Multiple sequence alignment - TraesCS1D01G173800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G173800 chr1D 100.000 2801 0 0 1 2801 247331885 247329085 0.000000e+00 5173.0
1 TraesCS1D01G173800 chr1B 91.214 1787 87 30 538 2282 330388115 330389873 0.000000e+00 2366.0
2 TraesCS1D01G173800 chr1B 93.007 143 10 0 2313 2455 330389867 330390009 2.830000e-50 209.0
3 TraesCS1D01G173800 chr1B 95.238 42 2 0 1618 1659 615942172 615942213 1.800000e-07 67.6
4 TraesCS1D01G173800 chr1A 95.425 918 33 3 1181 2092 300004124 300005038 0.000000e+00 1454.0
5 TraesCS1D01G173800 chr1A 96.044 632 22 2 538 1168 300003522 300004151 0.000000e+00 1026.0
6 TraesCS1D01G173800 chr1A 86.567 134 12 4 2154 2282 300005330 300005462 2.910000e-30 143.0
7 TraesCS1D01G173800 chr5D 91.344 543 35 8 1 532 4566072 4566613 0.000000e+00 732.0
8 TraesCS1D01G173800 chr5D 91.497 541 33 10 1 530 4722557 4723095 0.000000e+00 732.0
9 TraesCS1D01G173800 chr5D 91.344 543 34 9 1 532 4487354 4487894 0.000000e+00 730.0
10 TraesCS1D01G173800 chr5D 90.993 544 37 8 1 533 4368270 4368812 0.000000e+00 723.0
11 TraesCS1D01G173800 chr5D 92.516 481 35 1 1 481 4419074 4419553 0.000000e+00 688.0
12 TraesCS1D01G173800 chrUn 91.160 543 36 8 1 532 252761664 252762205 0.000000e+00 726.0
13 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 45094645 45094681 5.010000e-08 69.4
14 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 171044932 171044968 5.010000e-08 69.4
15 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 231484471 231484435 5.010000e-08 69.4
16 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 244848631 244848667 5.010000e-08 69.4
17 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 336782827 336782863 5.010000e-08 69.4
18 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 405916429 405916465 5.010000e-08 69.4
19 TraesCS1D01G173800 chrUn 100.000 37 0 0 2277 2313 415712055 415712019 5.010000e-08 69.4
20 TraesCS1D01G173800 chr7B 90.625 544 38 4 1 532 175997742 175997200 0.000000e+00 710.0
21 TraesCS1D01G173800 chr4D 90.494 547 39 8 1 536 391723625 391724169 0.000000e+00 710.0
22 TraesCS1D01G173800 chr4D 90.747 281 18 3 2529 2801 109373651 109373371 4.410000e-98 368.0
23 TraesCS1D01G173800 chr4D 88.929 280 24 2 2529 2801 220605737 220605458 3.460000e-89 339.0
24 TraesCS1D01G173800 chr3B 90.608 543 39 3 1 531 732887408 732886866 0.000000e+00 710.0
25 TraesCS1D01G173800 chr3B 90.476 42 4 0 1618 1659 115243973 115244014 3.900000e-04 56.5
26 TraesCS1D01G173800 chr3D 88.971 544 34 8 1 531 282472016 282471486 0.000000e+00 649.0
27 TraesCS1D01G173800 chr3D 90.714 280 19 2 2529 2801 71245784 71246063 1.590000e-97 366.0
28 TraesCS1D01G173800 chr7D 89.716 282 21 3 2526 2800 312648583 312648863 1.230000e-93 353.0
29 TraesCS1D01G173800 chr7D 89.324 281 22 3 2528 2801 586357277 586356998 2.070000e-91 346.0
30 TraesCS1D01G173800 chr7D 85.149 101 7 5 2165 2263 64978724 64978818 2.300000e-16 97.1
31 TraesCS1D01G173800 chr2D 90.775 271 14 6 2534 2796 440183425 440183158 4.440000e-93 351.0
32 TraesCS1D01G173800 chr2D 89.286 280 21 3 2529 2801 138002635 138002912 2.670000e-90 342.0
33 TraesCS1D01G173800 chr2D 82.443 131 13 9 2157 2283 647739054 647738930 3.820000e-19 106.0
34 TraesCS1D01G173800 chr7A 89.643 280 20 3 2529 2801 118999210 118998933 5.740000e-92 348.0
35 TraesCS1D01G173800 chr2B 89.781 274 20 3 2529 2795 532560965 532560693 7.430000e-91 344.0
36 TraesCS1D01G173800 chr5A 97.619 42 0 1 2277 2318 415188798 415188758 1.390000e-08 71.3
37 TraesCS1D01G173800 chr2A 93.617 47 3 0 487 533 603735259 603735213 1.390000e-08 71.3
38 TraesCS1D01G173800 chr6D 100.000 37 0 0 2277 2313 283207392 283207428 5.010000e-08 69.4
39 TraesCS1D01G173800 chr5B 100.000 34 0 0 2058 2091 537527157 537527190 2.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G173800 chr1D 247329085 247331885 2800 True 5173.000000 5173 100.000000 1 2801 1 chr1D.!!$R1 2800
1 TraesCS1D01G173800 chr1B 330388115 330390009 1894 False 1287.500000 2366 92.110500 538 2455 2 chr1B.!!$F2 1917
2 TraesCS1D01G173800 chr1A 300003522 300005462 1940 False 874.333333 1454 92.678667 538 2282 3 chr1A.!!$F1 1744
3 TraesCS1D01G173800 chr5D 4566072 4566613 541 False 732.000000 732 91.344000 1 532 1 chr5D.!!$F4 531
4 TraesCS1D01G173800 chr5D 4722557 4723095 538 False 732.000000 732 91.497000 1 530 1 chr5D.!!$F5 529
5 TraesCS1D01G173800 chr5D 4487354 4487894 540 False 730.000000 730 91.344000 1 532 1 chr5D.!!$F3 531
6 TraesCS1D01G173800 chr5D 4368270 4368812 542 False 723.000000 723 90.993000 1 533 1 chr5D.!!$F1 532
7 TraesCS1D01G173800 chrUn 252761664 252762205 541 False 726.000000 726 91.160000 1 532 1 chrUn.!!$F4 531
8 TraesCS1D01G173800 chr7B 175997200 175997742 542 True 710.000000 710 90.625000 1 532 1 chr7B.!!$R1 531
9 TraesCS1D01G173800 chr4D 391723625 391724169 544 False 710.000000 710 90.494000 1 536 1 chr4D.!!$F1 535
10 TraesCS1D01G173800 chr3B 732886866 732887408 542 True 710.000000 710 90.608000 1 531 1 chr3B.!!$R1 530
11 TraesCS1D01G173800 chr3D 282471486 282472016 530 True 649.000000 649 88.971000 1 531 1 chr3D.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 482 0.88649 AAAAGTCACTCTGCGGCCAG 60.886 55.0 2.24 0.0 40.54 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2018 0.529337 CATGCACGGAGCTACTGGAG 60.529 60.0 0.0 0.0 45.94 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.808891 CGAGTGGTTTGGTTCGGTCTT 60.809 52.381 0.00 0.00 0.00 3.01
81 82 5.885912 ACATGACCAAACTTGTGTACTCTTT 59.114 36.000 0.00 0.00 0.00 2.52
171 172 1.989165 GTCTGAAGTAACTCTGCAGCG 59.011 52.381 9.47 5.22 46.69 5.18
224 225 3.148026 TGCATACGACGTCGGATTAAA 57.852 42.857 37.89 21.37 40.60 1.52
226 227 4.114073 TGCATACGACGTCGGATTAAAAT 58.886 39.130 37.89 19.24 40.60 1.82
284 285 8.237267 AGACGAAGATTTTTCATGTTGATAACC 58.763 33.333 0.00 0.00 0.00 2.85
297 298 8.859090 TCATGTTGATAACCTTTTCATTTGAGT 58.141 29.630 0.00 0.00 0.00 3.41
302 303 9.527157 TTGATAACCTTTTCATTTGAGTCCATA 57.473 29.630 0.00 0.00 0.00 2.74
367 369 0.951040 CGAAAAGTGCTCTTCGGCCT 60.951 55.000 0.00 0.00 40.52 5.19
407 411 4.631773 GGTAGGCCGAAAAGTCCC 57.368 61.111 0.00 0.00 0.00 4.46
441 475 2.338500 GTAGGCCGAAAAGTCACTCTG 58.662 52.381 0.00 0.00 0.00 3.35
448 482 0.886490 AAAAGTCACTCTGCGGCCAG 60.886 55.000 2.24 0.00 40.54 4.85
779 826 2.154074 AACCGCCTTTCCACCTCCT 61.154 57.895 0.00 0.00 0.00 3.69
1066 1114 3.224324 GGCATCCTAGGCCGACGA 61.224 66.667 2.96 0.00 42.39 4.20
1194 1242 4.082523 GTAGCCGCACCTCTGCCA 62.083 66.667 0.00 0.00 40.73 4.92
1483 1531 2.434359 GCCTGAGCGTGTGGTACC 60.434 66.667 4.43 4.43 0.00 3.34
1497 1545 3.632080 TACCACACCCACCGGCTG 61.632 66.667 0.00 0.00 0.00 4.85
1533 1581 4.176752 GCCTTCTACCAGGGCCGG 62.177 72.222 12.04 12.04 39.96 6.13
1769 1817 2.573369 CAGCCAGATCAAGATCAAGGG 58.427 52.381 17.59 13.73 40.22 3.95
1958 2013 3.946201 CTCCCGCCCCCTAGCATG 61.946 72.222 0.00 0.00 0.00 4.06
1963 2018 1.227674 CGCCCCCTAGCATGTCTTC 60.228 63.158 0.00 0.00 0.00 2.87
1997 2052 3.926527 CGTGCATGTACATCTTGTGTAGT 59.073 43.478 14.55 0.00 43.70 2.73
1998 2053 5.099575 CGTGCATGTACATCTTGTGTAGTA 58.900 41.667 14.55 0.00 43.70 1.82
1999 2054 5.230097 CGTGCATGTACATCTTGTGTAGTAG 59.770 44.000 14.55 0.00 43.70 2.57
2180 2471 3.829886 TTCAGCACGAAATGACATTCC 57.170 42.857 0.05 0.00 0.00 3.01
2190 2481 4.142816 CGAAATGACATTCCTGGAAGTCAC 60.143 45.833 28.15 20.07 43.01 3.67
2245 2540 9.883142 ATGTTTTCAAACTAGAATTTTTGGACA 57.117 25.926 0.00 4.28 39.59 4.02
2249 2544 7.873719 TCAAACTAGAATTTTTGGACAGTCA 57.126 32.000 2.17 0.00 34.14 3.41
2259 2554 9.489393 GAATTTTTGGACAGTCAATTTTGTTTC 57.511 29.630 2.17 0.00 0.00 2.78
2276 2571 7.561237 TTTGTTTCTTTTTCACGACTTTCAG 57.439 32.000 0.00 0.00 0.00 3.02
2277 2572 6.489127 TGTTTCTTTTTCACGACTTTCAGA 57.511 33.333 0.00 0.00 0.00 3.27
2278 2573 6.904498 TGTTTCTTTTTCACGACTTTCAGAA 58.096 32.000 0.00 0.00 0.00 3.02
2279 2574 7.021196 TGTTTCTTTTTCACGACTTTCAGAAG 58.979 34.615 0.00 0.00 38.87 2.85
2281 2576 6.737254 TCTTTTTCACGACTTTCAGAAGTT 57.263 33.333 0.00 0.00 45.88 2.66
2282 2577 7.141100 TCTTTTTCACGACTTTCAGAAGTTT 57.859 32.000 0.00 0.00 45.88 2.66
2283 2578 7.021196 TCTTTTTCACGACTTTCAGAAGTTTG 58.979 34.615 0.00 0.00 45.88 2.93
2284 2579 5.873179 TTTCACGACTTTCAGAAGTTTGT 57.127 34.783 0.00 0.00 45.88 2.83
2285 2580 4.857871 TCACGACTTTCAGAAGTTTGTG 57.142 40.909 14.30 14.30 45.88 3.33
2286 2581 4.250464 TCACGACTTTCAGAAGTTTGTGT 58.750 39.130 17.35 4.64 45.88 3.72
2287 2582 4.693566 TCACGACTTTCAGAAGTTTGTGTT 59.306 37.500 17.35 0.00 45.88 3.32
2288 2583 5.022021 CACGACTTTCAGAAGTTTGTGTTC 58.978 41.667 13.12 0.00 45.88 3.18
2289 2584 4.201685 ACGACTTTCAGAAGTTTGTGTTCG 60.202 41.667 0.00 0.00 45.88 3.95
2290 2585 4.016113 ACTTTCAGAAGTTTGTGTTCGC 57.984 40.909 0.00 0.00 43.48 4.70
2291 2586 3.438781 ACTTTCAGAAGTTTGTGTTCGCA 59.561 39.130 0.00 0.00 43.48 5.10
2292 2587 4.096382 ACTTTCAGAAGTTTGTGTTCGCAT 59.904 37.500 0.00 0.00 43.48 4.73
2293 2588 4.630894 TTCAGAAGTTTGTGTTCGCATT 57.369 36.364 0.00 0.00 0.00 3.56
2294 2589 4.630894 TCAGAAGTTTGTGTTCGCATTT 57.369 36.364 0.00 0.00 0.00 2.32
2295 2590 4.597079 TCAGAAGTTTGTGTTCGCATTTC 58.403 39.130 0.00 0.00 0.00 2.17
2296 2591 4.095632 TCAGAAGTTTGTGTTCGCATTTCA 59.904 37.500 0.00 0.00 0.00 2.69
2297 2592 4.977963 CAGAAGTTTGTGTTCGCATTTCAT 59.022 37.500 0.00 0.00 0.00 2.57
2298 2593 5.116074 CAGAAGTTTGTGTTCGCATTTCATC 59.884 40.000 0.00 0.00 0.00 2.92
2299 2594 4.566545 AGTTTGTGTTCGCATTTCATCA 57.433 36.364 0.00 0.00 0.00 3.07
2300 2595 4.930963 AGTTTGTGTTCGCATTTCATCAA 58.069 34.783 0.00 0.00 0.00 2.57
2301 2596 5.347342 AGTTTGTGTTCGCATTTCATCAAA 58.653 33.333 0.00 0.00 0.00 2.69
2302 2597 5.459762 AGTTTGTGTTCGCATTTCATCAAAG 59.540 36.000 0.00 0.00 0.00 2.77
2303 2598 3.899734 TGTGTTCGCATTTCATCAAAGG 58.100 40.909 0.00 0.00 0.00 3.11
2304 2599 3.567585 TGTGTTCGCATTTCATCAAAGGA 59.432 39.130 0.00 0.00 0.00 3.36
2305 2600 4.037327 TGTGTTCGCATTTCATCAAAGGAA 59.963 37.500 0.00 0.00 0.00 3.36
2306 2601 4.981674 GTGTTCGCATTTCATCAAAGGAAA 59.018 37.500 0.00 0.00 38.49 3.13
2307 2602 5.461737 GTGTTCGCATTTCATCAAAGGAAAA 59.538 36.000 0.00 0.00 37.74 2.29
2308 2603 5.691305 TGTTCGCATTTCATCAAAGGAAAAG 59.309 36.000 0.00 0.00 37.74 2.27
2309 2604 5.452078 TCGCATTTCATCAAAGGAAAAGT 57.548 34.783 0.00 0.00 37.74 2.66
2310 2605 5.221880 TCGCATTTCATCAAAGGAAAAGTG 58.778 37.500 0.00 0.00 37.74 3.16
2311 2606 4.386652 CGCATTTCATCAAAGGAAAAGTGG 59.613 41.667 0.00 0.00 37.74 4.00
2345 2640 4.823157 TGTGCTGAATTTTGCAAGCATAT 58.177 34.783 11.39 0.00 41.10 1.78
2346 2641 4.627900 TGTGCTGAATTTTGCAAGCATATG 59.372 37.500 11.39 0.00 41.10 1.78
2370 2665 9.715121 ATGAAGCATTTGTCAAAATTATCAAGT 57.285 25.926 1.31 0.00 33.59 3.16
2455 2750 3.027412 TGAGTTCAGGAGGAGCAGATAC 58.973 50.000 0.00 0.00 0.00 2.24
2456 2751 3.295973 GAGTTCAGGAGGAGCAGATACT 58.704 50.000 0.00 0.00 0.00 2.12
2457 2752 3.295973 AGTTCAGGAGGAGCAGATACTC 58.704 50.000 0.00 0.00 38.29 2.59
2458 2753 3.052944 AGTTCAGGAGGAGCAGATACTCT 60.053 47.826 0.00 0.00 39.12 3.24
2459 2754 4.167113 AGTTCAGGAGGAGCAGATACTCTA 59.833 45.833 0.00 0.00 39.12 2.43
2460 2755 4.093472 TCAGGAGGAGCAGATACTCTAC 57.907 50.000 0.00 0.00 39.12 2.59
2461 2756 3.719479 TCAGGAGGAGCAGATACTCTACT 59.281 47.826 0.00 0.00 39.12 2.57
2462 2757 4.167113 TCAGGAGGAGCAGATACTCTACTT 59.833 45.833 0.00 0.00 39.12 2.24
2463 2758 4.518970 CAGGAGGAGCAGATACTCTACTTC 59.481 50.000 0.00 0.00 39.12 3.01
2464 2759 3.824443 GGAGGAGCAGATACTCTACTTCC 59.176 52.174 0.00 0.00 39.12 3.46
2465 2760 4.465886 GAGGAGCAGATACTCTACTTCCA 58.534 47.826 0.00 0.00 35.76 3.53
2466 2761 4.469657 AGGAGCAGATACTCTACTTCCAG 58.530 47.826 0.00 0.00 36.87 3.86
2467 2762 4.167113 AGGAGCAGATACTCTACTTCCAGA 59.833 45.833 0.00 0.00 36.87 3.86
2468 2763 5.076873 GGAGCAGATACTCTACTTCCAGAT 58.923 45.833 0.00 0.00 36.87 2.90
2469 2764 5.538433 GGAGCAGATACTCTACTTCCAGATT 59.462 44.000 0.00 0.00 36.87 2.40
2470 2765 6.041523 GGAGCAGATACTCTACTTCCAGATTT 59.958 42.308 0.00 0.00 36.87 2.17
2471 2766 7.418483 GGAGCAGATACTCTACTTCCAGATTTT 60.418 40.741 0.00 0.00 36.87 1.82
2472 2767 7.496747 AGCAGATACTCTACTTCCAGATTTTC 58.503 38.462 0.00 0.00 0.00 2.29
2473 2768 7.124901 AGCAGATACTCTACTTCCAGATTTTCA 59.875 37.037 0.00 0.00 0.00 2.69
2474 2769 7.223777 GCAGATACTCTACTTCCAGATTTTCAC 59.776 40.741 0.00 0.00 0.00 3.18
2475 2770 7.708752 CAGATACTCTACTTCCAGATTTTCACC 59.291 40.741 0.00 0.00 0.00 4.02
2476 2771 5.825593 ACTCTACTTCCAGATTTTCACCA 57.174 39.130 0.00 0.00 0.00 4.17
2477 2772 6.380079 ACTCTACTTCCAGATTTTCACCAT 57.620 37.500 0.00 0.00 0.00 3.55
2478 2773 6.784031 ACTCTACTTCCAGATTTTCACCATT 58.216 36.000 0.00 0.00 0.00 3.16
2479 2774 7.918076 ACTCTACTTCCAGATTTTCACCATTA 58.082 34.615 0.00 0.00 0.00 1.90
2480 2775 8.552296 ACTCTACTTCCAGATTTTCACCATTAT 58.448 33.333 0.00 0.00 0.00 1.28
2481 2776 9.401058 CTCTACTTCCAGATTTTCACCATTATT 57.599 33.333 0.00 0.00 0.00 1.40
2482 2777 9.753674 TCTACTTCCAGATTTTCACCATTATTT 57.246 29.630 0.00 0.00 0.00 1.40
2485 2780 8.869109 ACTTCCAGATTTTCACCATTATTTTCA 58.131 29.630 0.00 0.00 0.00 2.69
2486 2781 9.880157 CTTCCAGATTTTCACCATTATTTTCAT 57.120 29.630 0.00 0.00 0.00 2.57
2487 2782 9.656040 TTCCAGATTTTCACCATTATTTTCATG 57.344 29.630 0.00 0.00 0.00 3.07
2488 2783 8.814931 TCCAGATTTTCACCATTATTTTCATGT 58.185 29.630 0.00 0.00 0.00 3.21
2519 2814 9.654663 AGAAAGATTGACATAACAAGTACTACC 57.345 33.333 0.00 0.00 33.22 3.18
2520 2815 9.431887 GAAAGATTGACATAACAAGTACTACCA 57.568 33.333 0.00 0.00 33.22 3.25
2521 2816 9.787435 AAAGATTGACATAACAAGTACTACCAA 57.213 29.630 0.00 0.00 33.22 3.67
2522 2817 9.436957 AAGATTGACATAACAAGTACTACCAAG 57.563 33.333 0.00 0.00 33.22 3.61
2523 2818 8.812972 AGATTGACATAACAAGTACTACCAAGA 58.187 33.333 0.00 0.00 33.22 3.02
2524 2819 9.601217 GATTGACATAACAAGTACTACCAAGAT 57.399 33.333 0.00 0.00 33.22 2.40
2525 2820 9.959721 ATTGACATAACAAGTACTACCAAGATT 57.040 29.630 0.00 0.00 33.22 2.40
2526 2821 9.787435 TTGACATAACAAGTACTACCAAGATTT 57.213 29.630 0.00 0.00 0.00 2.17
2527 2822 9.214957 TGACATAACAAGTACTACCAAGATTTG 57.785 33.333 0.00 0.00 0.00 2.32
2528 2823 9.216117 GACATAACAAGTACTACCAAGATTTGT 57.784 33.333 0.00 0.00 0.00 2.83
2532 2827 8.828688 AACAAGTACTACCAAGATTTGTACTC 57.171 34.615 0.00 0.00 41.70 2.59
2533 2828 7.384477 ACAAGTACTACCAAGATTTGTACTCC 58.616 38.462 0.00 0.00 41.70 3.85
2534 2829 6.541934 AGTACTACCAAGATTTGTACTCCC 57.458 41.667 0.00 0.00 39.37 4.30
2535 2830 6.262207 AGTACTACCAAGATTTGTACTCCCT 58.738 40.000 0.00 0.00 39.37 4.20
2536 2831 5.678955 ACTACCAAGATTTGTACTCCCTC 57.321 43.478 0.00 0.00 0.00 4.30
2537 2832 4.470304 ACTACCAAGATTTGTACTCCCTCC 59.530 45.833 0.00 0.00 0.00 4.30
2538 2833 2.236395 ACCAAGATTTGTACTCCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
2539 2834 2.236395 CCAAGATTTGTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
2540 2835 3.522553 CAAGATTTGTACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
2541 2836 3.103080 AGATTTGTACTCCCTCCGTCT 57.897 47.619 0.00 0.00 0.00 4.18
2542 2837 4.246712 AGATTTGTACTCCCTCCGTCTA 57.753 45.455 0.00 0.00 0.00 2.59
2543 2838 4.208746 AGATTTGTACTCCCTCCGTCTAG 58.791 47.826 0.00 0.00 0.00 2.43
2544 2839 2.431954 TTGTACTCCCTCCGTCTAGG 57.568 55.000 0.00 0.00 42.97 3.02
2545 2840 1.293062 TGTACTCCCTCCGTCTAGGT 58.707 55.000 0.00 0.00 41.99 3.08
2546 2841 1.064906 TGTACTCCCTCCGTCTAGGTG 60.065 57.143 0.00 0.00 41.99 4.00
2547 2842 1.064832 GTACTCCCTCCGTCTAGGTGT 60.065 57.143 0.00 0.00 41.99 4.16
2548 2843 1.293062 ACTCCCTCCGTCTAGGTGTA 58.707 55.000 0.00 0.00 41.99 2.90
2549 2844 1.851653 ACTCCCTCCGTCTAGGTGTAT 59.148 52.381 0.00 0.00 41.99 2.29
2550 2845 3.051581 ACTCCCTCCGTCTAGGTGTATA 58.948 50.000 0.00 0.00 41.99 1.47
2551 2846 3.461085 ACTCCCTCCGTCTAGGTGTATAA 59.539 47.826 0.00 0.00 41.99 0.98
2552 2847 4.073549 CTCCCTCCGTCTAGGTGTATAAG 58.926 52.174 0.00 0.00 41.99 1.73
2553 2848 3.461085 TCCCTCCGTCTAGGTGTATAAGT 59.539 47.826 0.00 0.00 41.99 2.24
2554 2849 3.819902 CCCTCCGTCTAGGTGTATAAGTC 59.180 52.174 0.00 0.00 41.99 3.01
2555 2850 4.458397 CCTCCGTCTAGGTGTATAAGTCA 58.542 47.826 0.00 0.00 41.99 3.41
2556 2851 5.071370 CCTCCGTCTAGGTGTATAAGTCAT 58.929 45.833 0.00 0.00 41.99 3.06
2557 2852 5.181622 CCTCCGTCTAGGTGTATAAGTCATC 59.818 48.000 0.00 0.00 41.99 2.92
2558 2853 5.938279 TCCGTCTAGGTGTATAAGTCATCT 58.062 41.667 0.00 0.00 41.99 2.90
2559 2854 6.363065 TCCGTCTAGGTGTATAAGTCATCTT 58.637 40.000 0.00 0.00 41.99 2.40
2560 2855 7.512130 TCCGTCTAGGTGTATAAGTCATCTTA 58.488 38.462 0.00 0.00 41.99 2.10
2561 2856 7.660617 TCCGTCTAGGTGTATAAGTCATCTTAG 59.339 40.741 0.00 0.00 39.07 2.18
2562 2857 7.094720 CCGTCTAGGTGTATAAGTCATCTTAGG 60.095 44.444 0.00 0.00 36.10 2.69
2563 2858 7.444792 CGTCTAGGTGTATAAGTCATCTTAGGT 59.555 40.741 0.00 0.00 39.17 3.08
2564 2859 9.134055 GTCTAGGTGTATAAGTCATCTTAGGTT 57.866 37.037 0.00 0.00 39.17 3.50
2568 2863 8.368668 AGGTGTATAAGTCATCTTAGGTTATGC 58.631 37.037 0.00 0.00 39.17 3.14
2569 2864 8.148351 GGTGTATAAGTCATCTTAGGTTATGCA 58.852 37.037 0.00 0.00 39.17 3.96
2570 2865 9.712305 GTGTATAAGTCATCTTAGGTTATGCAT 57.288 33.333 3.79 3.79 39.17 3.96
2571 2866 9.710900 TGTATAAGTCATCTTAGGTTATGCATG 57.289 33.333 10.16 0.00 39.17 4.06
2572 2867 9.155975 GTATAAGTCATCTTAGGTTATGCATGG 57.844 37.037 10.16 0.00 39.17 3.66
2573 2868 4.392940 AGTCATCTTAGGTTATGCATGGC 58.607 43.478 10.16 1.31 0.00 4.40
2574 2869 3.187227 GTCATCTTAGGTTATGCATGGCG 59.813 47.826 10.16 0.00 0.00 5.69
2575 2870 3.070878 TCATCTTAGGTTATGCATGGCGA 59.929 43.478 10.16 0.00 0.00 5.54
2576 2871 2.833794 TCTTAGGTTATGCATGGCGAC 58.166 47.619 10.16 2.74 0.00 5.19
2587 2882 4.697756 TGGCGACAAAGGCGGAGG 62.698 66.667 0.00 0.00 39.82 4.30
2589 2884 4.388499 GCGACAAAGGCGGAGGGA 62.388 66.667 0.00 0.00 0.00 4.20
2590 2885 2.345991 CGACAAAGGCGGAGGGAA 59.654 61.111 0.00 0.00 0.00 3.97
2591 2886 1.302192 CGACAAAGGCGGAGGGAAA 60.302 57.895 0.00 0.00 0.00 3.13
2592 2887 0.887387 CGACAAAGGCGGAGGGAAAA 60.887 55.000 0.00 0.00 0.00 2.29
2593 2888 1.324383 GACAAAGGCGGAGGGAAAAA 58.676 50.000 0.00 0.00 0.00 1.94
2594 2889 1.000607 GACAAAGGCGGAGGGAAAAAC 60.001 52.381 0.00 0.00 0.00 2.43
2595 2890 0.039527 CAAAGGCGGAGGGAAAAACG 60.040 55.000 0.00 0.00 0.00 3.60
2596 2891 0.179012 AAAGGCGGAGGGAAAAACGA 60.179 50.000 0.00 0.00 0.00 3.85
2597 2892 0.605589 AAGGCGGAGGGAAAAACGAG 60.606 55.000 0.00 0.00 0.00 4.18
2598 2893 1.004200 GGCGGAGGGAAAAACGAGA 60.004 57.895 0.00 0.00 0.00 4.04
2599 2894 1.019805 GGCGGAGGGAAAAACGAGAG 61.020 60.000 0.00 0.00 0.00 3.20
2600 2895 0.037605 GCGGAGGGAAAAACGAGAGA 60.038 55.000 0.00 0.00 0.00 3.10
2601 2896 1.607251 GCGGAGGGAAAAACGAGAGAA 60.607 52.381 0.00 0.00 0.00 2.87
2602 2897 2.067013 CGGAGGGAAAAACGAGAGAAC 58.933 52.381 0.00 0.00 0.00 3.01
2603 2898 2.288886 CGGAGGGAAAAACGAGAGAACT 60.289 50.000 0.00 0.00 0.00 3.01
2604 2899 3.741249 GGAGGGAAAAACGAGAGAACTT 58.259 45.455 0.00 0.00 0.00 2.66
2605 2900 4.560108 CGGAGGGAAAAACGAGAGAACTTA 60.560 45.833 0.00 0.00 0.00 2.24
2606 2901 5.303165 GGAGGGAAAAACGAGAGAACTTAA 58.697 41.667 0.00 0.00 0.00 1.85
2607 2902 5.938710 GGAGGGAAAAACGAGAGAACTTAAT 59.061 40.000 0.00 0.00 0.00 1.40
2608 2903 6.128254 GGAGGGAAAAACGAGAGAACTTAATG 60.128 42.308 0.00 0.00 0.00 1.90
2609 2904 6.296803 AGGGAAAAACGAGAGAACTTAATGT 58.703 36.000 0.00 0.00 0.00 2.71
2610 2905 6.771267 AGGGAAAAACGAGAGAACTTAATGTT 59.229 34.615 0.00 0.00 42.38 2.71
2611 2906 7.284716 AGGGAAAAACGAGAGAACTTAATGTTT 59.715 33.333 0.00 0.00 39.30 2.83
2612 2907 7.919091 GGGAAAAACGAGAGAACTTAATGTTTT 59.081 33.333 0.00 0.00 39.30 2.43
2613 2908 9.297586 GGAAAAACGAGAGAACTTAATGTTTTT 57.702 29.630 11.34 11.34 45.36 1.94
2637 2932 8.909708 TTTTGCTAGTTAATGTCATTGCATAC 57.090 30.769 8.39 1.94 0.00 2.39
2638 2933 7.622893 TTGCTAGTTAATGTCATTGCATACA 57.377 32.000 8.39 0.00 0.00 2.29
2639 2934 7.622893 TGCTAGTTAATGTCATTGCATACAA 57.377 32.000 8.39 0.00 40.87 2.41
2641 2936 9.336171 TGCTAGTTAATGTCATTGCATACAATA 57.664 29.630 8.39 0.00 44.83 1.90
2651 2946 9.579768 TGTCATTGCATACAATAAATTAACCAC 57.420 29.630 0.00 0.00 44.83 4.16
2652 2947 9.801873 GTCATTGCATACAATAAATTAACCACT 57.198 29.630 0.00 0.00 44.83 4.00
2653 2948 9.800433 TCATTGCATACAATAAATTAACCACTG 57.200 29.630 0.00 0.00 44.83 3.66
2654 2949 8.542132 CATTGCATACAATAAATTAACCACTGC 58.458 33.333 0.00 0.00 44.83 4.40
2655 2950 7.163001 TGCATACAATAAATTAACCACTGCA 57.837 32.000 0.00 0.00 32.84 4.41
2656 2951 7.780064 TGCATACAATAAATTAACCACTGCAT 58.220 30.769 0.00 0.00 30.54 3.96
2657 2952 7.705752 TGCATACAATAAATTAACCACTGCATG 59.294 33.333 0.00 0.00 30.54 4.06
2658 2953 7.706179 GCATACAATAAATTAACCACTGCATGT 59.294 33.333 0.00 0.00 0.00 3.21
2659 2954 9.236691 CATACAATAAATTAACCACTGCATGTC 57.763 33.333 0.00 0.00 0.00 3.06
2660 2955 7.225784 ACAATAAATTAACCACTGCATGTCA 57.774 32.000 0.00 0.00 0.00 3.58
2661 2956 7.839907 ACAATAAATTAACCACTGCATGTCAT 58.160 30.769 0.00 0.00 0.00 3.06
2662 2957 7.760794 ACAATAAATTAACCACTGCATGTCATG 59.239 33.333 8.56 8.56 0.00 3.07
2663 2958 5.726980 AAATTAACCACTGCATGTCATGT 57.273 34.783 14.26 0.00 0.00 3.21
2664 2959 5.726980 AATTAACCACTGCATGTCATGTT 57.273 34.783 14.26 2.48 0.00 2.71
2665 2960 5.726980 ATTAACCACTGCATGTCATGTTT 57.273 34.783 14.26 0.00 0.00 2.83
2666 2961 3.374220 AACCACTGCATGTCATGTTTG 57.626 42.857 14.26 8.62 0.00 2.93
2667 2962 1.614903 ACCACTGCATGTCATGTTTGG 59.385 47.619 19.80 19.80 34.06 3.28
2668 2963 1.614903 CCACTGCATGTCATGTTTGGT 59.385 47.619 14.26 5.69 0.00 3.67
2669 2964 2.819019 CCACTGCATGTCATGTTTGGTA 59.181 45.455 14.26 0.00 0.00 3.25
2670 2965 3.366273 CCACTGCATGTCATGTTTGGTAC 60.366 47.826 14.26 0.00 0.00 3.34
2671 2966 3.503363 CACTGCATGTCATGTTTGGTACT 59.497 43.478 14.26 0.00 0.00 2.73
2672 2967 3.753272 ACTGCATGTCATGTTTGGTACTC 59.247 43.478 14.26 0.00 0.00 2.59
2673 2968 3.749226 TGCATGTCATGTTTGGTACTCA 58.251 40.909 14.26 0.00 0.00 3.41
2674 2969 4.334552 TGCATGTCATGTTTGGTACTCAT 58.665 39.130 14.26 0.00 0.00 2.90
2675 2970 4.766373 TGCATGTCATGTTTGGTACTCATT 59.234 37.500 14.26 0.00 0.00 2.57
2676 2971 5.097529 GCATGTCATGTTTGGTACTCATTG 58.902 41.667 14.26 0.00 0.00 2.82
2677 2972 5.106197 GCATGTCATGTTTGGTACTCATTGA 60.106 40.000 14.26 0.00 0.00 2.57
2678 2973 6.549061 CATGTCATGTTTGGTACTCATTGAG 58.451 40.000 12.17 12.17 35.52 3.02
2679 2974 5.863965 TGTCATGTTTGGTACTCATTGAGA 58.136 37.500 20.33 1.49 33.32 3.27
2690 2985 1.372582 TCATTGAGAGAATGCACGGC 58.627 50.000 0.00 0.00 0.00 5.68
2691 2986 0.379669 CATTGAGAGAATGCACGGCC 59.620 55.000 0.00 0.00 0.00 6.13
2692 2987 0.749454 ATTGAGAGAATGCACGGCCC 60.749 55.000 0.00 0.00 0.00 5.80
2693 2988 2.123248 TTGAGAGAATGCACGGCCCA 62.123 55.000 0.00 0.00 0.00 5.36
2694 2989 2.045926 AGAGAATGCACGGCCCAC 60.046 61.111 0.00 0.00 0.00 4.61
2695 2990 2.359850 GAGAATGCACGGCCCACA 60.360 61.111 0.00 0.00 0.00 4.17
2696 2991 1.750399 GAGAATGCACGGCCCACAT 60.750 57.895 0.00 0.00 0.00 3.21
2697 2992 1.718757 GAGAATGCACGGCCCACATC 61.719 60.000 0.00 0.00 0.00 3.06
2698 2993 1.750399 GAATGCACGGCCCACATCT 60.750 57.895 0.00 0.00 0.00 2.90
2699 2994 1.718757 GAATGCACGGCCCACATCTC 61.719 60.000 0.00 0.00 0.00 2.75
2700 2995 2.202236 AATGCACGGCCCACATCTCT 62.202 55.000 0.00 0.00 0.00 3.10
2701 2996 2.045926 GCACGGCCCACATCTCTT 60.046 61.111 0.00 0.00 0.00 2.85
2702 2997 1.220749 GCACGGCCCACATCTCTTA 59.779 57.895 0.00 0.00 0.00 2.10
2703 2998 0.179045 GCACGGCCCACATCTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
2704 2999 1.747206 GCACGGCCCACATCTCTTATT 60.747 52.381 0.00 0.00 0.00 1.40
2705 3000 1.942657 CACGGCCCACATCTCTTATTG 59.057 52.381 0.00 0.00 0.00 1.90
2706 3001 1.134098 ACGGCCCACATCTCTTATTGG 60.134 52.381 0.00 0.00 0.00 3.16
2707 3002 1.134098 CGGCCCACATCTCTTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
2708 3003 2.683742 CGGCCCACATCTCTTATTGGTT 60.684 50.000 0.00 0.00 0.00 3.67
2709 3004 2.689983 GGCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
2710 3005 3.620488 GCCCACATCTCTTATTGGTTGA 58.380 45.455 0.00 0.00 0.00 3.18
2711 3006 4.210331 GCCCACATCTCTTATTGGTTGAT 58.790 43.478 0.00 0.00 0.00 2.57
2712 3007 5.376625 GCCCACATCTCTTATTGGTTGATA 58.623 41.667 0.00 0.00 0.00 2.15
2713 3008 6.006449 GCCCACATCTCTTATTGGTTGATAT 58.994 40.000 0.00 0.00 0.00 1.63
2714 3009 6.072286 GCCCACATCTCTTATTGGTTGATATG 60.072 42.308 0.00 0.00 0.00 1.78
2715 3010 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
2716 3011 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
2717 3012 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
2718 3013 8.554528 CACATCTCTTATTGGTTGATATGTCAC 58.445 37.037 0.00 0.00 33.11 3.67
2719 3014 7.439356 ACATCTCTTATTGGTTGATATGTCACG 59.561 37.037 0.00 0.00 33.11 4.35
2720 3015 7.107639 TCTCTTATTGGTTGATATGTCACGA 57.892 36.000 0.00 0.00 33.11 4.35
2721 3016 7.552459 TCTCTTATTGGTTGATATGTCACGAA 58.448 34.615 0.00 0.00 33.11 3.85
2722 3017 8.038351 TCTCTTATTGGTTGATATGTCACGAAA 58.962 33.333 0.00 0.00 33.11 3.46
2723 3018 7.970384 TCTTATTGGTTGATATGTCACGAAAC 58.030 34.615 0.00 0.00 33.11 2.78
2724 3019 7.604545 TCTTATTGGTTGATATGTCACGAAACA 59.395 33.333 0.00 0.00 33.11 2.83
2725 3020 6.567687 ATTGGTTGATATGTCACGAAACAA 57.432 33.333 0.00 0.00 33.11 2.83
2726 3021 5.605564 TGGTTGATATGTCACGAAACAAG 57.394 39.130 0.00 0.00 33.11 3.16
2727 3022 5.301555 TGGTTGATATGTCACGAAACAAGA 58.698 37.500 0.00 0.00 33.11 3.02
2728 3023 5.760743 TGGTTGATATGTCACGAAACAAGAA 59.239 36.000 0.00 0.00 33.11 2.52
2729 3024 6.261158 TGGTTGATATGTCACGAAACAAGAAA 59.739 34.615 0.00 0.00 33.11 2.52
2730 3025 6.577427 GGTTGATATGTCACGAAACAAGAAAC 59.423 38.462 0.00 0.00 33.11 2.78
2731 3026 5.911421 TGATATGTCACGAAACAAGAAACG 58.089 37.500 0.00 0.00 31.81 3.60
2732 3027 5.692654 TGATATGTCACGAAACAAGAAACGA 59.307 36.000 0.00 0.00 31.81 3.85
2733 3028 3.918258 TGTCACGAAACAAGAAACGAG 57.082 42.857 0.00 0.00 0.00 4.18
2734 3029 3.513662 TGTCACGAAACAAGAAACGAGA 58.486 40.909 0.00 0.00 0.00 4.04
2735 3030 3.927758 TGTCACGAAACAAGAAACGAGAA 59.072 39.130 0.00 0.00 0.00 2.87
2736 3031 4.032445 TGTCACGAAACAAGAAACGAGAAG 59.968 41.667 0.00 0.00 0.00 2.85
2737 3032 3.554324 TCACGAAACAAGAAACGAGAAGG 59.446 43.478 0.00 0.00 0.00 3.46
2738 3033 2.870411 ACGAAACAAGAAACGAGAAGGG 59.130 45.455 0.00 0.00 0.00 3.95
2739 3034 3.128349 CGAAACAAGAAACGAGAAGGGA 58.872 45.455 0.00 0.00 0.00 4.20
2740 3035 3.184581 CGAAACAAGAAACGAGAAGGGAG 59.815 47.826 0.00 0.00 0.00 4.30
2741 3036 3.840124 AACAAGAAACGAGAAGGGAGT 57.160 42.857 0.00 0.00 0.00 3.85
2742 3037 3.840124 ACAAGAAACGAGAAGGGAGTT 57.160 42.857 0.00 0.00 0.00 3.01
2743 3038 4.950205 ACAAGAAACGAGAAGGGAGTTA 57.050 40.909 0.00 0.00 0.00 2.24
2744 3039 5.286267 ACAAGAAACGAGAAGGGAGTTAA 57.714 39.130 0.00 0.00 0.00 2.01
2745 3040 5.866207 ACAAGAAACGAGAAGGGAGTTAAT 58.134 37.500 0.00 0.00 0.00 1.40
2746 3041 5.701290 ACAAGAAACGAGAAGGGAGTTAATG 59.299 40.000 0.00 0.00 0.00 1.90
2747 3042 5.485209 AGAAACGAGAAGGGAGTTAATGT 57.515 39.130 0.00 0.00 0.00 2.71
2748 3043 6.600882 AGAAACGAGAAGGGAGTTAATGTA 57.399 37.500 0.00 0.00 0.00 2.29
2749 3044 6.396450 AGAAACGAGAAGGGAGTTAATGTAC 58.604 40.000 0.00 0.00 0.00 2.90
2750 3045 4.732672 ACGAGAAGGGAGTTAATGTACC 57.267 45.455 0.00 0.00 0.00 3.34
2751 3046 3.129988 ACGAGAAGGGAGTTAATGTACCG 59.870 47.826 0.00 0.00 0.00 4.02
2752 3047 3.129988 CGAGAAGGGAGTTAATGTACCGT 59.870 47.826 0.00 0.00 0.00 4.83
2753 3048 4.430908 GAGAAGGGAGTTAATGTACCGTG 58.569 47.826 0.00 0.00 0.00 4.94
2754 3049 2.685850 AGGGAGTTAATGTACCGTGC 57.314 50.000 0.00 0.00 0.00 5.34
2755 3050 1.208776 AGGGAGTTAATGTACCGTGCC 59.791 52.381 0.00 0.00 0.00 5.01
2756 3051 1.208776 GGGAGTTAATGTACCGTGCCT 59.791 52.381 0.00 0.00 0.00 4.75
2757 3052 2.431782 GGGAGTTAATGTACCGTGCCTA 59.568 50.000 0.00 0.00 0.00 3.93
2758 3053 3.118665 GGGAGTTAATGTACCGTGCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
2759 3054 4.117685 GGAGTTAATGTACCGTGCCTAAG 58.882 47.826 0.00 0.00 0.00 2.18
2760 3055 4.382362 GGAGTTAATGTACCGTGCCTAAGT 60.382 45.833 0.00 0.00 0.00 2.24
2761 3056 4.501071 AGTTAATGTACCGTGCCTAAGTG 58.499 43.478 0.00 0.00 0.00 3.16
2762 3057 4.020839 AGTTAATGTACCGTGCCTAAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
2763 3058 3.412237 AATGTACCGTGCCTAAGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
2764 3059 2.914695 TGTACCGTGCCTAAGTGTTT 57.085 45.000 0.00 0.00 0.00 2.83
2765 3060 3.196939 TGTACCGTGCCTAAGTGTTTT 57.803 42.857 0.00 0.00 0.00 2.43
2766 3061 2.873472 TGTACCGTGCCTAAGTGTTTTG 59.127 45.455 0.00 0.00 0.00 2.44
2767 3062 2.047002 ACCGTGCCTAAGTGTTTTGT 57.953 45.000 0.00 0.00 0.00 2.83
2768 3063 1.673920 ACCGTGCCTAAGTGTTTTGTG 59.326 47.619 0.00 0.00 0.00 3.33
2769 3064 1.944024 CCGTGCCTAAGTGTTTTGTGA 59.056 47.619 0.00 0.00 0.00 3.58
2770 3065 2.552315 CCGTGCCTAAGTGTTTTGTGAT 59.448 45.455 0.00 0.00 0.00 3.06
2771 3066 3.004315 CCGTGCCTAAGTGTTTTGTGATT 59.996 43.478 0.00 0.00 0.00 2.57
2772 3067 4.214545 CCGTGCCTAAGTGTTTTGTGATTA 59.785 41.667 0.00 0.00 0.00 1.75
2773 3068 5.106317 CCGTGCCTAAGTGTTTTGTGATTAT 60.106 40.000 0.00 0.00 0.00 1.28
2774 3069 6.378582 CGTGCCTAAGTGTTTTGTGATTATT 58.621 36.000 0.00 0.00 0.00 1.40
2775 3070 6.861055 CGTGCCTAAGTGTTTTGTGATTATTT 59.139 34.615 0.00 0.00 0.00 1.40
2776 3071 7.148983 CGTGCCTAAGTGTTTTGTGATTATTTG 60.149 37.037 0.00 0.00 0.00 2.32
2777 3072 7.116233 GTGCCTAAGTGTTTTGTGATTATTTGG 59.884 37.037 0.00 0.00 0.00 3.28
2778 3073 7.151976 GCCTAAGTGTTTTGTGATTATTTGGT 58.848 34.615 0.00 0.00 0.00 3.67
2779 3074 7.655732 GCCTAAGTGTTTTGTGATTATTTGGTT 59.344 33.333 0.00 0.00 0.00 3.67
2780 3075 9.541143 CCTAAGTGTTTTGTGATTATTTGGTTT 57.459 29.630 0.00 0.00 0.00 3.27
2783 3078 8.125728 AGTGTTTTGTGATTATTTGGTTTTCG 57.874 30.769 0.00 0.00 0.00 3.46
2784 3079 7.762159 AGTGTTTTGTGATTATTTGGTTTTCGT 59.238 29.630 0.00 0.00 0.00 3.85
2785 3080 9.021863 GTGTTTTGTGATTATTTGGTTTTCGTA 57.978 29.630 0.00 0.00 0.00 3.43
2786 3081 9.582431 TGTTTTGTGATTATTTGGTTTTCGTAA 57.418 25.926 0.00 0.00 0.00 3.18
2788 3083 8.804688 TTTGTGATTATTTGGTTTTCGTAAGG 57.195 30.769 0.00 0.00 38.47 2.69
2789 3084 7.513371 TGTGATTATTTGGTTTTCGTAAGGT 57.487 32.000 0.00 0.00 38.47 3.50
2790 3085 7.364200 TGTGATTATTTGGTTTTCGTAAGGTG 58.636 34.615 0.00 0.00 38.47 4.00
2791 3086 7.228906 TGTGATTATTTGGTTTTCGTAAGGTGA 59.771 33.333 0.00 0.00 38.47 4.02
2792 3087 7.536281 GTGATTATTTGGTTTTCGTAAGGTGAC 59.464 37.037 0.00 0.00 38.47 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.593956 AAACCACTCGGAGGCTCCC 61.594 63.158 27.36 10.25 35.59 4.30
47 48 5.217978 AGTTTGGTCATGTTAACTCGGTA 57.782 39.130 7.22 0.00 0.00 4.02
55 56 6.588204 AGAGTACACAAGTTTGGTCATGTTA 58.412 36.000 0.00 0.00 0.00 2.41
81 82 2.289195 GGTGAGACCGTGTGGAATACAA 60.289 50.000 0.00 0.00 41.89 2.41
171 172 2.287977 AAACAAGGTAAGGGGCAGAC 57.712 50.000 0.00 0.00 0.00 3.51
181 182 3.393278 ACCTGTAGAGCCAAAACAAGGTA 59.607 43.478 0.00 0.00 0.00 3.08
256 257 6.859420 TCAACATGAAAAATCTTCGTCTCA 57.141 33.333 0.00 0.00 0.00 3.27
297 298 6.183360 GGGGCACAAAACGTAATTAATATGGA 60.183 38.462 0.00 0.00 0.00 3.41
302 303 4.767928 TCAGGGGCACAAAACGTAATTAAT 59.232 37.500 0.00 0.00 0.00 1.40
367 369 3.399181 CCGAAGTGGGCCCAGCTA 61.399 66.667 29.55 0.00 0.00 3.32
404 408 3.702048 CCGTTGGCCGAAGAGGGA 61.702 66.667 7.61 0.00 41.48 4.20
407 411 1.153628 CCTACCGTTGGCCGAAGAG 60.154 63.158 7.61 0.35 39.56 2.85
465 499 9.450807 AACTATGCATAAAAATCGAAACTATGC 57.549 29.630 18.08 18.08 43.27 3.14
683 730 2.279517 GAGCGACCTATGCGTGGG 60.280 66.667 6.80 6.80 37.44 4.61
688 735 1.300542 GCAGGAGAGCGACCTATGC 60.301 63.158 0.00 0.00 35.84 3.14
693 740 4.200283 CGGAGCAGGAGAGCGACC 62.200 72.222 0.00 0.00 40.15 4.79
797 844 2.747855 GTTGCGCCAGGAAGGAGG 60.748 66.667 4.18 0.00 41.22 4.30
1050 1098 2.027751 GTCGTCGGCCTAGGATGC 59.972 66.667 14.75 0.00 0.00 3.91
1247 1295 4.065281 GGAGGACGGTCACCACGG 62.065 72.222 10.76 0.00 35.23 4.94
1893 1948 1.888512 TCTGCTGCCAAAAGAATCCAC 59.111 47.619 0.00 0.00 0.00 4.02
1958 2013 1.133407 CACGGAGCTACTGGAGAAGAC 59.867 57.143 0.00 0.00 0.00 3.01
1963 2018 0.529337 CATGCACGGAGCTACTGGAG 60.529 60.000 0.00 0.00 45.94 3.86
1997 2052 9.197306 TCTAACAGCAAGGTAATATCAACTCTA 57.803 33.333 0.00 0.00 0.00 2.43
1998 2053 8.079211 TCTAACAGCAAGGTAATATCAACTCT 57.921 34.615 0.00 0.00 0.00 3.24
1999 2054 8.198109 TCTCTAACAGCAAGGTAATATCAACTC 58.802 37.037 0.00 0.00 0.00 3.01
2038 2093 6.894103 ACTTTCATGAAAAATCTAGGGATGCT 59.106 34.615 20.82 0.00 31.75 3.79
2244 2539 7.892731 GTCGTGAAAAAGAAACAAAATTGACTG 59.107 33.333 0.00 0.00 0.00 3.51
2245 2540 7.812669 AGTCGTGAAAAAGAAACAAAATTGACT 59.187 29.630 0.00 0.00 0.00 3.41
2249 2544 8.983724 TGAAAGTCGTGAAAAAGAAACAAAATT 58.016 25.926 0.00 0.00 0.00 1.82
2259 2554 6.801862 ACAAACTTCTGAAAGTCGTGAAAAAG 59.198 34.615 8.22 0.00 45.07 2.27
2276 2571 4.975502 TGATGAAATGCGAACACAAACTTC 59.024 37.500 0.00 0.00 0.00 3.01
2277 2572 4.930963 TGATGAAATGCGAACACAAACTT 58.069 34.783 0.00 0.00 0.00 2.66
2278 2573 4.566545 TGATGAAATGCGAACACAAACT 57.433 36.364 0.00 0.00 0.00 2.66
2279 2574 5.332506 CCTTTGATGAAATGCGAACACAAAC 60.333 40.000 0.00 0.00 0.00 2.93
2280 2575 4.744137 CCTTTGATGAAATGCGAACACAAA 59.256 37.500 0.00 0.00 0.00 2.83
2281 2576 4.037327 TCCTTTGATGAAATGCGAACACAA 59.963 37.500 0.00 0.00 0.00 3.33
2282 2577 3.567585 TCCTTTGATGAAATGCGAACACA 59.432 39.130 0.00 0.00 0.00 3.72
2283 2578 4.159377 TCCTTTGATGAAATGCGAACAC 57.841 40.909 0.00 0.00 0.00 3.32
2284 2579 4.844998 TTCCTTTGATGAAATGCGAACA 57.155 36.364 0.00 0.00 0.00 3.18
2285 2580 5.691754 ACTTTTCCTTTGATGAAATGCGAAC 59.308 36.000 0.00 0.00 32.87 3.95
2286 2581 5.691305 CACTTTTCCTTTGATGAAATGCGAA 59.309 36.000 0.00 0.00 32.87 4.70
2287 2582 5.221880 CACTTTTCCTTTGATGAAATGCGA 58.778 37.500 0.00 0.00 32.87 5.10
2288 2583 4.386652 CCACTTTTCCTTTGATGAAATGCG 59.613 41.667 0.00 0.00 32.87 4.73
2289 2584 4.692155 CCCACTTTTCCTTTGATGAAATGC 59.308 41.667 0.00 0.00 32.87 3.56
2290 2585 6.100404 TCCCACTTTTCCTTTGATGAAATG 57.900 37.500 0.00 0.00 34.69 2.32
2291 2586 6.745794 TTCCCACTTTTCCTTTGATGAAAT 57.254 33.333 0.00 0.00 32.19 2.17
2292 2587 6.099557 ACATTCCCACTTTTCCTTTGATGAAA 59.900 34.615 0.00 0.00 0.00 2.69
2293 2588 5.602145 ACATTCCCACTTTTCCTTTGATGAA 59.398 36.000 0.00 0.00 0.00 2.57
2294 2589 5.147032 ACATTCCCACTTTTCCTTTGATGA 58.853 37.500 0.00 0.00 0.00 2.92
2295 2590 5.473066 ACATTCCCACTTTTCCTTTGATG 57.527 39.130 0.00 0.00 0.00 3.07
2296 2591 7.797121 ATAACATTCCCACTTTTCCTTTGAT 57.203 32.000 0.00 0.00 0.00 2.57
2297 2592 7.610580 AATAACATTCCCACTTTTCCTTTGA 57.389 32.000 0.00 0.00 0.00 2.69
2298 2593 8.558700 CAAAATAACATTCCCACTTTTCCTTTG 58.441 33.333 0.00 0.00 0.00 2.77
2299 2594 8.271458 ACAAAATAACATTCCCACTTTTCCTTT 58.729 29.630 0.00 0.00 0.00 3.11
2300 2595 7.714813 CACAAAATAACATTCCCACTTTTCCTT 59.285 33.333 0.00 0.00 0.00 3.36
2301 2596 7.216494 CACAAAATAACATTCCCACTTTTCCT 58.784 34.615 0.00 0.00 0.00 3.36
2302 2597 6.073276 GCACAAAATAACATTCCCACTTTTCC 60.073 38.462 0.00 0.00 0.00 3.13
2303 2598 6.705825 AGCACAAAATAACATTCCCACTTTTC 59.294 34.615 0.00 0.00 0.00 2.29
2304 2599 6.482973 CAGCACAAAATAACATTCCCACTTTT 59.517 34.615 0.00 0.00 0.00 2.27
2305 2600 5.990996 CAGCACAAAATAACATTCCCACTTT 59.009 36.000 0.00 0.00 0.00 2.66
2306 2601 5.304101 TCAGCACAAAATAACATTCCCACTT 59.696 36.000 0.00 0.00 0.00 3.16
2307 2602 4.832266 TCAGCACAAAATAACATTCCCACT 59.168 37.500 0.00 0.00 0.00 4.00
2308 2603 5.132897 TCAGCACAAAATAACATTCCCAC 57.867 39.130 0.00 0.00 0.00 4.61
2309 2604 5.798125 TTCAGCACAAAATAACATTCCCA 57.202 34.783 0.00 0.00 0.00 4.37
2310 2605 7.671495 AAATTCAGCACAAAATAACATTCCC 57.329 32.000 0.00 0.00 0.00 3.97
2311 2606 7.534918 GCAAAATTCAGCACAAAATAACATTCC 59.465 33.333 0.00 0.00 0.00 3.01
2406 2701 8.044060 TGCTCCTGATAAACAGTAAAATCAAG 57.956 34.615 0.00 0.00 44.40 3.02
2417 2712 6.003326 TGAACTCAAATGCTCCTGATAAACA 58.997 36.000 0.00 0.00 0.00 2.83
2455 2750 8.970859 ATAATGGTGAAAATCTGGAAGTAGAG 57.029 34.615 0.00 0.00 33.76 2.43
2456 2751 9.753674 AAATAATGGTGAAAATCTGGAAGTAGA 57.246 29.630 0.00 0.00 33.76 2.59
2459 2754 8.869109 TGAAAATAATGGTGAAAATCTGGAAGT 58.131 29.630 0.00 0.00 33.76 3.01
2460 2755 9.880157 ATGAAAATAATGGTGAAAATCTGGAAG 57.120 29.630 0.00 0.00 0.00 3.46
2461 2756 9.656040 CATGAAAATAATGGTGAAAATCTGGAA 57.344 29.630 0.00 0.00 0.00 3.53
2462 2757 8.814931 ACATGAAAATAATGGTGAAAATCTGGA 58.185 29.630 0.00 0.00 0.00 3.86
2493 2788 9.654663 GGTAGTACTTGTTATGTCAATCTTTCT 57.345 33.333 0.00 0.00 0.00 2.52
2494 2789 9.431887 TGGTAGTACTTGTTATGTCAATCTTTC 57.568 33.333 0.00 0.00 0.00 2.62
2495 2790 9.787435 TTGGTAGTACTTGTTATGTCAATCTTT 57.213 29.630 0.00 0.00 0.00 2.52
2496 2791 9.436957 CTTGGTAGTACTTGTTATGTCAATCTT 57.563 33.333 0.00 0.00 0.00 2.40
2497 2792 8.812972 TCTTGGTAGTACTTGTTATGTCAATCT 58.187 33.333 0.00 0.00 0.00 2.40
2498 2793 8.997621 TCTTGGTAGTACTTGTTATGTCAATC 57.002 34.615 0.00 0.00 0.00 2.67
2499 2794 9.959721 AATCTTGGTAGTACTTGTTATGTCAAT 57.040 29.630 0.00 0.00 0.00 2.57
2500 2795 9.787435 AAATCTTGGTAGTACTTGTTATGTCAA 57.213 29.630 0.00 0.00 0.00 3.18
2501 2796 9.214957 CAAATCTTGGTAGTACTTGTTATGTCA 57.785 33.333 0.00 0.00 0.00 3.58
2502 2797 9.216117 ACAAATCTTGGTAGTACTTGTTATGTC 57.784 33.333 0.00 0.00 34.12 3.06
2506 2801 9.918630 GAGTACAAATCTTGGTAGTACTTGTTA 57.081 33.333 0.00 0.00 43.73 2.41
2507 2802 7.876582 GGAGTACAAATCTTGGTAGTACTTGTT 59.123 37.037 0.00 0.00 43.73 2.83
2508 2803 7.384477 GGAGTACAAATCTTGGTAGTACTTGT 58.616 38.462 0.00 4.66 43.73 3.16
2509 2804 6.817140 GGGAGTACAAATCTTGGTAGTACTTG 59.183 42.308 0.00 0.00 43.73 3.16
2510 2805 6.729569 AGGGAGTACAAATCTTGGTAGTACTT 59.270 38.462 0.00 0.00 43.73 2.24
2511 2806 6.262207 AGGGAGTACAAATCTTGGTAGTACT 58.738 40.000 0.00 0.00 45.65 2.73
2512 2807 6.406737 GGAGGGAGTACAAATCTTGGTAGTAC 60.407 46.154 0.00 0.00 36.26 2.73
2513 2808 5.659971 GGAGGGAGTACAAATCTTGGTAGTA 59.340 44.000 0.00 0.00 34.12 1.82
2514 2809 4.470304 GGAGGGAGTACAAATCTTGGTAGT 59.530 45.833 0.00 0.00 34.12 2.73
2515 2810 4.441634 CGGAGGGAGTACAAATCTTGGTAG 60.442 50.000 0.00 0.00 34.12 3.18
2516 2811 3.449737 CGGAGGGAGTACAAATCTTGGTA 59.550 47.826 0.00 0.00 34.12 3.25
2517 2812 2.236395 CGGAGGGAGTACAAATCTTGGT 59.764 50.000 0.00 0.00 34.12 3.67
2518 2813 2.236395 ACGGAGGGAGTACAAATCTTGG 59.764 50.000 0.00 0.00 34.12 3.61
2519 2814 3.195825 AGACGGAGGGAGTACAAATCTTG 59.804 47.826 0.00 0.00 0.00 3.02
2520 2815 3.442076 AGACGGAGGGAGTACAAATCTT 58.558 45.455 0.00 0.00 0.00 2.40
2521 2816 3.103080 AGACGGAGGGAGTACAAATCT 57.897 47.619 0.00 0.00 0.00 2.40
2522 2817 3.318557 CCTAGACGGAGGGAGTACAAATC 59.681 52.174 0.00 0.00 32.39 2.17
2523 2818 3.297736 CCTAGACGGAGGGAGTACAAAT 58.702 50.000 0.00 0.00 32.39 2.32
2524 2819 2.042162 ACCTAGACGGAGGGAGTACAAA 59.958 50.000 0.00 0.00 41.36 2.83
2525 2820 1.637553 ACCTAGACGGAGGGAGTACAA 59.362 52.381 0.00 0.00 41.36 2.41
2526 2821 1.064906 CACCTAGACGGAGGGAGTACA 60.065 57.143 0.00 0.00 41.36 2.90
2527 2822 1.064832 ACACCTAGACGGAGGGAGTAC 60.065 57.143 5.42 0.00 41.36 2.73
2528 2823 1.293062 ACACCTAGACGGAGGGAGTA 58.707 55.000 5.42 0.00 41.36 2.59
2529 2824 1.293062 TACACCTAGACGGAGGGAGT 58.707 55.000 5.42 5.82 41.36 3.85
2530 2825 2.660670 ATACACCTAGACGGAGGGAG 57.339 55.000 5.42 0.78 41.36 4.30
2531 2826 3.461085 ACTTATACACCTAGACGGAGGGA 59.539 47.826 5.42 0.00 41.36 4.20
2532 2827 3.819902 GACTTATACACCTAGACGGAGGG 59.180 52.174 5.42 0.00 41.36 4.30
2533 2828 4.458397 TGACTTATACACCTAGACGGAGG 58.542 47.826 0.00 0.00 42.89 4.30
2534 2829 5.998981 AGATGACTTATACACCTAGACGGAG 59.001 44.000 0.00 0.00 36.31 4.63
2535 2830 5.938279 AGATGACTTATACACCTAGACGGA 58.062 41.667 0.00 0.00 36.31 4.69
2536 2831 6.636562 AAGATGACTTATACACCTAGACGG 57.363 41.667 0.00 0.00 34.28 4.79
2537 2832 7.444792 ACCTAAGATGACTTATACACCTAGACG 59.555 40.741 0.00 0.00 37.85 4.18
2538 2833 8.694581 ACCTAAGATGACTTATACACCTAGAC 57.305 38.462 0.00 0.00 37.85 2.59
2542 2837 8.368668 GCATAACCTAAGATGACTTATACACCT 58.631 37.037 0.00 0.00 37.85 4.00
2543 2838 8.148351 TGCATAACCTAAGATGACTTATACACC 58.852 37.037 0.00 0.00 37.85 4.16
2544 2839 9.712305 ATGCATAACCTAAGATGACTTATACAC 57.288 33.333 0.00 0.00 37.85 2.90
2545 2840 9.710900 CATGCATAACCTAAGATGACTTATACA 57.289 33.333 0.00 0.00 37.85 2.29
2546 2841 9.155975 CCATGCATAACCTAAGATGACTTATAC 57.844 37.037 0.00 0.00 37.85 1.47
2547 2842 7.824289 GCCATGCATAACCTAAGATGACTTATA 59.176 37.037 0.00 0.00 37.85 0.98
2548 2843 6.656693 GCCATGCATAACCTAAGATGACTTAT 59.343 38.462 0.00 0.00 37.85 1.73
2549 2844 5.997746 GCCATGCATAACCTAAGATGACTTA 59.002 40.000 0.00 0.00 37.53 2.24
2550 2845 4.823989 GCCATGCATAACCTAAGATGACTT 59.176 41.667 0.00 0.00 39.81 3.01
2551 2846 4.392940 GCCATGCATAACCTAAGATGACT 58.607 43.478 0.00 0.00 0.00 3.41
2552 2847 3.187227 CGCCATGCATAACCTAAGATGAC 59.813 47.826 0.00 0.00 0.00 3.06
2553 2848 3.070878 TCGCCATGCATAACCTAAGATGA 59.929 43.478 0.00 0.00 0.00 2.92
2554 2849 3.187227 GTCGCCATGCATAACCTAAGATG 59.813 47.826 0.00 0.00 0.00 2.90
2555 2850 3.181455 TGTCGCCATGCATAACCTAAGAT 60.181 43.478 0.00 0.00 0.00 2.40
2556 2851 2.169561 TGTCGCCATGCATAACCTAAGA 59.830 45.455 0.00 0.00 0.00 2.10
2557 2852 2.560504 TGTCGCCATGCATAACCTAAG 58.439 47.619 0.00 0.00 0.00 2.18
2558 2853 2.700722 TGTCGCCATGCATAACCTAA 57.299 45.000 0.00 0.00 0.00 2.69
2559 2854 2.700722 TTGTCGCCATGCATAACCTA 57.299 45.000 0.00 0.00 0.00 3.08
2560 2855 1.745087 CTTTGTCGCCATGCATAACCT 59.255 47.619 0.00 0.00 0.00 3.50
2561 2856 1.202290 CCTTTGTCGCCATGCATAACC 60.202 52.381 0.00 0.00 0.00 2.85
2562 2857 1.798813 GCCTTTGTCGCCATGCATAAC 60.799 52.381 0.00 0.00 0.00 1.89
2563 2858 0.455410 GCCTTTGTCGCCATGCATAA 59.545 50.000 0.00 0.00 0.00 1.90
2564 2859 1.713937 CGCCTTTGTCGCCATGCATA 61.714 55.000 0.00 0.00 0.00 3.14
2565 2860 2.887360 GCCTTTGTCGCCATGCAT 59.113 55.556 0.00 0.00 0.00 3.96
2566 2861 3.736100 CGCCTTTGTCGCCATGCA 61.736 61.111 0.00 0.00 0.00 3.96
2567 2862 4.481112 CCGCCTTTGTCGCCATGC 62.481 66.667 0.00 0.00 0.00 4.06
2568 2863 2.745884 TCCGCCTTTGTCGCCATG 60.746 61.111 0.00 0.00 0.00 3.66
2569 2864 2.436646 CTCCGCCTTTGTCGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
2570 2865 4.697756 CCTCCGCCTTTGTCGCCA 62.698 66.667 0.00 0.00 0.00 5.69
2572 2867 3.894547 TTCCCTCCGCCTTTGTCGC 62.895 63.158 0.00 0.00 0.00 5.19
2573 2868 0.887387 TTTTCCCTCCGCCTTTGTCG 60.887 55.000 0.00 0.00 0.00 4.35
2574 2869 1.000607 GTTTTTCCCTCCGCCTTTGTC 60.001 52.381 0.00 0.00 0.00 3.18
2575 2870 1.037493 GTTTTTCCCTCCGCCTTTGT 58.963 50.000 0.00 0.00 0.00 2.83
2576 2871 0.039527 CGTTTTTCCCTCCGCCTTTG 60.040 55.000 0.00 0.00 0.00 2.77
2577 2872 0.179012 TCGTTTTTCCCTCCGCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
2578 2873 0.605589 CTCGTTTTTCCCTCCGCCTT 60.606 55.000 0.00 0.00 0.00 4.35
2579 2874 1.003718 CTCGTTTTTCCCTCCGCCT 60.004 57.895 0.00 0.00 0.00 5.52
2580 2875 1.004200 TCTCGTTTTTCCCTCCGCC 60.004 57.895 0.00 0.00 0.00 6.13
2581 2876 0.037605 TCTCTCGTTTTTCCCTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
2582 2877 2.067013 GTTCTCTCGTTTTTCCCTCCG 58.933 52.381 0.00 0.00 0.00 4.63
2583 2878 3.404224 AGTTCTCTCGTTTTTCCCTCC 57.596 47.619 0.00 0.00 0.00 4.30
2584 2879 6.427242 ACATTAAGTTCTCTCGTTTTTCCCTC 59.573 38.462 0.00 0.00 0.00 4.30
2585 2880 6.296803 ACATTAAGTTCTCTCGTTTTTCCCT 58.703 36.000 0.00 0.00 0.00 4.20
2586 2881 6.555812 ACATTAAGTTCTCTCGTTTTTCCC 57.444 37.500 0.00 0.00 0.00 3.97
2587 2882 8.851960 AAAACATTAAGTTCTCTCGTTTTTCC 57.148 30.769 0.00 0.00 40.26 3.13
2611 2906 9.352784 GTATGCAATGACATTAACTAGCAAAAA 57.647 29.630 12.47 2.04 34.15 1.94
2612 2907 8.518702 TGTATGCAATGACATTAACTAGCAAAA 58.481 29.630 12.47 3.96 34.15 2.44
2613 2908 8.049655 TGTATGCAATGACATTAACTAGCAAA 57.950 30.769 12.47 2.15 34.15 3.68
2614 2909 7.622893 TGTATGCAATGACATTAACTAGCAA 57.377 32.000 12.47 2.78 34.15 3.91
2615 2910 7.622893 TTGTATGCAATGACATTAACTAGCA 57.377 32.000 11.25 11.25 35.03 3.49
2625 2920 9.579768 GTGGTTAATTTATTGTATGCAATGACA 57.420 29.630 18.10 3.40 44.32 3.58
2626 2921 9.801873 AGTGGTTAATTTATTGTATGCAATGAC 57.198 29.630 18.10 7.53 44.32 3.06
2627 2922 9.800433 CAGTGGTTAATTTATTGTATGCAATGA 57.200 29.630 18.10 8.04 44.32 2.57
2628 2923 8.542132 GCAGTGGTTAATTTATTGTATGCAATG 58.458 33.333 18.10 0.57 44.32 2.82
2629 2924 8.256605 TGCAGTGGTTAATTTATTGTATGCAAT 58.743 29.630 13.75 13.75 46.14 3.56
2630 2925 7.606349 TGCAGTGGTTAATTTATTGTATGCAA 58.394 30.769 0.00 0.00 36.00 4.08
2631 2926 7.163001 TGCAGTGGTTAATTTATTGTATGCA 57.837 32.000 0.00 0.00 36.52 3.96
2632 2927 7.706179 ACATGCAGTGGTTAATTTATTGTATGC 59.294 33.333 0.00 0.00 32.70 3.14
2633 2928 9.236691 GACATGCAGTGGTTAATTTATTGTATG 57.763 33.333 0.00 0.00 34.67 2.39
2634 2929 8.965819 TGACATGCAGTGGTTAATTTATTGTAT 58.034 29.630 0.00 0.00 0.00 2.29
2635 2930 8.341892 TGACATGCAGTGGTTAATTTATTGTA 57.658 30.769 0.00 0.00 0.00 2.41
2636 2931 7.225784 TGACATGCAGTGGTTAATTTATTGT 57.774 32.000 0.00 0.00 0.00 2.71
2637 2932 7.760794 ACATGACATGCAGTGGTTAATTTATTG 59.239 33.333 15.49 0.00 0.00 1.90
2638 2933 7.839907 ACATGACATGCAGTGGTTAATTTATT 58.160 30.769 15.49 0.00 0.00 1.40
2639 2934 7.408756 ACATGACATGCAGTGGTTAATTTAT 57.591 32.000 15.49 0.00 0.00 1.40
2640 2935 6.832520 ACATGACATGCAGTGGTTAATTTA 57.167 33.333 15.49 0.00 0.00 1.40
2641 2936 5.726980 ACATGACATGCAGTGGTTAATTT 57.273 34.783 15.49 0.00 0.00 1.82
2642 2937 5.726980 AACATGACATGCAGTGGTTAATT 57.273 34.783 15.49 0.00 0.00 1.40
2643 2938 5.472148 CAAACATGACATGCAGTGGTTAAT 58.528 37.500 15.49 0.00 0.00 1.40
2644 2939 4.261952 CCAAACATGACATGCAGTGGTTAA 60.262 41.667 15.49 0.00 0.00 2.01
2645 2940 3.255395 CCAAACATGACATGCAGTGGTTA 59.745 43.478 15.49 0.00 0.00 2.85
2646 2941 2.036217 CCAAACATGACATGCAGTGGTT 59.964 45.455 15.49 0.00 0.00 3.67
2647 2942 1.614903 CCAAACATGACATGCAGTGGT 59.385 47.619 15.49 0.00 0.00 4.16
2648 2943 1.614903 ACCAAACATGACATGCAGTGG 59.385 47.619 22.15 22.15 35.82 4.00
2649 2944 3.503363 AGTACCAAACATGACATGCAGTG 59.497 43.478 15.49 10.34 0.00 3.66
2650 2945 3.753272 GAGTACCAAACATGACATGCAGT 59.247 43.478 15.49 9.80 0.00 4.40
2651 2946 3.752747 TGAGTACCAAACATGACATGCAG 59.247 43.478 15.49 5.48 0.00 4.41
2652 2947 3.749226 TGAGTACCAAACATGACATGCA 58.251 40.909 15.49 0.00 0.00 3.96
2653 2948 4.970662 ATGAGTACCAAACATGACATGC 57.029 40.909 15.49 0.00 0.00 4.06
2654 2949 6.372381 TCTCAATGAGTACCAAACATGACATG 59.628 38.462 14.02 14.02 0.00 3.21
2655 2950 6.475504 TCTCAATGAGTACCAAACATGACAT 58.524 36.000 10.36 0.00 0.00 3.06
2656 2951 5.863965 TCTCAATGAGTACCAAACATGACA 58.136 37.500 10.36 0.00 0.00 3.58
2657 2952 6.166279 TCTCTCAATGAGTACCAAACATGAC 58.834 40.000 10.36 0.00 43.13 3.06
2658 2953 6.358974 TCTCTCAATGAGTACCAAACATGA 57.641 37.500 10.36 0.00 43.13 3.07
2659 2954 7.470079 CATTCTCTCAATGAGTACCAAACATG 58.530 38.462 10.36 0.00 43.13 3.21
2660 2955 6.094603 GCATTCTCTCAATGAGTACCAAACAT 59.905 38.462 10.36 0.00 43.13 2.71
2661 2956 5.412594 GCATTCTCTCAATGAGTACCAAACA 59.587 40.000 10.36 0.00 43.13 2.83
2662 2957 5.412594 TGCATTCTCTCAATGAGTACCAAAC 59.587 40.000 10.36 0.00 43.13 2.93
2663 2958 5.412594 GTGCATTCTCTCAATGAGTACCAAA 59.587 40.000 10.36 0.00 43.13 3.28
2664 2959 4.937620 GTGCATTCTCTCAATGAGTACCAA 59.062 41.667 10.36 0.00 43.13 3.67
2665 2960 4.507710 GTGCATTCTCTCAATGAGTACCA 58.492 43.478 10.36 0.00 43.13 3.25
2666 2961 3.553511 CGTGCATTCTCTCAATGAGTACC 59.446 47.826 10.36 0.00 43.13 3.34
2667 2962 3.553511 CCGTGCATTCTCTCAATGAGTAC 59.446 47.826 10.36 0.00 43.13 2.73
2668 2963 3.785486 CCGTGCATTCTCTCAATGAGTA 58.215 45.455 10.36 0.00 43.13 2.59
2669 2964 2.625737 CCGTGCATTCTCTCAATGAGT 58.374 47.619 10.36 0.00 43.13 3.41
2670 2965 1.329906 GCCGTGCATTCTCTCAATGAG 59.670 52.381 3.38 3.38 43.96 2.90
2671 2966 1.372582 GCCGTGCATTCTCTCAATGA 58.627 50.000 0.00 0.00 0.00 2.57
2672 2967 0.379669 GGCCGTGCATTCTCTCAATG 59.620 55.000 0.00 0.00 0.00 2.82
2673 2968 0.749454 GGGCCGTGCATTCTCTCAAT 60.749 55.000 0.00 0.00 0.00 2.57
2674 2969 1.377202 GGGCCGTGCATTCTCTCAA 60.377 57.895 0.00 0.00 0.00 3.02
2675 2970 2.268920 GGGCCGTGCATTCTCTCA 59.731 61.111 0.00 0.00 0.00 3.27
2676 2971 2.109126 GTGGGCCGTGCATTCTCTC 61.109 63.158 0.00 0.00 0.00 3.20
2677 2972 2.045926 GTGGGCCGTGCATTCTCT 60.046 61.111 0.00 0.00 0.00 3.10
2678 2973 1.718757 GATGTGGGCCGTGCATTCTC 61.719 60.000 0.00 0.00 0.00 2.87
2679 2974 1.750399 GATGTGGGCCGTGCATTCT 60.750 57.895 0.00 0.00 0.00 2.40
2680 2975 1.718757 GAGATGTGGGCCGTGCATTC 61.719 60.000 0.00 1.50 0.00 2.67
2681 2976 1.750399 GAGATGTGGGCCGTGCATT 60.750 57.895 0.00 0.00 0.00 3.56
2682 2977 2.124570 GAGATGTGGGCCGTGCAT 60.125 61.111 0.00 3.14 0.00 3.96
2683 2978 1.549243 TAAGAGATGTGGGCCGTGCA 61.549 55.000 0.00 0.00 0.00 4.57
2684 2979 0.179045 ATAAGAGATGTGGGCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
2685 2980 1.942657 CAATAAGAGATGTGGGCCGTG 59.057 52.381 0.00 0.00 0.00 4.94
2686 2981 1.134098 CCAATAAGAGATGTGGGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
2687 2982 1.134098 ACCAATAAGAGATGTGGGCCG 60.134 52.381 0.00 0.00 35.32 6.13
2688 2983 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
2689 2984 3.620488 TCAACCAATAAGAGATGTGGGC 58.380 45.455 0.00 0.00 35.32 5.36
2690 2985 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
2691 2986 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
2692 2987 8.554528 GTGACATATCAACCAATAAGAGATGTG 58.445 37.037 6.64 0.00 42.33 3.21
2693 2988 7.439356 CGTGACATATCAACCAATAAGAGATGT 59.561 37.037 0.00 0.00 44.20 3.06
2694 2989 7.653311 TCGTGACATATCAACCAATAAGAGATG 59.347 37.037 0.00 0.00 36.31 2.90
2695 2990 7.726216 TCGTGACATATCAACCAATAAGAGAT 58.274 34.615 0.00 0.00 36.31 2.75
2696 2991 7.107639 TCGTGACATATCAACCAATAAGAGA 57.892 36.000 0.00 0.00 36.31 3.10
2697 2992 7.770801 TTCGTGACATATCAACCAATAAGAG 57.229 36.000 0.00 0.00 36.31 2.85
2698 2993 7.604545 TGTTTCGTGACATATCAACCAATAAGA 59.395 33.333 0.00 0.00 36.31 2.10
2699 2994 7.747888 TGTTTCGTGACATATCAACCAATAAG 58.252 34.615 0.00 0.00 36.31 1.73
2700 2995 7.674471 TGTTTCGTGACATATCAACCAATAA 57.326 32.000 0.00 0.00 36.31 1.40
2701 2996 7.604545 TCTTGTTTCGTGACATATCAACCAATA 59.395 33.333 0.00 0.00 36.31 1.90
2702 2997 6.429692 TCTTGTTTCGTGACATATCAACCAAT 59.570 34.615 0.00 0.00 36.31 3.16
2703 2998 5.760743 TCTTGTTTCGTGACATATCAACCAA 59.239 36.000 0.00 0.00 36.31 3.67
2704 2999 5.301555 TCTTGTTTCGTGACATATCAACCA 58.698 37.500 0.00 0.00 36.31 3.67
2705 3000 5.856126 TCTTGTTTCGTGACATATCAACC 57.144 39.130 0.00 0.00 36.31 3.77
2706 3001 6.299966 CGTTTCTTGTTTCGTGACATATCAAC 59.700 38.462 0.00 0.00 36.31 3.18
2707 3002 6.201234 TCGTTTCTTGTTTCGTGACATATCAA 59.799 34.615 0.00 0.00 36.31 2.57
2708 3003 5.692654 TCGTTTCTTGTTTCGTGACATATCA 59.307 36.000 0.00 0.00 0.00 2.15
2709 3004 6.089016 TCTCGTTTCTTGTTTCGTGACATATC 59.911 38.462 0.00 0.00 0.00 1.63
2710 3005 5.924254 TCTCGTTTCTTGTTTCGTGACATAT 59.076 36.000 0.00 0.00 0.00 1.78
2711 3006 5.283294 TCTCGTTTCTTGTTTCGTGACATA 58.717 37.500 0.00 0.00 0.00 2.29
2712 3007 4.116961 TCTCGTTTCTTGTTTCGTGACAT 58.883 39.130 0.00 0.00 0.00 3.06
2713 3008 3.513662 TCTCGTTTCTTGTTTCGTGACA 58.486 40.909 0.00 0.00 0.00 3.58
2714 3009 4.506217 CTTCTCGTTTCTTGTTTCGTGAC 58.494 43.478 0.00 0.00 0.00 3.67
2715 3010 3.554324 CCTTCTCGTTTCTTGTTTCGTGA 59.446 43.478 0.00 0.00 0.00 4.35
2716 3011 3.303132 CCCTTCTCGTTTCTTGTTTCGTG 60.303 47.826 0.00 0.00 0.00 4.35
2717 3012 2.870411 CCCTTCTCGTTTCTTGTTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
2718 3013 3.128349 TCCCTTCTCGTTTCTTGTTTCG 58.872 45.455 0.00 0.00 0.00 3.46
2719 3014 4.127907 ACTCCCTTCTCGTTTCTTGTTTC 58.872 43.478 0.00 0.00 0.00 2.78
2720 3015 4.152284 ACTCCCTTCTCGTTTCTTGTTT 57.848 40.909 0.00 0.00 0.00 2.83
2721 3016 3.840124 ACTCCCTTCTCGTTTCTTGTT 57.160 42.857 0.00 0.00 0.00 2.83
2722 3017 3.840124 AACTCCCTTCTCGTTTCTTGT 57.160 42.857 0.00 0.00 0.00 3.16
2723 3018 5.701290 ACATTAACTCCCTTCTCGTTTCTTG 59.299 40.000 0.00 0.00 0.00 3.02
2724 3019 5.866207 ACATTAACTCCCTTCTCGTTTCTT 58.134 37.500 0.00 0.00 0.00 2.52
2725 3020 5.485209 ACATTAACTCCCTTCTCGTTTCT 57.515 39.130 0.00 0.00 0.00 2.52
2726 3021 5.579904 GGTACATTAACTCCCTTCTCGTTTC 59.420 44.000 0.00 0.00 0.00 2.78
2727 3022 5.485620 GGTACATTAACTCCCTTCTCGTTT 58.514 41.667 0.00 0.00 0.00 3.60
2728 3023 4.381292 CGGTACATTAACTCCCTTCTCGTT 60.381 45.833 0.00 0.00 0.00 3.85
2729 3024 3.129988 CGGTACATTAACTCCCTTCTCGT 59.870 47.826 0.00 0.00 0.00 4.18
2730 3025 3.129988 ACGGTACATTAACTCCCTTCTCG 59.870 47.826 0.00 0.00 0.00 4.04
2731 3026 4.430908 CACGGTACATTAACTCCCTTCTC 58.569 47.826 0.00 0.00 0.00 2.87
2732 3027 3.369157 GCACGGTACATTAACTCCCTTCT 60.369 47.826 0.00 0.00 0.00 2.85
2733 3028 2.934553 GCACGGTACATTAACTCCCTTC 59.065 50.000 0.00 0.00 0.00 3.46
2734 3029 2.355412 GGCACGGTACATTAACTCCCTT 60.355 50.000 0.00 0.00 0.00 3.95
2735 3030 1.208776 GGCACGGTACATTAACTCCCT 59.791 52.381 0.00 0.00 0.00 4.20
2736 3031 1.208776 AGGCACGGTACATTAACTCCC 59.791 52.381 0.00 0.00 0.00 4.30
2737 3032 2.685850 AGGCACGGTACATTAACTCC 57.314 50.000 0.00 0.00 0.00 3.85
2738 3033 4.565564 CACTTAGGCACGGTACATTAACTC 59.434 45.833 0.00 0.00 0.00 3.01
2739 3034 4.020839 ACACTTAGGCACGGTACATTAACT 60.021 41.667 0.00 0.00 0.00 2.24
2740 3035 4.248058 ACACTTAGGCACGGTACATTAAC 58.752 43.478 0.00 0.00 0.00 2.01
2741 3036 4.540359 ACACTTAGGCACGGTACATTAA 57.460 40.909 0.00 0.00 0.00 1.40
2742 3037 4.540359 AACACTTAGGCACGGTACATTA 57.460 40.909 0.00 0.00 0.00 1.90
2743 3038 3.412237 AACACTTAGGCACGGTACATT 57.588 42.857 0.00 0.00 0.00 2.71
2744 3039 3.412237 AAACACTTAGGCACGGTACAT 57.588 42.857 0.00 0.00 0.00 2.29
2745 3040 2.873472 CAAAACACTTAGGCACGGTACA 59.127 45.455 0.00 0.00 0.00 2.90
2746 3041 2.874086 ACAAAACACTTAGGCACGGTAC 59.126 45.455 0.00 0.00 0.00 3.34
2747 3042 2.873472 CACAAAACACTTAGGCACGGTA 59.127 45.455 0.00 0.00 0.00 4.02
2748 3043 1.673920 CACAAAACACTTAGGCACGGT 59.326 47.619 0.00 0.00 0.00 4.83
2749 3044 1.944024 TCACAAAACACTTAGGCACGG 59.056 47.619 0.00 0.00 0.00 4.94
2750 3045 3.896648 ATCACAAAACACTTAGGCACG 57.103 42.857 0.00 0.00 0.00 5.34
2751 3046 7.116233 CCAAATAATCACAAAACACTTAGGCAC 59.884 37.037 0.00 0.00 0.00 5.01
2752 3047 7.151308 CCAAATAATCACAAAACACTTAGGCA 58.849 34.615 0.00 0.00 0.00 4.75
2753 3048 7.151976 ACCAAATAATCACAAAACACTTAGGC 58.848 34.615 0.00 0.00 0.00 3.93
2754 3049 9.541143 AAACCAAATAATCACAAAACACTTAGG 57.459 29.630 0.00 0.00 0.00 2.69
2757 3052 8.599774 CGAAAACCAAATAATCACAAAACACTT 58.400 29.630 0.00 0.00 0.00 3.16
2758 3053 7.762159 ACGAAAACCAAATAATCACAAAACACT 59.238 29.630 0.00 0.00 0.00 3.55
2759 3054 7.901002 ACGAAAACCAAATAATCACAAAACAC 58.099 30.769 0.00 0.00 0.00 3.32
2760 3055 9.582431 TTACGAAAACCAAATAATCACAAAACA 57.418 25.926 0.00 0.00 0.00 2.83
2762 3057 9.250624 CCTTACGAAAACCAAATAATCACAAAA 57.749 29.630 0.00 0.00 0.00 2.44
2763 3058 8.414778 ACCTTACGAAAACCAAATAATCACAAA 58.585 29.630 0.00 0.00 0.00 2.83
2764 3059 7.863375 CACCTTACGAAAACCAAATAATCACAA 59.137 33.333 0.00 0.00 0.00 3.33
2765 3060 7.228906 TCACCTTACGAAAACCAAATAATCACA 59.771 33.333 0.00 0.00 0.00 3.58
2766 3061 7.536281 GTCACCTTACGAAAACCAAATAATCAC 59.464 37.037 0.00 0.00 0.00 3.06
2767 3062 7.446013 AGTCACCTTACGAAAACCAAATAATCA 59.554 33.333 0.00 0.00 0.00 2.57
2768 3063 7.813645 AGTCACCTTACGAAAACCAAATAATC 58.186 34.615 0.00 0.00 0.00 1.75
2769 3064 7.754851 AGTCACCTTACGAAAACCAAATAAT 57.245 32.000 0.00 0.00 0.00 1.28
2770 3065 7.571080 AAGTCACCTTACGAAAACCAAATAA 57.429 32.000 0.00 0.00 0.00 1.40
2771 3066 8.086851 GTAAGTCACCTTACGAAAACCAAATA 57.913 34.615 0.00 0.00 42.56 1.40
2772 3067 6.962686 GTAAGTCACCTTACGAAAACCAAAT 58.037 36.000 0.00 0.00 42.56 2.32
2773 3068 6.362210 GTAAGTCACCTTACGAAAACCAAA 57.638 37.500 0.00 0.00 42.56 3.28
2774 3069 5.989551 GTAAGTCACCTTACGAAAACCAA 57.010 39.130 0.00 0.00 42.56 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.