3.008485 AGGTCTGAATCGCTCCTCTTTTT 59.992 43.478 0.00 0.00 0.00 1.94
3085 3419 3.372514 GGTCTGAATCGCTCCTCTTTTTC 59.627 47.826 0.00 0.00 0.00 2.29
3086 3420 4.249661 GTCTGAATCGCTCCTCTTTTTCT 58.750 43.478 0.00 0.00 0.00 2.52
3087 3421 4.328712 GTCTGAATCGCTCCTCTTTTTCTC 59.671 45.833 0.00 0.00 0.00 2.87
3089 3423 4.836825 TGAATCGCTCCTCTTTTTCTCAT 58.163 39.130 0.00 0.00 0.00 2.90
3096 3431 5.106396 CGCTCCTCTTTTTCTCATTGACATT 60.106 40.000 0.00 0.00 0.00 2.71
3100 3435 8.327941 TCCTCTTTTTCTCATTGACATTACAG 57.672 34.615 0.00 0.00 0.00 2.74
3130 3465 5.128205 CCATGAGATCATAGAAGGTGCAAA 58.872 41.667 0.00 0.00 34.26 3.68
3131 3466 5.238868 CCATGAGATCATAGAAGGTGCAAAG 59.761 44.000 0.00 0.00 34.26 2.77
3153 3488 4.222145 AGCAAATCTTGTCCATGCTCATTT 59.778 37.500 0.00 0.00 43.43 2.32
3162 3497 6.288941 TGTCCATGCTCATTTTCAATGATT 57.711 33.333 0.00 0.00 0.00 2.57
3165 3500 9.134055 TGTCCATGCTCATTTTCAATGATTATA 57.866 29.630 0.00 0.00 0.00 0.98
3283 3622 7.919385 AAATACCAAATGCCCTCTCAATATT 57.081 32.000 0.00 0.00 0.00 1.28
3291 3630 7.588497 AATGCCCTCTCAATATTTTTCCTAC 57.412 36.000 0.00 0.00 0.00 3.18
3295 3634 7.073725 TGCCCTCTCAATATTTTTCCTACCTAT 59.926 37.037 0.00 0.00 0.00 2.57
3306 3646 3.414759 TCCTACCTATCCCTTGAGCAA 57.585 47.619 0.00 0.00 0.00 3.91
3338 3678 5.483811 GAGAGTTCTTTCTTACCTTGAGGG 58.516 45.833 1.54 0.00 40.27 4.30
3339 3679 4.287326 AGAGTTCTTTCTTACCTTGAGGGG 59.713 45.833 1.54 0.00 40.27 4.79
3340 3680 3.330998 AGTTCTTTCTTACCTTGAGGGGG 59.669 47.826 1.54 0.00 40.27 5.40
3379 3719 2.960384 TGACAAAAGTACTCCACCTCGA 59.040 45.455 0.00 0.00 0.00 4.04
3396 3736 2.824936 CTCGAGTAGATCCCATCTGCAT 59.175 50.000 3.62 0.00 43.41 3.96
3419 3759 7.256048 GCATGGTAGTACCCATAGTTGTATGTA 60.256 40.741 16.91 0.00 43.46 2.29
3507 3849 1.521580 TCAAGCACATTGATGTCGCA 58.478 45.000 15.64 0.00 43.09 5.10
3508 3850 2.086094 TCAAGCACATTGATGTCGCAT 58.914 42.857 15.64 6.13 43.09 4.73
3509 3851 2.096335 TCAAGCACATTGATGTCGCATC 59.904 45.455 15.64 11.42 43.09 3.91
3510 3852 1.019673 AGCACATTGATGTCGCATCC 58.980 50.000 14.48 2.07 39.39 3.51
3511 3853 1.019673 GCACATTGATGTCGCATCCT 58.980 50.000 14.48 3.06 39.39 3.24
3512 3854 2.158914 AGCACATTGATGTCGCATCCTA 60.159 45.455 14.48 6.02 39.39 2.94
3513 3855 2.613595 GCACATTGATGTCGCATCCTAA 59.386 45.455 14.48 6.33 39.39 2.69
3514 3856 3.065233 GCACATTGATGTCGCATCCTAAA 59.935 43.478 14.48 5.78 39.39 1.85
3515 3857 4.438608 GCACATTGATGTCGCATCCTAAAA 60.439 41.667 14.48 5.51 39.39 1.52
3516 3858 5.734220 GCACATTGATGTCGCATCCTAAAAT 60.734 40.000 14.48 7.11 39.39 1.82
3517 3859 6.513230 GCACATTGATGTCGCATCCTAAAATA 60.513 38.462 14.48 0.00 39.39 1.40
3518 3860 7.587629 CACATTGATGTCGCATCCTAAAATAT 58.412 34.615 14.48 0.00 39.39 1.28
3519 3861 7.536281 CACATTGATGTCGCATCCTAAAATATG 59.464 37.037 14.48 6.15 39.39 1.78
3520 3862 7.445096 ACATTGATGTCGCATCCTAAAATATGA 59.555 33.333 14.48 0.00 35.87 2.15
3521 3863 7.800155 TTGATGTCGCATCCTAAAATATGAA 57.200 32.000 14.48 0.06 0.00 2.57
3522 3864 7.984422 TGATGTCGCATCCTAAAATATGAAT 57.016 32.000 14.48 0.00 0.00 2.57
3523 3865 7.809665 TGATGTCGCATCCTAAAATATGAATG 58.190 34.615 14.48 0.00 0.00 2.67
3524 3866 6.000891 TGTCGCATCCTAAAATATGAATGC 57.999 37.500 0.00 0.00 0.00 3.56
3525 3867 5.048782 TGTCGCATCCTAAAATATGAATGCC 60.049 40.000 0.00 0.00 0.00 4.40
3526 3868 5.048782 GTCGCATCCTAAAATATGAATGCCA 60.049 40.000 0.00 0.00 0.00 4.92
3527 3869 5.534278 TCGCATCCTAAAATATGAATGCCAA 59.466 36.000 0.00 0.00 0.00 4.52
3528 3870 6.040278 TCGCATCCTAAAATATGAATGCCAAA 59.960 34.615 0.00 0.00 0.00 3.28
3529 3871 6.869913 CGCATCCTAAAATATGAATGCCAAAT 59.130 34.615 0.00 0.00 0.00 2.32
3530 3872 7.385752 CGCATCCTAAAATATGAATGCCAAATT 59.614 33.333 0.00 0.00 0.00 1.82
3531 3873 9.059260 GCATCCTAAAATATGAATGCCAAATTT 57.941 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
309 310 3.996124 CGCAGAGGGGGATAGCGG 61.996 72.222 0.00 0.00 44.20 5.52
321 322 3.838271 CTAAGAGGCGGGCGCAGA 61.838 66.667 10.83 0.00 44.11 4.26
322 323 3.838271 TCTAAGAGGCGGGCGCAG 61.838 66.667 10.83 3.20 44.11 5.18
323 324 4.143333 GTCTAAGAGGCGGGCGCA 62.143 66.667 10.83 0.00 44.11 6.09
324 325 4.143333 TGTCTAAGAGGCGGGCGC 62.143 66.667 0.00 0.00 41.06 6.53
325 326 2.202756 GTGTCTAAGAGGCGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
326 327 2.202756 CGTGTCTAAGAGGCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
327 328 2.202756 GCGTGTCTAAGAGGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
328 329 2.202756 GGCGTGTCTAAGAGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
329 330 2.579787 CGGCGTGTCTAAGAGGCG 60.580 66.667 0.00 0.00 45.35 5.52
330 331 2.886124 GCGGCGTGTCTAAGAGGC 60.886 66.667 9.37 0.00 0.00 4.70
331 332 2.579787 CGCGGCGTGTCTAAGAGG 60.580 66.667 15.36 0.00 0.00 3.69
332 333 1.868251 GACGCGGCGTGTCTAAGAG 60.868 63.158 37.76 9.49 41.37 2.85
333 334 2.177531 GACGCGGCGTGTCTAAGA 59.822 61.111 37.76 0.00 41.37 2.10
334 335 3.238241 CGACGCGGCGTGTCTAAG 61.238 66.667 39.61 26.26 41.37 2.18
335 336 4.764336 CCGACGCGGCGTGTCTAA 62.764 66.667 39.61 0.00 41.37 2.10
348 349 3.404141 GAGCAGAGCCGTCTCCGAC 62.404 68.421 0.00 0.00 40.22 4.79
349 350 3.134792 GAGCAGAGCCGTCTCCGA 61.135 66.667 0.00 0.00 40.22 4.55
350 351 4.200283 GGAGCAGAGCCGTCTCCG 62.200 72.222 0.00 0.00 40.22 4.63
351 352 2.757917 AGGAGCAGAGCCGTCTCC 60.758 66.667 0.00 0.00 45.11 3.71
352 353 2.781158 GGAGGAGCAGAGCCGTCTC 61.781 68.421 0.00 0.00 39.65 3.36
353 354 2.757917 GGAGGAGCAGAGCCGTCT 60.758 66.667 0.00 0.00 0.00 4.18
354 355 3.844090 GGGAGGAGCAGAGCCGTC 61.844 72.222 0.00 0.00 0.00 4.79
357 358 4.814041 AGGGGGAGGAGCAGAGCC 62.814 72.222 0.00 0.00 0.00 4.70
358 359 2.690510 AAGGGGGAGGAGCAGAGC 60.691 66.667 0.00 0.00 0.00 4.09
359 360 2.069430 GGAAGGGGGAGGAGCAGAG 61.069 68.421 0.00 0.00 0.00 3.35
360 361 2.041265 GGAAGGGGGAGGAGCAGA 59.959 66.667 0.00 0.00 0.00 4.26
361 362 3.474570 CGGAAGGGGGAGGAGCAG 61.475 72.222 0.00 0.00 0.00 4.24
362 363 4.332543 ACGGAAGGGGGAGGAGCA 62.333 66.667 0.00 0.00 0.00 4.26
363 364 3.787001 CACGGAAGGGGGAGGAGC 61.787 72.222 0.00 0.00 0.00 4.70
364 365 3.787001 GCACGGAAGGGGGAGGAG 61.787 72.222 0.00 0.00 32.68 3.69
371 372 4.431131 ATGCTGGGCACGGAAGGG 62.431 66.667 0.00 0.00 43.04 3.95
372 373 2.825836 GATGCTGGGCACGGAAGG 60.826 66.667 0.00 0.00 43.04 3.46
373 374 2.825836 GGATGCTGGGCACGGAAG 60.826 66.667 0.00 0.00 43.04 3.46
374 375 3.329542 GAGGATGCTGGGCACGGAA 62.330 63.158 0.00 0.00 43.04 4.30
375 376 3.785859 GAGGATGCTGGGCACGGA 61.786 66.667 0.00 0.00 43.04 4.69
377 378 4.147449 TCGAGGATGCTGGGCACG 62.147 66.667 0.00 0.00 43.04 5.34
378 379 2.202987 CTCGAGGATGCTGGGCAC 60.203 66.667 3.91 0.00 43.04 5.01
379 380 4.166888 GCTCGAGGATGCTGGGCA 62.167 66.667 15.58 0.00 44.86 5.36
381 382 4.598894 CCGCTCGAGGATGCTGGG 62.599 72.222 15.58 0.00 0.00 4.45
383 384 4.218578 AGCCGCTCGAGGATGCTG 62.219 66.667 15.58 0.00 0.00 4.41
384 385 3.910490 GAGCCGCTCGAGGATGCT 61.910 66.667 15.58 9.12 34.40 3.79
385 386 4.959596 GGAGCCGCTCGAGGATGC 62.960 72.222 15.58 0.00 0.00 3.91
386 387 4.637489 CGGAGCCGCTCGAGGATG 62.637 72.222 15.58 0.00 0.00 3.51
399 400 1.794437 CGGTAGTTCGAGAAAGCGGAG 60.794 57.143 6.65 0.00 0.00 4.63
400 401 0.169672 CGGTAGTTCGAGAAAGCGGA 59.830 55.000 6.65 0.00 0.00 5.54
401 402 0.801067 CCGGTAGTTCGAGAAAGCGG 60.801 60.000 15.79 15.79 45.21 5.52
402 403 1.411493 GCCGGTAGTTCGAGAAAGCG 61.411 60.000 1.90 7.36 0.00 4.68
403 404 0.389426 TGCCGGTAGTTCGAGAAAGC 60.389 55.000 1.90 0.00 0.00 3.51
404 405 1.927174 CATGCCGGTAGTTCGAGAAAG 59.073 52.381 1.90 0.00 0.00 2.62
405 406 2.004583 CATGCCGGTAGTTCGAGAAA 57.995 50.000 1.90 0.00 0.00 2.52
406 407 0.459585 GCATGCCGGTAGTTCGAGAA 60.460 55.000 6.36 0.00 0.00 2.87
407 408 1.141019 GCATGCCGGTAGTTCGAGA 59.859 57.895 6.36 0.00 0.00 4.04
408 409 1.883084 GGCATGCCGGTAGTTCGAG 60.883 63.158 23.48 0.00 0.00 4.04
409 410 2.185867 GGCATGCCGGTAGTTCGA 59.814 61.111 23.48 0.00 0.00 3.71
420 421 4.916293 TGGATCTCGGCGGCATGC 62.916 66.667 9.90 9.90 45.38 4.06
421 422 2.969238 GTGGATCTCGGCGGCATG 60.969 66.667 10.53 0.07 0.00 4.06
422 423 4.592192 CGTGGATCTCGGCGGCAT 62.592 66.667 10.53 0.00 0.00 4.40
427 428 4.899239 CAGCCCGTGGATCTCGGC 62.899 72.222 19.13 12.52 45.71 5.54
464 465 4.856801 CCCCAACCAGATCGCCGG 62.857 72.222 0.00 0.00 0.00 6.13
468 469 2.608970 ATTCCGCCCCAACCAGATCG 62.609 60.000 0.00 0.00 0.00 3.69
469 470 0.819666 GATTCCGCCCCAACCAGATC 60.820 60.000 0.00 0.00 0.00 2.75
470 471 1.227383 GATTCCGCCCCAACCAGAT 59.773 57.895 0.00 0.00 0.00 2.90
471 472 2.674754 GATTCCGCCCCAACCAGA 59.325 61.111 0.00 0.00 0.00 3.86
472 473 2.608970 ATCGATTCCGCCCCAACCAG 62.609 60.000 0.00 0.00 35.37 4.00
473 474 2.204865 AATCGATTCCGCCCCAACCA 62.205 55.000 4.39 0.00 35.37 3.67
474 475 1.035385 AAATCGATTCCGCCCCAACC 61.035 55.000 11.83 0.00 35.37 3.77
475 476 0.100503 CAAATCGATTCCGCCCCAAC 59.899 55.000 11.83 0.00 35.37 3.77
476 477 0.322997 ACAAATCGATTCCGCCCCAA 60.323 50.000 11.83 0.00 35.37 4.12
477 478 1.029408 CACAAATCGATTCCGCCCCA 61.029 55.000 11.83 0.00 35.37 4.96
478 479 1.029947 ACACAAATCGATTCCGCCCC 61.030 55.000 11.83 0.00 35.37 5.80
479 480 0.098728 CACACAAATCGATTCCGCCC 59.901 55.000 11.83 0.00 35.37 6.13
480 481 0.098728 CCACACAAATCGATTCCGCC 59.901 55.000 11.83 0.00 35.37 6.13
481 482 0.802494 ACCACACAAATCGATTCCGC 59.198 50.000 11.83 0.00 35.37 5.54
482 483 1.060553 CGACCACACAAATCGATTCCG 59.939 52.381 11.83 8.47 38.10 4.30
483 484 1.396996 CCGACCACACAAATCGATTCC 59.603 52.381 11.83 0.00 38.10 3.01
484 485 1.396996 CCCGACCACACAAATCGATTC 59.603 52.381 11.83 0.00 38.10 2.52
485 486 1.002659 TCCCGACCACACAAATCGATT 59.997 47.619 4.39 4.39 38.10 3.34
486 487 0.611200 TCCCGACCACACAAATCGAT 59.389 50.000 0.00 0.00 38.10 3.59
487 488 0.611200 ATCCCGACCACACAAATCGA 59.389 50.000 0.00 0.00 38.10 3.59
488 489 0.726827 CATCCCGACCACACAAATCG 59.273 55.000 0.00 0.00 35.62 3.34
489 490 1.094785 CCATCCCGACCACACAAATC 58.905 55.000 0.00 0.00 0.00 2.17
490 491 0.695924 TCCATCCCGACCACACAAAT 59.304 50.000 0.00 0.00 0.00 2.32
491 492 0.474614 TTCCATCCCGACCACACAAA 59.525 50.000 0.00 0.00 0.00 2.83
492 493 0.036164 CTTCCATCCCGACCACACAA 59.964 55.000 0.00 0.00 0.00 3.33
493 494 0.834261 TCTTCCATCCCGACCACACA 60.834 55.000 0.00 0.00 0.00 3.72
494 495 0.108138 CTCTTCCATCCCGACCACAC 60.108 60.000 0.00 0.00 0.00 3.82
495 496 0.252057 TCTCTTCCATCCCGACCACA 60.252 55.000 0.00 0.00 0.00 4.17
496 497 0.902531 TTCTCTTCCATCCCGACCAC 59.097 55.000 0.00 0.00 0.00 4.16
497 498 1.651737 TTTCTCTTCCATCCCGACCA 58.348 50.000 0.00 0.00 0.00 4.02
498 499 2.781681 TTTTCTCTTCCATCCCGACC 57.218 50.000 0.00 0.00 0.00 4.79
499 500 3.935828 CTCTTTTTCTCTTCCATCCCGAC 59.064 47.826 0.00 0.00 0.00 4.79
500 501 3.583086 ACTCTTTTTCTCTTCCATCCCGA 59.417 43.478 0.00 0.00 0.00 5.14
501 502 3.686726 CACTCTTTTTCTCTTCCATCCCG 59.313 47.826 0.00 0.00 0.00 5.14
502 503 4.013050 CCACTCTTTTTCTCTTCCATCCC 58.987 47.826 0.00 0.00 0.00 3.85
503 504 4.697828 GTCCACTCTTTTTCTCTTCCATCC 59.302 45.833 0.00 0.00 0.00 3.51
504 505 5.555966 AGTCCACTCTTTTTCTCTTCCATC 58.444 41.667 0.00 0.00 0.00 3.51
505 506 5.574970 AGTCCACTCTTTTTCTCTTCCAT 57.425 39.130 0.00 0.00 0.00 3.41
506 507 5.602978 ACTAGTCCACTCTTTTTCTCTTCCA 59.397 40.000 0.00 0.00 0.00 3.53
507 508 6.014925 AGACTAGTCCACTCTTTTTCTCTTCC 60.015 42.308 19.38 0.00 0.00 3.46
508 509 6.988522 AGACTAGTCCACTCTTTTTCTCTTC 58.011 40.000 19.38 0.00 0.00 2.87
509 510 6.987403 AGACTAGTCCACTCTTTTTCTCTT 57.013 37.500 19.38 0.00 0.00 2.85
510 511 7.463431 TCTAGACTAGTCCACTCTTTTTCTCT 58.537 38.462 19.38 0.00 0.00 3.10
511 512 7.690952 TCTAGACTAGTCCACTCTTTTTCTC 57.309 40.000 19.38 0.00 0.00 2.87
512 513 8.480133 TTTCTAGACTAGTCCACTCTTTTTCT 57.520 34.615 19.38 0.00 0.00 2.52
513 514 9.145865 CATTTCTAGACTAGTCCACTCTTTTTC 57.854 37.037 19.38 0.00 0.00 2.29
514 515 8.097662 CCATTTCTAGACTAGTCCACTCTTTTT 58.902 37.037 19.38 0.00 0.00 1.94
515 516 7.455008 TCCATTTCTAGACTAGTCCACTCTTTT 59.545 37.037 19.38 0.74 0.00 2.27
516 517 6.954684 TCCATTTCTAGACTAGTCCACTCTTT 59.045 38.462 19.38 1.50 0.00 2.52
517 518 6.494952 TCCATTTCTAGACTAGTCCACTCTT 58.505 40.000 19.38 2.25 0.00 2.85
518 519 6.080969 TCCATTTCTAGACTAGTCCACTCT 57.919 41.667 19.38 3.00 0.00 3.24
519 520 6.969993 ATCCATTTCTAGACTAGTCCACTC 57.030 41.667 19.38 0.00 0.00 3.51
520 521 7.504238 CACTATCCATTTCTAGACTAGTCCACT 59.496 40.741 19.38 3.77 0.00 4.00
521 522 7.502895 TCACTATCCATTTCTAGACTAGTCCAC 59.497 40.741 19.38 0.00 0.00 4.02
522 523 7.583625 TCACTATCCATTTCTAGACTAGTCCA 58.416 38.462 19.38 4.90 0.00 4.02
523 524 8.466617 TTCACTATCCATTTCTAGACTAGTCC 57.533 38.462 19.38 1.81 0.00 3.85
524 525 9.127277 ACTTCACTATCCATTTCTAGACTAGTC 57.873 37.037 15.41 15.41 0.00 2.59
525 526 8.908903 CACTTCACTATCCATTTCTAGACTAGT 58.091 37.037 9.33 0.00 0.00 2.57
526 527 8.356657 CCACTTCACTATCCATTTCTAGACTAG 58.643 40.741 2.81 2.81 0.00 2.57
527 528 7.287927 CCCACTTCACTATCCATTTCTAGACTA 59.712 40.741 0.00 0.00 0.00 2.59
528 529 6.098982 CCCACTTCACTATCCATTTCTAGACT 59.901 42.308 0.00 0.00 0.00 3.24
529 530 6.284459 CCCACTTCACTATCCATTTCTAGAC 58.716 44.000 0.00 0.00 0.00 2.59
530 531 5.163301 GCCCACTTCACTATCCATTTCTAGA 60.163 44.000 0.00 0.00 0.00 2.43
531 532 5.059833 GCCCACTTCACTATCCATTTCTAG 58.940 45.833 0.00 0.00 0.00 2.43
532 533 4.721776 AGCCCACTTCACTATCCATTTCTA 59.278 41.667 0.00 0.00 0.00 2.10
533 534 3.525199 AGCCCACTTCACTATCCATTTCT 59.475 43.478 0.00 0.00 0.00 2.52
534 535 3.629398 CAGCCCACTTCACTATCCATTTC 59.371 47.826 0.00 0.00 0.00 2.17
535 536 3.010584 ACAGCCCACTTCACTATCCATTT 59.989 43.478 0.00 0.00 0.00 2.32
536 537 2.578021 ACAGCCCACTTCACTATCCATT 59.422 45.455 0.00 0.00 0.00 3.16
537 538 2.171448 GACAGCCCACTTCACTATCCAT 59.829 50.000 0.00 0.00 0.00 3.41
538 539 1.555075 GACAGCCCACTTCACTATCCA 59.445 52.381 0.00 0.00 0.00 3.41
539 540 1.834263 AGACAGCCCACTTCACTATCC 59.166 52.381 0.00 0.00 0.00 2.59
540 541 2.497675 TGAGACAGCCCACTTCACTATC 59.502 50.000 0.00 0.00 0.00 2.08
541 542 2.234908 GTGAGACAGCCCACTTCACTAT 59.765 50.000 0.00 0.00 0.00 2.12
542 543 1.618837 GTGAGACAGCCCACTTCACTA 59.381 52.381 0.00 0.00 0.00 2.74
543 544 0.394565 GTGAGACAGCCCACTTCACT 59.605 55.000 0.00 0.00 0.00 3.41
544 545 0.603975 GGTGAGACAGCCCACTTCAC 60.604 60.000 0.00 0.00 33.99 3.18
545 546 1.754745 GGTGAGACAGCCCACTTCA 59.245 57.895 0.00 0.00 33.99 3.02
546 547 1.374758 CGGTGAGACAGCCCACTTC 60.375 63.158 0.00 0.00 33.99 3.01
547 548 2.743718 CGGTGAGACAGCCCACTT 59.256 61.111 0.00 0.00 33.99 3.16
548 549 4.008933 GCGGTGAGACAGCCCACT 62.009 66.667 0.00 0.00 33.12 4.00
558 559 1.071605 CCTTTTTCTCTCGCGGTGAG 58.928 55.000 19.10 19.10 46.72 3.51
559 560 0.391597 ACCTTTTTCTCTCGCGGTGA 59.608 50.000 6.13 4.24 0.00 4.02
560 561 1.194772 GAACCTTTTTCTCTCGCGGTG 59.805 52.381 6.13 0.00 0.00 4.94
561 562 1.509703 GAACCTTTTTCTCTCGCGGT 58.490 50.000 6.13 0.00 0.00 5.68
562 563 0.438830 CGAACCTTTTTCTCTCGCGG 59.561 55.000 6.13 0.00 0.00 6.46
563 564 0.179248 GCGAACCTTTTTCTCTCGCG 60.179 55.000 0.00 0.00 44.45 5.87
564 565 3.659382 GCGAACCTTTTTCTCTCGC 57.341 52.632 0.00 0.00 46.69 5.03
565 566 0.179248 GCGCGAACCTTTTTCTCTCG 60.179 55.000 12.10 0.00 0.00 4.04
566 567 0.166161 GGCGCGAACCTTTTTCTCTC 59.834 55.000 12.10 0.00 0.00 3.20
567 568 1.566018 CGGCGCGAACCTTTTTCTCT 61.566 55.000 12.10 0.00 0.00 3.10
568 569 1.154469 CGGCGCGAACCTTTTTCTC 60.154 57.895 12.10 0.00 0.00 2.87
569 570 0.953960 ATCGGCGCGAACCTTTTTCT 60.954 50.000 12.10 0.00 39.99 2.52
570 571 0.520619 GATCGGCGCGAACCTTTTTC 60.521 55.000 12.10 0.00 39.99 2.29
571 572 1.500396 GATCGGCGCGAACCTTTTT 59.500 52.632 12.10 0.00 39.99 1.94
572 573 2.396157 GGATCGGCGCGAACCTTTT 61.396 57.895 12.10 0.00 43.75 2.27
573 574 2.818274 GGATCGGCGCGAACCTTT 60.818 61.111 12.10 0.00 43.75 3.11
574 575 4.832608 GGGATCGGCGCGAACCTT 62.833 66.667 12.10 0.00 45.82 3.50
582 583 3.528370 AAGGACGAGGGATCGGCG 61.528 66.667 0.00 0.00 43.10 6.46
583 584 2.107141 CAAGGACGAGGGATCGGC 59.893 66.667 2.46 0.00 41.09 5.54
584 585 2.107141 GCAAGGACGAGGGATCGG 59.893 66.667 2.46 0.00 37.45 4.18
585 586 2.278857 CGCAAGGACGAGGGATCG 60.279 66.667 0.00 0.00 39.31 3.69
586 587 0.806492 GTTCGCAAGGACGAGGGATC 60.806 60.000 0.00 0.00 44.00 3.36
587 588 1.218316 GTTCGCAAGGACGAGGGAT 59.782 57.895 0.00 0.00 44.00 3.85
588 589 2.654877 GTTCGCAAGGACGAGGGA 59.345 61.111 0.00 0.00 44.00 4.20
595 596 0.103390 TCGTGAACTGTTCGCAAGGA 59.897 50.000 27.62 16.97 40.11 3.36
596 597 0.232303 GTCGTGAACTGTTCGCAAGG 59.768 55.000 27.62 15.27 40.11 3.61
597 598 0.232303 GGTCGTGAACTGTTCGCAAG 59.768 55.000 27.62 15.86 40.11 4.01
598 599 1.484227 CGGTCGTGAACTGTTCGCAA 61.484 55.000 27.62 12.21 40.11 4.85
599 600 1.947146 CGGTCGTGAACTGTTCGCA 60.947 57.895 27.62 15.42 40.11 5.10
600 601 1.007336 ATCGGTCGTGAACTGTTCGC 61.007 55.000 21.04 21.04 35.58 4.70
601 602 0.708370 CATCGGTCGTGAACTGTTCG 59.292 55.000 15.18 5.74 35.58 3.95
602 603 1.719780 GTCATCGGTCGTGAACTGTTC 59.280 52.381 13.49 13.49 35.58 3.18
603 604 1.779569 GTCATCGGTCGTGAACTGTT 58.220 50.000 0.00 0.00 35.58 3.16
604 605 0.386858 CGTCATCGGTCGTGAACTGT 60.387 55.000 0.00 0.00 35.58 3.55
605 606 0.386858 ACGTCATCGGTCGTGAACTG 60.387 55.000 0.00 0.00 41.85 3.16
606 607 1.954528 ACGTCATCGGTCGTGAACT 59.045 52.632 0.00 0.00 41.85 3.01
607 608 4.546637 ACGTCATCGGTCGTGAAC 57.453 55.556 0.00 0.00 41.85 3.18
611 612 4.430765 GGCCACGTCATCGGTCGT 62.431 66.667 0.00 0.00 41.85 4.34
612 613 4.429212 TGGCCACGTCATCGGTCG 62.429 66.667 0.00 0.00 41.85 4.79
613 614 2.813908 GTGGCCACGTCATCGGTC 60.814 66.667 22.49 0.00 41.85 4.79
623 624 1.149987 TGACGTAAATTCGTGGCCAC 58.850 50.000 26.78 26.78 44.21 5.01
624 625 1.880271 TTGACGTAAATTCGTGGCCA 58.120 45.000 0.00 0.00 44.21 5.36
625 626 2.973419 TTTGACGTAAATTCGTGGCC 57.027 45.000 0.00 0.00 44.21 5.36
626 627 6.032042 CACTATTTTTGACGTAAATTCGTGGC 59.968 38.462 0.42 0.00 44.21 5.01
627 628 6.032042 GCACTATTTTTGACGTAAATTCGTGG 59.968 38.462 17.07 7.34 44.21 4.94
628 629 6.236582 CGCACTATTTTTGACGTAAATTCGTG 60.237 38.462 14.03 14.03 44.21 4.35
629 630 5.786574 CGCACTATTTTTGACGTAAATTCGT 59.213 36.000 0.42 0.00 46.88 3.85
630 631 5.224313 CCGCACTATTTTTGACGTAAATTCG 59.776 40.000 0.42 1.46 0.00 3.34
631 632 5.510323 CCCGCACTATTTTTGACGTAAATTC 59.490 40.000 0.42 0.00 0.00 2.17
632 633 5.048573 ACCCGCACTATTTTTGACGTAAATT 60.049 36.000 0.42 0.00 0.00 1.82
633 634 4.456566 ACCCGCACTATTTTTGACGTAAAT 59.543 37.500 0.00 0.00 0.00 1.40
634 635 3.814283 ACCCGCACTATTTTTGACGTAAA 59.186 39.130 0.00 0.00 0.00 2.01
635 636 3.186817 CACCCGCACTATTTTTGACGTAA 59.813 43.478 0.00 0.00 0.00 3.18
636 637 2.737783 CACCCGCACTATTTTTGACGTA 59.262 45.455 0.00 0.00 0.00 3.57
637 638 1.533731 CACCCGCACTATTTTTGACGT 59.466 47.619 0.00 0.00 0.00 4.34
638 639 1.801771 TCACCCGCACTATTTTTGACG 59.198 47.619 0.00 0.00 0.00 4.35
639 640 3.438781 TGATCACCCGCACTATTTTTGAC 59.561 43.478 0.00 0.00 0.00 3.18
640 641 3.680490 TGATCACCCGCACTATTTTTGA 58.320 40.909 0.00 0.00 0.00 2.69
641 642 3.689161 TCTGATCACCCGCACTATTTTTG 59.311 43.478 0.00 0.00 0.00 2.44
642 643 3.689649 GTCTGATCACCCGCACTATTTTT 59.310 43.478 0.00 0.00 0.00 1.94
643 644 3.270877 GTCTGATCACCCGCACTATTTT 58.729 45.455 0.00 0.00 0.00 1.82
644 645 2.738643 CGTCTGATCACCCGCACTATTT 60.739 50.000 0.00 0.00 0.00 1.40
645 646 1.202417 CGTCTGATCACCCGCACTATT 60.202 52.381 0.00 0.00 0.00 1.73
646 647 0.385751 CGTCTGATCACCCGCACTAT 59.614 55.000 0.00 0.00 0.00 2.12
647 648 0.678684 TCGTCTGATCACCCGCACTA 60.679 55.000 0.00 0.00 0.00 2.74
648 649 1.323271 ATCGTCTGATCACCCGCACT 61.323 55.000 0.00 0.00 0.00 4.40
649 650 1.141881 ATCGTCTGATCACCCGCAC 59.858 57.895 0.00 0.00 0.00 5.34
650 651 1.141665 CATCGTCTGATCACCCGCA 59.858 57.895 0.00 0.00 30.49 5.69
651 652 1.592669 CCATCGTCTGATCACCCGC 60.593 63.158 0.00 0.00 30.49 6.13
652 653 0.676184 ATCCATCGTCTGATCACCCG 59.324 55.000 0.00 0.00 30.49 5.28
653 654 1.688735 TCATCCATCGTCTGATCACCC 59.311 52.381 0.00 0.00 30.49 4.61
654 655 3.388308 CTTCATCCATCGTCTGATCACC 58.612 50.000 0.00 0.00 30.49 4.02
655 656 2.799412 GCTTCATCCATCGTCTGATCAC 59.201 50.000 0.00 0.00 30.49 3.06
656 657 2.544486 CGCTTCATCCATCGTCTGATCA 60.544 50.000 0.00 0.00 30.49 2.92
657 658 2.057316 CGCTTCATCCATCGTCTGATC 58.943 52.381 0.00 0.00 30.49 2.92
658 659 1.410517 ACGCTTCATCCATCGTCTGAT 59.589 47.619 0.00 0.00 34.28 2.90
659 660 0.817654 ACGCTTCATCCATCGTCTGA 59.182 50.000 0.00 0.00 0.00 3.27
660 661 1.590238 GAACGCTTCATCCATCGTCTG 59.410 52.381 0.00 0.00 33.72 3.51
661 662 1.799181 CGAACGCTTCATCCATCGTCT 60.799 52.381 0.00 0.00 33.72 4.18
662 663 0.572590 CGAACGCTTCATCCATCGTC 59.427 55.000 0.00 0.00 33.72 4.20
663 664 0.806102 CCGAACGCTTCATCCATCGT 60.806 55.000 0.00 0.00 36.67 3.73
664 665 0.527600 TCCGAACGCTTCATCCATCG 60.528 55.000 0.00 0.00 0.00 3.84
665 666 1.327764 GTTCCGAACGCTTCATCCATC 59.672 52.381 0.00 0.00 0.00 3.51
666 667 1.369625 GTTCCGAACGCTTCATCCAT 58.630 50.000 0.00 0.00 0.00 3.41
667 668 0.672401 GGTTCCGAACGCTTCATCCA 60.672 55.000 5.19 0.00 0.00 3.41
668 669 0.391263 AGGTTCCGAACGCTTCATCC 60.391 55.000 5.19 0.00 0.00 3.51
669 670 0.721718 CAGGTTCCGAACGCTTCATC 59.278 55.000 5.19 0.00 0.00 2.92
670 671 0.320374 TCAGGTTCCGAACGCTTCAT 59.680 50.000 5.19 0.00 0.00 2.57
671 672 0.599204 GTCAGGTTCCGAACGCTTCA 60.599 55.000 5.19 0.00 0.00 3.02
672 673 1.615107 CGTCAGGTTCCGAACGCTTC 61.615 60.000 5.19 0.00 0.00 3.86
673 674 1.663702 CGTCAGGTTCCGAACGCTT 60.664 57.895 5.19 0.00 0.00 4.68
674 675 2.049433 CGTCAGGTTCCGAACGCT 60.049 61.111 5.19 1.43 0.00 5.07
675 676 1.952635 AACGTCAGGTTCCGAACGC 60.953 57.895 15.10 0.00 38.64 4.84
676 677 4.331356 AACGTCAGGTTCCGAACG 57.669 55.556 14.10 14.10 40.77 3.95
683 684 3.920196 ACGCCCGAACGTCAGGTT 61.920 61.111 8.22 0.00 44.43 3.50
690 691 1.464521 GGAAACAATAACGCCCGAACG 60.465 52.381 0.00 0.00 39.50 3.95
691 692 1.464521 CGGAAACAATAACGCCCGAAC 60.465 52.381 0.00 0.00 39.31 3.95
692 693 0.797542 CGGAAACAATAACGCCCGAA 59.202 50.000 0.00 0.00 39.31 4.30
693 694 0.320596 ACGGAAACAATAACGCCCGA 60.321 50.000 0.00 0.00 40.10 5.14
694 695 0.518195 AACGGAAACAATAACGCCCG 59.482 50.000 0.00 0.00 42.30 6.13
695 696 2.710220 AAACGGAAACAATAACGCCC 57.290 45.000 0.00 0.00 0.00 6.13
696 697 7.793907 TTATAAAAACGGAAACAATAACGCC 57.206 32.000 0.00 0.00 0.00 5.68
697 698 8.367396 CCTTTATAAAAACGGAAACAATAACGC 58.633 33.333 0.00 0.00 0.00 4.84
698 699 8.367396 GCCTTTATAAAAACGGAAACAATAACG 58.633 33.333 6.23 0.00 0.00 3.18
699 700 8.649841 GGCCTTTATAAAAACGGAAACAATAAC 58.350 33.333 0.00 0.00 0.00 1.89
700 701 8.365647 TGGCCTTTATAAAAACGGAAACAATAA 58.634 29.630 3.32 0.00 0.00 1.40
701 702 7.893658 TGGCCTTTATAAAAACGGAAACAATA 58.106 30.769 3.32 0.00 0.00 1.90
702 703 6.760291 TGGCCTTTATAAAAACGGAAACAAT 58.240 32.000 3.32 0.00 0.00 2.71
703 704 6.158023 TGGCCTTTATAAAAACGGAAACAA 57.842 33.333 3.32 0.00 0.00 2.83
704 705 5.279056 CCTGGCCTTTATAAAAACGGAAACA 60.279 40.000 3.32 2.05 0.00 2.83
705 706 5.165676 CCTGGCCTTTATAAAAACGGAAAC 58.834 41.667 3.32 0.00 0.00 2.78
706 707 4.833938 ACCTGGCCTTTATAAAAACGGAAA 59.166 37.500 3.32 0.00 0.00 3.13
707 708 4.218852 CACCTGGCCTTTATAAAAACGGAA 59.781 41.667 3.32 0.00 0.00 4.30
708 709 3.759618 CACCTGGCCTTTATAAAAACGGA 59.240 43.478 3.32 0.00 0.00 4.69
709 710 3.508402 ACACCTGGCCTTTATAAAAACGG 59.492 43.478 3.32 0.00 0.00 4.44
710 711 4.776795 ACACCTGGCCTTTATAAAAACG 57.223 40.909 3.32 0.00 0.00 3.60
711 712 5.234752 CCAACACCTGGCCTTTATAAAAAC 58.765 41.667 3.32 0.00 38.76 2.43
712 713 5.476091 CCAACACCTGGCCTTTATAAAAA 57.524 39.130 3.32 0.00 38.76 1.94
725 726 1.079127 CGTCTAGGGCCAACACCTG 60.079 63.158 6.18 0.00 39.12 4.00
726 727 2.291043 CCGTCTAGGGCCAACACCT 61.291 63.158 6.18 0.00 42.15 4.00
727 728 2.120737 AACCGTCTAGGGCCAACACC 62.121 60.000 6.18 0.00 46.96 4.16
728 729 0.672711 GAACCGTCTAGGGCCAACAC 60.673 60.000 6.18 0.00 46.96 3.32
729 730 0.834687 AGAACCGTCTAGGGCCAACA 60.835 55.000 6.18 0.00 46.96 3.33
730 731 0.323957 AAGAACCGTCTAGGGCCAAC 59.676 55.000 6.18 0.00 46.96 3.77
731 732 1.941377 TAAGAACCGTCTAGGGCCAA 58.059 50.000 6.18 0.00 46.96 4.52
732 733 2.170012 ATAAGAACCGTCTAGGGCCA 57.830 50.000 6.18 0.00 46.96 5.36
733 734 5.681695 GCATATATAAGAACCGTCTAGGGCC 60.682 48.000 0.00 0.00 46.96 5.80
734 735 5.349809 GCATATATAAGAACCGTCTAGGGC 58.650 45.833 0.00 0.00 46.96 5.19
735 736 5.450137 CGGCATATATAAGAACCGTCTAGGG 60.450 48.000 7.54 0.00 46.96 3.53
737 738 6.093771 ACTCGGCATATATAAGAACCGTCTAG 59.906 42.308 12.79 8.02 41.33 2.43
738 739 5.942236 ACTCGGCATATATAAGAACCGTCTA 59.058 40.000 12.79 0.00 41.33 2.59
739 740 4.765856 ACTCGGCATATATAAGAACCGTCT 59.234 41.667 12.79 0.00 41.33 4.18
740 741 5.056894 ACTCGGCATATATAAGAACCGTC 57.943 43.478 12.79 0.00 41.33 4.79
741 742 4.082354 GGACTCGGCATATATAAGAACCGT 60.082 45.833 12.79 0.10 41.33 4.83
742 743 4.158025 AGGACTCGGCATATATAAGAACCG 59.842 45.833 8.85 8.85 41.92 4.44
841 842 4.720773 ACAGAGGTCTGATGAAAGATCCAT 59.279 41.667 13.99 0.00 46.59 3.41
850 852 0.252421 AGGGCACAGAGGTCTGATGA 60.252 55.000 13.99 0.00 46.59 2.92
989 995 3.068064 TCTCCATGGCGCGTCTGA 61.068 61.111 13.81 5.05 0.00 3.27
1013 1019 1.861575 GGATCACGCCGAAGAAGATTC 59.138 52.381 0.00 0.00 0.00 2.52
1801 1867 0.321996 GTCGTCTCTTTCCTGGGCTT 59.678 55.000 0.00 0.00 0.00 4.35
1994 2249 3.366396 TCGTAGAGCTTCTCCTGGATTT 58.634 45.455 0.00 0.00 0.00 2.17
2182 2453 2.382770 TGGCGCCCTTGGGTATCAT 61.383 57.895 26.77 0.00 0.00 2.45
2248 2519 3.254892 GAGAGAACTCTAACGGCCTTTG 58.745 50.000 4.40 0.00 40.61 2.77
2250 2521 1.826096 GGAGAGAACTCTAACGGCCTT 59.174 52.381 0.00 0.00 40.61 4.35
2586 2860 4.691685 TGAGTTATTAAAGGAAAGCGCGAA 59.308 37.500 12.10 0.00 0.00 4.70
2628 2915 9.703892 AGATGTTCTAATCGAGAATCAATTAGG 57.296 33.333 0.00 0.00 45.96 2.69
2641 2928 8.561932 TTCTTGTATTCGAGATGTTCTAATCG 57.438 34.615 0.00 0.00 34.45 3.34
2642 2929 9.737427 TCTTCTTGTATTCGAGATGTTCTAATC 57.263 33.333 3.39 0.00 34.45 1.75
2644 2931 9.521503 CATCTTCTTGTATTCGAGATGTTCTAA 57.478 33.333 0.00 0.00 39.07 2.10
2677 2964 8.501580 GGTACAACACCTAGTTTTACATCTTTC 58.498 37.037 0.00 0.00 42.46 2.62
2679 2966 7.974482 GGTACAACACCTAGTTTTACATCTT 57.026 36.000 0.00 0.00 42.46 2.40
2739 3026 6.894339 ATCAACGGTTGGAGTTATCTTTTT 57.106 33.333 19.91 0.00 0.00 1.94
2740 3027 9.847224 ATATATCAACGGTTGGAGTTATCTTTT 57.153 29.630 19.91 0.00 0.00 2.27
2747 3034 8.836413 CACAAATATATATCAACGGTTGGAGTT 58.164 33.333 19.91 6.44 0.00 3.01
2748 3035 8.208224 TCACAAATATATATCAACGGTTGGAGT 58.792 33.333 19.91 9.65 0.00 3.85
2749 3036 8.495949 GTCACAAATATATATCAACGGTTGGAG 58.504 37.037 19.91 0.00 0.00 3.86
2750 3037 7.170151 CGTCACAAATATATATCAACGGTTGGA 59.830 37.037 19.91 9.55 0.00 3.53
2751 3038 7.042321 ACGTCACAAATATATATCAACGGTTGG 60.042 37.037 19.91 3.36 32.30 3.77
2752 3039 7.847487 ACGTCACAAATATATATCAACGGTTG 58.153 34.615 14.62 14.62 32.30 3.77
2753 3040 9.531942 TTACGTCACAAATATATATCAACGGTT 57.468 29.630 0.00 0.00 32.30 4.44
2754 3041 9.531942 TTTACGTCACAAATATATATCAACGGT 57.468 29.630 0.00 0.00 32.30 4.83
2765 3052 9.659830 GAAGTTGAAGTTTTACGTCACAAATAT 57.340 29.630 0.00 0.00 36.39 1.28
2766 3053 8.666573 TGAAGTTGAAGTTTTACGTCACAAATA 58.333 29.630 0.00 0.00 36.39 1.40
2767 3054 7.531716 TGAAGTTGAAGTTTTACGTCACAAAT 58.468 30.769 0.00 0.00 36.39 2.32
2768 3055 6.900189 TGAAGTTGAAGTTTTACGTCACAAA 58.100 32.000 0.00 0.00 36.39 2.83
2769 3056 6.483385 TGAAGTTGAAGTTTTACGTCACAA 57.517 33.333 0.00 0.00 36.39 3.33
2770 3057 6.483385 TTGAAGTTGAAGTTTTACGTCACA 57.517 33.333 0.00 0.00 36.39 3.58
2771 3058 8.545420 TCTATTGAAGTTGAAGTTTTACGTCAC 58.455 33.333 0.00 0.00 36.39 3.67
2772 3059 8.651391 TCTATTGAAGTTGAAGTTTTACGTCA 57.349 30.769 0.00 3.88 34.91 4.35
2773 3060 9.530129 CATCTATTGAAGTTGAAGTTTTACGTC 57.470 33.333 0.00 0.00 0.00 4.34
2774 3061 9.268268 TCATCTATTGAAGTTGAAGTTTTACGT 57.732 29.630 0.00 0.00 32.20 3.57
2778 3065 8.579006 TGCATCATCTATTGAAGTTGAAGTTTT 58.421 29.630 0.00 0.00 37.45 2.43
2779 3066 8.114331 TGCATCATCTATTGAAGTTGAAGTTT 57.886 30.769 0.00 0.00 37.45 2.66
2780 3067 7.692460 TGCATCATCTATTGAAGTTGAAGTT 57.308 32.000 0.00 0.00 37.45 2.66
2781 3068 7.876936 ATGCATCATCTATTGAAGTTGAAGT 57.123 32.000 0.00 0.00 37.45 3.01
2782 3069 9.827411 CATATGCATCATCTATTGAAGTTGAAG 57.173 33.333 0.19 0.00 37.45 3.02
2783 3070 9.346005 ACATATGCATCATCTATTGAAGTTGAA 57.654 29.630 0.19 0.00 37.45 2.69
2784 3071 8.780249 CACATATGCATCATCTATTGAAGTTGA 58.220 33.333 0.19 0.00 38.03 3.18
2785 3072 8.780249 TCACATATGCATCATCTATTGAAGTTG 58.220 33.333 0.19 0.00 38.03 3.16
2786 3073 8.913487 TCACATATGCATCATCTATTGAAGTT 57.087 30.769 0.19 0.00 38.03 2.66
2787 3074 8.913487 TTCACATATGCATCATCTATTGAAGT 57.087 30.769 0.19 0.00 38.03 3.01
2788 3075 9.216117 TCTTCACATATGCATCATCTATTGAAG 57.784 33.333 0.19 12.44 38.03 3.02
2789 3076 9.734984 ATCTTCACATATGCATCATCTATTGAA 57.265 29.630 0.19 3.34 38.03 2.69
2790 3077 9.162764 CATCTTCACATATGCATCATCTATTGA 57.837 33.333 0.19 0.00 39.12 2.57
2791 3078 9.162764 TCATCTTCACATATGCATCATCTATTG 57.837 33.333 0.19 0.00 0.00 1.90
2792 3079 9.163899 GTCATCTTCACATATGCATCATCTATT 57.836 33.333 0.19 0.00 0.00 1.73
2793 3080 7.491696 CGTCATCTTCACATATGCATCATCTAT 59.508 37.037 0.19 0.00 0.00 1.98
2794 3081 6.810182 CGTCATCTTCACATATGCATCATCTA 59.190 38.462 0.19 0.00 0.00 1.98
2795 3082 5.638234 CGTCATCTTCACATATGCATCATCT 59.362 40.000 0.19 0.00 0.00 2.90
2796 3083 5.163884 CCGTCATCTTCACATATGCATCATC 60.164 44.000 0.19 0.00 0.00 2.92
2797 3084 4.694037 CCGTCATCTTCACATATGCATCAT 59.306 41.667 0.19 0.00 0.00 2.45
2798 3085 4.060205 CCGTCATCTTCACATATGCATCA 58.940 43.478 0.19 0.00 0.00 3.07
2799 3086 3.120408 GCCGTCATCTTCACATATGCATC 60.120 47.826 0.19 0.00 0.00 3.91
2800 3087 2.810274 GCCGTCATCTTCACATATGCAT 59.190 45.455 3.79 3.79 0.00 3.96
2801 3088 2.212652 GCCGTCATCTTCACATATGCA 58.787 47.619 1.58 0.00 0.00 3.96
2802 3089 1.532868 GGCCGTCATCTTCACATATGC 59.467 52.381 1.58 0.00 0.00 3.14
2803 3090 1.794701 CGGCCGTCATCTTCACATATG 59.205 52.381 19.50 0.00 0.00 1.78
2804 3091 1.873903 GCGGCCGTCATCTTCACATAT 60.874 52.381 28.70 0.00 0.00 1.78
2805 3092 0.529773 GCGGCCGTCATCTTCACATA 60.530 55.000 28.70 0.00 0.00 2.29
2806 3093 1.815421 GCGGCCGTCATCTTCACAT 60.815 57.895 28.70 0.00 0.00 3.21
2807 3094 2.434185 GCGGCCGTCATCTTCACA 60.434 61.111 28.70 0.00 0.00 3.58
2808 3095 3.554692 CGCGGCCGTCATCTTCAC 61.555 66.667 28.70 5.16 0.00 3.18
2809 3096 3.699955 CTCGCGGCCGTCATCTTCA 62.700 63.158 28.70 0.67 35.54 3.02
2810 3097 2.956964 CTCGCGGCCGTCATCTTC 60.957 66.667 28.70 6.83 35.54 2.87
2811 3098 4.514577 CCTCGCGGCCGTCATCTT 62.515 66.667 28.70 0.00 35.54 2.40
2821 3108 2.103143 CTGTACAGAGCCTCGCGG 59.897 66.667 18.45 0.00 0.00 6.46
2822 3109 2.580867 GCTGTACAGAGCCTCGCG 60.581 66.667 27.08 0.00 32.35 5.87
2831 3118 1.630244 GCTGAACAGCGGCTGTACAG 61.630 60.000 33.53 18.93 44.62 2.74
2846 3133 4.948608 TTATTTCAAATTACGCGGCTGA 57.051 36.364 12.47 2.19 0.00 4.26
2849 3136 6.142122 TGTTTTTATTTCAAATTACGCGGC 57.858 33.333 12.47 0.00 0.00 6.53
2852 3139 7.273815 TCGGGATGTTTTTATTTCAAATTACGC 59.726 33.333 0.00 0.00 0.00 4.42
2861 3148 6.090783 GTGGACTTCGGGATGTTTTTATTTC 58.909 40.000 0.00 0.00 0.00 2.17
2876 3163 9.239002 TGTAACAATTTAAAATTGTGGACTTCG 57.761 29.630 0.00 0.00 40.94 3.79
2897 3204 9.853555 TGTTGTGGATTTGATGAATTATGTAAC 57.146 29.630 0.00 0.00 0.00 2.50
2949 3256 6.884096 TTGTTTGTTGTATTGTGCAAGAAG 57.116 33.333 0.00 0.00 32.16 2.85
2979 3287 1.816224 TGGCAAAAGAACCGCCTAATC 59.184 47.619 0.00 0.00 46.39 1.75
2981 3290 1.917872 ATGGCAAAAGAACCGCCTAA 58.082 45.000 0.00 0.00 46.39 2.69
3060 3394 1.754226 AGAGGAGCGATTCAGACCTTC 59.246 52.381 0.00 0.00 0.00 3.46
3063 3397 2.682155 AAAGAGGAGCGATTCAGACC 57.318 50.000 0.00 0.00 0.00 3.85
3070 3404 4.633565 GTCAATGAGAAAAAGAGGAGCGAT 59.366 41.667 0.00 0.00 0.00 4.58
3084 3418 5.368145 GGCATACCTGTAATGTCAATGAGA 58.632 41.667 0.00 0.00 0.00 3.27
3085 3419 4.516698 GGGCATACCTGTAATGTCAATGAG 59.483 45.833 0.00 0.00 35.85 2.90
3086 3420 4.080072 TGGGCATACCTGTAATGTCAATGA 60.080 41.667 0.00 0.00 41.11 2.57
3087 3421 4.206375 TGGGCATACCTGTAATGTCAATG 58.794 43.478 0.00 0.00 41.11 2.82
3089 3423 4.080072 TCATGGGCATACCTGTAATGTCAA 60.080 41.667 0.00 0.00 41.11 3.18
3096 3431 3.586429 TGATCTCATGGGCATACCTGTA 58.414 45.455 0.00 0.00 41.11 2.74
3100 3435 5.426504 CTTCTATGATCTCATGGGCATACC 58.573 45.833 2.92 0.00 37.15 2.73
3130 3465 2.799017 TGAGCATGGACAAGATTTGCT 58.201 42.857 0.00 0.00 45.75 3.91
3131 3466 3.795623 ATGAGCATGGACAAGATTTGC 57.204 42.857 0.00 0.00 0.00 3.68
3225 3564 2.226330 TGCTATTGTGCAAGAACCGTT 58.774 42.857 0.00 0.00 40.29 4.44
3283 3622 4.108570 TGCTCAAGGGATAGGTAGGAAAA 58.891 43.478 0.00 0.00 0.00 2.29
3291 3630 3.565764 TCACATTGCTCAAGGGATAGG 57.434 47.619 0.00 0.00 0.00 2.57
3295 3634 2.108075 TCCTTTCACATTGCTCAAGGGA 59.892 45.455 7.96 0.87 35.61 4.20
3346 3686 6.273071 AGTACTTTTGTCAAGCCAATTCAAC 58.727 36.000 0.00 0.00 0.00 3.18
3396 3736 8.005976 TCATACATACAACTATGGGTACTACCA 58.994 37.037 7.57 0.00 46.24 3.25
3419 3759 3.896888 TGACCTTTGAAGCAAATGGTCAT 59.103 39.130 24.10 5.57 45.20 3.06
3480 3821 0.943673 CAATGTGCTTGACGGTCACA 59.056 50.000 10.97 6.59 43.72 3.58
3505 3847 8.611654 AATTTGGCATTCATATTTTAGGATGC 57.388 30.769 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.