Multiple sequence alignment - TraesCS1D01G174100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G174100 chr1D 100.000 2678 0 0 1 2678 247837944 247840621 0.000000e+00 4946
1 TraesCS1D01G174100 chr1D 88.934 488 51 3 2180 2666 266233180 266233665 1.370000e-167 599
2 TraesCS1D01G174100 chr1D 96.802 344 8 3 1 342 206085811 206085469 2.990000e-159 571
3 TraesCS1D01G174100 chr1D 88.966 145 9 4 368 506 330678897 330678754 3.540000e-39 172
4 TraesCS1D01G174100 chr1A 91.300 2184 102 21 532 2678 299426439 299424307 0.000000e+00 2900
5 TraesCS1D01G174100 chr1A 96.243 346 11 2 1 344 98494902 98495247 1.390000e-157 566
6 TraesCS1D01G174100 chr1A 77.266 651 128 12 1033 1667 298646751 298646105 5.450000e-97 364
7 TraesCS1D01G174100 chr1A 85.498 331 46 2 1338 1667 298636165 298635836 7.100000e-91 344
8 TraesCS1D01G174100 chr1B 94.593 1461 50 6 526 1959 329961411 329959953 0.000000e+00 2233
9 TraesCS1D01G174100 chr1B 94.235 503 24 5 1970 2472 329959975 329959478 0.000000e+00 763
10 TraesCS1D01G174100 chr1B 96.232 345 10 3 1 343 629847614 629847957 1.800000e-156 562
11 TraesCS1D01G174100 chr6A 87.548 779 68 17 910 1679 48193995 48193237 0.000000e+00 874
12 TraesCS1D01G174100 chr6D 90.405 667 56 6 1018 1679 36629124 36628461 0.000000e+00 870
13 TraesCS1D01G174100 chr6D 90.180 499 47 2 2180 2678 326767344 326767840 0.000000e+00 649
14 TraesCS1D01G174100 chr6D 89.400 500 51 2 2180 2678 136122546 136122048 1.750000e-176 628
15 TraesCS1D01G174100 chr6D 88.966 145 10 3 368 506 209757410 209757266 9.850000e-40 174
16 TraesCS1D01G174100 chr6D 88.276 145 11 3 368 506 209777410 209777266 4.590000e-38 169
17 TraesCS1D01G174100 chr6B 89.955 667 59 6 1018 1679 84927787 84927124 0.000000e+00 854
18 TraesCS1D01G174100 chr5A 90.144 487 43 3 2180 2666 70588895 70588414 1.750000e-176 628
19 TraesCS1D01G174100 chr5A 95.942 345 13 1 1 344 547116220 547116564 2.330000e-155 558
20 TraesCS1D01G174100 chr5A 83.773 493 64 8 2186 2678 38192850 38193326 1.130000e-123 453
21 TraesCS1D01G174100 chrUn 88.889 495 54 1 2180 2673 77426388 77425894 2.280000e-170 608
22 TraesCS1D01G174100 chr4B 88.066 486 55 3 2180 2664 548175333 548175816 8.320000e-160 573
23 TraesCS1D01G174100 chr2B 96.802 344 9 2 1 343 10075673 10076015 8.320000e-160 573
24 TraesCS1D01G174100 chr2B 87.575 499 57 4 2180 2678 553832052 553831559 8.320000e-160 573
25 TraesCS1D01G174100 chr2B 90.244 164 16 0 343 506 139650148 139649985 5.810000e-52 215
26 TraesCS1D01G174100 chr5D 95.989 349 11 3 1 348 424878519 424878173 5.000000e-157 564
27 TraesCS1D01G174100 chr5D 91.270 126 8 2 405 527 373934508 373934633 4.590000e-38 169
28 TraesCS1D01G174100 chr5D 87.586 145 12 3 368 506 61185582 61185726 2.130000e-36 163
29 TraesCS1D01G174100 chr7B 95.918 343 12 2 1 342 1429609 1429950 3.010000e-154 555
30 TraesCS1D01G174100 chr7B 78.422 621 108 18 1064 1665 75790773 75791386 5.410000e-102 381
31 TraesCS1D01G174100 chr3D 95.930 344 11 2 1 343 288314815 288314474 3.010000e-154 555
32 TraesCS1D01G174100 chr3D 88.276 145 11 3 368 506 155204392 155204536 4.590000e-38 169
33 TraesCS1D01G174100 chr2D 95.362 345 14 2 1 344 330211603 330211946 5.040000e-152 547
34 TraesCS1D01G174100 chr2D 89.655 145 9 3 368 506 378292938 378293082 2.120000e-41 180
35 TraesCS1D01G174100 chr7A 78.614 664 113 23 1023 1667 120793508 120794161 1.920000e-111 412
36 TraesCS1D01G174100 chr7D 91.339 127 8 1 404 527 465264903 465264777 1.270000e-38 171
37 TraesCS1D01G174100 chr7D 100.000 65 0 0 343 407 550600569 550600633 1.300000e-23 121
38 TraesCS1D01G174100 chr4A 95.775 71 3 0 343 413 144359637 144359567 6.060000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G174100 chr1D 247837944 247840621 2677 False 4946 4946 100.000 1 2678 1 chr1D.!!$F1 2677
1 TraesCS1D01G174100 chr1A 299424307 299426439 2132 True 2900 2900 91.300 532 2678 1 chr1A.!!$R3 2146
2 TraesCS1D01G174100 chr1A 298646105 298646751 646 True 364 364 77.266 1033 1667 1 chr1A.!!$R2 634
3 TraesCS1D01G174100 chr1B 329959478 329961411 1933 True 1498 2233 94.414 526 2472 2 chr1B.!!$R1 1946
4 TraesCS1D01G174100 chr6A 48193237 48193995 758 True 874 874 87.548 910 1679 1 chr6A.!!$R1 769
5 TraesCS1D01G174100 chr6D 36628461 36629124 663 True 870 870 90.405 1018 1679 1 chr6D.!!$R1 661
6 TraesCS1D01G174100 chr6B 84927124 84927787 663 True 854 854 89.955 1018 1679 1 chr6B.!!$R1 661
7 TraesCS1D01G174100 chr7B 75790773 75791386 613 False 381 381 78.422 1064 1665 1 chr7B.!!$F2 601
8 TraesCS1D01G174100 chr7A 120793508 120794161 653 False 412 412 78.614 1023 1667 1 chr7A.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.036306 CAGGTGGCTACGGAGGTTTT 59.964 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2075 0.034186 TCCACCCATCCAAGCATGTC 60.034 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.418675 CACTCGCTTCGTATGTGGT 57.581 52.632 0.00 0.00 0.00 4.16
19 20 1.269166 CACTCGCTTCGTATGTGGTC 58.731 55.000 0.00 0.00 0.00 4.02
20 21 1.135373 CACTCGCTTCGTATGTGGTCT 60.135 52.381 0.00 0.00 0.00 3.85
21 22 2.096980 CACTCGCTTCGTATGTGGTCTA 59.903 50.000 0.00 0.00 0.00 2.59
22 23 2.950309 ACTCGCTTCGTATGTGGTCTAT 59.050 45.455 0.00 0.00 0.00 1.98
23 24 3.243101 ACTCGCTTCGTATGTGGTCTATG 60.243 47.826 0.00 0.00 0.00 2.23
24 25 1.787155 CGCTTCGTATGTGGTCTATGC 59.213 52.381 0.00 0.00 0.00 3.14
25 26 2.543861 CGCTTCGTATGTGGTCTATGCT 60.544 50.000 0.00 0.00 0.00 3.79
26 27 3.304458 CGCTTCGTATGTGGTCTATGCTA 60.304 47.826 0.00 0.00 0.00 3.49
27 28 3.982058 GCTTCGTATGTGGTCTATGCTAC 59.018 47.826 0.00 0.00 0.00 3.58
28 29 4.499188 GCTTCGTATGTGGTCTATGCTACA 60.499 45.833 0.00 0.00 34.47 2.74
29 30 5.585820 TTCGTATGTGGTCTATGCTACAA 57.414 39.130 0.00 0.00 33.70 2.41
30 31 4.928601 TCGTATGTGGTCTATGCTACAAC 58.071 43.478 0.00 0.00 33.70 3.32
31 32 3.729217 CGTATGTGGTCTATGCTACAACG 59.271 47.826 0.00 0.00 33.70 4.10
32 33 4.496840 CGTATGTGGTCTATGCTACAACGA 60.497 45.833 0.00 0.00 36.99 3.85
33 34 3.503827 TGTGGTCTATGCTACAACGAG 57.496 47.619 0.00 0.00 0.00 4.18
34 35 2.194271 GTGGTCTATGCTACAACGAGC 58.806 52.381 0.00 0.00 43.16 5.03
41 42 3.037485 GCTACAACGAGCAGAGGTC 57.963 57.895 0.00 0.00 42.36 3.85
42 43 0.528470 GCTACAACGAGCAGAGGTCT 59.472 55.000 0.00 0.00 42.36 3.85
43 44 1.743958 GCTACAACGAGCAGAGGTCTA 59.256 52.381 0.00 0.00 42.36 2.59
44 45 2.163815 GCTACAACGAGCAGAGGTCTAA 59.836 50.000 0.00 0.00 42.36 2.10
45 46 2.726832 ACAACGAGCAGAGGTCTAAC 57.273 50.000 0.00 0.00 0.00 2.34
46 47 1.272769 ACAACGAGCAGAGGTCTAACC 59.727 52.381 0.00 0.00 38.99 2.85
47 48 0.526662 AACGAGCAGAGGTCTAACCG 59.473 55.000 0.00 0.00 44.90 4.44
48 49 1.226717 CGAGCAGAGGTCTAACCGC 60.227 63.158 0.00 0.00 44.90 5.68
54 55 1.629043 AGAGGTCTAACCGCTGTTCA 58.371 50.000 1.32 0.00 46.88 3.18
55 56 1.968493 AGAGGTCTAACCGCTGTTCAA 59.032 47.619 1.32 0.00 46.88 2.69
56 57 2.028930 AGAGGTCTAACCGCTGTTCAAG 60.029 50.000 1.32 0.00 46.88 3.02
57 58 1.002087 AGGTCTAACCGCTGTTCAAGG 59.998 52.381 0.00 0.00 44.90 3.61
58 59 0.796927 GTCTAACCGCTGTTCAAGGC 59.203 55.000 0.00 0.00 35.87 4.35
63 64 2.972505 CGCTGTTCAAGGCGGTGT 60.973 61.111 0.00 0.00 46.42 4.16
64 65 2.639286 GCTGTTCAAGGCGGTGTG 59.361 61.111 0.00 0.00 0.00 3.82
65 66 2.186826 GCTGTTCAAGGCGGTGTGT 61.187 57.895 0.00 0.00 0.00 3.72
66 67 0.882927 GCTGTTCAAGGCGGTGTGTA 60.883 55.000 0.00 0.00 0.00 2.90
67 68 0.865769 CTGTTCAAGGCGGTGTGTAC 59.134 55.000 0.00 0.00 0.00 2.90
68 69 0.876777 TGTTCAAGGCGGTGTGTACG 60.877 55.000 0.00 0.00 0.00 3.67
75 76 3.408020 CGGTGTGTACGCGGTTGG 61.408 66.667 12.47 0.00 0.00 3.77
76 77 2.029369 GGTGTGTACGCGGTTGGA 59.971 61.111 12.47 0.00 0.00 3.53
77 78 2.025418 GGTGTGTACGCGGTTGGAG 61.025 63.158 12.47 0.00 0.00 3.86
78 79 2.356553 TGTGTACGCGGTTGGAGC 60.357 61.111 12.47 0.00 0.00 4.70
79 80 2.356553 GTGTACGCGGTTGGAGCA 60.357 61.111 12.47 0.00 34.19 4.26
80 81 2.048597 TGTACGCGGTTGGAGCAG 60.049 61.111 12.47 0.00 34.19 4.24
81 82 2.813908 GTACGCGGTTGGAGCAGG 60.814 66.667 12.47 0.00 34.19 4.85
82 83 3.307906 TACGCGGTTGGAGCAGGT 61.308 61.111 12.47 0.00 34.19 4.00
83 84 3.583276 TACGCGGTTGGAGCAGGTG 62.583 63.158 12.47 0.00 34.19 4.00
94 95 3.391382 GCAGGTGGCTACGGAGGT 61.391 66.667 0.00 0.00 40.25 3.85
95 96 2.955881 GCAGGTGGCTACGGAGGTT 61.956 63.158 0.00 0.00 40.25 3.50
96 97 1.677552 CAGGTGGCTACGGAGGTTT 59.322 57.895 0.00 0.00 0.00 3.27
97 98 0.036306 CAGGTGGCTACGGAGGTTTT 59.964 55.000 0.00 0.00 0.00 2.43
98 99 0.769247 AGGTGGCTACGGAGGTTTTT 59.231 50.000 0.00 0.00 0.00 1.94
99 100 1.980036 AGGTGGCTACGGAGGTTTTTA 59.020 47.619 0.00 0.00 0.00 1.52
100 101 2.079158 GGTGGCTACGGAGGTTTTTAC 58.921 52.381 0.00 0.00 0.00 2.01
101 102 2.079158 GTGGCTACGGAGGTTTTTACC 58.921 52.381 0.00 0.00 0.00 2.85
102 103 1.003464 TGGCTACGGAGGTTTTTACCC 59.997 52.381 0.00 0.00 0.00 3.69
103 104 1.003464 GGCTACGGAGGTTTTTACCCA 59.997 52.381 0.00 0.00 0.00 4.51
104 105 2.552809 GGCTACGGAGGTTTTTACCCAA 60.553 50.000 0.00 0.00 0.00 4.12
105 106 2.485426 GCTACGGAGGTTTTTACCCAAC 59.515 50.000 0.00 0.00 0.00 3.77
106 107 2.732844 ACGGAGGTTTTTACCCAACA 57.267 45.000 0.00 0.00 0.00 3.33
107 108 3.232720 ACGGAGGTTTTTACCCAACAT 57.767 42.857 0.00 0.00 0.00 2.71
108 109 2.888414 ACGGAGGTTTTTACCCAACATG 59.112 45.455 0.00 0.00 0.00 3.21
109 110 2.230266 CGGAGGTTTTTACCCAACATGG 59.770 50.000 0.00 0.00 37.25 3.66
118 119 4.438255 CCAACATGGGTGGCATCA 57.562 55.556 0.00 0.00 32.67 3.07
119 120 2.904835 CCAACATGGGTGGCATCAT 58.095 52.632 0.00 0.00 32.67 2.45
120 121 2.070305 CCAACATGGGTGGCATCATA 57.930 50.000 0.00 0.00 32.67 2.15
121 122 2.386779 CCAACATGGGTGGCATCATAA 58.613 47.619 0.00 0.00 32.67 1.90
122 123 2.101249 CCAACATGGGTGGCATCATAAC 59.899 50.000 0.00 0.00 32.67 1.89
123 124 2.071778 ACATGGGTGGCATCATAACC 57.928 50.000 0.00 0.00 0.00 2.85
124 125 1.570501 ACATGGGTGGCATCATAACCT 59.429 47.619 0.00 0.00 34.24 3.50
125 126 2.233271 CATGGGTGGCATCATAACCTC 58.767 52.381 0.00 0.00 34.24 3.85
126 127 0.550914 TGGGTGGCATCATAACCTCC 59.449 55.000 0.00 0.00 38.61 4.30
127 128 0.535102 GGGTGGCATCATAACCTCCG 60.535 60.000 0.00 0.00 39.94 4.63
128 129 0.468226 GGTGGCATCATAACCTCCGA 59.532 55.000 0.00 0.00 30.45 4.55
129 130 1.072331 GGTGGCATCATAACCTCCGAT 59.928 52.381 0.00 0.00 30.45 4.18
130 131 2.417719 GTGGCATCATAACCTCCGATC 58.582 52.381 0.00 0.00 0.00 3.69
131 132 1.000843 TGGCATCATAACCTCCGATCG 59.999 52.381 8.51 8.51 0.00 3.69
132 133 1.673033 GGCATCATAACCTCCGATCGG 60.673 57.143 28.62 28.62 0.00 4.18
133 134 1.000955 GCATCATAACCTCCGATCGGT 59.999 52.381 32.15 16.68 35.97 4.69
134 135 2.927014 GCATCATAACCTCCGATCGGTC 60.927 54.545 32.15 5.92 32.46 4.79
135 136 1.325355 TCATAACCTCCGATCGGTCC 58.675 55.000 32.15 0.00 32.46 4.46
136 137 1.037493 CATAACCTCCGATCGGTCCA 58.963 55.000 32.15 13.84 32.46 4.02
137 138 1.618837 CATAACCTCCGATCGGTCCAT 59.381 52.381 32.15 19.46 32.46 3.41
138 139 1.325355 TAACCTCCGATCGGTCCATC 58.675 55.000 32.15 0.00 32.46 3.51
139 140 0.397254 AACCTCCGATCGGTCCATCT 60.397 55.000 32.15 11.59 32.46 2.90
140 141 0.824182 ACCTCCGATCGGTCCATCTC 60.824 60.000 32.15 0.00 36.47 2.75
141 142 0.823769 CCTCCGATCGGTCCATCTCA 60.824 60.000 32.15 10.78 36.47 3.27
142 143 0.312416 CTCCGATCGGTCCATCTCAC 59.688 60.000 32.15 0.00 36.47 3.51
143 144 1.107538 TCCGATCGGTCCATCTCACC 61.108 60.000 32.15 0.00 36.47 4.02
144 145 1.109920 CCGATCGGTCCATCTCACCT 61.110 60.000 26.35 0.00 0.00 4.00
145 146 0.747255 CGATCGGTCCATCTCACCTT 59.253 55.000 7.38 0.00 0.00 3.50
146 147 1.137086 CGATCGGTCCATCTCACCTTT 59.863 52.381 7.38 0.00 0.00 3.11
147 148 2.799917 CGATCGGTCCATCTCACCTTTC 60.800 54.545 7.38 0.00 0.00 2.62
148 149 0.530744 TCGGTCCATCTCACCTTTCG 59.469 55.000 0.00 0.00 0.00 3.46
149 150 0.530744 CGGTCCATCTCACCTTTCGA 59.469 55.000 0.00 0.00 0.00 3.71
150 151 1.736032 CGGTCCATCTCACCTTTCGAC 60.736 57.143 0.00 0.00 0.00 4.20
151 152 1.275291 GGTCCATCTCACCTTTCGACA 59.725 52.381 0.00 0.00 0.00 4.35
152 153 2.093447 GGTCCATCTCACCTTTCGACAT 60.093 50.000 0.00 0.00 0.00 3.06
153 154 3.132289 GGTCCATCTCACCTTTCGACATA 59.868 47.826 0.00 0.00 0.00 2.29
154 155 4.363999 GTCCATCTCACCTTTCGACATAG 58.636 47.826 0.00 0.00 0.00 2.23
155 156 3.384789 TCCATCTCACCTTTCGACATAGG 59.615 47.826 6.00 6.00 37.56 2.57
156 157 2.961526 TCTCACCTTTCGACATAGGC 57.038 50.000 7.21 0.00 34.79 3.93
157 158 2.176045 TCTCACCTTTCGACATAGGCA 58.824 47.619 7.21 0.00 34.79 4.75
158 159 2.094182 TCTCACCTTTCGACATAGGCAC 60.094 50.000 7.21 0.00 34.79 5.01
159 160 1.621317 TCACCTTTCGACATAGGCACA 59.379 47.619 7.21 0.00 34.79 4.57
160 161 2.002586 CACCTTTCGACATAGGCACAG 58.997 52.381 7.21 0.00 34.79 3.66
161 162 1.623811 ACCTTTCGACATAGGCACAGT 59.376 47.619 7.21 0.00 34.79 3.55
162 163 2.002586 CCTTTCGACATAGGCACAGTG 58.997 52.381 0.00 0.00 0.00 3.66
163 164 2.612972 CCTTTCGACATAGGCACAGTGT 60.613 50.000 1.61 0.00 0.00 3.55
164 165 2.363788 TTCGACATAGGCACAGTGTC 57.636 50.000 0.00 0.00 40.11 3.67
166 167 3.050703 GACATAGGCACAGTGTCGG 57.949 57.895 1.61 0.00 35.86 4.79
167 168 0.246635 GACATAGGCACAGTGTCGGT 59.753 55.000 1.61 1.01 35.86 4.69
168 169 0.246635 ACATAGGCACAGTGTCGGTC 59.753 55.000 1.61 0.00 0.00 4.79
169 170 0.532573 CATAGGCACAGTGTCGGTCT 59.467 55.000 1.61 0.00 0.00 3.85
170 171 1.749063 CATAGGCACAGTGTCGGTCTA 59.251 52.381 1.61 0.00 0.00 2.59
171 172 2.139323 TAGGCACAGTGTCGGTCTAT 57.861 50.000 1.61 0.00 0.00 1.98
172 173 2.139323 AGGCACAGTGTCGGTCTATA 57.861 50.000 1.61 0.00 0.00 1.31
173 174 2.025155 AGGCACAGTGTCGGTCTATAG 58.975 52.381 1.61 0.00 0.00 1.31
174 175 1.067212 GGCACAGTGTCGGTCTATAGG 59.933 57.143 1.61 0.00 0.00 2.57
175 176 2.022195 GCACAGTGTCGGTCTATAGGA 58.978 52.381 1.61 0.00 0.00 2.94
176 177 2.223525 GCACAGTGTCGGTCTATAGGAC 60.224 54.545 1.61 0.46 43.79 3.85
177 178 3.280295 CACAGTGTCGGTCTATAGGACT 58.720 50.000 0.00 0.00 43.97 3.85
178 179 3.312973 CACAGTGTCGGTCTATAGGACTC 59.687 52.174 0.00 1.36 43.97 3.36
179 180 3.200385 ACAGTGTCGGTCTATAGGACTCT 59.800 47.826 0.00 3.56 43.97 3.24
180 181 4.408270 ACAGTGTCGGTCTATAGGACTCTA 59.592 45.833 10.12 0.00 43.97 2.43
181 182 4.751098 CAGTGTCGGTCTATAGGACTCTAC 59.249 50.000 10.12 2.22 43.97 2.59
182 183 4.655186 AGTGTCGGTCTATAGGACTCTACT 59.345 45.833 0.00 0.00 43.97 2.57
183 184 5.837979 AGTGTCGGTCTATAGGACTCTACTA 59.162 44.000 0.00 0.00 43.97 1.82
184 185 6.497954 AGTGTCGGTCTATAGGACTCTACTAT 59.502 42.308 0.00 0.00 43.97 2.12
185 186 7.016465 AGTGTCGGTCTATAGGACTCTACTATT 59.984 40.741 0.00 0.00 43.97 1.73
186 187 7.118101 GTGTCGGTCTATAGGACTCTACTATTG 59.882 44.444 0.00 0.00 43.97 1.90
187 188 6.092533 GTCGGTCTATAGGACTCTACTATTGC 59.907 46.154 0.00 0.00 43.97 3.56
188 189 5.354792 CGGTCTATAGGACTCTACTATTGCC 59.645 48.000 0.00 0.00 43.97 4.52
189 190 5.354792 GGTCTATAGGACTCTACTATTGCCG 59.645 48.000 0.00 0.00 43.97 5.69
190 191 6.171921 GTCTATAGGACTCTACTATTGCCGA 58.828 44.000 0.00 0.00 41.46 5.54
191 192 6.824704 GTCTATAGGACTCTACTATTGCCGAT 59.175 42.308 0.00 0.00 41.46 4.18
192 193 7.337436 GTCTATAGGACTCTACTATTGCCGATT 59.663 40.741 0.00 0.00 41.46 3.34
193 194 6.919775 ATAGGACTCTACTATTGCCGATTT 57.080 37.500 0.00 0.00 0.00 2.17
194 195 4.950050 AGGACTCTACTATTGCCGATTTG 58.050 43.478 0.00 0.00 0.00 2.32
195 196 4.406003 AGGACTCTACTATTGCCGATTTGT 59.594 41.667 0.00 0.00 0.00 2.83
196 197 4.745620 GGACTCTACTATTGCCGATTTGTC 59.254 45.833 0.00 0.00 0.00 3.18
197 198 4.360563 ACTCTACTATTGCCGATTTGTCG 58.639 43.478 0.00 0.00 0.00 4.35
210 211 5.942325 CGATTTGTCGGTTTTTGTTTTCT 57.058 34.783 0.00 0.00 0.00 2.52
211 212 6.325849 CGATTTGTCGGTTTTTGTTTTCTT 57.674 33.333 0.00 0.00 0.00 2.52
212 213 6.399626 CGATTTGTCGGTTTTTGTTTTCTTC 58.600 36.000 0.00 0.00 0.00 2.87
213 214 6.252655 CGATTTGTCGGTTTTTGTTTTCTTCT 59.747 34.615 0.00 0.00 0.00 2.85
214 215 6.698359 TTTGTCGGTTTTTGTTTTCTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
215 216 4.739195 TGTCGGTTTTTGTTTTCTTCTGG 58.261 39.130 0.00 0.00 0.00 3.86
216 217 4.218852 TGTCGGTTTTTGTTTTCTTCTGGT 59.781 37.500 0.00 0.00 0.00 4.00
217 218 5.165676 GTCGGTTTTTGTTTTCTTCTGGTT 58.834 37.500 0.00 0.00 0.00 3.67
218 219 5.061684 GTCGGTTTTTGTTTTCTTCTGGTTG 59.938 40.000 0.00 0.00 0.00 3.77
219 220 4.926832 CGGTTTTTGTTTTCTTCTGGTTGT 59.073 37.500 0.00 0.00 0.00 3.32
220 221 5.061684 CGGTTTTTGTTTTCTTCTGGTTGTC 59.938 40.000 0.00 0.00 0.00 3.18
221 222 5.929415 GGTTTTTGTTTTCTTCTGGTTGTCA 59.071 36.000 0.00 0.00 0.00 3.58
222 223 6.090763 GGTTTTTGTTTTCTTCTGGTTGTCAG 59.909 38.462 0.00 0.00 44.68 3.51
231 232 3.644966 TCTGGTTGTCAGACTTTTGGT 57.355 42.857 1.31 0.00 46.71 3.67
232 233 3.278574 TCTGGTTGTCAGACTTTTGGTG 58.721 45.455 1.31 0.00 46.71 4.17
233 234 3.016736 CTGGTTGTCAGACTTTTGGTGT 58.983 45.455 1.31 0.00 46.18 4.16
234 235 3.426615 TGGTTGTCAGACTTTTGGTGTT 58.573 40.909 1.31 0.00 0.00 3.32
235 236 3.442273 TGGTTGTCAGACTTTTGGTGTTC 59.558 43.478 1.31 0.00 0.00 3.18
236 237 3.486875 GGTTGTCAGACTTTTGGTGTTCG 60.487 47.826 1.31 0.00 0.00 3.95
237 238 2.285083 TGTCAGACTTTTGGTGTTCGG 58.715 47.619 1.31 0.00 0.00 4.30
238 239 1.002792 GTCAGACTTTTGGTGTTCGGC 60.003 52.381 0.00 0.00 0.00 5.54
239 240 1.134220 TCAGACTTTTGGTGTTCGGCT 60.134 47.619 0.00 0.00 0.00 5.52
240 241 1.002468 CAGACTTTTGGTGTTCGGCTG 60.002 52.381 0.00 0.00 0.00 4.85
241 242 1.021968 GACTTTTGGTGTTCGGCTGT 58.978 50.000 0.00 0.00 0.00 4.40
242 243 0.738389 ACTTTTGGTGTTCGGCTGTG 59.262 50.000 0.00 0.00 0.00 3.66
243 244 0.738389 CTTTTGGTGTTCGGCTGTGT 59.262 50.000 0.00 0.00 0.00 3.72
244 245 0.453793 TTTTGGTGTTCGGCTGTGTG 59.546 50.000 0.00 0.00 0.00 3.82
245 246 1.999071 TTTGGTGTTCGGCTGTGTGC 61.999 55.000 0.00 0.00 41.94 4.57
246 247 2.899838 GGTGTTCGGCTGTGTGCA 60.900 61.111 0.00 0.00 45.15 4.57
247 248 2.260869 GGTGTTCGGCTGTGTGCAT 61.261 57.895 0.00 0.00 45.15 3.96
248 249 1.207593 GTGTTCGGCTGTGTGCATC 59.792 57.895 0.00 0.00 45.15 3.91
249 250 1.965930 TGTTCGGCTGTGTGCATCC 60.966 57.895 0.00 0.00 45.15 3.51
250 251 1.672356 GTTCGGCTGTGTGCATCCT 60.672 57.895 0.00 0.00 45.15 3.24
251 252 0.391130 GTTCGGCTGTGTGCATCCTA 60.391 55.000 0.00 0.00 45.15 2.94
252 253 0.323302 TTCGGCTGTGTGCATCCTAA 59.677 50.000 0.00 0.00 45.15 2.69
253 254 0.541392 TCGGCTGTGTGCATCCTAAT 59.459 50.000 0.00 0.00 45.15 1.73
254 255 1.065491 TCGGCTGTGTGCATCCTAATT 60.065 47.619 0.00 0.00 45.15 1.40
255 256 2.169561 TCGGCTGTGTGCATCCTAATTA 59.830 45.455 0.00 0.00 45.15 1.40
256 257 3.141398 CGGCTGTGTGCATCCTAATTAT 58.859 45.455 0.00 0.00 45.15 1.28
257 258 3.058708 CGGCTGTGTGCATCCTAATTATG 60.059 47.826 0.00 0.00 45.15 1.90
266 267 2.839486 TCCTAATTATGCAGAGGCCG 57.161 50.000 0.00 0.00 40.13 6.13
267 268 1.347707 TCCTAATTATGCAGAGGCCGG 59.652 52.381 0.00 0.00 40.13 6.13
268 269 1.611673 CCTAATTATGCAGAGGCCGGG 60.612 57.143 2.18 0.00 40.13 5.73
269 270 1.072331 CTAATTATGCAGAGGCCGGGT 59.928 52.381 2.18 0.00 40.13 5.28
270 271 0.466189 AATTATGCAGAGGCCGGGTG 60.466 55.000 2.18 0.00 40.13 4.61
271 272 1.635817 ATTATGCAGAGGCCGGGTGT 61.636 55.000 2.18 0.00 40.13 4.16
272 273 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
273 274 2.535485 TATGCAGAGGCCGGGTGTTG 62.535 60.000 2.18 0.00 40.13 3.33
275 276 4.335647 CAGAGGCCGGGTGTTGCT 62.336 66.667 2.18 0.00 0.00 3.91
276 277 4.021925 AGAGGCCGGGTGTTGCTC 62.022 66.667 2.18 0.00 0.00 4.26
277 278 4.329545 GAGGCCGGGTGTTGCTCA 62.330 66.667 2.18 0.00 0.00 4.26
278 279 3.628646 GAGGCCGGGTGTTGCTCAT 62.629 63.158 2.18 0.00 0.00 2.90
279 280 2.252072 GAGGCCGGGTGTTGCTCATA 62.252 60.000 2.18 0.00 0.00 2.15
280 281 1.377987 GGCCGGGTGTTGCTCATAA 60.378 57.895 2.18 0.00 0.00 1.90
281 282 0.751643 GGCCGGGTGTTGCTCATAAT 60.752 55.000 2.18 0.00 0.00 1.28
282 283 0.381801 GCCGGGTGTTGCTCATAATG 59.618 55.000 2.18 0.00 0.00 1.90
283 284 0.381801 CCGGGTGTTGCTCATAATGC 59.618 55.000 0.00 0.00 0.00 3.56
284 285 1.382522 CGGGTGTTGCTCATAATGCT 58.617 50.000 0.00 0.00 0.00 3.79
285 286 1.745087 CGGGTGTTGCTCATAATGCTT 59.255 47.619 0.00 0.00 0.00 3.91
286 287 2.164219 CGGGTGTTGCTCATAATGCTTT 59.836 45.455 0.00 0.00 0.00 3.51
287 288 3.514645 GGGTGTTGCTCATAATGCTTTG 58.485 45.455 0.00 0.00 0.00 2.77
288 289 3.056607 GGGTGTTGCTCATAATGCTTTGT 60.057 43.478 0.00 0.00 0.00 2.83
289 290 4.157656 GGGTGTTGCTCATAATGCTTTGTA 59.842 41.667 0.00 0.00 0.00 2.41
290 291 5.163519 GGGTGTTGCTCATAATGCTTTGTAT 60.164 40.000 0.00 0.00 0.00 2.29
291 292 5.973565 GGTGTTGCTCATAATGCTTTGTATC 59.026 40.000 0.00 0.00 0.00 2.24
292 293 5.973565 GTGTTGCTCATAATGCTTTGTATCC 59.026 40.000 0.00 0.00 0.00 2.59
293 294 5.651576 TGTTGCTCATAATGCTTTGTATCCA 59.348 36.000 0.00 0.00 0.00 3.41
294 295 5.756195 TGCTCATAATGCTTTGTATCCAC 57.244 39.130 0.00 0.00 0.00 4.02
295 296 4.580167 TGCTCATAATGCTTTGTATCCACC 59.420 41.667 0.00 0.00 0.00 4.61
296 297 4.823989 GCTCATAATGCTTTGTATCCACCT 59.176 41.667 0.00 0.00 0.00 4.00
297 298 5.278169 GCTCATAATGCTTTGTATCCACCTG 60.278 44.000 0.00 0.00 0.00 4.00
298 299 6.000246 TCATAATGCTTTGTATCCACCTGA 58.000 37.500 0.00 0.00 0.00 3.86
299 300 6.604171 TCATAATGCTTTGTATCCACCTGAT 58.396 36.000 0.00 0.00 37.49 2.90
300 301 6.487668 TCATAATGCTTTGTATCCACCTGATG 59.512 38.462 0.00 0.00 34.76 3.07
301 302 2.368439 TGCTTTGTATCCACCTGATGC 58.632 47.619 0.00 0.00 36.68 3.91
302 303 2.025981 TGCTTTGTATCCACCTGATGCT 60.026 45.455 0.00 0.00 37.04 3.79
303 304 3.199727 TGCTTTGTATCCACCTGATGCTA 59.800 43.478 0.00 0.00 37.04 3.49
304 305 3.561725 GCTTTGTATCCACCTGATGCTAC 59.438 47.826 0.00 0.00 37.04 3.58
305 306 4.769688 CTTTGTATCCACCTGATGCTACA 58.230 43.478 0.00 0.00 37.04 2.74
306 307 5.371526 CTTTGTATCCACCTGATGCTACAT 58.628 41.667 0.00 0.00 37.04 2.29
307 308 5.372343 TTGTATCCACCTGATGCTACATT 57.628 39.130 0.00 0.00 37.04 2.71
308 309 5.372343 TGTATCCACCTGATGCTACATTT 57.628 39.130 0.00 0.00 37.04 2.32
309 310 5.754782 TGTATCCACCTGATGCTACATTTT 58.245 37.500 0.00 0.00 37.04 1.82
310 311 6.186957 TGTATCCACCTGATGCTACATTTTT 58.813 36.000 0.00 0.00 37.04 1.94
311 312 5.587388 ATCCACCTGATGCTACATTTTTG 57.413 39.130 0.00 0.00 30.54 2.44
312 313 4.661222 TCCACCTGATGCTACATTTTTGA 58.339 39.130 0.00 0.00 0.00 2.69
313 314 4.701651 TCCACCTGATGCTACATTTTTGAG 59.298 41.667 0.00 0.00 0.00 3.02
314 315 4.460382 CCACCTGATGCTACATTTTTGAGT 59.540 41.667 0.00 0.00 0.00 3.41
315 316 5.047802 CCACCTGATGCTACATTTTTGAGTT 60.048 40.000 0.00 0.00 0.00 3.01
316 317 6.150976 CCACCTGATGCTACATTTTTGAGTTA 59.849 38.462 0.00 0.00 0.00 2.24
317 318 7.309133 CCACCTGATGCTACATTTTTGAGTTAA 60.309 37.037 0.00 0.00 0.00 2.01
318 319 8.246180 CACCTGATGCTACATTTTTGAGTTAAT 58.754 33.333 0.00 0.00 0.00 1.40
319 320 9.461312 ACCTGATGCTACATTTTTGAGTTAATA 57.539 29.630 0.00 0.00 0.00 0.98
328 329 8.474006 ACATTTTTGAGTTAATAAAATCGCCC 57.526 30.769 0.00 0.00 32.35 6.13
329 330 8.311109 ACATTTTTGAGTTAATAAAATCGCCCT 58.689 29.630 0.00 0.00 32.35 5.19
330 331 9.150348 CATTTTTGAGTTAATAAAATCGCCCTT 57.850 29.630 0.00 0.00 32.35 3.95
331 332 9.719355 ATTTTTGAGTTAATAAAATCGCCCTTT 57.281 25.926 0.00 0.00 32.35 3.11
335 336 7.857569 TGAGTTAATAAAATCGCCCTTTATCG 58.142 34.615 0.00 0.00 32.35 2.92
336 337 7.041644 TGAGTTAATAAAATCGCCCTTTATCGG 60.042 37.037 0.00 0.00 32.35 4.18
337 338 6.993902 AGTTAATAAAATCGCCCTTTATCGGA 59.006 34.615 0.00 0.00 30.41 4.55
338 339 7.499895 AGTTAATAAAATCGCCCTTTATCGGAA 59.500 33.333 0.00 0.00 30.41 4.30
339 340 6.702716 AATAAAATCGCCCTTTATCGGAAA 57.297 33.333 0.00 0.00 30.41 3.13
340 341 6.702716 ATAAAATCGCCCTTTATCGGAAAA 57.297 33.333 0.00 0.00 0.00 2.29
341 342 5.394224 AAAATCGCCCTTTATCGGAAAAA 57.606 34.783 0.00 0.00 0.00 1.94
365 366 8.891671 AAAAGCAATCTTGTATTGAAATGTGT 57.108 26.923 2.01 0.00 31.78 3.72
366 367 7.878477 AAGCAATCTTGTATTGAAATGTGTG 57.122 32.000 2.01 0.00 0.00 3.82
367 368 7.218228 AGCAATCTTGTATTGAAATGTGTGA 57.782 32.000 2.01 0.00 0.00 3.58
368 369 7.833786 AGCAATCTTGTATTGAAATGTGTGAT 58.166 30.769 2.01 0.00 0.00 3.06
369 370 7.758076 AGCAATCTTGTATTGAAATGTGTGATG 59.242 33.333 2.01 0.00 0.00 3.07
370 371 7.543172 GCAATCTTGTATTGAAATGTGTGATGT 59.457 33.333 2.01 0.00 0.00 3.06
371 372 9.414295 CAATCTTGTATTGAAATGTGTGATGTT 57.586 29.630 0.00 0.00 0.00 2.71
374 375 9.283768 TCTTGTATTGAAATGTGTGATGTTACT 57.716 29.630 0.00 0.00 0.00 2.24
377 378 9.719355 TGTATTGAAATGTGTGATGTTACTAGT 57.281 29.630 0.00 0.00 0.00 2.57
379 380 8.846943 ATTGAAATGTGTGATGTTACTAGTCA 57.153 30.769 0.00 0.00 0.00 3.41
380 381 8.669946 TTGAAATGTGTGATGTTACTAGTCAA 57.330 30.769 0.00 0.00 0.00 3.18
381 382 8.310406 TGAAATGTGTGATGTTACTAGTCAAG 57.690 34.615 0.00 0.00 0.00 3.02
382 383 7.931407 TGAAATGTGTGATGTTACTAGTCAAGT 59.069 33.333 0.00 0.00 42.62 3.16
383 384 8.677148 AAATGTGTGATGTTACTAGTCAAGTT 57.323 30.769 0.00 0.00 39.80 2.66
384 385 9.772973 AAATGTGTGATGTTACTAGTCAAGTTA 57.227 29.630 0.00 0.00 39.80 2.24
385 386 8.758633 ATGTGTGATGTTACTAGTCAAGTTAC 57.241 34.615 0.00 0.00 39.80 2.50
386 387 7.948357 TGTGTGATGTTACTAGTCAAGTTACT 58.052 34.615 0.00 0.00 38.33 2.24
387 388 8.080417 TGTGTGATGTTACTAGTCAAGTTACTC 58.920 37.037 0.00 0.00 38.33 2.59
388 389 7.541437 GTGTGATGTTACTAGTCAAGTTACTCC 59.459 40.741 0.00 0.00 38.33 3.85
389 390 7.034397 GTGATGTTACTAGTCAAGTTACTCCC 58.966 42.308 0.00 0.00 38.33 4.30
390 391 6.722590 TGATGTTACTAGTCAAGTTACTCCCA 59.277 38.462 0.00 0.00 38.33 4.37
391 392 7.399191 TGATGTTACTAGTCAAGTTACTCCCAT 59.601 37.037 0.00 0.00 38.33 4.00
392 393 7.549147 TGTTACTAGTCAAGTTACTCCCATT 57.451 36.000 0.00 0.00 38.33 3.16
393 394 7.383687 TGTTACTAGTCAAGTTACTCCCATTG 58.616 38.462 0.00 0.00 38.33 2.82
394 395 7.015877 TGTTACTAGTCAAGTTACTCCCATTGT 59.984 37.037 0.00 0.00 38.33 2.71
395 396 5.794894 ACTAGTCAAGTTACTCCCATTGTG 58.205 41.667 0.00 0.00 33.35 3.33
396 397 4.974645 AGTCAAGTTACTCCCATTGTGA 57.025 40.909 0.00 0.00 0.00 3.58
397 398 4.642429 AGTCAAGTTACTCCCATTGTGAC 58.358 43.478 3.68 3.68 35.48 3.67
398 399 4.348168 AGTCAAGTTACTCCCATTGTGACT 59.652 41.667 7.54 7.54 39.60 3.41
399 400 5.542635 AGTCAAGTTACTCCCATTGTGACTA 59.457 40.000 10.69 0.00 41.88 2.59
400 401 5.869888 GTCAAGTTACTCCCATTGTGACTAG 59.130 44.000 4.45 0.00 33.98 2.57
401 402 5.542635 TCAAGTTACTCCCATTGTGACTAGT 59.457 40.000 0.00 0.00 33.98 2.57
402 403 5.662674 AGTTACTCCCATTGTGACTAGTC 57.337 43.478 16.32 16.32 33.46 2.59
403 404 5.334421 AGTTACTCCCATTGTGACTAGTCT 58.666 41.667 23.01 0.19 33.46 3.24
404 405 6.491383 AGTTACTCCCATTGTGACTAGTCTA 58.509 40.000 23.01 10.02 33.46 2.59
405 406 6.952358 AGTTACTCCCATTGTGACTAGTCTAA 59.048 38.462 23.01 17.50 33.46 2.10
406 407 5.662674 ACTCCCATTGTGACTAGTCTAAC 57.337 43.478 23.01 14.37 0.00 2.34
407 408 5.084519 ACTCCCATTGTGACTAGTCTAACA 58.915 41.667 23.01 16.72 0.00 2.41
408 409 5.721960 ACTCCCATTGTGACTAGTCTAACAT 59.278 40.000 23.01 7.81 0.00 2.71
409 410 6.127310 ACTCCCATTGTGACTAGTCTAACATC 60.127 42.308 23.01 7.80 0.00 3.06
410 411 5.719563 TCCCATTGTGACTAGTCTAACATCA 59.280 40.000 23.01 7.22 0.00 3.07
411 412 5.812642 CCCATTGTGACTAGTCTAACATCAC 59.187 44.000 23.01 12.22 40.08 3.06
412 413 6.398095 CCATTGTGACTAGTCTAACATCACA 58.602 40.000 23.01 14.56 45.90 3.58
413 414 6.311445 CCATTGTGACTAGTCTAACATCACAC 59.689 42.308 23.01 10.87 46.88 3.82
414 415 6.399639 TTGTGACTAGTCTAACATCACACA 57.600 37.500 23.01 13.21 46.88 3.72
415 416 6.590234 TGTGACTAGTCTAACATCACACAT 57.410 37.500 23.01 0.00 43.48 3.21
416 417 7.696992 TGTGACTAGTCTAACATCACACATA 57.303 36.000 23.01 0.00 43.48 2.29
417 418 8.293699 TGTGACTAGTCTAACATCACACATAT 57.706 34.615 23.01 0.00 43.48 1.78
418 419 8.406297 TGTGACTAGTCTAACATCACACATATC 58.594 37.037 23.01 0.00 43.48 1.63
419 420 8.406297 GTGACTAGTCTAACATCACACATATCA 58.594 37.037 23.01 0.00 39.57 2.15
420 421 8.966868 TGACTAGTCTAACATCACACATATCAA 58.033 33.333 23.01 0.00 0.00 2.57
421 422 9.457110 GACTAGTCTAACATCACACATATCAAG 57.543 37.037 15.91 0.00 0.00 3.02
422 423 8.417106 ACTAGTCTAACATCACACATATCAAGG 58.583 37.037 0.00 0.00 0.00 3.61
423 424 6.051717 AGTCTAACATCACACATATCAAGGC 58.948 40.000 0.00 0.00 0.00 4.35
424 425 5.817296 GTCTAACATCACACATATCAAGGCA 59.183 40.000 0.00 0.00 0.00 4.75
425 426 6.316140 GTCTAACATCACACATATCAAGGCAA 59.684 38.462 0.00 0.00 0.00 4.52
426 427 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
427 428 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
428 429 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
429 430 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
430 431 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
431 432 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
432 433 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
433 434 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
434 435 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
435 436 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
436 437 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
437 438 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
438 439 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
439 440 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
440 441 4.651045 TCAAGGCAAGATGAGTCTATAGCA 59.349 41.667 0.00 0.00 33.30 3.49
441 442 5.306419 TCAAGGCAAGATGAGTCTATAGCAT 59.694 40.000 0.00 0.00 33.30 3.79
442 443 6.494835 TCAAGGCAAGATGAGTCTATAGCATA 59.505 38.462 0.00 0.00 33.30 3.14
443 444 6.924913 AGGCAAGATGAGTCTATAGCATAA 57.075 37.500 0.00 0.00 33.30 1.90
444 445 7.493499 AGGCAAGATGAGTCTATAGCATAAT 57.507 36.000 0.00 0.00 33.30 1.28
445 446 8.601047 AGGCAAGATGAGTCTATAGCATAATA 57.399 34.615 0.00 0.00 33.30 0.98
446 447 9.040259 AGGCAAGATGAGTCTATAGCATAATAA 57.960 33.333 0.00 0.00 33.30 1.40
447 448 9.658799 GGCAAGATGAGTCTATAGCATAATAAA 57.341 33.333 0.00 0.00 33.30 1.40
471 472 8.856153 AATGAAGTATTGTATGTTACCACACA 57.144 30.769 0.00 0.00 35.03 3.72
472 473 9.461312 AATGAAGTATTGTATGTTACCACACAT 57.539 29.630 0.00 0.00 40.61 3.21
483 484 9.649167 GTATGTTACCACACATATATTACTCCC 57.351 37.037 0.00 0.00 40.85 4.30
484 485 7.069877 TGTTACCACACATATATTACTCCCC 57.930 40.000 0.00 0.00 0.00 4.81
485 486 6.616137 TGTTACCACACATATATTACTCCCCA 59.384 38.462 0.00 0.00 0.00 4.96
486 487 5.562298 ACCACACATATATTACTCCCCAC 57.438 43.478 0.00 0.00 0.00 4.61
487 488 5.224441 ACCACACATATATTACTCCCCACT 58.776 41.667 0.00 0.00 0.00 4.00
488 489 6.387127 ACCACACATATATTACTCCCCACTA 58.613 40.000 0.00 0.00 0.00 2.74
489 490 7.023120 ACCACACATATATTACTCCCCACTAT 58.977 38.462 0.00 0.00 0.00 2.12
490 491 8.181524 ACCACACATATATTACTCCCCACTATA 58.818 37.037 0.00 0.00 0.00 1.31
491 492 9.042450 CCACACATATATTACTCCCCACTATAA 57.958 37.037 0.00 0.00 0.00 0.98
500 501 8.865244 ATTACTCCCCACTATAAAGGAAGTAA 57.135 34.615 13.95 13.95 37.36 2.24
501 502 6.556974 ACTCCCCACTATAAAGGAAGTAAC 57.443 41.667 0.00 0.00 0.00 2.50
502 503 6.027482 ACTCCCCACTATAAAGGAAGTAACA 58.973 40.000 0.00 0.00 0.00 2.41
503 504 6.677076 ACTCCCCACTATAAAGGAAGTAACAT 59.323 38.462 0.00 0.00 0.00 2.71
504 505 7.847848 ACTCCCCACTATAAAGGAAGTAACATA 59.152 37.037 0.00 0.00 0.00 2.29
505 506 8.258850 TCCCCACTATAAAGGAAGTAACATAG 57.741 38.462 0.00 0.00 0.00 2.23
506 507 7.847848 TCCCCACTATAAAGGAAGTAACATAGT 59.152 37.037 0.00 0.00 31.15 2.12
507 508 7.931948 CCCCACTATAAAGGAAGTAACATAGTG 59.068 40.741 10.98 10.98 42.53 2.74
508 509 8.483758 CCCACTATAAAGGAAGTAACATAGTGT 58.516 37.037 14.88 0.00 41.86 3.55
509 510 9.886132 CCACTATAAAGGAAGTAACATAGTGTT 57.114 33.333 14.88 0.67 41.86 3.32
524 525 8.758633 AACATAGTGTTACTACTCATTGTGAC 57.241 34.615 0.00 0.00 39.09 3.67
525 526 8.123639 ACATAGTGTTACTACTCATTGTGACT 57.876 34.615 0.00 0.00 32.84 3.41
526 527 9.239551 ACATAGTGTTACTACTCATTGTGACTA 57.760 33.333 0.00 0.00 32.84 2.59
527 528 9.723447 CATAGTGTTACTACTCATTGTGACTAG 57.277 37.037 0.00 0.00 32.84 2.57
528 529 7.762588 AGTGTTACTACTCATTGTGACTAGT 57.237 36.000 0.00 0.00 33.01 2.57
529 530 7.818642 AGTGTTACTACTCATTGTGACTAGTC 58.181 38.462 16.32 16.32 31.55 2.59
530 531 7.666388 AGTGTTACTACTCATTGTGACTAGTCT 59.334 37.037 23.01 0.19 31.55 3.24
545 546 8.334734 TGTGACTAGTCTAAGTTAGGATAAGGT 58.665 37.037 23.01 2.79 0.00 3.50
546 547 8.623030 GTGACTAGTCTAAGTTAGGATAAGGTG 58.377 40.741 23.01 0.00 0.00 4.00
549 550 6.101274 AGTCTAAGTTAGGATAAGGTGGGA 57.899 41.667 10.02 0.00 0.00 4.37
633 640 4.034048 GCGAGAAATCAGCCGATCTAAAAA 59.966 41.667 0.00 0.00 0.00 1.94
781 791 0.037605 ACAACGTGATCCTCCGAACC 60.038 55.000 0.00 0.00 0.00 3.62
810 843 8.854979 TTGCATCACATTATAAAATACACAGC 57.145 30.769 0.00 0.00 0.00 4.40
816 849 9.448438 TCACATTATAAAATACACAGCAGAAGT 57.552 29.630 0.00 0.00 0.00 3.01
847 880 3.895041 ACGGTCCATGGTTCAAGAAAAAT 59.105 39.130 12.58 0.00 0.00 1.82
965 999 1.446792 CACACCACTAGCTCAGCGG 60.447 63.158 0.00 0.00 32.23 5.52
1170 1204 2.438795 GTCCTCTCCGACGCCTCT 60.439 66.667 0.00 0.00 0.00 3.69
1680 1729 2.504367 GCCAAGTTTAGAGGCTGAACA 58.496 47.619 0.00 0.00 44.92 3.18
1685 1734 2.102588 AGTTTAGAGGCTGAACACACGT 59.897 45.455 0.00 0.00 33.30 4.49
1708 1757 1.002624 TTGATGGGTCCTTCACGGC 60.003 57.895 5.25 0.00 31.27 5.68
1716 1765 2.047274 CCTTCACGGCGTGATGGT 60.047 61.111 43.00 12.64 46.27 3.55
1793 1842 6.675026 ACTGAAATGATCAACAGAACATGTG 58.325 36.000 24.36 0.00 43.00 3.21
1816 1865 4.167268 CCTTACGCTCTGTAGTGAAAGAC 58.833 47.826 0.00 0.00 36.68 3.01
1868 1917 8.306680 TCAACTTTGAGTTACATGTTACTAGC 57.693 34.615 16.96 7.06 36.03 3.42
1877 1929 8.999220 AGTTACATGTTACTAGCCTTAAGTTC 57.001 34.615 15.55 0.00 0.00 3.01
1930 1982 2.542178 GAGTGTGTGCGTGTTGTAATCA 59.458 45.455 0.00 0.00 0.00 2.57
2047 2099 1.106285 GCTTGGATGGGTGGATTCAC 58.894 55.000 0.00 0.00 42.91 3.18
2058 2110 0.396435 TGGATTCACAACCGCTCTGT 59.604 50.000 0.00 0.00 0.00 3.41
2066 2118 0.949105 CAACCGCTCTGTGTACCACC 60.949 60.000 0.00 0.00 32.73 4.61
2215 2270 9.011095 AGCTAGTTTTGAAATAGAAAACCCTAC 57.989 33.333 0.00 0.00 42.03 3.18
2251 2308 7.333528 TGTTGAATGTAGCCCATTTTAGATC 57.666 36.000 1.19 0.00 43.87 2.75
2339 2396 3.998913 TGATTGATGGCAAGTAGGTCA 57.001 42.857 0.00 0.00 37.45 4.02
2401 2458 1.744014 CTTTTGCTGGCCAAGTGCT 59.256 52.632 15.70 0.00 40.92 4.40
2422 2479 4.687219 GCTAGGAGATATGCACCTGGTTTT 60.687 45.833 0.00 0.00 37.97 2.43
2428 2485 0.250901 ATGCACCTGGTTTTCGAGCT 60.251 50.000 0.00 0.00 0.00 4.09
2460 2517 1.451028 GATGCACTCACTGGGCCTC 60.451 63.158 4.53 0.00 46.54 4.70
2474 2531 1.741770 GCCTCGCGTTGGAAGTGAT 60.742 57.895 21.17 0.00 0.00 3.06
2475 2532 0.459585 GCCTCGCGTTGGAAGTGATA 60.460 55.000 21.17 0.00 0.00 2.15
2478 2535 1.320555 CTCGCGTTGGAAGTGATAACG 59.679 52.381 5.77 0.00 39.57 3.18
2481 2538 2.277084 GCGTTGGAAGTGATAACGGAT 58.723 47.619 10.20 0.00 37.35 4.18
2490 2547 2.128035 GTGATAACGGATGAGCGGAAG 58.872 52.381 0.00 0.00 0.00 3.46
2513 2570 4.010349 CAGTTACTTCCTAAAGGCAAGGG 58.990 47.826 10.81 0.00 36.78 3.95
2515 2572 1.755200 ACTTCCTAAAGGCAAGGGGA 58.245 50.000 10.81 0.00 36.78 4.81
2517 2574 1.354368 CTTCCTAAAGGCAAGGGGACA 59.646 52.381 1.37 0.00 34.66 4.02
2536 2593 4.195416 GACAGTCCCAATTGAGATTCTCC 58.805 47.826 7.12 0.00 0.00 3.71
2559 2616 2.719979 GCAATGGCAGAGGCGATG 59.280 61.111 0.00 0.00 38.56 3.84
2580 2637 2.224549 GGAGTCTCCATATCGTCGACAG 59.775 54.545 17.16 8.67 36.28 3.51
2602 2659 0.397254 AGCCCGCTGGTATGAGTACT 60.397 55.000 0.00 0.00 0.00 2.73
2603 2660 0.249489 GCCCGCTGGTATGAGTACTG 60.249 60.000 0.00 0.00 0.00 2.74
2609 2666 1.338337 CTGGTATGAGTACTGCTCCCG 59.662 57.143 0.00 0.00 43.48 5.14
2611 2668 1.033574 GTATGAGTACTGCTCCCGCT 58.966 55.000 0.00 0.00 43.48 5.52
2612 2669 1.409427 GTATGAGTACTGCTCCCGCTT 59.591 52.381 0.00 0.00 43.48 4.68
2620 2677 4.070552 GCTCCCGCTTGTCCTCGT 62.071 66.667 0.00 0.00 0.00 4.18
2627 2684 1.227002 GCTTGTCCTCGTCGGATCC 60.227 63.158 0.00 0.00 45.44 3.36
2663 2720 3.562141 CCGGTGAATTTGCGTATTATCCA 59.438 43.478 0.00 0.00 0.00 3.41
2667 2724 5.277828 GGTGAATTTGCGTATTATCCAGGAC 60.278 44.000 0.00 0.00 0.00 3.85
2673 2730 1.201647 CGTATTATCCAGGACGCCGAT 59.798 52.381 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.543031 GCATAGACCACATACGAAGCGA 60.543 50.000 0.00 0.00 0.00 4.93
5 6 3.099267 AGCATAGACCACATACGAAGC 57.901 47.619 0.00 0.00 0.00 3.86
6 7 5.183014 TGTAGCATAGACCACATACGAAG 57.817 43.478 0.00 0.00 0.00 3.79
7 8 5.345702 GTTGTAGCATAGACCACATACGAA 58.654 41.667 0.00 0.00 0.00 3.85
8 9 4.496840 CGTTGTAGCATAGACCACATACGA 60.497 45.833 0.00 0.00 32.40 3.43
9 10 3.729217 CGTTGTAGCATAGACCACATACG 59.271 47.826 0.00 0.00 0.00 3.06
10 11 4.928601 TCGTTGTAGCATAGACCACATAC 58.071 43.478 0.00 0.00 0.00 2.39
11 12 4.499188 GCTCGTTGTAGCATAGACCACATA 60.499 45.833 0.00 0.00 42.30 2.29
12 13 3.738281 GCTCGTTGTAGCATAGACCACAT 60.738 47.826 0.00 0.00 42.30 3.21
13 14 2.416836 GCTCGTTGTAGCATAGACCACA 60.417 50.000 0.00 0.00 42.30 4.17
14 15 2.194271 GCTCGTTGTAGCATAGACCAC 58.806 52.381 0.00 0.00 42.30 4.16
15 16 2.579207 GCTCGTTGTAGCATAGACCA 57.421 50.000 0.00 0.00 42.30 4.02
23 24 0.528470 AGACCTCTGCTCGTTGTAGC 59.472 55.000 0.00 0.00 43.08 3.58
24 25 3.427773 GGTTAGACCTCTGCTCGTTGTAG 60.428 52.174 0.00 0.00 34.73 2.74
25 26 2.490903 GGTTAGACCTCTGCTCGTTGTA 59.509 50.000 0.00 0.00 34.73 2.41
26 27 1.272769 GGTTAGACCTCTGCTCGTTGT 59.727 52.381 0.00 0.00 34.73 3.32
27 28 1.732732 CGGTTAGACCTCTGCTCGTTG 60.733 57.143 0.00 0.00 35.66 4.10
28 29 0.526662 CGGTTAGACCTCTGCTCGTT 59.473 55.000 0.00 0.00 35.66 3.85
29 30 1.935327 GCGGTTAGACCTCTGCTCGT 61.935 60.000 0.00 0.00 35.66 4.18
30 31 1.226717 GCGGTTAGACCTCTGCTCG 60.227 63.158 0.00 0.00 35.66 5.03
31 32 0.179124 CAGCGGTTAGACCTCTGCTC 60.179 60.000 4.36 0.00 43.22 4.26
32 33 1.893786 CAGCGGTTAGACCTCTGCT 59.106 57.895 4.36 0.00 43.22 4.24
33 34 4.504132 CAGCGGTTAGACCTCTGC 57.496 61.111 4.36 0.00 43.22 4.26
35 36 1.629043 TGAACAGCGGTTAGACCTCT 58.371 50.000 1.05 0.00 37.36 3.69
36 37 2.338500 CTTGAACAGCGGTTAGACCTC 58.662 52.381 1.05 0.00 37.36 3.85
37 38 1.002087 CCTTGAACAGCGGTTAGACCT 59.998 52.381 1.05 0.00 37.36 3.85
38 39 1.439679 CCTTGAACAGCGGTTAGACC 58.560 55.000 1.05 0.00 37.36 3.85
39 40 0.796927 GCCTTGAACAGCGGTTAGAC 59.203 55.000 1.05 0.00 37.36 2.59
40 41 3.226884 GCCTTGAACAGCGGTTAGA 57.773 52.632 1.05 0.00 37.36 2.10
47 48 0.882927 TACACACCGCCTTGAACAGC 60.883 55.000 0.00 0.00 0.00 4.40
48 49 0.865769 GTACACACCGCCTTGAACAG 59.134 55.000 0.00 0.00 0.00 3.16
49 50 0.876777 CGTACACACCGCCTTGAACA 60.877 55.000 0.00 0.00 0.00 3.18
50 51 1.857364 CGTACACACCGCCTTGAAC 59.143 57.895 0.00 0.00 0.00 3.18
51 52 1.957186 GCGTACACACCGCCTTGAA 60.957 57.895 0.00 0.00 45.20 2.69
52 53 2.356553 GCGTACACACCGCCTTGA 60.357 61.111 0.00 0.00 45.20 3.02
58 59 3.408020 CCAACCGCGTACACACCG 61.408 66.667 4.92 0.00 0.00 4.94
59 60 2.025418 CTCCAACCGCGTACACACC 61.025 63.158 4.92 0.00 0.00 4.16
60 61 2.664436 GCTCCAACCGCGTACACAC 61.664 63.158 4.92 0.00 0.00 3.82
61 62 2.356553 GCTCCAACCGCGTACACA 60.357 61.111 4.92 0.00 0.00 3.72
62 63 2.356553 TGCTCCAACCGCGTACAC 60.357 61.111 4.92 0.00 0.00 2.90
63 64 2.048597 CTGCTCCAACCGCGTACA 60.049 61.111 4.92 0.00 0.00 2.90
64 65 2.813908 CCTGCTCCAACCGCGTAC 60.814 66.667 4.92 0.00 0.00 3.67
65 66 3.307906 ACCTGCTCCAACCGCGTA 61.308 61.111 4.92 0.00 0.00 4.42
66 67 4.988598 CACCTGCTCCAACCGCGT 62.989 66.667 4.92 0.00 0.00 6.01
77 78 2.465055 AAACCTCCGTAGCCACCTGC 62.465 60.000 0.00 0.00 41.71 4.85
78 79 0.036306 AAAACCTCCGTAGCCACCTG 59.964 55.000 0.00 0.00 0.00 4.00
79 80 0.769247 AAAAACCTCCGTAGCCACCT 59.231 50.000 0.00 0.00 0.00 4.00
80 81 2.079158 GTAAAAACCTCCGTAGCCACC 58.921 52.381 0.00 0.00 0.00 4.61
81 82 2.079158 GGTAAAAACCTCCGTAGCCAC 58.921 52.381 0.00 0.00 0.00 5.01
82 83 1.003464 GGGTAAAAACCTCCGTAGCCA 59.997 52.381 0.00 0.00 34.83 4.75
83 84 1.003464 TGGGTAAAAACCTCCGTAGCC 59.997 52.381 0.00 0.00 35.19 3.93
84 85 2.477845 TGGGTAAAAACCTCCGTAGC 57.522 50.000 0.00 0.00 0.00 3.58
85 86 3.742385 TGTTGGGTAAAAACCTCCGTAG 58.258 45.455 0.00 0.00 0.00 3.51
86 87 3.853355 TGTTGGGTAAAAACCTCCGTA 57.147 42.857 0.00 0.00 0.00 4.02
87 88 2.732844 TGTTGGGTAAAAACCTCCGT 57.267 45.000 0.00 0.00 0.00 4.69
88 89 2.230266 CCATGTTGGGTAAAAACCTCCG 59.770 50.000 0.00 0.00 32.67 4.63
89 90 3.953712 CCATGTTGGGTAAAAACCTCC 57.046 47.619 0.00 0.00 32.67 4.30
101 102 2.070305 TATGATGCCACCCATGTTGG 57.930 50.000 6.28 6.28 37.25 3.77
102 103 2.101249 GGTTATGATGCCACCCATGTTG 59.899 50.000 0.00 0.00 33.29 3.33
103 104 2.024080 AGGTTATGATGCCACCCATGTT 60.024 45.455 0.00 0.00 33.29 2.71
104 105 1.570501 AGGTTATGATGCCACCCATGT 59.429 47.619 0.00 0.00 33.29 3.21
105 106 2.233271 GAGGTTATGATGCCACCCATG 58.767 52.381 0.00 0.00 33.29 3.66
106 107 1.145738 GGAGGTTATGATGCCACCCAT 59.854 52.381 0.00 0.00 36.70 4.00
107 108 0.550914 GGAGGTTATGATGCCACCCA 59.449 55.000 0.00 0.00 30.64 4.51
108 109 0.535102 CGGAGGTTATGATGCCACCC 60.535 60.000 0.00 0.00 32.83 4.61
109 110 0.468226 TCGGAGGTTATGATGCCACC 59.532 55.000 0.00 0.00 33.06 4.61
110 111 2.417719 GATCGGAGGTTATGATGCCAC 58.582 52.381 0.00 0.00 0.00 5.01
111 112 1.000843 CGATCGGAGGTTATGATGCCA 59.999 52.381 7.38 0.00 0.00 4.92
112 113 1.673033 CCGATCGGAGGTTATGATGCC 60.673 57.143 30.62 0.00 37.50 4.40
113 114 1.000955 ACCGATCGGAGGTTATGATGC 59.999 52.381 39.55 0.00 39.29 3.91
114 115 2.352814 GGACCGATCGGAGGTTATGATG 60.353 54.545 39.55 9.57 43.01 3.07
115 116 1.893801 GGACCGATCGGAGGTTATGAT 59.106 52.381 39.55 14.76 43.01 2.45
116 117 1.325355 GGACCGATCGGAGGTTATGA 58.675 55.000 39.55 0.00 43.01 2.15
117 118 1.037493 TGGACCGATCGGAGGTTATG 58.963 55.000 39.55 11.67 43.01 1.90
118 119 1.893801 GATGGACCGATCGGAGGTTAT 59.106 52.381 39.55 23.42 43.01 1.89
119 120 1.133575 AGATGGACCGATCGGAGGTTA 60.134 52.381 39.55 20.07 43.01 2.85
120 121 0.397254 AGATGGACCGATCGGAGGTT 60.397 55.000 39.55 18.46 43.01 3.50
121 122 0.824182 GAGATGGACCGATCGGAGGT 60.824 60.000 39.55 18.88 46.16 3.85
122 123 0.823769 TGAGATGGACCGATCGGAGG 60.824 60.000 39.55 14.81 38.96 4.30
123 124 0.312416 GTGAGATGGACCGATCGGAG 59.688 60.000 39.55 15.60 38.96 4.63
124 125 1.107538 GGTGAGATGGACCGATCGGA 61.108 60.000 39.55 19.09 38.96 4.55
125 126 1.109920 AGGTGAGATGGACCGATCGG 61.110 60.000 32.20 32.20 38.64 4.18
126 127 0.747255 AAGGTGAGATGGACCGATCG 59.253 55.000 8.51 8.51 38.64 3.69
127 128 2.799917 CGAAAGGTGAGATGGACCGATC 60.800 54.545 0.00 0.00 38.64 3.69
128 129 1.137086 CGAAAGGTGAGATGGACCGAT 59.863 52.381 0.00 0.00 38.64 4.18
129 130 0.530744 CGAAAGGTGAGATGGACCGA 59.469 55.000 0.00 0.00 38.64 4.69
130 131 0.530744 TCGAAAGGTGAGATGGACCG 59.469 55.000 0.00 0.00 38.64 4.79
131 132 1.275291 TGTCGAAAGGTGAGATGGACC 59.725 52.381 0.00 0.00 0.00 4.46
132 133 2.743636 TGTCGAAAGGTGAGATGGAC 57.256 50.000 0.00 0.00 0.00 4.02
133 134 3.384789 CCTATGTCGAAAGGTGAGATGGA 59.615 47.826 0.00 0.00 0.00 3.41
134 135 3.722147 CCTATGTCGAAAGGTGAGATGG 58.278 50.000 0.00 0.00 0.00 3.51
135 136 3.126831 GCCTATGTCGAAAGGTGAGATG 58.873 50.000 10.48 0.00 35.16 2.90
136 137 2.766263 TGCCTATGTCGAAAGGTGAGAT 59.234 45.455 10.48 0.00 35.16 2.75
137 138 2.094182 GTGCCTATGTCGAAAGGTGAGA 60.094 50.000 10.48 0.00 35.16 3.27
138 139 2.271800 GTGCCTATGTCGAAAGGTGAG 58.728 52.381 10.48 0.00 35.16 3.51
139 140 1.621317 TGTGCCTATGTCGAAAGGTGA 59.379 47.619 10.48 0.00 35.16 4.02
140 141 2.002586 CTGTGCCTATGTCGAAAGGTG 58.997 52.381 10.48 0.00 35.16 4.00
141 142 1.623811 ACTGTGCCTATGTCGAAAGGT 59.376 47.619 10.48 0.00 35.16 3.50
142 143 2.002586 CACTGTGCCTATGTCGAAAGG 58.997 52.381 0.00 5.55 35.86 3.11
143 144 2.668457 GACACTGTGCCTATGTCGAAAG 59.332 50.000 7.90 0.00 33.94 2.62
144 145 2.683968 GACACTGTGCCTATGTCGAAA 58.316 47.619 7.90 0.00 33.94 3.46
145 146 2.363788 GACACTGTGCCTATGTCGAA 57.636 50.000 7.90 0.00 33.94 3.71
148 149 0.246635 ACCGACACTGTGCCTATGTC 59.753 55.000 7.90 0.00 39.50 3.06
149 150 0.246635 GACCGACACTGTGCCTATGT 59.753 55.000 7.90 0.00 0.00 2.29
150 151 0.532573 AGACCGACACTGTGCCTATG 59.467 55.000 7.90 0.00 0.00 2.23
151 152 2.139323 TAGACCGACACTGTGCCTAT 57.861 50.000 7.90 0.00 0.00 2.57
152 153 2.139323 ATAGACCGACACTGTGCCTA 57.861 50.000 7.90 2.83 0.00 3.93
153 154 2.025155 CTATAGACCGACACTGTGCCT 58.975 52.381 7.90 0.66 0.00 4.75
154 155 1.067212 CCTATAGACCGACACTGTGCC 59.933 57.143 7.90 0.00 0.00 5.01
155 156 2.022195 TCCTATAGACCGACACTGTGC 58.978 52.381 7.90 0.00 0.00 4.57
156 157 3.694535 GTCCTATAGACCGACACTGTG 57.305 52.381 6.19 6.19 39.84 3.66
166 167 6.171921 TCGGCAATAGTAGAGTCCTATAGAC 58.828 44.000 0.00 0.00 46.71 2.59
167 168 6.370186 TCGGCAATAGTAGAGTCCTATAGA 57.630 41.667 0.00 0.00 0.00 1.98
168 169 7.633193 AATCGGCAATAGTAGAGTCCTATAG 57.367 40.000 0.00 0.00 0.00 1.31
169 170 7.450634 ACAAATCGGCAATAGTAGAGTCCTATA 59.549 37.037 0.00 0.00 0.00 1.31
170 171 6.267928 ACAAATCGGCAATAGTAGAGTCCTAT 59.732 38.462 0.00 0.00 0.00 2.57
171 172 5.597182 ACAAATCGGCAATAGTAGAGTCCTA 59.403 40.000 0.00 0.00 0.00 2.94
172 173 4.406003 ACAAATCGGCAATAGTAGAGTCCT 59.594 41.667 0.00 0.00 0.00 3.85
173 174 4.694339 ACAAATCGGCAATAGTAGAGTCC 58.306 43.478 0.00 0.00 0.00 3.85
174 175 4.441415 CGACAAATCGGCAATAGTAGAGTC 59.559 45.833 0.00 0.00 44.99 3.36
175 176 4.360563 CGACAAATCGGCAATAGTAGAGT 58.639 43.478 0.00 0.00 44.99 3.24
176 177 4.956034 CGACAAATCGGCAATAGTAGAG 57.044 45.455 0.00 0.00 44.99 2.43
189 190 7.391016 CAGAAGAAAACAAAAACCGACAAATC 58.609 34.615 0.00 0.00 0.00 2.17
190 191 6.312672 CCAGAAGAAAACAAAAACCGACAAAT 59.687 34.615 0.00 0.00 0.00 2.32
191 192 5.635700 CCAGAAGAAAACAAAAACCGACAAA 59.364 36.000 0.00 0.00 0.00 2.83
192 193 5.164954 CCAGAAGAAAACAAAAACCGACAA 58.835 37.500 0.00 0.00 0.00 3.18
193 194 4.218852 ACCAGAAGAAAACAAAAACCGACA 59.781 37.500 0.00 0.00 0.00 4.35
194 195 4.740268 ACCAGAAGAAAACAAAAACCGAC 58.260 39.130 0.00 0.00 0.00 4.79
195 196 5.164954 CAACCAGAAGAAAACAAAAACCGA 58.835 37.500 0.00 0.00 0.00 4.69
196 197 4.926832 ACAACCAGAAGAAAACAAAAACCG 59.073 37.500 0.00 0.00 0.00 4.44
197 198 5.929415 TGACAACCAGAAGAAAACAAAAACC 59.071 36.000 0.00 0.00 0.00 3.27
198 199 7.049140 CTGACAACCAGAAGAAAACAAAAAC 57.951 36.000 0.00 0.00 45.78 2.43
212 213 3.016736 ACACCAAAAGTCTGACAACCAG 58.983 45.455 10.88 0.00 44.27 4.00
213 214 3.080300 ACACCAAAAGTCTGACAACCA 57.920 42.857 10.88 0.00 0.00 3.67
214 215 3.486875 CGAACACCAAAAGTCTGACAACC 60.487 47.826 10.88 0.00 0.00 3.77
215 216 3.486875 CCGAACACCAAAAGTCTGACAAC 60.487 47.826 10.88 0.00 0.00 3.32
216 217 2.680841 CCGAACACCAAAAGTCTGACAA 59.319 45.455 10.88 0.00 0.00 3.18
217 218 2.285083 CCGAACACCAAAAGTCTGACA 58.715 47.619 10.88 0.00 0.00 3.58
218 219 1.002792 GCCGAACACCAAAAGTCTGAC 60.003 52.381 0.00 0.00 0.00 3.51
219 220 1.134220 AGCCGAACACCAAAAGTCTGA 60.134 47.619 0.00 0.00 0.00 3.27
220 221 1.002468 CAGCCGAACACCAAAAGTCTG 60.002 52.381 0.00 0.00 0.00 3.51
221 222 1.308998 CAGCCGAACACCAAAAGTCT 58.691 50.000 0.00 0.00 0.00 3.24
222 223 1.021968 ACAGCCGAACACCAAAAGTC 58.978 50.000 0.00 0.00 0.00 3.01
223 224 0.738389 CACAGCCGAACACCAAAAGT 59.262 50.000 0.00 0.00 0.00 2.66
224 225 0.738389 ACACAGCCGAACACCAAAAG 59.262 50.000 0.00 0.00 0.00 2.27
225 226 0.453793 CACACAGCCGAACACCAAAA 59.546 50.000 0.00 0.00 0.00 2.44
226 227 1.999071 GCACACAGCCGAACACCAAA 61.999 55.000 0.00 0.00 37.23 3.28
227 228 2.477176 GCACACAGCCGAACACCAA 61.477 57.895 0.00 0.00 37.23 3.67
228 229 2.899838 GCACACAGCCGAACACCA 60.900 61.111 0.00 0.00 37.23 4.17
229 230 2.187599 GATGCACACAGCCGAACACC 62.188 60.000 0.00 0.00 44.83 4.16
230 231 1.207593 GATGCACACAGCCGAACAC 59.792 57.895 0.00 0.00 44.83 3.32
231 232 1.965930 GGATGCACACAGCCGAACA 60.966 57.895 0.00 0.00 43.70 3.18
232 233 2.870372 GGATGCACACAGCCGAAC 59.130 61.111 0.00 0.00 43.70 3.95
245 246 3.005554 CGGCCTCTGCATAATTAGGATG 58.994 50.000 0.00 0.00 40.13 3.51
246 247 2.026822 CCGGCCTCTGCATAATTAGGAT 60.027 50.000 0.00 0.00 40.13 3.24
247 248 1.347707 CCGGCCTCTGCATAATTAGGA 59.652 52.381 0.00 0.00 40.13 2.94
248 249 1.611673 CCCGGCCTCTGCATAATTAGG 60.612 57.143 0.00 0.00 40.13 2.69
249 250 1.072331 ACCCGGCCTCTGCATAATTAG 59.928 52.381 0.00 0.00 40.13 1.73
250 251 1.136828 ACCCGGCCTCTGCATAATTA 58.863 50.000 0.00 0.00 40.13 1.40
251 252 0.466189 CACCCGGCCTCTGCATAATT 60.466 55.000 0.00 0.00 40.13 1.40
252 253 1.149174 CACCCGGCCTCTGCATAAT 59.851 57.895 0.00 0.00 40.13 1.28
253 254 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
254 255 2.297895 AACACCCGGCCTCTGCATA 61.298 57.895 0.00 0.00 40.13 3.14
255 256 3.650950 AACACCCGGCCTCTGCAT 61.651 61.111 0.00 0.00 40.13 3.96
256 257 4.641645 CAACACCCGGCCTCTGCA 62.642 66.667 0.00 0.00 40.13 4.41
258 259 4.335647 AGCAACACCCGGCCTCTG 62.336 66.667 0.00 0.00 0.00 3.35
259 260 4.021925 GAGCAACACCCGGCCTCT 62.022 66.667 0.00 0.00 0.00 3.69
260 261 2.252072 TATGAGCAACACCCGGCCTC 62.252 60.000 0.00 0.00 0.00 4.70
261 262 1.847798 TTATGAGCAACACCCGGCCT 61.848 55.000 0.00 0.00 0.00 5.19
262 263 0.751643 ATTATGAGCAACACCCGGCC 60.752 55.000 0.00 0.00 0.00 6.13
263 264 0.381801 CATTATGAGCAACACCCGGC 59.618 55.000 0.00 0.00 0.00 6.13
264 265 0.381801 GCATTATGAGCAACACCCGG 59.618 55.000 0.00 0.00 0.00 5.73
265 266 1.382522 AGCATTATGAGCAACACCCG 58.617 50.000 0.00 0.00 0.00 5.28
266 267 3.056607 ACAAAGCATTATGAGCAACACCC 60.057 43.478 0.00 0.00 0.00 4.61
267 268 4.178545 ACAAAGCATTATGAGCAACACC 57.821 40.909 0.00 0.00 0.00 4.16
268 269 5.973565 GGATACAAAGCATTATGAGCAACAC 59.026 40.000 0.00 0.00 0.00 3.32
269 270 6.135290 GGATACAAAGCATTATGAGCAACA 57.865 37.500 0.00 0.00 0.00 3.33
287 288 6.318648 TCAAAAATGTAGCATCAGGTGGATAC 59.681 38.462 0.00 0.00 33.95 2.24
288 289 6.422333 TCAAAAATGTAGCATCAGGTGGATA 58.578 36.000 0.00 0.00 33.95 2.59
289 290 5.263599 TCAAAAATGTAGCATCAGGTGGAT 58.736 37.500 0.00 0.00 36.39 3.41
290 291 4.661222 TCAAAAATGTAGCATCAGGTGGA 58.339 39.130 0.00 0.00 0.00 4.02
291 292 4.460382 ACTCAAAAATGTAGCATCAGGTGG 59.540 41.667 0.00 0.00 0.00 4.61
292 293 5.633830 ACTCAAAAATGTAGCATCAGGTG 57.366 39.130 0.00 0.00 0.00 4.00
293 294 7.759489 TTAACTCAAAAATGTAGCATCAGGT 57.241 32.000 0.00 0.00 0.00 4.00
302 303 9.575783 GGGCGATTTTATTAACTCAAAAATGTA 57.424 29.630 0.00 0.00 33.99 2.29
303 304 8.311109 AGGGCGATTTTATTAACTCAAAAATGT 58.689 29.630 0.00 0.00 33.99 2.71
304 305 8.702163 AGGGCGATTTTATTAACTCAAAAATG 57.298 30.769 0.00 0.00 33.99 2.32
305 306 9.719355 AAAGGGCGATTTTATTAACTCAAAAAT 57.281 25.926 0.00 0.00 35.95 1.82
309 310 8.339714 CGATAAAGGGCGATTTTATTAACTCAA 58.660 33.333 0.00 0.00 32.42 3.02
310 311 7.041644 CCGATAAAGGGCGATTTTATTAACTCA 60.042 37.037 0.00 0.00 32.42 3.41
311 312 7.172019 TCCGATAAAGGGCGATTTTATTAACTC 59.828 37.037 0.00 0.00 32.42 3.01
312 313 6.993902 TCCGATAAAGGGCGATTTTATTAACT 59.006 34.615 0.00 0.00 32.42 2.24
313 314 7.193377 TCCGATAAAGGGCGATTTTATTAAC 57.807 36.000 0.00 0.00 32.42 2.01
314 315 7.804843 TTCCGATAAAGGGCGATTTTATTAA 57.195 32.000 0.00 0.00 32.42 1.40
315 316 7.804843 TTTCCGATAAAGGGCGATTTTATTA 57.195 32.000 0.00 0.00 32.42 0.98
316 317 6.702716 TTTCCGATAAAGGGCGATTTTATT 57.297 33.333 0.00 0.00 32.42 1.40
317 318 6.702716 TTTTCCGATAAAGGGCGATTTTAT 57.297 33.333 0.00 0.00 34.36 1.40
318 319 6.512342 TTTTTCCGATAAAGGGCGATTTTA 57.488 33.333 0.00 0.00 0.00 1.52
319 320 5.394224 TTTTTCCGATAAAGGGCGATTTT 57.606 34.783 0.00 0.00 0.00 1.82
339 340 9.328845 ACACATTTCAATACAAGATTGCTTTTT 57.671 25.926 0.00 0.00 30.14 1.94
340 341 8.767085 CACACATTTCAATACAAGATTGCTTTT 58.233 29.630 0.00 0.00 30.14 2.27
341 342 8.143193 TCACACATTTCAATACAAGATTGCTTT 58.857 29.630 0.00 0.00 30.14 3.51
342 343 7.660112 TCACACATTTCAATACAAGATTGCTT 58.340 30.769 0.00 0.00 33.74 3.91
343 344 7.218228 TCACACATTTCAATACAAGATTGCT 57.782 32.000 0.00 0.00 0.00 3.91
344 345 7.543172 ACATCACACATTTCAATACAAGATTGC 59.457 33.333 0.00 0.00 0.00 3.56
345 346 8.975410 ACATCACACATTTCAATACAAGATTG 57.025 30.769 0.00 0.00 0.00 2.67
348 349 9.283768 AGTAACATCACACATTTCAATACAAGA 57.716 29.630 0.00 0.00 0.00 3.02
351 352 9.719355 ACTAGTAACATCACACATTTCAATACA 57.281 29.630 0.00 0.00 0.00 2.29
353 354 9.936759 TGACTAGTAACATCACACATTTCAATA 57.063 29.630 0.00 0.00 0.00 1.90
354 355 8.846943 TGACTAGTAACATCACACATTTCAAT 57.153 30.769 0.00 0.00 0.00 2.57
355 356 8.669946 TTGACTAGTAACATCACACATTTCAA 57.330 30.769 0.00 0.00 0.00 2.69
356 357 7.931407 ACTTGACTAGTAACATCACACATTTCA 59.069 33.333 0.00 0.00 34.56 2.69
357 358 8.311650 ACTTGACTAGTAACATCACACATTTC 57.688 34.615 0.00 0.00 34.56 2.17
358 359 8.677148 AACTTGACTAGTAACATCACACATTT 57.323 30.769 0.00 0.00 35.54 2.32
359 360 9.204570 GTAACTTGACTAGTAACATCACACATT 57.795 33.333 0.00 0.00 35.54 2.71
360 361 8.585881 AGTAACTTGACTAGTAACATCACACAT 58.414 33.333 0.00 0.00 35.54 3.21
361 362 7.948357 AGTAACTTGACTAGTAACATCACACA 58.052 34.615 0.00 0.00 35.54 3.72
362 363 7.541437 GGAGTAACTTGACTAGTAACATCACAC 59.459 40.741 0.00 0.00 35.54 3.82
363 364 7.309621 GGGAGTAACTTGACTAGTAACATCACA 60.310 40.741 0.00 0.00 35.54 3.58
364 365 7.034397 GGGAGTAACTTGACTAGTAACATCAC 58.966 42.308 0.00 0.00 35.54 3.06
365 366 6.722590 TGGGAGTAACTTGACTAGTAACATCA 59.277 38.462 0.00 0.00 35.54 3.07
366 367 7.166691 TGGGAGTAACTTGACTAGTAACATC 57.833 40.000 0.00 0.00 35.54 3.06
367 368 7.735326 ATGGGAGTAACTTGACTAGTAACAT 57.265 36.000 0.00 0.00 35.54 2.71
368 369 7.015877 ACAATGGGAGTAACTTGACTAGTAACA 59.984 37.037 0.00 0.00 35.54 2.41
369 370 7.331193 CACAATGGGAGTAACTTGACTAGTAAC 59.669 40.741 0.00 0.00 35.54 2.50
370 371 7.233962 TCACAATGGGAGTAACTTGACTAGTAA 59.766 37.037 0.00 0.00 35.54 2.24
371 372 6.722590 TCACAATGGGAGTAACTTGACTAGTA 59.277 38.462 0.00 0.00 35.54 1.82
372 373 5.542635 TCACAATGGGAGTAACTTGACTAGT 59.457 40.000 0.00 0.00 39.32 2.57
373 374 5.869888 GTCACAATGGGAGTAACTTGACTAG 59.130 44.000 0.00 0.00 31.43 2.57
374 375 5.542635 AGTCACAATGGGAGTAACTTGACTA 59.457 40.000 0.00 0.00 40.43 2.59
375 376 4.348168 AGTCACAATGGGAGTAACTTGACT 59.652 41.667 0.00 0.00 38.07 3.41
376 377 4.642429 AGTCACAATGGGAGTAACTTGAC 58.358 43.478 0.00 0.00 33.76 3.18
377 378 4.974645 AGTCACAATGGGAGTAACTTGA 57.025 40.909 0.00 0.00 0.00 3.02
378 379 5.794894 ACTAGTCACAATGGGAGTAACTTG 58.205 41.667 1.34 0.00 0.00 3.16
379 380 5.780793 AGACTAGTCACAATGGGAGTAACTT 59.219 40.000 24.44 0.00 0.00 2.66
380 381 5.334421 AGACTAGTCACAATGGGAGTAACT 58.666 41.667 24.44 1.97 0.00 2.24
381 382 5.662674 AGACTAGTCACAATGGGAGTAAC 57.337 43.478 24.44 0.00 0.00 2.50
382 383 6.722590 TGTTAGACTAGTCACAATGGGAGTAA 59.277 38.462 24.44 7.58 0.00 2.24
383 384 6.250711 TGTTAGACTAGTCACAATGGGAGTA 58.749 40.000 24.44 0.00 0.00 2.59
384 385 5.084519 TGTTAGACTAGTCACAATGGGAGT 58.915 41.667 24.44 0.00 0.00 3.85
385 386 5.661056 TGTTAGACTAGTCACAATGGGAG 57.339 43.478 24.44 0.00 0.00 4.30
386 387 5.719563 TGATGTTAGACTAGTCACAATGGGA 59.280 40.000 24.44 0.00 0.00 4.37
387 388 5.812642 GTGATGTTAGACTAGTCACAATGGG 59.187 44.000 24.44 0.00 39.10 4.00
388 389 6.398095 TGTGATGTTAGACTAGTCACAATGG 58.602 40.000 24.44 0.00 44.19 3.16
392 393 6.590234 ATGTGTGATGTTAGACTAGTCACA 57.410 37.500 24.44 19.85 44.74 3.58
393 394 8.406297 TGATATGTGTGATGTTAGACTAGTCAC 58.594 37.037 24.44 14.98 39.58 3.67
394 395 8.519799 TGATATGTGTGATGTTAGACTAGTCA 57.480 34.615 24.44 8.16 0.00 3.41
395 396 9.457110 CTTGATATGTGTGATGTTAGACTAGTC 57.543 37.037 15.41 15.41 0.00 2.59
396 397 8.417106 CCTTGATATGTGTGATGTTAGACTAGT 58.583 37.037 0.00 0.00 0.00 2.57
397 398 7.383572 GCCTTGATATGTGTGATGTTAGACTAG 59.616 40.741 0.00 0.00 0.00 2.57
398 399 7.147742 TGCCTTGATATGTGTGATGTTAGACTA 60.148 37.037 0.00 0.00 0.00 2.59
399 400 6.051717 GCCTTGATATGTGTGATGTTAGACT 58.948 40.000 0.00 0.00 0.00 3.24
400 401 5.817296 TGCCTTGATATGTGTGATGTTAGAC 59.183 40.000 0.00 0.00 0.00 2.59
401 402 5.988287 TGCCTTGATATGTGTGATGTTAGA 58.012 37.500 0.00 0.00 0.00 2.10
402 403 6.539826 TCTTGCCTTGATATGTGTGATGTTAG 59.460 38.462 0.00 0.00 0.00 2.34
403 404 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
404 405 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
405 406 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
406 407 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
407 408 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
408 409 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
409 410 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
410 411 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
411 412 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
412 413 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
413 414 7.492020 GCTATAGACTCATCTTGCCTTGATATG 59.508 40.741 3.21 0.00 36.29 1.78
414 415 7.179872 TGCTATAGACTCATCTTGCCTTGATAT 59.820 37.037 3.21 0.00 36.29 1.63
415 416 6.494835 TGCTATAGACTCATCTTGCCTTGATA 59.505 38.462 3.21 0.00 36.29 2.15
416 417 5.306419 TGCTATAGACTCATCTTGCCTTGAT 59.694 40.000 3.21 0.00 36.29 2.57
417 418 4.651045 TGCTATAGACTCATCTTGCCTTGA 59.349 41.667 3.21 0.00 36.29 3.02
418 419 4.953667 TGCTATAGACTCATCTTGCCTTG 58.046 43.478 3.21 0.00 36.29 3.61
419 420 5.822132 ATGCTATAGACTCATCTTGCCTT 57.178 39.130 3.21 0.00 36.29 4.35
420 421 6.924913 TTATGCTATAGACTCATCTTGCCT 57.075 37.500 3.21 0.00 36.29 4.75
421 422 9.658799 TTTATTATGCTATAGACTCATCTTGCC 57.341 33.333 3.21 0.00 36.29 4.52
461 462 6.932960 GTGGGGAGTAATATATGTGTGGTAAC 59.067 42.308 0.00 0.00 0.00 2.50
462 463 6.847567 AGTGGGGAGTAATATATGTGTGGTAA 59.152 38.462 0.00 0.00 0.00 2.85
463 464 6.387127 AGTGGGGAGTAATATATGTGTGGTA 58.613 40.000 0.00 0.00 0.00 3.25
464 465 5.224441 AGTGGGGAGTAATATATGTGTGGT 58.776 41.667 0.00 0.00 0.00 4.16
465 466 5.825593 AGTGGGGAGTAATATATGTGTGG 57.174 43.478 0.00 0.00 0.00 4.17
474 475 9.956558 TTACTTCCTTTATAGTGGGGAGTAATA 57.043 33.333 13.23 0.32 32.74 0.98
475 476 8.712103 GTTACTTCCTTTATAGTGGGGAGTAAT 58.288 37.037 17.20 0.00 36.19 1.89
476 477 7.679453 TGTTACTTCCTTTATAGTGGGGAGTAA 59.321 37.037 13.23 13.23 33.93 2.24
477 478 7.191210 TGTTACTTCCTTTATAGTGGGGAGTA 58.809 38.462 0.00 0.00 0.00 2.59
478 479 6.027482 TGTTACTTCCTTTATAGTGGGGAGT 58.973 40.000 0.00 0.00 0.00 3.85
479 480 6.555463 TGTTACTTCCTTTATAGTGGGGAG 57.445 41.667 0.00 0.00 0.00 4.30
480 481 7.847848 ACTATGTTACTTCCTTTATAGTGGGGA 59.152 37.037 0.00 0.00 32.03 4.81
481 482 7.931948 CACTATGTTACTTCCTTTATAGTGGGG 59.068 40.741 12.14 0.00 41.72 4.96
482 483 8.483758 ACACTATGTTACTTCCTTTATAGTGGG 58.516 37.037 19.99 3.73 46.00 4.61
483 484 9.886132 AACACTATGTTACTTCCTTTATAGTGG 57.114 33.333 19.99 7.91 46.00 4.00
498 499 9.850628 GTCACAATGAGTAGTAACACTATGTTA 57.149 33.333 0.00 0.00 41.45 2.41
499 500 8.585881 AGTCACAATGAGTAGTAACACTATGTT 58.414 33.333 0.00 0.00 43.88 2.71
500 501 8.123639 AGTCACAATGAGTAGTAACACTATGT 57.876 34.615 0.00 0.00 32.65 2.29
501 502 9.723447 CTAGTCACAATGAGTAGTAACACTATG 57.277 37.037 11.12 0.00 42.58 2.23
512 513 9.175312 CCTAACTTAGACTAGTCACAATGAGTA 57.825 37.037 24.44 3.05 31.49 2.59
513 514 7.889073 TCCTAACTTAGACTAGTCACAATGAGT 59.111 37.037 24.44 12.57 33.94 3.41
514 515 8.282455 TCCTAACTTAGACTAGTCACAATGAG 57.718 38.462 24.44 11.97 0.00 2.90
515 516 8.824756 ATCCTAACTTAGACTAGTCACAATGA 57.175 34.615 24.44 10.38 0.00 2.57
518 519 9.186837 CCTTATCCTAACTTAGACTAGTCACAA 57.813 37.037 24.44 15.86 0.00 3.33
519 520 8.334734 ACCTTATCCTAACTTAGACTAGTCACA 58.665 37.037 24.44 9.25 0.00 3.58
520 521 8.623030 CACCTTATCCTAACTTAGACTAGTCAC 58.377 40.741 24.44 0.00 0.00 3.67
521 522 7.778853 CCACCTTATCCTAACTTAGACTAGTCA 59.221 40.741 24.44 8.16 0.00 3.41
522 523 7.231115 CCCACCTTATCCTAACTTAGACTAGTC 59.769 44.444 15.41 15.41 0.00 2.59
523 524 7.068061 CCCACCTTATCCTAACTTAGACTAGT 58.932 42.308 0.00 0.00 0.00 2.57
524 525 7.296098 TCCCACCTTATCCTAACTTAGACTAG 58.704 42.308 0.00 0.00 0.00 2.57
525 526 7.229951 TCCCACCTTATCCTAACTTAGACTA 57.770 40.000 0.00 0.00 0.00 2.59
526 527 6.101274 TCCCACCTTATCCTAACTTAGACT 57.899 41.667 0.00 0.00 0.00 3.24
527 528 6.610425 TCTTCCCACCTTATCCTAACTTAGAC 59.390 42.308 0.00 0.00 0.00 2.59
528 529 6.748969 TCTTCCCACCTTATCCTAACTTAGA 58.251 40.000 0.00 0.00 0.00 2.10
529 530 7.344871 TCTTCTTCCCACCTTATCCTAACTTAG 59.655 40.741 0.00 0.00 0.00 2.18
530 531 7.194050 TCTTCTTCCCACCTTATCCTAACTTA 58.806 38.462 0.00 0.00 0.00 2.24
545 546 2.592993 CCCACCGCTCTTCTTCCCA 61.593 63.158 0.00 0.00 0.00 4.37
546 547 2.269241 CCCACCGCTCTTCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
549 550 1.302832 CTTGCCCACCGCTCTTCTT 60.303 57.895 0.00 0.00 38.78 2.52
572 579 4.088762 CGTGACACATGCACCCGC 62.089 66.667 6.37 0.00 39.24 6.13
581 588 1.887242 GCCTCTGTTGCGTGACACA 60.887 57.895 6.37 0.00 0.00 3.72
810 843 5.068234 TGGACCGTAGAACAATACTTCTG 57.932 43.478 0.00 0.00 32.54 3.02
816 849 4.223255 TGAACCATGGACCGTAGAACAATA 59.777 41.667 21.47 0.00 0.00 1.90
847 880 7.450124 AGAATTGACTTGACTTCGTCTACTA 57.550 36.000 0.00 0.00 33.15 1.82
1170 1204 2.978156 AGGTTTTCCAGATGAAGGCA 57.022 45.000 0.00 0.00 43.73 4.75
1632 1681 0.535780 CCTTCCACAGCTGCTGAACA 60.536 55.000 34.28 14.79 35.18 3.18
1635 1684 1.123861 AGTCCTTCCACAGCTGCTGA 61.124 55.000 34.28 11.12 35.18 4.26
1680 1729 2.370849 AGGACCCATCAACTTAACGTGT 59.629 45.455 0.00 0.00 0.00 4.49
1685 1734 3.558321 CCGTGAAGGACCCATCAACTTAA 60.558 47.826 0.00 0.00 45.00 1.85
1708 1757 3.961182 AGTAGTGCGTTATACCATCACG 58.039 45.455 0.00 0.00 36.98 4.35
1716 1765 7.696755 TGTCTTATTCGAAGTAGTGCGTTATA 58.303 34.615 3.35 0.00 0.00 0.98
1793 1842 2.649331 TTCACTACAGAGCGTAAGGC 57.351 50.000 0.00 0.00 44.05 4.35
1845 1894 7.450903 AGGCTAGTAACATGTAACTCAAAGTT 58.549 34.615 0.00 0.00 41.97 2.66
1868 1917 2.782192 CTCACGTATCGCGAACTTAAGG 59.218 50.000 15.24 4.98 44.77 2.69
1877 1929 2.576053 ACGCACTCACGTATCGCG 60.576 61.111 16.18 16.18 46.19 5.87
1977 2029 9.315914 ACTTTCCAAGTCCAAACAACCTTTTGT 62.316 37.037 0.00 0.00 42.29 2.83
1978 2030 4.464069 TCCAAGTCCAAACAACCTTTTG 57.536 40.909 0.00 0.00 38.83 2.44
1979 2031 5.012664 ACTTTCCAAGTCCAAACAACCTTTT 59.987 36.000 0.00 0.00 37.02 2.27
1980 2032 4.530553 ACTTTCCAAGTCCAAACAACCTTT 59.469 37.500 0.00 0.00 37.02 3.11
1981 2033 4.093743 ACTTTCCAAGTCCAAACAACCTT 58.906 39.130 0.00 0.00 37.02 3.50
1982 2034 3.708451 ACTTTCCAAGTCCAAACAACCT 58.292 40.909 0.00 0.00 37.02 3.50
2004 2056 1.044725 CGTGCGCAAACAGCTTTAAG 58.955 50.000 14.00 0.00 42.61 1.85
2023 2075 0.034186 TCCACCCATCCAAGCATGTC 60.034 55.000 0.00 0.00 0.00 3.06
2089 2141 4.172505 CTGCATGTCTTCACTGTCTAGTC 58.827 47.826 0.00 0.00 34.07 2.59
2121 2173 2.443255 AGAGTTGATCCAGTTTGTGGGT 59.557 45.455 0.00 0.00 45.49 4.51
2215 2270 7.117667 GGGCTACATTCAACAAAACCTAATTTG 59.882 37.037 0.00 0.00 44.11 2.32
2251 2308 7.405469 TTGGAATCAAATTCATCACAAAACG 57.595 32.000 2.42 0.00 41.03 3.60
2312 2369 2.964464 ACTTGCCATCAATCAAACACCA 59.036 40.909 0.00 0.00 0.00 4.17
2339 2396 0.393537 CATCGCCCTCTTCCAGCTTT 60.394 55.000 0.00 0.00 0.00 3.51
2401 2458 4.442893 CGAAAACCAGGTGCATATCTCCTA 60.443 45.833 0.00 0.00 36.59 2.94
2428 2485 2.164422 AGTGCATCACGAGAGATTTCGA 59.836 45.455 2.12 0.00 43.03 3.71
2460 2517 0.368907 CCGTTATCACTTCCAACGCG 59.631 55.000 3.53 3.53 42.70 6.01
2474 2531 0.179111 CTGCTTCCGCTCATCCGTTA 60.179 55.000 0.00 0.00 36.97 3.18
2475 2532 1.448540 CTGCTTCCGCTCATCCGTT 60.449 57.895 0.00 0.00 36.97 4.44
2478 2535 1.134670 AGTAACTGCTTCCGCTCATCC 60.135 52.381 0.00 0.00 36.97 3.51
2481 2538 2.080286 GAAGTAACTGCTTCCGCTCA 57.920 50.000 0.00 0.00 39.03 4.26
2490 2547 3.440522 CCTTGCCTTTAGGAAGTAACTGC 59.559 47.826 0.00 0.00 37.39 4.40
2495 2552 2.574824 GTCCCCTTGCCTTTAGGAAGTA 59.425 50.000 0.00 0.00 37.39 2.24
2513 2570 4.195416 GAGAATCTCAATTGGGACTGTCC 58.805 47.826 18.65 18.65 35.23 4.02
2515 2572 3.848975 AGGAGAATCTCAATTGGGACTGT 59.151 43.478 10.99 0.00 33.73 3.55
2517 2574 3.848975 ACAGGAGAATCTCAATTGGGACT 59.151 43.478 10.99 0.00 33.73 3.85
2527 2584 2.295885 CATTGCCCACAGGAGAATCTC 58.704 52.381 0.71 0.71 33.47 2.75
2536 2593 2.050350 CCTCTGCCATTGCCCACAG 61.050 63.158 0.00 0.00 36.33 3.66
2559 2616 2.219458 TGTCGACGATATGGAGACTCC 58.781 52.381 15.13 15.13 36.96 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.