Multiple sequence alignment - TraesCS1D01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G175000 chr1D 100.000 8108 0 0 1 8108 249143777 249135670 0.000000e+00 14973.0
1 TraesCS1D01G175000 chr1D 78.090 356 51 16 2453 2786 249030192 249029842 4.960000e-47 200.0
2 TraesCS1D01G175000 chr1D 85.263 95 8 4 4681 4770 28185703 28185610 8.660000e-15 93.5
3 TraesCS1D01G175000 chr1B 96.247 3091 98 14 3176 6253 329375559 329378644 0.000000e+00 5049.0
4 TraesCS1D01G175000 chr1B 91.805 1867 79 22 6252 8108 329378758 329380560 0.000000e+00 2532.0
5 TraesCS1D01G175000 chr1B 96.376 1214 42 2 1968 3181 329373859 329375070 0.000000e+00 1997.0
6 TraesCS1D01G175000 chr1B 96.532 894 18 8 680 1572 329372552 329373433 0.000000e+00 1467.0
7 TraesCS1D01G175000 chr1B 98.417 379 6 0 1555 1933 329373479 329373857 0.000000e+00 667.0
8 TraesCS1D01G175000 chr1B 78.977 352 52 15 2453 2786 329479825 329480172 3.810000e-53 220.0
9 TraesCS1D01G175000 chr1B 87.903 124 13 2 1 124 329342170 329342291 2.360000e-30 145.0
10 TraesCS1D01G175000 chr1B 96.226 53 1 1 7852 7903 334658002 334658054 1.450000e-12 86.1
11 TraesCS1D01G175000 chr1A 95.548 2808 100 15 1888 4691 298561490 298564276 0.000000e+00 4470.0
12 TraesCS1D01G175000 chr1A 95.479 2566 73 14 4717 7262 298564265 298566807 0.000000e+00 4056.0
13 TraesCS1D01G175000 chr1A 93.151 1752 92 21 160 1902 298556956 298558688 0.000000e+00 2545.0
14 TraesCS1D01G175000 chr1A 87.145 739 69 13 7385 8108 298569663 298570390 0.000000e+00 815.0
15 TraesCS1D01G175000 chr1A 77.684 354 56 13 2453 2786 298603806 298604156 2.310000e-45 195.0
16 TraesCS1D01G175000 chr1A 93.496 123 8 0 7265 7387 298567128 298567250 5.000000e-42 183.0
17 TraesCS1D01G175000 chr1A 89.209 139 14 1 1 139 298556830 298556967 1.080000e-38 172.0
18 TraesCS1D01G175000 chr1A 76.608 171 28 11 4576 4739 256959625 256959460 5.210000e-12 84.2
19 TraesCS1D01G175000 chr2B 81.728 301 37 10 4265 4556 650407019 650406728 1.360000e-57 235.0
20 TraesCS1D01G175000 chr2B 77.273 132 23 7 4610 4739 161147506 161147632 4.060000e-08 71.3
21 TraesCS1D01G175000 chr7D 84.810 158 18 2 474 626 81909369 81909213 3.920000e-33 154.0
22 TraesCS1D01G175000 chr7D 92.647 68 5 0 4680 4747 388967250 388967183 1.860000e-16 99.0
23 TraesCS1D01G175000 chr5B 82.840 169 24 2 463 626 36611904 36612072 6.560000e-31 147.0
24 TraesCS1D01G175000 chr5B 86.139 101 7 4 4680 4780 89029086 89029179 1.440000e-17 102.0
25 TraesCS1D01G175000 chr5B 94.444 54 2 1 7851 7903 470276578 470276525 1.880000e-11 82.4
26 TraesCS1D01G175000 chr5B 86.765 68 5 3 7851 7917 439261512 439261448 1.130000e-08 73.1
27 TraesCS1D01G175000 chr5B 100.000 29 0 0 7402 7430 54346668 54346640 4.000000e-03 54.7
28 TraesCS1D01G175000 chr5D 82.317 164 24 3 468 626 42067946 42067783 3.950000e-28 137.0
29 TraesCS1D01G175000 chr5D 82.500 120 21 0 507 626 533998006 533998125 1.110000e-18 106.0
30 TraesCS1D01G175000 chr5D 79.710 138 19 6 4607 4740 375409172 375409304 3.120000e-14 91.6
31 TraesCS1D01G175000 chr3B 81.132 159 25 2 463 616 227686453 227686611 1.110000e-23 122.0
32 TraesCS1D01G175000 chr3B 94.444 54 2 1 7851 7903 749311147 749311094 1.880000e-11 82.4
33 TraesCS1D01G175000 chr4D 79.641 167 25 4 465 626 112100538 112100376 2.390000e-20 111.0
34 TraesCS1D01G175000 chr7B 78.161 174 30 5 464 629 222668211 222668038 4.000000e-18 104.0
35 TraesCS1D01G175000 chr7B 95.385 65 3 0 4682 4746 455666180 455666244 4.000000e-18 104.0
36 TraesCS1D01G175000 chr7B 100.000 47 0 0 7851 7897 59339921 59339875 4.030000e-13 87.9
37 TraesCS1D01G175000 chr7B 94.444 54 2 1 7851 7903 744317800 744317747 1.880000e-11 82.4
38 TraesCS1D01G175000 chrUn 78.659 164 19 4 468 626 100764135 100764287 2.410000e-15 95.3
39 TraesCS1D01G175000 chr4A 77.381 168 30 3 465 627 465222810 465222974 8.660000e-15 93.5
40 TraesCS1D01G175000 chr4A 100.000 28 0 0 7403 7430 668935551 668935524 1.500000e-02 52.8
41 TraesCS1D01G175000 chr4B 76.744 172 26 13 4576 4739 449393420 449393585 5.210000e-12 84.2
42 TraesCS1D01G175000 chr6B 77.778 162 13 13 7851 8002 396927252 396927104 2.430000e-10 78.7
43 TraesCS1D01G175000 chr2D 86.885 61 8 0 7634 7694 81244390 81244450 1.460000e-07 69.4
44 TraesCS1D01G175000 chr6D 95.122 41 1 1 7404 7444 391693536 391693575 6.790000e-06 63.9
45 TraesCS1D01G175000 chr7A 92.683 41 3 0 4264 4304 207472478 207472438 8.790000e-05 60.2
46 TraesCS1D01G175000 chr3D 100.000 29 0 0 7402 7430 548714246 548714218 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G175000 chr1D 249135670 249143777 8107 True 14973.000000 14973 100.0000 1 8108 1 chr1D.!!$R3 8107
1 TraesCS1D01G175000 chr1B 329372552 329380560 8008 False 2342.400000 5049 95.8754 680 8108 5 chr1B.!!$F4 7428
2 TraesCS1D01G175000 chr1A 298556830 298570390 13560 False 2040.166667 4470 92.3380 1 8108 6 chr1A.!!$F2 8107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.320073 CCGAAACCACGCCTCTTGTA 60.320 55.000 0.00 0.0 0.00 2.41 F
282 283 0.527817 GACTACTCCCAATGACGGCG 60.528 60.000 4.80 4.8 0.00 6.46 F
548 554 0.883370 GAGACCACCAAACGACCACC 60.883 60.000 0.00 0.0 0.00 4.61 F
1547 1554 0.802994 TTAGCGGCCGTGTGATTACG 60.803 55.000 28.70 0.0 43.35 3.18 F
1552 1559 1.149987 GGCCGTGTGATTACGTCAAA 58.850 50.000 0.00 0.0 42.24 2.69 F
3334 6716 0.747255 ATGCGTGCTAGACTACCTGG 59.253 55.000 0.00 0.0 0.00 4.45 F
4305 7695 2.028778 GGCTGATCGCGCTCTCAT 59.971 61.111 11.66 0.0 40.44 2.90 F
5423 8827 0.482446 TGCCTTCCAAGGGAATGTGT 59.518 50.000 7.48 0.0 44.09 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1468 1.040646 TTCCAGACTCACTTGCTCGT 58.959 50.000 0.00 0.00 0.00 4.18 R
1491 1497 2.035066 AGCAAAACCAAGCAGCAACTAG 59.965 45.455 0.00 0.00 0.00 2.57 R
2029 4915 2.752903 CAGTTACCAAATTTCCCGAGGG 59.247 50.000 0.65 0.65 0.00 4.30 R
3100 5988 0.388391 ACATGCCAAATTTGACCGCG 60.388 50.000 19.86 0.00 0.00 6.46 R
3364 6746 2.034076 GCACGTTTGTAGCAAAAGACG 58.966 47.619 12.82 8.28 36.65 4.18 R
4694 8088 1.658994 TTAAAATACCCGCTGCCTCG 58.341 50.000 0.00 0.00 0.00 4.63 R
5687 9091 1.705337 CTAGCCCACGTGCAAATCGG 61.705 60.000 10.91 5.93 0.00 4.18 R
7306 11154 1.265905 CGGGTGGAAAGCACAAGTTAC 59.734 52.381 0.00 0.00 0.00 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.081142 TGAAGAAGAGTGACCTTGTGAACA 60.081 41.667 0.00 0.00 0.00 3.18
43 44 6.591935 AGAAGAGTGACCTTGTGAACATTTA 58.408 36.000 0.00 0.00 0.00 1.40
62 63 1.470051 AATTACATGCCACCCGGTTC 58.530 50.000 0.00 0.00 33.28 3.62
68 69 3.319198 GCCACCCGGTTCCAGAGA 61.319 66.667 0.00 0.00 33.28 3.10
82 83 6.352516 GGTTCCAGAGATTTGTGTCATCTAT 58.647 40.000 0.00 0.00 30.70 1.98
85 86 7.370905 TCCAGAGATTTGTGTCATCTATCAT 57.629 36.000 0.00 0.00 30.70 2.45
86 87 7.799081 TCCAGAGATTTGTGTCATCTATCATT 58.201 34.615 0.00 0.00 30.70 2.57
115 116 4.955811 TCTCACTTTGTCATGTACACCT 57.044 40.909 0.00 0.00 38.00 4.00
121 122 5.118664 CACTTTGTCATGTACACCTACGAAG 59.881 44.000 21.50 21.50 38.00 3.79
124 125 3.822167 TGTCATGTACACCTACGAAGTGA 59.178 43.478 0.00 0.00 35.00 3.41
126 127 4.155462 GTCATGTACACCTACGAAGTGAGA 59.845 45.833 0.00 0.00 45.73 3.27
127 128 4.948004 TCATGTACACCTACGAAGTGAGAT 59.052 41.667 0.00 0.00 45.73 2.75
128 129 6.037940 GTCATGTACACCTACGAAGTGAGATA 59.962 42.308 0.00 0.00 45.73 1.98
129 130 6.600427 TCATGTACACCTACGAAGTGAGATAA 59.400 38.462 0.00 0.00 45.73 1.75
130 131 6.187125 TGTACACCTACGAAGTGAGATAAC 57.813 41.667 10.37 3.11 45.73 1.89
131 132 5.706833 TGTACACCTACGAAGTGAGATAACA 59.293 40.000 10.37 4.97 45.73 2.41
132 133 5.916661 ACACCTACGAAGTGAGATAACAT 57.083 39.130 10.37 0.00 45.73 2.71
133 134 5.651530 ACACCTACGAAGTGAGATAACATG 58.348 41.667 10.37 0.00 45.73 3.21
134 135 4.504461 CACCTACGAAGTGAGATAACATGC 59.496 45.833 0.00 0.00 45.73 4.06
135 136 4.159693 ACCTACGAAGTGAGATAACATGCA 59.840 41.667 0.00 0.00 45.73 3.96
136 137 5.163405 ACCTACGAAGTGAGATAACATGCAT 60.163 40.000 0.00 0.00 45.73 3.96
137 138 5.755375 CCTACGAAGTGAGATAACATGCATT 59.245 40.000 0.00 0.00 45.73 3.56
138 139 5.725110 ACGAAGTGAGATAACATGCATTC 57.275 39.130 0.00 0.00 42.51 2.67
139 140 5.423015 ACGAAGTGAGATAACATGCATTCT 58.577 37.500 0.00 0.00 42.51 2.40
140 141 5.877012 ACGAAGTGAGATAACATGCATTCTT 59.123 36.000 0.00 0.00 42.51 2.52
141 142 6.372659 ACGAAGTGAGATAACATGCATTCTTT 59.627 34.615 0.00 0.00 42.51 2.52
142 143 7.094634 ACGAAGTGAGATAACATGCATTCTTTT 60.095 33.333 0.00 0.00 42.51 2.27
143 144 7.752239 CGAAGTGAGATAACATGCATTCTTTTT 59.248 33.333 0.00 0.00 0.00 1.94
169 170 1.532868 GCGGGTGAGATAACATGCATC 59.467 52.381 0.00 0.00 0.00 3.91
171 172 2.146342 GGGTGAGATAACATGCATCCG 58.854 52.381 0.00 0.00 0.00 4.18
179 180 0.521291 AACATGCATCCGAAACCACG 59.479 50.000 0.00 0.00 0.00 4.94
186 187 0.673644 ATCCGAAACCACGCCTCTTG 60.674 55.000 0.00 0.00 0.00 3.02
188 189 0.320073 CCGAAACCACGCCTCTTGTA 60.320 55.000 0.00 0.00 0.00 2.41
246 247 3.181516 CGTGCAATTACTGGCTTCTTCTC 60.182 47.826 0.00 0.00 0.00 2.87
275 276 1.153628 GCGCACGACTACTCCCAAT 60.154 57.895 0.30 0.00 0.00 3.16
276 277 1.421410 GCGCACGACTACTCCCAATG 61.421 60.000 0.30 0.00 0.00 2.82
280 281 0.815734 ACGACTACTCCCAATGACGG 59.184 55.000 0.00 0.00 0.00 4.79
282 283 0.527817 GACTACTCCCAATGACGGCG 60.528 60.000 4.80 4.80 0.00 6.46
291 292 1.982395 AATGACGGCGACTCCCTCA 60.982 57.895 16.62 5.89 34.98 3.86
305 306 1.615107 CCCTCAACGTCGAAGTTCGC 61.615 60.000 20.42 13.90 40.21 4.70
331 332 6.569179 TGATGACATGGCATTTGATGATAG 57.431 37.500 17.03 0.00 0.00 2.08
335 336 3.004002 ACATGGCATTTGATGATAGTGCG 59.996 43.478 0.00 0.00 36.70 5.34
357 358 2.851195 ACACATCTTCTTCCACCACAC 58.149 47.619 0.00 0.00 0.00 3.82
388 389 3.536956 TGTATCCCTTTGTCACGGATC 57.463 47.619 0.00 0.00 37.56 3.36
395 396 2.436417 CTTTGTCACGGATCATGGGTT 58.564 47.619 0.00 0.00 0.00 4.11
397 398 3.924114 TTGTCACGGATCATGGGTTAT 57.076 42.857 0.00 0.00 0.00 1.89
398 399 3.924114 TGTCACGGATCATGGGTTATT 57.076 42.857 0.00 0.00 0.00 1.40
400 401 3.054728 TGTCACGGATCATGGGTTATTGT 60.055 43.478 0.00 0.00 0.00 2.71
403 404 3.312421 CACGGATCATGGGTTATTGTGAC 59.688 47.826 0.00 0.00 0.00 3.67
421 422 2.938451 TGACTTGCACTCTGACACAAAG 59.062 45.455 0.00 0.00 0.00 2.77
423 424 2.939103 ACTTGCACTCTGACACAAAGAC 59.061 45.455 0.00 0.00 0.00 3.01
424 425 2.689553 TGCACTCTGACACAAAGACA 57.310 45.000 0.00 0.00 0.00 3.41
430 431 6.262944 TGCACTCTGACACAAAGACATTATTT 59.737 34.615 0.00 0.00 0.00 1.40
431 432 7.141363 GCACTCTGACACAAAGACATTATTTT 58.859 34.615 0.00 0.00 0.00 1.82
432 433 8.289618 GCACTCTGACACAAAGACATTATTTTA 58.710 33.333 0.00 0.00 0.00 1.52
436 437 9.739276 TCTGACACAAAGACATTATTTTATCCT 57.261 29.630 0.00 0.00 0.00 3.24
472 473 9.846248 ATCACATGTTTAGCTTTTCAAATCTAC 57.154 29.630 0.00 0.00 0.00 2.59
537 543 2.093447 ACATTGAGATTCCGAGACCACC 60.093 50.000 0.00 0.00 0.00 4.61
538 544 1.639722 TTGAGATTCCGAGACCACCA 58.360 50.000 0.00 0.00 0.00 4.17
540 546 1.974957 TGAGATTCCGAGACCACCAAA 59.025 47.619 0.00 0.00 0.00 3.28
545 551 1.666872 CCGAGACCACCAAACGACC 60.667 63.158 0.00 0.00 0.00 4.79
548 554 0.883370 GAGACCACCAAACGACCACC 60.883 60.000 0.00 0.00 0.00 4.61
575 581 3.760035 AGAACGAGCCGCCGACAT 61.760 61.111 8.04 0.00 0.00 3.06
582 588 4.221422 GCCGCCGACATGCCTCTA 62.221 66.667 0.00 0.00 0.00 2.43
585 591 1.730902 CGCCGACATGCCTCTATCG 60.731 63.158 0.00 0.00 0.00 2.92
595 601 1.602323 CCTCTATCGCCGCTCCTCT 60.602 63.158 0.00 0.00 0.00 3.69
596 602 1.578926 CTCTATCGCCGCTCCTCTG 59.421 63.158 0.00 0.00 0.00 3.35
633 639 4.807834 GATCTTGTCGATGACATCACATGT 59.192 41.667 15.58 0.00 42.40 3.21
713 719 6.922957 TGTTTTATCCACTGCATTTTCAGTTC 59.077 34.615 0.00 0.00 44.26 3.01
956 962 2.464459 GGCTCCGCTCATGGAAACG 61.464 63.158 0.00 0.00 37.64 3.60
1462 1468 4.408821 GTGAGGTGGCGGCCATCA 62.409 66.667 32.30 25.30 37.04 3.07
1491 1497 3.134127 GTCTGGAATGCCGCCCAC 61.134 66.667 0.00 0.00 36.79 4.61
1547 1554 0.802994 TTAGCGGCCGTGTGATTACG 60.803 55.000 28.70 0.00 43.35 3.18
1552 1559 1.149987 GGCCGTGTGATTACGTCAAA 58.850 50.000 0.00 0.00 42.24 2.69
1668 1739 9.331282 GAGTTAGTCCATTAGCTTATCATTTGT 57.669 33.333 0.00 0.00 0.00 2.83
1880 1952 3.367703 GGATGCAAGCTTTAACTGCACAT 60.368 43.478 12.02 0.00 38.37 3.21
1881 1953 4.142403 GGATGCAAGCTTTAACTGCACATA 60.142 41.667 12.02 0.00 38.37 2.29
2029 4915 3.780902 AGCTGTTGTTGCCTGTAAAAAC 58.219 40.909 0.00 0.00 0.00 2.43
2047 4933 3.529216 AACCCTCGGGAAATTTGGTAA 57.471 42.857 9.43 0.00 38.96 2.85
2372 5259 5.752098 GCACTTACTTTGCTGCTTTTATG 57.248 39.130 0.00 0.00 37.00 1.90
2373 5260 5.222631 GCACTTACTTTGCTGCTTTTATGT 58.777 37.500 0.00 0.00 37.00 2.29
2385 5272 5.051240 GCTGCTTTTATGTAGCATGCATTTC 60.051 40.000 21.98 7.43 46.63 2.17
2536 5423 1.280421 ACTTCCTCCAGGACATGAAGC 59.720 52.381 14.60 0.00 45.39 3.86
2711 5598 9.965824 CTTTACTCACCATTTTCACATTTACTT 57.034 29.630 0.00 0.00 0.00 2.24
2716 5603 9.097257 CTCACCATTTTCACATTTACTTTGTTT 57.903 29.630 0.00 0.00 0.00 2.83
2846 5734 7.448777 TGCACAATGGATACCTAAAACTGTTTA 59.551 33.333 6.16 0.00 0.00 2.01
2970 5858 3.756434 GGAAACATCTTTTCGGGATCACA 59.244 43.478 0.00 0.00 0.00 3.58
2986 5874 5.305644 GGGATCACAGACTATCAGGTACATT 59.694 44.000 0.00 0.00 0.00 2.71
3047 5935 3.253188 GCATGCCTCAGTTTTGTGACTTA 59.747 43.478 6.36 0.00 0.00 2.24
3334 6716 0.747255 ATGCGTGCTAGACTACCTGG 59.253 55.000 0.00 0.00 0.00 4.45
3381 6763 3.579147 TGACGTCTTTTGCTACAAACG 57.421 42.857 17.92 2.48 36.29 3.60
3468 6850 4.146443 GCAAATAGCTTTGTGTTGACGAAC 59.854 41.667 0.00 0.00 43.07 3.95
3560 6944 7.201565 CCTTTTTGCTAGTAGTTCAGAGCATAC 60.202 40.741 0.00 0.00 44.02 2.39
3568 6952 6.402222 AGTAGTTCAGAGCATACCTTTTGAG 58.598 40.000 0.00 0.00 0.00 3.02
3625 7009 5.771469 TGTATTTCTGCATGTCTTGTTTGG 58.229 37.500 0.00 0.00 0.00 3.28
3807 7194 7.822334 TGTTCTTACAGGGTATAACATTGTCAG 59.178 37.037 0.92 1.21 0.00 3.51
3810 7197 4.843728 ACAGGGTATAACATTGTCAGGTG 58.156 43.478 0.00 0.00 0.00 4.00
3903 7293 4.934075 TTTGCATTTCTCATCTCTGACG 57.066 40.909 0.00 0.00 0.00 4.35
4023 7413 6.183360 TGTCACAATTTTACTGCTTGATTGGT 60.183 34.615 0.00 0.00 33.25 3.67
4028 7418 7.439056 ACAATTTTACTGCTTGATTGGTTTCAG 59.561 33.333 0.00 0.00 33.25 3.02
4053 7443 3.119955 GCTTTTTCATCTTCACCGGTACC 60.120 47.826 6.87 0.16 0.00 3.34
4116 7506 7.198390 TCTAAGTATGTACTGTACAATTCGCC 58.802 38.462 23.03 8.66 42.76 5.54
4150 7540 2.754552 GGTATGTACTGTGTACACCCGA 59.245 50.000 22.91 3.92 0.00 5.14
4305 7695 2.028778 GGCTGATCGCGCTCTCAT 59.971 61.111 11.66 0.00 40.44 2.90
4652 8046 2.041701 GCCTATGTTGCAATGGGGAAT 58.958 47.619 0.59 0.00 0.00 3.01
4672 8066 2.159272 GACACGTTCGGCTGCTCAAC 62.159 60.000 0.00 1.97 0.00 3.18
4674 8068 2.733218 CGTTCGGCTGCTCAACGA 60.733 61.111 23.20 11.60 44.51 3.85
4694 8088 4.965858 CGAGATCCGACGGCTCGC 62.966 72.222 24.37 18.37 43.88 5.03
5077 8474 8.082242 GTGTTTCTTATTTAAACTGATGCAGGT 58.918 33.333 0.00 0.00 37.64 4.00
5098 8495 8.874816 GCAGGTTTTTAATTTGTTGTAACTTCA 58.125 29.630 0.00 0.00 0.00 3.02
5374 8773 2.706723 TGCCTTCACTACTTGGTGGTAA 59.293 45.455 0.00 0.00 37.75 2.85
5423 8827 0.482446 TGCCTTCCAAGGGAATGTGT 59.518 50.000 7.48 0.00 44.09 3.72
5461 8865 2.264005 TTGTACGAAACTGCATGGGT 57.736 45.000 0.00 0.00 0.00 4.51
5542 8946 6.519382 TCTGAATCTTTCTATGCATCGATGT 58.481 36.000 25.47 10.33 0.00 3.06
5620 9024 4.494091 ACATTCCCACAGAGGTCATTAG 57.506 45.455 0.00 0.00 34.66 1.73
5650 9054 9.066892 GGTGAATAGTATCCTTGCATTCAATAA 57.933 33.333 0.00 0.00 37.36 1.40
5687 9091 0.238553 GCAAGTTTCCTCAAGGCGAC 59.761 55.000 0.00 0.00 34.44 5.19
5705 9109 1.743623 CCGATTTGCACGTGGGCTA 60.744 57.895 18.88 0.00 34.04 3.93
5829 9233 9.803507 ATAGCTGGAGATTTTGATCATGATAAA 57.196 29.630 8.54 4.50 0.00 1.40
5932 9336 6.183360 GGTGATTCCACATTCTACGCATTTAA 60.183 38.462 0.00 0.00 44.93 1.52
5982 9386 7.716799 AATGTTAACCTGAAATAAGGCATCA 57.283 32.000 2.48 0.00 41.46 3.07
6105 9509 8.409371 GGGAATCTTCAAAATAGTCTGGATTTC 58.591 37.037 0.00 0.00 0.00 2.17
6508 10029 7.561356 CCCCCACTTATCACTTGAATAATTCTT 59.439 37.037 0.00 0.00 0.00 2.52
6681 10202 8.593945 AGATTGATTAGCTTTACCCAATTGAA 57.406 30.769 7.12 0.00 0.00 2.69
6707 10228 8.504005 ACTATCTTCAAACCTTGTTATTGTTCG 58.496 33.333 0.00 0.00 0.00 3.95
6753 10274 2.622942 ACTTGCCAACTTGGTATGTGTG 59.377 45.455 14.28 1.17 38.64 3.82
6799 10328 6.968263 TTGTTCAAAATCACCTTATGACCA 57.032 33.333 0.00 0.00 41.24 4.02
6844 10374 2.777459 TGGTAATGTGTTTTGGGGGT 57.223 45.000 0.00 0.00 0.00 4.95
7229 10759 7.780271 TGCATATACCAATAACCATGTAAACCA 59.220 33.333 0.00 0.00 0.00 3.67
7298 11146 5.392165 CGACTTGTAAGTTTCCCACAACAAA 60.392 40.000 0.00 0.00 39.88 2.83
7351 11199 7.378461 CGTTGTAATAAAAACATGCACTGAAGT 59.622 33.333 0.00 0.00 0.00 3.01
7398 13661 4.021368 TCCTAACAGTGACCACTTTCTAGC 60.021 45.833 0.00 0.00 40.20 3.42
7413 13676 1.644337 TCTAGCCAAGTACTCCCTCCA 59.356 52.381 0.00 0.00 0.00 3.86
7416 13679 0.470341 GCCAAGTACTCCCTCCATCC 59.530 60.000 0.00 0.00 0.00 3.51
7417 13680 1.972207 GCCAAGTACTCCCTCCATCCT 60.972 57.143 0.00 0.00 0.00 3.24
7425 13688 8.272173 CAAGTACTCCCTCCATCCTAAAATAAA 58.728 37.037 0.00 0.00 0.00 1.40
7436 13699 7.041167 TCCATCCTAAAATAAATGTCGCTGATG 60.041 37.037 0.00 0.00 0.00 3.07
7484 13753 3.081804 ACACTTATTTTGGAGCGGAAGG 58.918 45.455 0.00 0.00 0.00 3.46
7532 13801 4.687483 CAGCAACTTCAAGGCCTAAAATTG 59.313 41.667 5.16 11.56 0.00 2.32
7641 13910 6.756221 AGTAGACCAACTTGTATCGAAAGTT 58.244 36.000 7.71 7.71 46.25 2.66
7653 13922 1.880675 TCGAAAGTTCTCTCTGCTCGT 59.119 47.619 0.00 0.00 0.00 4.18
7956 14234 4.807304 ACAAAGTACACACAAACGAGGTAG 59.193 41.667 0.00 0.00 0.00 3.18
7996 14274 0.040958 GAGCACCAACTCAACAAGCG 60.041 55.000 0.00 0.00 36.65 4.68
8078 14356 2.283529 GCGGTGGAGGAAGTGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.135933 GTCACTCTTCTTCAACGGTGG 58.864 52.381 0.00 0.00 0.00 4.61
39 40 3.637769 ACCGGGTGGCATGTAATTAAAT 58.362 40.909 6.32 0.00 39.70 1.40
43 44 1.470051 GAACCGGGTGGCATGTAATT 58.530 50.000 6.32 0.00 39.70 1.40
62 63 8.447924 AAATGATAGATGACACAAATCTCTGG 57.552 34.615 0.00 0.00 35.92 3.86
104 105 4.329392 TCTCACTTCGTAGGTGTACATGA 58.671 43.478 0.00 0.00 36.25 3.07
105 106 4.696899 TCTCACTTCGTAGGTGTACATG 57.303 45.455 0.00 0.00 36.25 3.21
107 108 5.706833 TGTTATCTCACTTCGTAGGTGTACA 59.293 40.000 0.00 0.00 36.25 2.90
115 116 6.573434 AGAATGCATGTTATCTCACTTCGTA 58.427 36.000 0.00 0.00 0.00 3.43
144 145 3.366883 GCATGTTATCTCACCCGCAAAAA 60.367 43.478 0.00 0.00 0.00 1.94
145 146 2.163412 GCATGTTATCTCACCCGCAAAA 59.837 45.455 0.00 0.00 0.00 2.44
146 147 1.742831 GCATGTTATCTCACCCGCAAA 59.257 47.619 0.00 0.00 0.00 3.68
147 148 1.339535 TGCATGTTATCTCACCCGCAA 60.340 47.619 0.00 0.00 0.00 4.85
148 149 0.251634 TGCATGTTATCTCACCCGCA 59.748 50.000 0.00 0.00 0.00 5.69
149 150 1.532868 GATGCATGTTATCTCACCCGC 59.467 52.381 2.46 0.00 0.00 6.13
150 151 2.146342 GGATGCATGTTATCTCACCCG 58.854 52.381 2.46 0.00 0.00 5.28
151 152 2.146342 CGGATGCATGTTATCTCACCC 58.854 52.381 2.46 0.00 0.00 4.61
152 153 3.111853 TCGGATGCATGTTATCTCACC 57.888 47.619 2.46 0.00 0.00 4.02
153 154 4.260784 GGTTTCGGATGCATGTTATCTCAC 60.261 45.833 2.46 0.00 0.00 3.51
154 155 3.876914 GGTTTCGGATGCATGTTATCTCA 59.123 43.478 2.46 0.00 0.00 3.27
155 156 3.876914 TGGTTTCGGATGCATGTTATCTC 59.123 43.478 2.46 0.00 0.00 2.75
156 157 3.627577 GTGGTTTCGGATGCATGTTATCT 59.372 43.478 2.46 0.00 0.00 1.98
157 158 3.546020 CGTGGTTTCGGATGCATGTTATC 60.546 47.826 2.46 0.00 0.00 1.75
158 159 2.354510 CGTGGTTTCGGATGCATGTTAT 59.645 45.455 2.46 0.00 0.00 1.89
169 170 0.320073 TACAAGAGGCGTGGTTTCGG 60.320 55.000 0.00 0.00 0.00 4.30
171 172 2.031420 GGTTTACAAGAGGCGTGGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
179 180 1.277273 ACCTACGGGTTTACAAGAGGC 59.723 52.381 0.00 0.00 44.73 4.70
186 187 2.094545 ACGTGATCACCTACGGGTTTAC 60.095 50.000 20.03 0.00 44.73 2.01
188 189 0.971386 ACGTGATCACCTACGGGTTT 59.029 50.000 20.03 0.00 44.73 3.27
212 213 0.950555 ATTGCACGAGAGCGCTTTCA 60.951 50.000 25.56 7.97 40.47 2.69
214 215 1.128692 GTAATTGCACGAGAGCGCTTT 59.871 47.619 13.26 5.40 40.47 3.51
226 227 3.244875 TGGAGAAGAAGCCAGTAATTGCA 60.245 43.478 0.00 0.00 0.00 4.08
282 283 0.597072 ACTTCGACGTTGAGGGAGTC 59.403 55.000 18.24 0.00 0.00 3.36
291 292 1.563111 TCAAAGCGAACTTCGACGTT 58.437 45.000 15.43 7.05 43.74 3.99
305 306 5.656480 TCATCAAATGCCATGTCATCAAAG 58.344 37.500 0.00 0.00 0.00 2.77
335 336 3.251004 GTGTGGTGGAAGAAGATGTGTTC 59.749 47.826 0.00 0.00 0.00 3.18
357 358 6.376864 TGACAAAGGGATACAAACACATATGG 59.623 38.462 7.80 0.00 39.74 2.74
388 389 3.836949 GTGCAAGTCACAATAACCCATG 58.163 45.455 0.00 0.00 44.98 3.66
400 401 2.689553 TTGTGTCAGAGTGCAAGTCA 57.310 45.000 0.00 0.00 39.29 3.41
403 404 2.938451 TGTCTTTGTGTCAGAGTGCAAG 59.062 45.455 0.00 0.00 0.00 4.01
409 410 9.994432 GGATAAAATAATGTCTTTGTGTCAGAG 57.006 33.333 0.00 0.00 0.00 3.35
433 434 8.090831 GCTAAACATGTGATATGATGTCTAGGA 58.909 37.037 0.00 0.00 31.43 2.94
434 435 8.093307 AGCTAAACATGTGATATGATGTCTAGG 58.907 37.037 0.00 0.00 31.43 3.02
436 437 9.836864 AAAGCTAAACATGTGATATGATGTCTA 57.163 29.630 0.00 0.00 31.43 2.59
437 438 8.743085 AAAGCTAAACATGTGATATGATGTCT 57.257 30.769 0.00 0.00 31.43 3.41
438 439 9.443283 GAAAAGCTAAACATGTGATATGATGTC 57.557 33.333 0.00 0.00 31.43 3.06
472 473 7.894376 TTGTACTCCCGTTGAACTTTTATAG 57.106 36.000 0.00 0.00 0.00 1.31
520 526 1.639722 TTGGTGGTCTCGGAATCTCA 58.360 50.000 0.00 0.00 0.00 3.27
537 543 2.892334 CGGCAGTGGTGGTCGTTTG 61.892 63.158 0.00 0.00 0.00 2.93
538 544 2.590575 CGGCAGTGGTGGTCGTTT 60.591 61.111 0.00 0.00 0.00 3.60
545 551 3.357079 GTTCTGGCGGCAGTGGTG 61.357 66.667 34.57 13.67 0.00 4.17
548 554 3.114616 CTCGTTCTGGCGGCAGTG 61.115 66.667 34.57 25.25 0.00 3.66
568 574 2.024319 GCGATAGAGGCATGTCGGC 61.024 63.158 10.02 0.00 41.61 5.54
569 575 1.373497 GGCGATAGAGGCATGTCGG 60.373 63.158 10.02 0.00 34.75 4.79
570 576 1.730902 CGGCGATAGAGGCATGTCG 60.731 63.158 0.00 4.86 36.94 4.35
575 581 3.606662 GGAGCGGCGATAGAGGCA 61.607 66.667 12.98 0.00 38.13 4.75
578 584 1.578926 CAGAGGAGCGGCGATAGAG 59.421 63.158 12.98 0.00 39.76 2.43
579 585 2.556459 GCAGAGGAGCGGCGATAGA 61.556 63.158 12.98 0.00 39.76 1.98
580 586 2.049618 GCAGAGGAGCGGCGATAG 60.050 66.667 12.98 0.00 0.00 2.08
585 591 4.527583 CTCTGGCAGAGGAGCGGC 62.528 72.222 32.31 0.00 38.67 6.53
595 601 1.077930 GATCAAGCTGGCTCTGGCA 60.078 57.895 0.00 0.00 40.87 4.92
596 602 0.394080 AAGATCAAGCTGGCTCTGGC 60.394 55.000 0.00 0.00 37.82 4.85
680 686 6.587206 TGCAGTGGATAAAACATGATGAAA 57.413 33.333 0.00 0.00 0.00 2.69
683 689 7.546316 TGAAAATGCAGTGGATAAAACATGATG 59.454 33.333 0.00 0.00 0.00 3.07
777 783 9.899226 GCAGTTCACATACTTCTTTTTCTTATT 57.101 29.630 0.00 0.00 0.00 1.40
778 784 9.066892 TGCAGTTCACATACTTCTTTTTCTTAT 57.933 29.630 0.00 0.00 0.00 1.73
779 785 8.445275 TGCAGTTCACATACTTCTTTTTCTTA 57.555 30.769 0.00 0.00 0.00 2.10
780 786 7.333528 TGCAGTTCACATACTTCTTTTTCTT 57.666 32.000 0.00 0.00 0.00 2.52
781 787 6.942532 TGCAGTTCACATACTTCTTTTTCT 57.057 33.333 0.00 0.00 0.00 2.52
782 788 9.334693 CTTATGCAGTTCACATACTTCTTTTTC 57.665 33.333 0.00 0.00 29.89 2.29
783 789 8.299570 CCTTATGCAGTTCACATACTTCTTTTT 58.700 33.333 0.00 0.00 29.89 1.94
956 962 1.535462 GACAATATATGGTGGCGGTGC 59.465 52.381 0.00 0.00 0.00 5.01
1353 1359 3.923864 ACGGAGTTCACAGCGGCA 61.924 61.111 1.45 0.00 37.78 5.69
1462 1468 1.040646 TTCCAGACTCACTTGCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
1491 1497 2.035066 AGCAAAACCAAGCAGCAACTAG 59.965 45.455 0.00 0.00 0.00 2.57
1547 1554 8.624776 TGGAAGAAGAAGAAGAAGAAATTTGAC 58.375 33.333 0.00 0.00 0.00 3.18
1580 1650 8.135529 ACTGGACTAAAACACTTAAGAAAATGC 58.864 33.333 10.09 0.00 0.00 3.56
1668 1739 8.154203 TGTACTGACTCCATATCTGAAACAAAA 58.846 33.333 0.00 0.00 0.00 2.44
1909 4795 5.774690 ACAAAAGCAGTTCAAGGGAATATCA 59.225 36.000 0.00 0.00 35.05 2.15
1985 4871 8.698210 AGCTATAAATTGAATTGATGGCTTTGA 58.302 29.630 17.50 0.00 43.16 2.69
2000 4886 5.713025 ACAGGCAACAACAGCTATAAATTG 58.287 37.500 0.00 0.00 41.41 2.32
2004 4890 6.885952 TTTTACAGGCAACAACAGCTATAA 57.114 33.333 0.00 0.00 41.41 0.98
2029 4915 2.752903 CAGTTACCAAATTTCCCGAGGG 59.247 50.000 0.65 0.65 0.00 4.30
2047 4933 6.773976 TTCTGAACCAAAGATGTTTTCAGT 57.226 33.333 12.62 0.00 41.32 3.41
2276 5162 3.609103 AAAGAAGCAAGTGTGTTAGCG 57.391 42.857 0.00 0.00 0.00 4.26
2372 5259 3.893326 AAAAGGGGAAATGCATGCTAC 57.107 42.857 20.33 7.29 0.00 3.58
2373 5260 4.865905 TCTAAAAGGGGAAATGCATGCTA 58.134 39.130 20.33 5.73 0.00 3.49
2385 5272 9.996554 ATGTTTTCATTTTACTTCTAAAAGGGG 57.003 29.630 0.00 0.00 37.19 4.79
2435 5322 3.833650 TGTTCATCAATGGCCAGATTGTT 59.166 39.130 13.05 4.08 35.25 2.83
2536 5423 4.873746 TCAACCTCAGTACCTTTGAGAG 57.126 45.455 11.20 5.32 43.75 3.20
2591 5478 2.131776 TTGCAGCATCCACATCATCA 57.868 45.000 0.00 0.00 0.00 3.07
2711 5598 0.404040 AGGCGATGGGGAGAAAACAA 59.596 50.000 0.00 0.00 0.00 2.83
2716 5603 1.820581 CGTAAGGCGATGGGGAGAA 59.179 57.895 0.00 0.00 44.77 2.87
3047 5935 5.356470 GGCATTCTGCTTTCTTGATAAGACT 59.644 40.000 0.00 0.00 44.28 3.24
3094 5982 2.414824 GCCAAATTTGACCGCGACATTA 60.415 45.455 19.86 0.00 0.00 1.90
3100 5988 0.388391 ACATGCCAAATTTGACCGCG 60.388 50.000 19.86 0.00 0.00 6.46
3364 6746 2.034076 GCACGTTTGTAGCAAAAGACG 58.966 47.619 12.82 8.28 36.65 4.18
3381 6763 4.183101 CCATGACAAAATTATGTGGGCAC 58.817 43.478 0.00 0.00 32.57 5.01
3468 6850 4.655762 TCAGGAAATCTATGTCCTCGTG 57.344 45.455 0.00 0.00 42.61 4.35
3560 6944 7.401955 AATTAGGAATGAGAAGCTCAAAAGG 57.598 36.000 0.78 0.00 44.04 3.11
3568 6952 6.481644 CACCAGAGTAATTAGGAATGAGAAGC 59.518 42.308 0.00 0.00 0.00 3.86
3625 7009 7.307493 TCATGACAATGAACAACTACTATGC 57.693 36.000 0.00 0.00 39.92 3.14
3692 7076 4.334759 ACTTGAGCTCTAACGCGTATAGAA 59.665 41.667 14.46 4.54 34.40 2.10
3784 7168 6.442564 ACCTGACAATGTTATACCCTGTAAGA 59.557 38.462 0.00 0.00 34.07 2.10
3791 7175 4.497291 TCCACCTGACAATGTTATACCC 57.503 45.455 0.00 0.00 0.00 3.69
3807 7194 5.703310 TCCCTACTCTAAGTCTAATCCACC 58.297 45.833 0.00 0.00 0.00 4.61
3810 7197 9.457436 CTATCTTCCCTACTCTAAGTCTAATCC 57.543 40.741 0.00 0.00 0.00 3.01
4023 7413 6.042143 GGTGAAGATGAAAAAGCAACTGAAA 58.958 36.000 0.00 0.00 0.00 2.69
4028 7418 3.243401 ACCGGTGAAGATGAAAAAGCAAC 60.243 43.478 6.12 0.00 0.00 4.17
4053 7443 7.805163 TGGATATAAGTGATATTATGCCCCAG 58.195 38.462 0.00 0.00 30.34 4.45
4150 7540 6.150140 CAGAAAATTAGCAGCCTAACTCTTGT 59.850 38.462 0.00 0.00 36.43 3.16
4305 7695 4.697756 CAAAGGAGGCGGCGGACA 62.698 66.667 9.78 0.00 0.00 4.02
4570 7964 4.023707 CAGAAACCTTGCAACAGAGGTAAG 60.024 45.833 8.23 0.00 45.32 2.34
4636 8030 2.234414 GTGTCATTCCCCATTGCAACAT 59.766 45.455 0.00 0.00 0.00 2.71
4652 8046 2.355837 GAGCAGCCGAACGTGTCA 60.356 61.111 0.00 0.00 0.00 3.58
4672 8066 2.352457 CCGTCGGATCTCGCTTCG 60.352 66.667 4.91 1.70 39.05 3.79
4674 8068 3.127352 GAGCCGTCGGATCTCGCTT 62.127 63.158 22.03 0.00 34.95 4.68
4694 8088 1.658994 TTAAAATACCCGCTGCCTCG 58.341 50.000 0.00 0.00 0.00 4.63
4700 8094 5.494632 CGGATCTTTTTAAAATACCCGCT 57.505 39.130 14.25 0.00 0.00 5.52
4703 8097 4.498513 CCGGCGGATCTTTTTAAAATACCC 60.499 45.833 24.41 1.08 0.00 3.69
4707 8101 2.159156 GGCCGGCGGATCTTTTTAAAAT 60.159 45.455 33.44 0.00 0.00 1.82
4847 8243 7.832503 AATGTTTTCTTGAACCAACTTCTTG 57.167 32.000 0.00 0.00 0.00 3.02
5542 8946 7.500892 TCAAGGCAAAGAAGTGTTTATGTTCTA 59.499 33.333 0.00 0.00 30.22 2.10
5650 9054 5.368989 ACTTGCTTAGAACTGTTAGCAACT 58.631 37.500 19.77 11.71 45.63 3.16
5687 9091 1.705337 CTAGCCCACGTGCAAATCGG 61.705 60.000 10.91 5.93 0.00 4.18
5982 9386 6.611642 TCATTTCATAGGCCTACAGAACTAGT 59.388 38.462 22.66 10.97 0.00 2.57
6075 9479 5.067023 CAGACTATTTTGAAGATTCCCAGCC 59.933 44.000 0.00 0.00 0.00 4.85
6105 9509 7.258022 TCAATGGATTAATTATGTCCACACG 57.742 36.000 17.61 11.42 44.21 4.49
6265 9785 9.275572 TCTCCTAATTACTTACCAGTTACCATT 57.724 33.333 0.00 0.00 34.06 3.16
6301 9821 4.523083 TCTTAACAACAGCTCAACACCTT 58.477 39.130 0.00 0.00 0.00 3.50
6681 10202 8.504005 CGAACAATAACAAGGTTTGAAGATAGT 58.496 33.333 0.00 0.00 0.00 2.12
6753 10274 4.425520 TCAAAACCATGAACCGTTTGAAC 58.574 39.130 0.00 0.00 32.65 3.18
7198 10728 8.988546 ACATGGTTATTGGTATATGCAGTTTA 57.011 30.769 0.00 0.00 0.00 2.01
7249 10779 9.719279 CGTTACAATTGTTCTTTGGTTTAGTTA 57.281 29.630 17.78 0.00 0.00 2.24
7250 10780 8.460428 TCGTTACAATTGTTCTTTGGTTTAGTT 58.540 29.630 17.78 0.00 0.00 2.24
7251 10781 7.911727 GTCGTTACAATTGTTCTTTGGTTTAGT 59.088 33.333 17.78 0.00 0.00 2.24
7252 10782 8.126700 AGTCGTTACAATTGTTCTTTGGTTTAG 58.873 33.333 17.78 0.00 0.00 1.85
7253 10783 7.987649 AGTCGTTACAATTGTTCTTTGGTTTA 58.012 30.769 17.78 0.00 0.00 2.01
7298 11146 5.301551 TGGAAAGCACAAGTTACAACATGAT 59.698 36.000 0.00 0.00 32.39 2.45
7306 11154 1.265905 CGGGTGGAAAGCACAAGTTAC 59.734 52.381 0.00 0.00 0.00 2.50
7351 11199 3.526899 TCTCATAGTTGTCCCCCTTTCA 58.473 45.455 0.00 0.00 0.00 2.69
7398 13661 2.182516 AGGATGGAGGGAGTACTTGG 57.817 55.000 0.00 0.00 0.00 3.61
7413 13676 7.807977 ACATCAGCGACATTTATTTTAGGAT 57.192 32.000 0.00 0.00 0.00 3.24
7417 13680 9.589111 TGTACTACATCAGCGACATTTATTTTA 57.411 29.630 0.00 0.00 0.00 1.52
7425 13688 5.073311 ACTTTGTACTACATCAGCGACAT 57.927 39.130 0.00 0.00 0.00 3.06
7436 13699 6.531439 CCGATTTAGCACAACTTTGTACTAC 58.469 40.000 2.13 0.00 36.91 2.73
7484 13753 6.592870 AGGGCATTAAGTTGTATTCTACTCC 58.407 40.000 0.00 0.00 0.00 3.85
7956 14234 0.031178 CAGCAGAACCCTTTGTGTGC 59.969 55.000 0.00 0.00 37.79 4.57
7996 14274 5.760743 TGTGCCCCTTTTGTTTTTATTTAGC 59.239 36.000 0.00 0.00 0.00 3.09
8025 14303 2.849294 ACCTTCTTGCTCCTCTTCAC 57.151 50.000 0.00 0.00 0.00 3.18
8064 14342 2.283529 GGCGTCTCCACTTCCTCCA 61.284 63.158 0.00 0.00 34.01 3.86
8078 14356 1.446907 CTTTGCTCTCTGATTGGCGT 58.553 50.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.