Multiple sequence alignment - TraesCS1D01G173600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G173600 chr1D 100.000 4701 0 0 1 4701 247303215 247307915 0.000000e+00 8682.0
1 TraesCS1D01G173600 chr1D 98.851 87 1 0 4280 4366 247307580 247307494 6.300000e-34 156.0
2 TraesCS1D01G173600 chr1D 91.176 102 7 2 4279 4379 5075910 5075810 2.280000e-28 137.0
3 TraesCS1D01G173600 chr1A 93.233 2202 98 25 240 2427 300107678 300105514 0.000000e+00 3193.0
4 TraesCS1D01G173600 chr1A 87.111 1575 115 44 2418 3938 300105486 300103946 0.000000e+00 1703.0
5 TraesCS1D01G173600 chr1A 92.632 285 7 5 4015 4298 300103471 300103200 9.480000e-107 398.0
6 TraesCS1D01G173600 chr1A 79.023 348 13 16 4348 4692 300103091 300102801 2.890000e-42 183.0
7 TraesCS1D01G173600 chr1B 92.201 2231 112 35 216 2426 330505289 330503101 0.000000e+00 3099.0
8 TraesCS1D01G173600 chr1B 90.674 965 48 21 2933 3868 330502781 330501830 0.000000e+00 1245.0
9 TraesCS1D01G173600 chr1B 85.036 274 22 14 3938 4200 330501600 330501335 1.300000e-65 261.0
10 TraesCS1D01G173600 chr1B 84.516 155 7 7 4550 4701 330501136 330500996 2.280000e-28 137.0
11 TraesCS1D01G173600 chr1B 91.667 60 4 1 3870 3929 330501747 330501689 1.080000e-11 82.4
12 TraesCS1D01G173600 chr1B 95.918 49 1 1 4200 4248 330501299 330501252 1.400000e-10 78.7
13 TraesCS1D01G173600 chr7D 98.765 162 2 0 56 217 249621835 249621996 5.950000e-74 289.0
14 TraesCS1D01G173600 chr2D 96.364 165 5 1 55 219 73737209 73737372 2.160000e-68 270.0
15 TraesCS1D01G173600 chr2D 87.500 64 3 2 4605 4667 410600731 410600672 8.440000e-08 69.4
16 TraesCS1D01G173600 chr2D 97.143 35 1 0 4608 4642 293659742 293659708 5.080000e-05 60.2
17 TraesCS1D01G173600 chr2D 85.246 61 3 3 4607 4666 443243896 443243841 1.830000e-04 58.4
18 TraesCS1D01G173600 chr2B 95.732 164 7 0 54 217 659017214 659017051 1.000000e-66 265.0
19 TraesCS1D01G173600 chr2B 89.447 199 15 6 29 222 754311359 754311162 3.630000e-61 246.0
20 TraesCS1D01G173600 chr2B 94.737 38 2 0 4605 4642 660464191 660464154 5.080000e-05 60.2
21 TraesCS1D01G173600 chr4B 94.675 169 8 1 54 222 537194096 537193929 1.300000e-65 261.0
22 TraesCS1D01G173600 chr4B 93.491 169 10 1 54 222 109656750 109656583 2.810000e-62 250.0
23 TraesCS1D01G173600 chr6B 89.447 199 15 6 29 222 664436219 664436022 3.630000e-61 246.0
24 TraesCS1D01G173600 chr5B 89.447 199 15 6 29 222 356857376 356857573 3.630000e-61 246.0
25 TraesCS1D01G173600 chr3B 88.293 205 19 5 22 222 599874826 599874623 1.690000e-59 241.0
26 TraesCS1D01G173600 chr4D 91.589 107 7 2 4262 4367 5081557 5081662 3.790000e-31 147.0
27 TraesCS1D01G173600 chr4D 92.157 102 7 1 4279 4379 65559754 65559653 4.900000e-30 143.0
28 TraesCS1D01G173600 chr4D 91.176 102 7 2 4279 4379 494781787 494781687 2.280000e-28 137.0
29 TraesCS1D01G173600 chr5D 92.157 102 6 2 4279 4379 184636679 184636579 4.900000e-30 143.0
30 TraesCS1D01G173600 chr5D 87.097 62 2 3 4607 4666 278272919 278272976 1.090000e-06 65.8
31 TraesCS1D01G173600 chr2A 91.262 103 7 2 4265 4366 385904514 385904615 6.340000e-29 139.0
32 TraesCS1D01G173600 chr2A 97.222 36 1 0 4607 4642 18322483 18322518 1.410000e-05 62.1
33 TraesCS1D01G173600 chr6D 91.176 102 7 2 4279 4379 246109158 246109258 2.280000e-28 137.0
34 TraesCS1D01G173600 chr6D 91.176 102 7 2 4279 4379 333950518 333950618 2.280000e-28 137.0
35 TraesCS1D01G173600 chr6D 86.726 113 15 0 2901 3013 460779866 460779754 4.940000e-25 126.0
36 TraesCS1D01G173600 chr6D 94.231 52 3 0 2852 2903 460779946 460779895 3.900000e-11 80.5
37 TraesCS1D01G173600 chr3D 89.091 110 11 1 2901 3010 378194759 378194867 8.210000e-28 135.0
38 TraesCS1D01G173600 chr3D 95.349 43 2 0 2857 2899 378194681 378194723 8.440000e-08 69.4
39 TraesCS1D01G173600 chr4A 87.500 64 3 2 4606 4668 514080069 514080010 8.440000e-08 69.4
40 TraesCS1D01G173600 chr7A 85.938 64 4 2 4607 4669 421785102 421785161 3.930000e-06 63.9
41 TraesCS1D01G173600 chr6A 90.698 43 4 0 4597 4639 135405865 135405907 1.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G173600 chr1D 247303215 247307915 4700 False 8682.000000 8682 100.00000 1 4701 1 chr1D.!!$F1 4700
1 TraesCS1D01G173600 chr1A 300102801 300107678 4877 True 1369.250000 3193 87.99975 240 4692 4 chr1A.!!$R1 4452
2 TraesCS1D01G173600 chr1B 330500996 330505289 4293 True 817.183333 3099 90.00200 216 4701 6 chr1B.!!$R1 4485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 909 0.119358 AACTAGGTCCAAGGCCTCCT 59.881 55.0 14.78 14.78 37.54 3.69 F
1645 1660 0.095417 GGCGTTCGAGATTGAAGTGC 59.905 55.0 0.00 0.39 32.49 4.40 F
2301 2327 1.028905 TTGTTGAACTGGGGAAAGCG 58.971 50.0 0.00 0.00 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1742 0.673985 GAAGTCAGCAAACCAACCCC 59.326 55.0 0.00 0.0 0.00 4.95 R
3473 3632 0.313043 CTGCAGGTCCAAAAGCACTG 59.687 55.0 5.57 0.0 32.87 3.66 R
4001 4671 0.103208 ATAGAAGTTCGAGCCCGCAG 59.897 55.0 0.00 0.0 35.37 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.225497 ATGGCTTGCGAGGTTAGC 57.775 55.556 2.37 0.00 0.00 3.09
20 21 3.178539 GCTTGCGAGGTTAGCCAC 58.821 61.111 2.37 0.00 37.19 5.01
21 22 1.671054 GCTTGCGAGGTTAGCCACA 60.671 57.895 2.37 0.00 37.19 4.17
22 23 1.639298 GCTTGCGAGGTTAGCCACAG 61.639 60.000 2.37 0.00 37.19 3.66
23 24 1.003839 TTGCGAGGTTAGCCACAGG 60.004 57.895 0.00 0.00 37.19 4.00
24 25 1.476845 TTGCGAGGTTAGCCACAGGA 61.477 55.000 0.00 0.00 37.19 3.86
25 26 1.264749 TGCGAGGTTAGCCACAGGAT 61.265 55.000 0.00 0.00 37.19 3.24
26 27 0.750850 GCGAGGTTAGCCACAGGATA 59.249 55.000 0.00 0.00 37.19 2.59
27 28 1.269831 GCGAGGTTAGCCACAGGATAG 60.270 57.143 0.00 0.00 37.19 2.08
28 29 2.307768 CGAGGTTAGCCACAGGATAGA 58.692 52.381 0.00 0.00 37.19 1.98
29 30 2.693591 CGAGGTTAGCCACAGGATAGAA 59.306 50.000 0.00 0.00 37.19 2.10
30 31 3.132289 CGAGGTTAGCCACAGGATAGAAA 59.868 47.826 0.00 0.00 37.19 2.52
31 32 4.382685 CGAGGTTAGCCACAGGATAGAAAA 60.383 45.833 0.00 0.00 37.19 2.29
32 33 5.497474 GAGGTTAGCCACAGGATAGAAAAA 58.503 41.667 0.00 0.00 37.19 1.94
33 34 6.079712 AGGTTAGCCACAGGATAGAAAAAT 57.920 37.500 0.00 0.00 37.19 1.82
34 35 7.208064 AGGTTAGCCACAGGATAGAAAAATA 57.792 36.000 0.00 0.00 37.19 1.40
35 36 7.816411 AGGTTAGCCACAGGATAGAAAAATAT 58.184 34.615 0.00 0.00 37.19 1.28
36 37 7.721399 AGGTTAGCCACAGGATAGAAAAATATG 59.279 37.037 0.00 0.00 37.19 1.78
37 38 7.502561 GGTTAGCCACAGGATAGAAAAATATGT 59.497 37.037 0.00 0.00 34.09 2.29
38 39 6.949352 AGCCACAGGATAGAAAAATATGTG 57.051 37.500 0.00 0.00 37.04 3.21
39 40 5.300286 AGCCACAGGATAGAAAAATATGTGC 59.700 40.000 0.00 0.00 36.20 4.57
40 41 5.067674 GCCACAGGATAGAAAAATATGTGCA 59.932 40.000 0.00 0.00 36.20 4.57
41 42 6.239120 GCCACAGGATAGAAAAATATGTGCAT 60.239 38.462 0.00 0.00 36.20 3.96
42 43 7.040478 GCCACAGGATAGAAAAATATGTGCATA 60.040 37.037 0.00 0.00 36.20 3.14
43 44 9.017509 CCACAGGATAGAAAAATATGTGCATAT 57.982 33.333 0.31 0.31 36.20 1.78
61 62 4.918583 GCATATCTGCTACGAACTACTTCC 59.081 45.833 0.00 0.00 45.32 3.46
62 63 5.278561 GCATATCTGCTACGAACTACTTCCT 60.279 44.000 0.00 0.00 45.32 3.36
63 64 4.904253 ATCTGCTACGAACTACTTCCTC 57.096 45.455 0.00 0.00 0.00 3.71
64 65 3.015327 TCTGCTACGAACTACTTCCTCC 58.985 50.000 0.00 0.00 0.00 4.30
65 66 1.741706 TGCTACGAACTACTTCCTCCG 59.258 52.381 0.00 0.00 0.00 4.63
66 67 1.742268 GCTACGAACTACTTCCTCCGT 59.258 52.381 0.00 0.00 0.00 4.69
67 68 2.163211 GCTACGAACTACTTCCTCCGTT 59.837 50.000 0.00 0.00 0.00 4.44
68 69 3.730362 GCTACGAACTACTTCCTCCGTTC 60.730 52.174 0.00 0.00 34.07 3.95
69 70 1.543358 ACGAACTACTTCCTCCGTTCC 59.457 52.381 0.00 0.00 33.92 3.62
70 71 1.817447 CGAACTACTTCCTCCGTTCCT 59.183 52.381 0.00 0.00 33.92 3.36
71 72 3.012518 CGAACTACTTCCTCCGTTCCTA 58.987 50.000 0.00 0.00 33.92 2.94
72 73 3.441572 CGAACTACTTCCTCCGTTCCTAA 59.558 47.826 0.00 0.00 33.92 2.69
73 74 4.082571 CGAACTACTTCCTCCGTTCCTAAA 60.083 45.833 0.00 0.00 33.92 1.85
74 75 5.393896 CGAACTACTTCCTCCGTTCCTAAAT 60.394 44.000 0.00 0.00 33.92 1.40
75 76 5.340439 ACTACTTCCTCCGTTCCTAAATG 57.660 43.478 0.00 0.00 0.00 2.32
76 77 4.776308 ACTACTTCCTCCGTTCCTAAATGT 59.224 41.667 0.00 0.00 0.00 2.71
77 78 5.954150 ACTACTTCCTCCGTTCCTAAATGTA 59.046 40.000 0.00 0.00 0.00 2.29
78 79 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
79 80 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
80 81 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
81 82 5.334724 TCCTCCGTTCCTAAATGTAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
82 83 5.021458 TCCTCCGTTCCTAAATGTAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
83 84 5.482878 TCCTCCGTTCCTAAATGTAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
84 85 6.013984 TCCTCCGTTCCTAAATGTAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
85 86 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
86 87 5.935789 TCCGTTCCTAAATGTAAGTCTTTGG 59.064 40.000 0.00 0.00 0.00 3.28
87 88 5.935789 CCGTTCCTAAATGTAAGTCTTTGGA 59.064 40.000 0.00 0.00 0.00 3.53
88 89 6.092259 CCGTTCCTAAATGTAAGTCTTTGGAG 59.908 42.308 0.00 0.00 0.00 3.86
89 90 6.872020 CGTTCCTAAATGTAAGTCTTTGGAGA 59.128 38.462 0.00 0.00 0.00 3.71
90 91 7.063544 CGTTCCTAAATGTAAGTCTTTGGAGAG 59.936 40.741 0.00 0.00 31.07 3.20
91 92 7.792364 TCCTAAATGTAAGTCTTTGGAGAGA 57.208 36.000 0.00 0.00 31.07 3.10
92 93 8.380742 TCCTAAATGTAAGTCTTTGGAGAGAT 57.619 34.615 0.00 0.00 31.07 2.75
93 94 8.826765 TCCTAAATGTAAGTCTTTGGAGAGATT 58.173 33.333 0.00 0.00 31.07 2.40
94 95 9.454859 CCTAAATGTAAGTCTTTGGAGAGATTT 57.545 33.333 0.00 0.00 31.07 2.17
96 97 8.924511 AAATGTAAGTCTTTGGAGAGATTTCA 57.075 30.769 0.00 0.00 31.07 2.69
97 98 7.913674 ATGTAAGTCTTTGGAGAGATTTCAC 57.086 36.000 0.00 0.00 31.07 3.18
98 99 7.067496 TGTAAGTCTTTGGAGAGATTTCACT 57.933 36.000 0.00 0.00 31.07 3.41
99 100 8.190326 TGTAAGTCTTTGGAGAGATTTCACTA 57.810 34.615 0.00 0.00 31.07 2.74
100 101 8.816894 TGTAAGTCTTTGGAGAGATTTCACTAT 58.183 33.333 0.00 0.00 31.07 2.12
101 102 9.092876 GTAAGTCTTTGGAGAGATTTCACTATG 57.907 37.037 0.00 0.00 31.07 2.23
102 103 7.487822 AGTCTTTGGAGAGATTTCACTATGA 57.512 36.000 0.00 0.00 31.07 2.15
103 104 7.911651 AGTCTTTGGAGAGATTTCACTATGAA 58.088 34.615 0.00 0.00 31.02 2.57
104 105 7.821846 AGTCTTTGGAGAGATTTCACTATGAAC 59.178 37.037 0.00 0.00 32.04 3.18
105 106 7.065204 GTCTTTGGAGAGATTTCACTATGAACC 59.935 40.741 0.00 0.00 32.04 3.62
106 107 6.373005 TTGGAGAGATTTCACTATGAACCA 57.627 37.500 0.00 0.00 35.89 3.67
107 108 6.566079 TGGAGAGATTTCACTATGAACCAT 57.434 37.500 0.00 0.00 35.89 3.55
108 109 7.675161 TGGAGAGATTTCACTATGAACCATA 57.325 36.000 0.00 0.00 35.89 2.74
109 110 8.267620 TGGAGAGATTTCACTATGAACCATAT 57.732 34.615 0.00 0.00 35.89 1.78
110 111 9.379770 TGGAGAGATTTCACTATGAACCATATA 57.620 33.333 0.00 0.00 35.89 0.86
111 112 9.646427 GGAGAGATTTCACTATGAACCATATAC 57.354 37.037 0.00 0.00 35.89 1.47
112 113 9.347934 GAGAGATTTCACTATGAACCATATACG 57.652 37.037 0.00 0.00 35.89 3.06
113 114 8.307483 AGAGATTTCACTATGAACCATATACGG 58.693 37.037 0.00 0.00 35.89 4.02
114 115 8.190326 AGATTTCACTATGAACCATATACGGA 57.810 34.615 0.00 0.00 35.89 4.69
115 116 8.307483 AGATTTCACTATGAACCATATACGGAG 58.693 37.037 0.00 0.00 35.89 4.63
116 117 5.386958 TCACTATGAACCATATACGGAGC 57.613 43.478 0.00 0.00 0.00 4.70
117 118 4.830600 TCACTATGAACCATATACGGAGCA 59.169 41.667 0.00 0.00 0.00 4.26
118 119 5.303333 TCACTATGAACCATATACGGAGCAA 59.697 40.000 0.00 0.00 0.00 3.91
119 120 5.989168 CACTATGAACCATATACGGAGCAAA 59.011 40.000 0.00 0.00 0.00 3.68
120 121 6.481976 CACTATGAACCATATACGGAGCAAAA 59.518 38.462 0.00 0.00 0.00 2.44
121 122 7.173218 CACTATGAACCATATACGGAGCAAAAT 59.827 37.037 0.00 0.00 0.00 1.82
122 123 5.749596 TGAACCATATACGGAGCAAAATG 57.250 39.130 0.00 0.00 0.00 2.32
123 124 5.432645 TGAACCATATACGGAGCAAAATGA 58.567 37.500 0.00 0.00 0.00 2.57
124 125 5.883115 TGAACCATATACGGAGCAAAATGAA 59.117 36.000 0.00 0.00 0.00 2.57
125 126 6.545666 TGAACCATATACGGAGCAAAATGAAT 59.454 34.615 0.00 0.00 0.00 2.57
126 127 6.317789 ACCATATACGGAGCAAAATGAATG 57.682 37.500 0.00 0.00 0.00 2.67
127 128 6.061441 ACCATATACGGAGCAAAATGAATGA 58.939 36.000 0.00 0.00 0.00 2.57
128 129 6.545666 ACCATATACGGAGCAAAATGAATGAA 59.454 34.615 0.00 0.00 0.00 2.57
129 130 7.231317 ACCATATACGGAGCAAAATGAATGAAT 59.769 33.333 0.00 0.00 0.00 2.57
130 131 7.752239 CCATATACGGAGCAAAATGAATGAATC 59.248 37.037 0.00 0.00 0.00 2.52
131 132 6.949352 ATACGGAGCAAAATGAATGAATCT 57.051 33.333 0.00 0.00 0.00 2.40
132 133 9.725019 ATATACGGAGCAAAATGAATGAATCTA 57.275 29.630 0.00 0.00 0.00 1.98
133 134 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
134 135 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
135 136 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
136 137 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
137 138 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
138 139 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
139 140 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
140 141 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
146 147 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
147 148 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
148 149 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
149 150 9.624373 AATGAATCTACACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
160 161 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
161 162 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
166 167 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
167 168 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
168 169 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
169 170 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
170 171 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
171 172 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
172 173 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
173 174 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
174 175 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
175 176 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
176 177 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
177 178 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
178 179 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
179 180 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
180 181 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
181 182 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
182 183 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
183 184 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
184 185 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
185 186 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
186 187 6.222038 TGTGGTCCATAGTGAAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
187 188 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
188 189 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
189 190 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
190 191 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
191 192 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
192 193 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
193 194 7.492994 GTCCATAGTGAAATCTCTACAAAGACC 59.507 40.741 0.00 0.00 0.00 3.85
194 195 7.400339 TCCATAGTGAAATCTCTACAAAGACCT 59.600 37.037 0.00 0.00 0.00 3.85
195 196 8.696374 CCATAGTGAAATCTCTACAAAGACCTA 58.304 37.037 0.00 0.00 0.00 3.08
217 218 7.155655 CTATATTTAGGAACGGAGGGAGTAC 57.844 44.000 0.00 0.00 0.00 2.73
218 219 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
229 230 5.104193 ACGGAGGGAGTACTACTTTATCAGA 60.104 44.000 4.77 0.00 0.00 3.27
339 341 9.764363 GATTCAAAAGTTAGACAGGGAAATTTT 57.236 29.630 0.00 0.00 34.25 1.82
343 345 3.057526 AGTTAGACAGGGAAATTTTGCGC 60.058 43.478 0.00 0.00 0.00 6.09
362 364 3.637432 CGCAGCACTCCAATTTTAAACA 58.363 40.909 0.00 0.00 0.00 2.83
427 429 0.614812 TGACAGCATAGCCTGAGCAA 59.385 50.000 0.00 0.00 43.56 3.91
474 476 3.384532 CCACCACAAGGCATGGGC 61.385 66.667 7.29 0.00 41.97 5.36
475 477 3.751246 CACCACAAGGCATGGGCG 61.751 66.667 7.29 0.00 41.97 6.13
529 531 1.269936 ACGAAACAGAAACGACGGGAT 60.270 47.619 0.00 0.00 0.00 3.85
562 564 0.985549 GAGACGAAGCACACATCGAC 59.014 55.000 1.84 0.00 39.28 4.20
563 565 0.313987 AGACGAAGCACACATCGACA 59.686 50.000 1.84 0.00 39.28 4.35
757 770 0.999712 GGGGTGGGAATTGGAGAAGA 59.000 55.000 0.00 0.00 0.00 2.87
791 804 1.244019 AAGAGACCAAATGCCACGGC 61.244 55.000 0.00 0.00 42.35 5.68
844 858 5.099042 ACATTTCTGGCCTTCTTATACGT 57.901 39.130 3.32 0.00 0.00 3.57
847 861 4.811969 TTCTGGCCTTCTTATACGTCAA 57.188 40.909 3.32 0.00 0.00 3.18
849 863 4.501071 TCTGGCCTTCTTATACGTCAAAC 58.499 43.478 3.32 0.00 0.00 2.93
895 909 0.119358 AACTAGGTCCAAGGCCTCCT 59.881 55.000 14.78 14.78 37.54 3.69
989 1004 3.847602 CCTGGAGCAGAGGAGCGG 61.848 72.222 0.00 0.00 40.15 5.52
1365 1380 0.984230 CTTCAGGCTTCCAGTGGGTA 59.016 55.000 9.92 0.00 34.93 3.69
1575 1590 1.152922 GGACGTCGAGGAGGAGGAT 60.153 63.158 12.85 0.00 0.00 3.24
1618 1633 1.010046 ACCCCAATGAGGAGATGAGGA 59.990 52.381 0.00 0.00 41.22 3.71
1623 1638 3.494749 CCAATGAGGAGATGAGGAGCTTC 60.495 52.174 0.00 0.00 41.22 3.86
1645 1660 0.095417 GGCGTTCGAGATTGAAGTGC 59.905 55.000 0.00 0.39 32.49 4.40
1653 1668 1.674962 GAGATTGAAGTGCTGGATGGC 59.325 52.381 0.00 0.00 0.00 4.40
1681 1696 1.888638 GTGTTGTTACCGCCACCGT 60.889 57.895 0.00 0.00 0.00 4.83
1727 1742 2.046285 GGAGCGGTGACCAATTGGG 61.046 63.158 27.89 11.11 44.81 4.12
1797 1815 5.105146 GGAGATGGTGAATCTAGACACAACT 60.105 44.000 13.70 9.58 46.12 3.16
1833 1851 6.127619 CGATAGTATCAGGTATCAGCAATGGA 60.128 42.308 10.71 0.00 0.00 3.41
1871 1889 3.385384 TGCACCAGAGGCGGAGAG 61.385 66.667 0.00 0.00 0.00 3.20
1924 1942 1.108776 CATGGATCAGGTGCTTTGGG 58.891 55.000 0.00 0.00 0.00 4.12
1927 1945 1.358787 TGGATCAGGTGCTTTGGGAAT 59.641 47.619 0.00 0.00 0.00 3.01
2117 2137 8.868522 AGTCCAAGAAACATGATAAATCAGAA 57.131 30.769 0.00 0.00 40.64 3.02
2143 2168 7.750229 TCAGAAGAACATATTATCCATTGCC 57.250 36.000 0.00 0.00 0.00 4.52
2146 2171 8.242053 CAGAAGAACATATTATCCATTGCCATC 58.758 37.037 0.00 0.00 0.00 3.51
2161 2186 3.030291 TGCCATCAGTGAAACCTGTTTT 58.970 40.909 0.00 0.00 37.80 2.43
2162 2187 3.068024 TGCCATCAGTGAAACCTGTTTTC 59.932 43.478 0.00 0.00 43.63 2.29
2188 2214 7.506114 TCAAAACACAAGTAGAGGACTATGTT 58.494 34.615 0.00 0.00 44.06 2.71
2223 2249 8.396272 AGCTGTAAATCTTGTGTCAAACTTAT 57.604 30.769 0.00 0.00 0.00 1.73
2224 2250 9.502091 AGCTGTAAATCTTGTGTCAAACTTATA 57.498 29.630 0.00 0.00 0.00 0.98
2225 2251 9.760660 GCTGTAAATCTTGTGTCAAACTTATAG 57.239 33.333 0.00 0.00 0.00 1.31
2230 2256 9.520515 AAATCTTGTGTCAAACTTATAGGATGT 57.479 29.630 0.00 0.00 0.00 3.06
2289 2315 5.415701 GCTCCAGTCTCCAATATTTGTTGAA 59.584 40.000 0.00 0.00 0.00 2.69
2301 2327 1.028905 TTGTTGAACTGGGGAAAGCG 58.971 50.000 0.00 0.00 0.00 4.68
2373 2399 3.801594 ACGAAATTGTTTCAATGTGTGGC 59.198 39.130 0.00 0.00 39.63 5.01
2420 2446 8.129211 AGCAAGTCAATTACTGAAACAACTTAC 58.871 33.333 0.00 0.00 38.88 2.34
2445 2545 8.952278 ACGTGAGCATAAAACCTTTATATTTCA 58.048 29.630 0.00 0.00 0.00 2.69
2476 2577 5.669798 ATGGGCCTTTATTCTCCAGTATT 57.330 39.130 4.53 0.00 0.00 1.89
2527 2629 8.197592 TGACTTACCTTTATCTGGTCAAGTTA 57.802 34.615 0.00 0.00 38.88 2.24
2548 2650 6.651643 AGTTAATGTAACGACCTACATTTGCA 59.348 34.615 19.62 0.00 45.83 4.08
2627 2745 2.041620 TCCATAGCCTGCCTTTGTTTCT 59.958 45.455 0.00 0.00 0.00 2.52
2628 2746 3.265737 TCCATAGCCTGCCTTTGTTTCTA 59.734 43.478 0.00 0.00 0.00 2.10
2642 2760 7.522236 GCCTTTGTTTCTACAGCAGATTTACTT 60.522 37.037 0.00 0.00 35.28 2.24
2655 2773 8.999431 CAGCAGATTTACTTGGTAGTTTCTTTA 58.001 33.333 0.00 0.00 35.78 1.85
2713 2832 5.237779 TCTTTAAGGGAAAAACTGTAGTGCG 59.762 40.000 0.00 0.00 0.00 5.34
2716 2835 2.158726 AGGGAAAAACTGTAGTGCGGAA 60.159 45.455 0.00 0.00 0.00 4.30
2723 2842 2.906354 ACTGTAGTGCGGAATTGATCC 58.094 47.619 0.00 0.00 45.57 3.36
2752 2871 3.111853 TGCAAGTGTGACAGAACTAGG 57.888 47.619 0.00 0.00 0.00 3.02
2781 2900 4.785346 ATGTGTGGGAGAGATATTTGCT 57.215 40.909 0.00 0.00 0.00 3.91
2785 2908 4.333926 GTGTGGGAGAGATATTTGCTGAAC 59.666 45.833 0.00 0.00 0.00 3.18
2817 2941 7.608761 GGGTGTTCCATGTATACAGAAAGTTTA 59.391 37.037 11.91 0.00 35.00 2.01
2880 3004 9.480053 CAGTTTCATGACCAATTCATTTTTAGT 57.520 29.630 0.00 0.00 42.87 2.24
2905 3029 7.866393 GTCTTTAGTCTGTTACACTTGCTTAGA 59.134 37.037 0.00 0.00 0.00 2.10
2913 3037 3.969287 ACACTTGCTTAGAGATGCTGA 57.031 42.857 0.00 0.00 0.00 4.26
2915 3039 4.252073 ACACTTGCTTAGAGATGCTGAAG 58.748 43.478 0.00 0.00 0.00 3.02
2956 3080 2.825861 TCACTTCACGTAAAGGGGAC 57.174 50.000 0.00 0.00 30.27 4.46
2998 3122 5.060662 TCAAATGTTTTGGTGTCGACAAA 57.939 34.783 21.95 9.41 36.15 2.83
3001 3125 3.750639 TGTTTTGGTGTCGACAAACTC 57.249 42.857 21.95 7.65 37.53 3.01
3060 3184 6.267014 GCCCTTTCTTTTCCTACCTTTACTTT 59.733 38.462 0.00 0.00 0.00 2.66
3091 3215 7.445707 TCTGTGTCACTATATGTAAGCTAGAGG 59.554 40.741 4.27 0.00 0.00 3.69
3097 3221 6.815641 CACTATATGTAAGCTAGAGGGCAATG 59.184 42.308 0.00 0.00 34.17 2.82
3132 3264 7.013655 GCATTGTGAAACCCTACATTATCAGAT 59.986 37.037 0.00 0.00 34.36 2.90
3133 3265 7.864108 TTGTGAAACCCTACATTATCAGATG 57.136 36.000 0.00 0.00 34.36 2.90
3180 3315 3.002791 CCGTCATTGTGCTGTGATACTT 58.997 45.455 0.00 0.00 0.00 2.24
3278 3423 5.427157 TCATGTAGCCTTGGTTGGTATTCTA 59.573 40.000 0.00 0.00 0.00 2.10
3322 3467 8.099364 TGATTAACTAAGCTTTCTCTTTGGTG 57.901 34.615 3.20 0.00 0.00 4.17
3324 3469 4.439253 ACTAAGCTTTCTCTTTGGTGGT 57.561 40.909 3.20 0.00 0.00 4.16
3325 3470 4.390264 ACTAAGCTTTCTCTTTGGTGGTC 58.610 43.478 3.20 0.00 0.00 4.02
3326 3471 3.297134 AAGCTTTCTCTTTGGTGGTCA 57.703 42.857 0.00 0.00 0.00 4.02
3399 3558 8.138365 TGTCTCTGTTTACTGTTTATTGTCAC 57.862 34.615 0.00 0.00 0.00 3.67
3400 3559 7.985184 TGTCTCTGTTTACTGTTTATTGTCACT 59.015 33.333 0.00 0.00 0.00 3.41
3473 3632 3.256136 AGTCATCTACCGCATACTTAGCC 59.744 47.826 0.00 0.00 0.00 3.93
3499 3658 3.858503 GCTTTTGGACCTGCAGAATTGTC 60.859 47.826 17.39 13.63 0.00 3.18
3547 3706 4.541705 TGGATCTTCCAACAACAAGGAAA 58.458 39.130 0.00 0.00 45.00 3.13
3565 3724 5.495640 AGGAAACTTGCCATGAAAAACAAA 58.504 33.333 0.00 0.00 37.44 2.83
3655 3816 2.084546 GTTTCACAGTCTGGTATGCCC 58.915 52.381 4.53 0.00 0.00 5.36
3659 3820 1.278985 CACAGTCTGGTATGCCCTTGA 59.721 52.381 4.53 0.00 0.00 3.02
3720 3881 3.391296 TGAAGGCAGATAACCCCATAGTC 59.609 47.826 0.00 0.00 0.00 2.59
3890 4134 6.896969 AGTAGTACGTAAAATCGATAGGCTC 58.103 40.000 0.00 0.00 34.70 4.70
3929 4223 9.983804 GTGTATATTACTTTAGTTTGCTGGTTC 57.016 33.333 0.00 0.00 0.00 3.62
3931 4225 7.916914 ATATTACTTTAGTTTGCTGGTTCGT 57.083 32.000 0.00 0.00 0.00 3.85
3932 4226 5.662211 TTACTTTAGTTTGCTGGTTCGTC 57.338 39.130 0.00 0.00 0.00 4.20
3933 4227 3.537580 ACTTTAGTTTGCTGGTTCGTCA 58.462 40.909 0.00 0.00 0.00 4.35
3935 4229 4.396790 ACTTTAGTTTGCTGGTTCGTCAAA 59.603 37.500 0.00 0.00 0.00 2.69
3936 4230 4.966965 TTAGTTTGCTGGTTCGTCAAAA 57.033 36.364 0.00 0.00 32.36 2.44
3948 4618 7.358352 GCTGGTTCGTCAAAATAAACAATCTTG 60.358 37.037 0.00 0.00 0.00 3.02
3989 4659 3.562182 TGCTGGATCCACGATACTCTTA 58.438 45.455 11.44 0.00 0.00 2.10
3990 4660 3.958147 TGCTGGATCCACGATACTCTTAA 59.042 43.478 11.44 0.00 0.00 1.85
4001 4671 2.000429 TACTCTTAAAGGGCGTTCGC 58.000 50.000 8.75 8.75 0.00 4.70
4144 4822 4.614284 GTGATTCAACAGAAATCGTGCAAG 59.386 41.667 0.00 0.00 36.18 4.01
4195 4873 0.178903 AGGAGGAGCTGTGGTTACCA 60.179 55.000 0.00 0.00 0.00 3.25
4198 4912 0.034896 AGGAGCTGTGGTTACCAACG 59.965 55.000 5.33 0.80 34.18 4.10
4202 4916 1.346395 AGCTGTGGTTACCAACGATCA 59.654 47.619 5.33 0.00 34.18 2.92
4275 4989 3.511540 CCTGATTTCCTTTTTCCCCTGTC 59.488 47.826 0.00 0.00 0.00 3.51
4294 5008 1.203087 TCTTGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4297 5011 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
4300 5014 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4302 5016 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4306 5020 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
4307 5021 4.181578 CTCCGTTCCAAATTACTCGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4309 5023 4.390603 TCCGTTCCAAATTACTCGTCATTG 59.609 41.667 0.00 0.00 0.00 2.82
4312 5026 6.140110 CGTTCCAAATTACTCGTCATTGTTT 58.860 36.000 0.00 0.00 0.00 2.83
4313 5027 6.635239 CGTTCCAAATTACTCGTCATTGTTTT 59.365 34.615 0.00 0.00 0.00 2.43
4314 5028 7.799447 CGTTCCAAATTACTCGTCATTGTTTTA 59.201 33.333 0.00 0.00 0.00 1.52
4315 5029 9.113876 GTTCCAAATTACTCGTCATTGTTTTAG 57.886 33.333 0.00 0.00 0.00 1.85
4316 5030 8.385898 TCCAAATTACTCGTCATTGTTTTAGT 57.614 30.769 0.00 0.00 0.00 2.24
4317 5031 8.842280 TCCAAATTACTCGTCATTGTTTTAGTT 58.158 29.630 0.00 0.00 0.00 2.24
4318 5032 9.113876 CCAAATTACTCGTCATTGTTTTAGTTC 57.886 33.333 0.00 0.00 0.00 3.01
4325 5039 9.581099 ACTCGTCATTGTTTTAGTTCAAATTTT 57.419 25.926 0.00 0.00 0.00 1.82
4326 5040 9.833894 CTCGTCATTGTTTTAGTTCAAATTTTG 57.166 29.630 2.59 2.59 0.00 2.44
4327 5041 9.574458 TCGTCATTGTTTTAGTTCAAATTTTGA 57.426 25.926 7.74 7.74 38.04 2.69
4344 5119 9.833894 CAAATTTTGAACTAAAACAATGACGAG 57.166 29.630 2.88 0.00 40.80 4.18
4368 5145 4.957684 ATTTGGAACGGAGGGAGTATAG 57.042 45.455 0.00 0.00 0.00 1.31
4415 5192 5.956642 AGTAAACGCCAAAGTTCAAAAGAA 58.043 33.333 0.00 0.00 32.43 2.52
4416 5193 6.033966 AGTAAACGCCAAAGTTCAAAAGAAG 58.966 36.000 0.00 0.00 32.43 2.85
4417 5194 4.712122 AACGCCAAAGTTCAAAAGAAGA 57.288 36.364 0.00 0.00 0.00 2.87
4418 5195 4.712122 ACGCCAAAGTTCAAAAGAAGAA 57.288 36.364 0.00 0.00 0.00 2.52
4419 5196 4.421058 ACGCCAAAGTTCAAAAGAAGAAC 58.579 39.130 0.00 0.00 44.32 3.01
4420 5197 3.796717 CGCCAAAGTTCAAAAGAAGAACC 59.203 43.478 0.00 0.00 44.91 3.62
4421 5198 4.676723 CGCCAAAGTTCAAAAGAAGAACCA 60.677 41.667 0.00 0.00 44.91 3.67
4422 5199 4.805719 GCCAAAGTTCAAAAGAAGAACCAG 59.194 41.667 0.00 0.00 44.91 4.00
4423 5200 5.351458 CCAAAGTTCAAAAGAAGAACCAGG 58.649 41.667 0.00 0.00 44.91 4.45
4424 5201 4.655762 AAGTTCAAAAGAAGAACCAGGC 57.344 40.909 0.00 0.00 44.91 4.85
4425 5202 2.959030 AGTTCAAAAGAAGAACCAGGCC 59.041 45.455 0.00 0.00 44.91 5.19
4426 5203 2.959030 GTTCAAAAGAAGAACCAGGCCT 59.041 45.455 0.00 0.00 39.48 5.19
4427 5204 2.863809 TCAAAAGAAGAACCAGGCCTC 58.136 47.619 0.00 0.00 0.00 4.70
4428 5205 2.443255 TCAAAAGAAGAACCAGGCCTCT 59.557 45.455 0.00 0.00 0.00 3.69
4464 5241 4.496507 GCGGCTAAGGATGAGTGAAATTTC 60.497 45.833 11.41 11.41 0.00 2.17
4491 5268 6.291164 CGTTCTGTAAAAACGCTATCTAGAGC 60.291 42.308 0.00 0.00 42.40 4.09
4498 5275 0.243365 CGCTATCTAGAGCCAGGCAG 59.757 60.000 15.80 1.96 39.43 4.85
4499 5276 0.607620 GCTATCTAGAGCCAGGCAGG 59.392 60.000 15.80 0.14 36.38 4.85
4514 5291 2.359230 AGGCGCTGAAGGCTGAAC 60.359 61.111 7.64 0.00 45.75 3.18
4515 5292 2.669569 GGCGCTGAAGGCTGAACA 60.670 61.111 7.64 0.00 39.13 3.18
4516 5293 2.260869 GGCGCTGAAGGCTGAACAA 61.261 57.895 7.64 0.00 39.13 2.83
4528 5305 2.159254 GGCTGAACAAAGAACTTGCACA 60.159 45.455 0.00 0.00 38.75 4.57
4546 5323 3.057946 GCACATTCAACTGGTCTCTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
4621 5410 8.532186 TTTTTGGCATGTATGTAGTCCATATT 57.468 30.769 0.00 0.00 38.29 1.28
4622 5411 7.509141 TTTGGCATGTATGTAGTCCATATTG 57.491 36.000 0.00 0.00 38.29 1.90
4623 5412 6.432403 TGGCATGTATGTAGTCCATATTGA 57.568 37.500 0.00 0.00 38.29 2.57
4624 5413 6.836242 TGGCATGTATGTAGTCCATATTGAA 58.164 36.000 0.00 0.00 38.29 2.69
4625 5414 7.286313 TGGCATGTATGTAGTCCATATTGAAA 58.714 34.615 0.00 0.00 38.29 2.69
4626 5415 7.944000 TGGCATGTATGTAGTCCATATTGAAAT 59.056 33.333 0.00 0.00 38.29 2.17
4627 5416 9.448438 GGCATGTATGTAGTCCATATTGAAATA 57.552 33.333 0.00 0.00 38.29 1.40
4693 5483 6.799441 TGATATACACAACATCAACAAAACGC 59.201 34.615 0.00 0.00 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.225497 GCTAACCTCGCAAGCCAT 57.775 55.556 0.00 0.00 37.18 4.40
3 4 1.639298 CTGTGGCTAACCTCGCAAGC 61.639 60.000 0.00 0.00 36.63 4.01
4 5 1.021390 CCTGTGGCTAACCTCGCAAG 61.021 60.000 0.00 0.00 36.63 4.01
5 6 1.003839 CCTGTGGCTAACCTCGCAA 60.004 57.895 0.00 0.00 36.63 4.85
6 7 1.264749 ATCCTGTGGCTAACCTCGCA 61.265 55.000 0.00 0.00 36.63 5.10
7 8 0.750850 TATCCTGTGGCTAACCTCGC 59.249 55.000 0.00 0.00 36.63 5.03
8 9 2.307768 TCTATCCTGTGGCTAACCTCG 58.692 52.381 0.00 0.00 36.63 4.63
9 10 4.755266 TTTCTATCCTGTGGCTAACCTC 57.245 45.455 0.00 0.00 36.63 3.85
10 11 5.514500 TTTTTCTATCCTGTGGCTAACCT 57.486 39.130 0.00 0.00 36.63 3.50
11 12 7.502561 ACATATTTTTCTATCCTGTGGCTAACC 59.497 37.037 0.00 0.00 0.00 2.85
12 13 8.345565 CACATATTTTTCTATCCTGTGGCTAAC 58.654 37.037 0.00 0.00 31.29 2.34
13 14 7.013274 GCACATATTTTTCTATCCTGTGGCTAA 59.987 37.037 0.00 0.00 34.55 3.09
14 15 6.486657 GCACATATTTTTCTATCCTGTGGCTA 59.513 38.462 0.00 0.00 34.55 3.93
15 16 5.300286 GCACATATTTTTCTATCCTGTGGCT 59.700 40.000 0.00 0.00 34.55 4.75
16 17 5.067674 TGCACATATTTTTCTATCCTGTGGC 59.932 40.000 0.00 0.00 34.55 5.01
17 18 6.698008 TGCACATATTTTTCTATCCTGTGG 57.302 37.500 0.00 0.00 34.55 4.17
21 22 8.954350 GCAGATATGCACATATTTTTCTATCCT 58.046 33.333 7.61 0.00 34.36 3.24
22 23 8.954350 AGCAGATATGCACATATTTTTCTATCC 58.046 33.333 15.82 0.00 34.36 2.59
25 26 8.925700 CGTAGCAGATATGCACATATTTTTCTA 58.074 33.333 15.82 1.81 34.36 2.10
26 27 7.657354 TCGTAGCAGATATGCACATATTTTTCT 59.343 33.333 15.82 2.58 34.36 2.52
27 28 7.796838 TCGTAGCAGATATGCACATATTTTTC 58.203 34.615 15.82 0.00 34.36 2.29
28 29 7.728847 TCGTAGCAGATATGCACATATTTTT 57.271 32.000 15.82 0.00 34.36 1.94
29 30 7.442364 AGTTCGTAGCAGATATGCACATATTTT 59.558 33.333 15.82 0.00 34.36 1.82
30 31 6.931281 AGTTCGTAGCAGATATGCACATATTT 59.069 34.615 15.82 0.00 34.36 1.40
31 32 6.459066 AGTTCGTAGCAGATATGCACATATT 58.541 36.000 15.82 0.00 34.36 1.28
32 33 6.030548 AGTTCGTAGCAGATATGCACATAT 57.969 37.500 15.82 2.80 36.75 1.78
33 34 5.453567 AGTTCGTAGCAGATATGCACATA 57.546 39.130 15.82 0.00 37.25 2.29
34 35 4.327982 AGTTCGTAGCAGATATGCACAT 57.672 40.909 15.82 0.00 37.25 3.21
35 36 3.801114 AGTTCGTAGCAGATATGCACA 57.199 42.857 15.82 0.00 37.25 4.57
36 37 4.861210 AGTAGTTCGTAGCAGATATGCAC 58.139 43.478 15.82 9.63 37.25 4.57
37 38 5.507482 GGAAGTAGTTCGTAGCAGATATGCA 60.507 44.000 15.82 0.00 33.49 3.96
38 39 4.918583 GGAAGTAGTTCGTAGCAGATATGC 59.081 45.833 3.54 3.54 32.92 3.14
39 40 6.320494 AGGAAGTAGTTCGTAGCAGATATG 57.680 41.667 3.68 0.00 32.92 1.78
40 41 5.474189 GGAGGAAGTAGTTCGTAGCAGATAT 59.526 44.000 5.51 0.00 32.92 1.63
41 42 4.820716 GGAGGAAGTAGTTCGTAGCAGATA 59.179 45.833 5.51 0.00 32.92 1.98
42 43 3.633065 GGAGGAAGTAGTTCGTAGCAGAT 59.367 47.826 5.51 0.00 32.92 2.90
43 44 3.015327 GGAGGAAGTAGTTCGTAGCAGA 58.985 50.000 5.51 0.00 32.92 4.26
44 45 2.223294 CGGAGGAAGTAGTTCGTAGCAG 60.223 54.545 5.51 0.00 32.92 4.24
45 46 1.741706 CGGAGGAAGTAGTTCGTAGCA 59.258 52.381 5.51 0.00 32.92 3.49
46 47 1.742268 ACGGAGGAAGTAGTTCGTAGC 59.258 52.381 5.51 0.00 32.92 3.58
47 48 3.181502 GGAACGGAGGAAGTAGTTCGTAG 60.182 52.174 5.51 6.07 42.61 3.51
48 49 2.749621 GGAACGGAGGAAGTAGTTCGTA 59.250 50.000 5.51 0.00 42.61 3.43
49 50 1.543358 GGAACGGAGGAAGTAGTTCGT 59.457 52.381 5.20 5.20 42.61 3.85
50 51 1.817447 AGGAACGGAGGAAGTAGTTCG 59.183 52.381 4.23 0.00 42.61 3.95
51 52 5.397142 TTTAGGAACGGAGGAAGTAGTTC 57.603 43.478 1.31 1.31 41.40 3.01
52 53 5.247792 ACATTTAGGAACGGAGGAAGTAGTT 59.752 40.000 0.00 0.00 0.00 2.24
53 54 4.776308 ACATTTAGGAACGGAGGAAGTAGT 59.224 41.667 0.00 0.00 0.00 2.73
54 55 5.340439 ACATTTAGGAACGGAGGAAGTAG 57.660 43.478 0.00 0.00 0.00 2.57
55 56 6.438425 ACTTACATTTAGGAACGGAGGAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
56 57 5.247792 ACTTACATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
57 58 5.731591 ACTTACATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
58 59 5.482878 AGACTTACATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
59 60 5.021458 AGACTTACATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
60 61 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
61 62 6.092259 CCAAAGACTTACATTTAGGAACGGAG 59.908 42.308 0.00 0.00 0.00 4.63
62 63 5.935789 CCAAAGACTTACATTTAGGAACGGA 59.064 40.000 0.00 0.00 0.00 4.69
63 64 5.935789 TCCAAAGACTTACATTTAGGAACGG 59.064 40.000 0.00 0.00 0.00 4.44
64 65 6.872020 TCTCCAAAGACTTACATTTAGGAACG 59.128 38.462 0.00 0.00 0.00 3.95
65 66 8.095169 TCTCTCCAAAGACTTACATTTAGGAAC 58.905 37.037 0.00 0.00 0.00 3.62
66 67 8.202461 TCTCTCCAAAGACTTACATTTAGGAA 57.798 34.615 0.00 0.00 0.00 3.36
67 68 7.792364 TCTCTCCAAAGACTTACATTTAGGA 57.208 36.000 0.00 0.00 0.00 2.94
68 69 9.454859 AAATCTCTCCAAAGACTTACATTTAGG 57.545 33.333 0.00 0.00 0.00 2.69
71 72 8.787852 GTGAAATCTCTCCAAAGACTTACATTT 58.212 33.333 0.00 0.00 0.00 2.32
72 73 8.160106 AGTGAAATCTCTCCAAAGACTTACATT 58.840 33.333 0.00 0.00 0.00 2.71
73 74 7.684529 AGTGAAATCTCTCCAAAGACTTACAT 58.315 34.615 0.00 0.00 0.00 2.29
74 75 7.067496 AGTGAAATCTCTCCAAAGACTTACA 57.933 36.000 0.00 0.00 0.00 2.41
75 76 9.092876 CATAGTGAAATCTCTCCAAAGACTTAC 57.907 37.037 0.00 0.00 0.00 2.34
76 77 9.035890 TCATAGTGAAATCTCTCCAAAGACTTA 57.964 33.333 0.00 0.00 0.00 2.24
77 78 7.911651 TCATAGTGAAATCTCTCCAAAGACTT 58.088 34.615 0.00 0.00 0.00 3.01
78 79 7.487822 TCATAGTGAAATCTCTCCAAAGACT 57.512 36.000 0.00 0.00 0.00 3.24
79 80 7.065204 GGTTCATAGTGAAATCTCTCCAAAGAC 59.935 40.741 0.00 0.00 38.22 3.01
80 81 7.106239 GGTTCATAGTGAAATCTCTCCAAAGA 58.894 38.462 0.00 0.00 38.22 2.52
81 82 6.881065 TGGTTCATAGTGAAATCTCTCCAAAG 59.119 38.462 0.00 0.00 38.22 2.77
82 83 6.778821 TGGTTCATAGTGAAATCTCTCCAAA 58.221 36.000 0.00 0.00 38.22 3.28
83 84 6.373005 TGGTTCATAGTGAAATCTCTCCAA 57.627 37.500 0.00 0.00 38.22 3.53
84 85 6.566079 ATGGTTCATAGTGAAATCTCTCCA 57.434 37.500 0.00 0.00 38.22 3.86
85 86 9.646427 GTATATGGTTCATAGTGAAATCTCTCC 57.354 37.037 0.00 0.00 38.22 3.71
86 87 9.347934 CGTATATGGTTCATAGTGAAATCTCTC 57.652 37.037 0.00 0.00 38.22 3.20
87 88 8.307483 CCGTATATGGTTCATAGTGAAATCTCT 58.693 37.037 2.46 0.00 38.22 3.10
88 89 8.304596 TCCGTATATGGTTCATAGTGAAATCTC 58.695 37.037 10.85 0.00 38.22 2.75
89 90 8.190326 TCCGTATATGGTTCATAGTGAAATCT 57.810 34.615 10.85 0.00 38.22 2.40
90 91 7.063544 GCTCCGTATATGGTTCATAGTGAAATC 59.936 40.741 10.85 0.00 38.22 2.17
91 92 6.874134 GCTCCGTATATGGTTCATAGTGAAAT 59.126 38.462 10.85 0.00 38.22 2.17
92 93 6.183360 TGCTCCGTATATGGTTCATAGTGAAA 60.183 38.462 10.85 0.00 38.22 2.69
93 94 5.303333 TGCTCCGTATATGGTTCATAGTGAA 59.697 40.000 10.85 0.00 33.32 3.18
94 95 4.830600 TGCTCCGTATATGGTTCATAGTGA 59.169 41.667 10.85 0.00 29.42 3.41
95 96 5.134202 TGCTCCGTATATGGTTCATAGTG 57.866 43.478 10.85 0.00 29.42 2.74
96 97 5.801531 TTGCTCCGTATATGGTTCATAGT 57.198 39.130 10.85 0.00 29.42 2.12
97 98 7.387673 TCATTTTGCTCCGTATATGGTTCATAG 59.612 37.037 10.85 1.92 29.42 2.23
98 99 7.220740 TCATTTTGCTCCGTATATGGTTCATA 58.779 34.615 10.85 3.33 0.00 2.15
99 100 6.061441 TCATTTTGCTCCGTATATGGTTCAT 58.939 36.000 10.85 0.00 0.00 2.57
100 101 5.432645 TCATTTTGCTCCGTATATGGTTCA 58.567 37.500 10.85 7.24 0.00 3.18
101 102 6.371809 TTCATTTTGCTCCGTATATGGTTC 57.628 37.500 10.85 4.86 0.00 3.62
102 103 6.545666 TCATTCATTTTGCTCCGTATATGGTT 59.454 34.615 10.85 0.00 0.00 3.67
103 104 6.061441 TCATTCATTTTGCTCCGTATATGGT 58.939 36.000 10.85 0.00 0.00 3.55
104 105 6.558771 TCATTCATTTTGCTCCGTATATGG 57.441 37.500 4.41 4.41 0.00 2.74
105 106 8.509690 AGATTCATTCATTTTGCTCCGTATATG 58.490 33.333 0.00 0.00 0.00 1.78
106 107 8.627208 AGATTCATTCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
107 108 8.988934 GTAGATTCATTCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
108 109 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
109 110 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
110 111 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
111 112 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
112 113 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
113 114 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
114 115 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
120 121 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
121 122 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
122 123 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
123 124 9.624373 AGATGCATTTTAGAGTGTAGATTCATT 57.376 29.630 0.00 0.00 0.00 2.57
134 135 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
135 136 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
139 140 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
140 141 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
141 142 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
142 143 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
143 144 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
144 145 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
145 146 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
146 147 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
147 148 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
148 149 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
149 150 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
150 151 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
151 152 6.152154 CACTATGGACCACATACGGATGTATA 59.848 42.308 14.23 6.48 44.82 1.47
152 153 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
153 154 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
155 156 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
156 157 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
157 158 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
158 159 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
159 160 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
160 161 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
161 162 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
162 163 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
163 164 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
164 165 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
165 166 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
166 167 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
167 168 7.492994 GGTCTTTGTAGAGATTTCACTATGGAC 59.507 40.741 0.00 0.00 0.00 4.02
168 169 7.400339 AGGTCTTTGTAGAGATTTCACTATGGA 59.600 37.037 0.00 0.00 0.00 3.41
169 170 7.560368 AGGTCTTTGTAGAGATTTCACTATGG 58.440 38.462 0.00 0.00 0.00 2.74
193 194 6.947158 AGTACTCCCTCCGTTCCTAAATATAG 59.053 42.308 0.00 0.00 0.00 1.31
194 195 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
195 196 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
196 197 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
197 198 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
198 199 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
199 200 3.525199 AGTAGTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
200 201 3.118531 AGTAGTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
201 202 1.921748 AGTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
202 203 2.433662 AGTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
203 204 5.591877 TGATAAAGTAGTACTCCCTCCGTTC 59.408 44.000 2.58 0.00 0.00 3.95
204 205 5.513233 TGATAAAGTAGTACTCCCTCCGTT 58.487 41.667 2.58 0.00 0.00 4.44
205 206 5.104193 TCTGATAAAGTAGTACTCCCTCCGT 60.104 44.000 2.58 0.00 0.00 4.69
206 207 5.239087 GTCTGATAAAGTAGTACTCCCTCCG 59.761 48.000 2.58 0.00 0.00 4.63
207 208 6.127793 TGTCTGATAAAGTAGTACTCCCTCC 58.872 44.000 2.58 0.00 0.00 4.30
208 209 7.642082 TTGTCTGATAAAGTAGTACTCCCTC 57.358 40.000 2.58 1.64 0.00 4.30
209 210 8.431910 TTTTGTCTGATAAAGTAGTACTCCCT 57.568 34.615 2.58 0.00 0.00 4.20
210 211 8.933807 GTTTTTGTCTGATAAAGTAGTACTCCC 58.066 37.037 2.58 0.00 0.00 4.30
211 212 9.485206 TGTTTTTGTCTGATAAAGTAGTACTCC 57.515 33.333 2.58 0.00 0.00 3.85
216 217 9.561069 AGTGATGTTTTTGTCTGATAAAGTAGT 57.439 29.630 0.00 0.00 0.00 2.73
229 230 6.457799 GGTTGTTCGTCTAGTGATGTTTTTGT 60.458 38.462 0.00 0.00 0.00 2.83
339 341 1.242989 TAAAATTGGAGTGCTGCGCA 58.757 45.000 10.98 10.98 35.60 6.09
343 345 7.327761 CAGATTCTGTTTAAAATTGGAGTGCTG 59.672 37.037 5.46 0.00 0.00 4.41
348 350 9.748708 TTTGTCAGATTCTGTTTAAAATTGGAG 57.251 29.630 13.23 0.00 32.61 3.86
362 364 5.476945 GGGTTTGTGGTATTTGTCAGATTCT 59.523 40.000 0.00 0.00 0.00 2.40
427 429 2.189521 GGTGATTCGTCCGGCCAT 59.810 61.111 2.24 0.00 0.00 4.40
473 475 0.376852 TATGTTTTGCATCCGAGCGC 59.623 50.000 0.00 0.00 38.94 5.92
474 476 1.268032 GGTATGTTTTGCATCCGAGCG 60.268 52.381 0.00 0.00 38.94 5.03
475 477 1.742831 TGGTATGTTTTGCATCCGAGC 59.257 47.619 0.00 0.00 38.94 5.03
477 479 2.088423 GGTGGTATGTTTTGCATCCGA 58.912 47.619 0.00 0.00 38.94 4.55
529 531 0.371301 CGTCTCGTCGATTCGGTGTA 59.629 55.000 6.18 0.00 0.00 2.90
844 858 2.206750 CAAAAGAGTCGTCCGGTTTGA 58.793 47.619 0.00 0.00 0.00 2.69
847 861 0.250166 CCCAAAAGAGTCGTCCGGTT 60.250 55.000 0.00 0.00 0.00 4.44
849 863 2.033194 GCCCAAAAGAGTCGTCCGG 61.033 63.158 0.00 0.00 0.00 5.14
929 943 0.685660 GTCGAGTTGGGGAAGAACCT 59.314 55.000 0.00 0.00 38.98 3.50
969 984 1.220477 GCTCCTCTGCTCCAGGAAC 59.780 63.158 0.00 0.00 39.69 3.62
1063 1078 2.801421 GAGGCGATCGTGCAGAGA 59.199 61.111 17.81 0.00 36.28 3.10
1436 1451 1.305381 AGTAGCAGCTTCTCGGGGT 60.305 57.895 0.00 0.00 0.00 4.95
1474 1489 3.112075 CAACACGATGTCCGCGCT 61.112 61.111 5.56 0.00 43.32 5.92
1562 1577 1.456518 CAGCCATCCTCCTCCTCGA 60.457 63.158 0.00 0.00 0.00 4.04
1564 1579 2.146061 CCCAGCCATCCTCCTCCTC 61.146 68.421 0.00 0.00 0.00 3.71
1618 1633 1.608717 ATCTCGAACGCCCTGAAGCT 61.609 55.000 0.00 0.00 0.00 3.74
1623 1638 1.002366 CTTCAATCTCGAACGCCCTG 58.998 55.000 0.00 0.00 0.00 4.45
1645 1660 1.746615 CTTCACCACCGCCATCCAG 60.747 63.158 0.00 0.00 0.00 3.86
1653 1668 1.600485 GGTAACAACACTTCACCACCG 59.400 52.381 0.00 0.00 0.00 4.94
1688 1703 3.775654 CCTCCACCTCCTCCACGC 61.776 72.222 0.00 0.00 0.00 5.34
1692 1707 2.041405 CCCTCCTCCACCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
1727 1742 0.673985 GAAGTCAGCAAACCAACCCC 59.326 55.000 0.00 0.00 0.00 4.95
1797 1815 5.243954 ACCTGATACTATCGCAATAAGAGCA 59.756 40.000 0.00 0.00 0.00 4.26
1833 1851 2.128226 ATCAGCTTCCCCACCCCT 59.872 61.111 0.00 0.00 0.00 4.79
1871 1889 2.116125 ACTTGAACCTGGCCCTGC 59.884 61.111 0.00 0.00 0.00 4.85
1927 1945 9.793259 ACACTCTTCTAGGTTGAAAATCAAATA 57.207 29.630 0.00 0.00 38.22 1.40
2117 2137 8.800332 GGCAATGGATAATATGTTCTTCTGAAT 58.200 33.333 0.00 0.00 34.40 2.57
2119 2139 7.289310 TGGCAATGGATAATATGTTCTTCTGA 58.711 34.615 0.00 0.00 0.00 3.27
2120 2140 7.514784 TGGCAATGGATAATATGTTCTTCTG 57.485 36.000 0.00 0.00 0.00 3.02
2123 2145 7.727186 ACTGATGGCAATGGATAATATGTTCTT 59.273 33.333 0.00 0.00 0.00 2.52
2137 2162 2.559668 ACAGGTTTCACTGATGGCAATG 59.440 45.455 0.00 0.00 40.97 2.82
2143 2168 5.756195 TGAGAAAACAGGTTTCACTGATG 57.244 39.130 13.57 0.00 46.98 3.07
2146 2171 6.632171 GTTTTGAGAAAACAGGTTTCACTG 57.368 37.500 13.57 0.00 46.98 3.66
2161 2186 5.871396 AGTCCTCTACTTGTGTTTTGAGA 57.129 39.130 0.00 0.00 33.35 3.27
2162 2187 7.155328 ACATAGTCCTCTACTTGTGTTTTGAG 58.845 38.462 0.00 0.00 39.80 3.02
2188 2214 3.754965 AGATTTACAGCTCTTGTTGGCA 58.245 40.909 0.00 0.00 41.29 4.92
2225 2251 9.884465 GCAAGAAAGTATGAATACAATACATCC 57.116 33.333 3.43 0.00 35.74 3.51
2228 2254 8.892723 CCTGCAAGAAAGTATGAATACAATACA 58.107 33.333 3.43 0.00 34.07 2.29
2229 2255 7.857885 GCCTGCAAGAAAGTATGAATACAATAC 59.142 37.037 3.43 0.00 34.07 1.89
2230 2256 7.254761 CGCCTGCAAGAAAGTATGAATACAATA 60.255 37.037 3.43 0.00 34.07 1.90
2231 2257 6.458751 CGCCTGCAAGAAAGTATGAATACAAT 60.459 38.462 3.43 0.00 34.07 2.71
2232 2258 5.163764 CGCCTGCAAGAAAGTATGAATACAA 60.164 40.000 3.43 0.00 34.07 2.41
2289 2315 2.852075 TCCACCGCTTTCCCCAGT 60.852 61.111 0.00 0.00 0.00 4.00
2301 2327 2.825861 TACACTTCTTTCCGTCCACC 57.174 50.000 0.00 0.00 0.00 4.61
2373 2399 1.377333 GGTTTTCTCCTCTGGCCCG 60.377 63.158 0.00 0.00 0.00 6.13
2420 2446 9.950680 ATGAAATATAAAGGTTTTATGCTCACG 57.049 29.630 4.71 0.00 0.00 4.35
2445 2545 8.456124 TGGAGAATAAAGGCCCATTAGAATTAT 58.544 33.333 0.00 0.00 0.00 1.28
2508 2610 9.227777 GTTACATTAACTTGACCAGATAAAGGT 57.772 33.333 0.00 0.00 37.62 3.50
2548 2650 7.473511 GCCATTAGTGTTATACTCCCTCTGATT 60.474 40.741 0.00 0.00 40.89 2.57
2604 2721 1.839424 ACAAAGGCAGGCTATGGAAC 58.161 50.000 0.00 0.00 0.00 3.62
2627 2745 7.676947 AGAAACTACCAAGTAAATCTGCTGTA 58.323 34.615 0.00 0.00 33.75 2.74
2628 2746 6.534634 AGAAACTACCAAGTAAATCTGCTGT 58.465 36.000 0.00 0.00 33.75 4.40
2690 2808 5.449304 CGCACTACAGTTTTTCCCTTAAAG 58.551 41.667 0.00 0.00 0.00 1.85
2703 2822 2.906354 GGATCAATTCCGCACTACAGT 58.094 47.619 0.00 0.00 33.93 3.55
2713 2832 3.507233 TGCAAAGTGTCTGGATCAATTCC 59.493 43.478 0.00 0.00 45.69 3.01
2716 2835 4.778534 CTTGCAAAGTGTCTGGATCAAT 57.221 40.909 0.00 0.00 39.70 2.57
2761 2880 3.519107 TCAGCAAATATCTCTCCCACACA 59.481 43.478 0.00 0.00 0.00 3.72
2765 2884 4.842531 TGTTCAGCAAATATCTCTCCCA 57.157 40.909 0.00 0.00 0.00 4.37
2767 2886 7.040823 CCCTTTATGTTCAGCAAATATCTCTCC 60.041 40.741 0.00 0.00 0.00 3.71
2880 3004 7.948357 TCTAAGCAAGTGTAACAGACTAAAGA 58.052 34.615 0.00 0.00 41.43 2.52
2884 3008 7.539436 CATCTCTAAGCAAGTGTAACAGACTA 58.461 38.462 0.00 0.00 41.43 2.59
2885 3009 6.393990 CATCTCTAAGCAAGTGTAACAGACT 58.606 40.000 0.00 0.00 41.43 3.24
2896 3020 6.149142 ACTTTTCTTCAGCATCTCTAAGCAAG 59.851 38.462 0.00 0.00 0.00 4.01
2905 3029 7.283127 TGAAGTTAACACTTTTCTTCAGCATCT 59.717 33.333 8.61 0.00 43.79 2.90
2998 3122 4.694339 AGAAAACAGTGTAAGAAGCGAGT 58.306 39.130 0.00 0.00 0.00 4.18
3001 3125 4.035208 ACCAAGAAAACAGTGTAAGAAGCG 59.965 41.667 0.00 0.00 0.00 4.68
3097 3221 9.116067 TGTAGGGTTTCACAATGCTATTTATAC 57.884 33.333 0.00 0.00 0.00 1.47
3132 3264 5.836705 TGAAATGGAGAATGGAAATACCCA 58.163 37.500 0.00 0.00 41.05 4.51
3133 3265 6.790232 TTGAAATGGAGAATGGAAATACCC 57.210 37.500 0.00 0.00 38.00 3.69
3180 3315 6.114187 ACACACTGAACATATCCTTCTTCA 57.886 37.500 0.00 0.00 0.00 3.02
3278 3423 3.554934 TCAACAAGCCAACAATGAGACT 58.445 40.909 0.00 0.00 0.00 3.24
3322 3467 6.088824 GCTATATGCTGCATATTTGTTGACC 58.911 40.000 32.84 13.80 38.00 4.02
3324 3469 6.880942 TGCTATATGCTGCATATTTGTTGA 57.119 33.333 32.84 17.25 43.37 3.18
3364 3514 9.561069 AACAGTAAACAGAGACATACAATTTCT 57.439 29.630 0.00 0.00 0.00 2.52
3400 3559 9.800433 CCATTCACATGCATAAAATTACTGTAA 57.200 29.630 0.00 2.26 0.00 2.41
3473 3632 0.313043 CTGCAGGTCCAAAAGCACTG 59.687 55.000 5.57 0.00 32.87 3.66
3499 3658 0.321122 GTGCTGAAGGACTGTCTGGG 60.321 60.000 7.85 0.00 33.32 4.45
3547 3706 5.244755 ACAACTTTGTTTTTCATGGCAAGT 58.755 33.333 0.00 0.00 38.47 3.16
3565 3724 3.697542 GGTCACCTGTACCAAAAACAACT 59.302 43.478 0.00 0.00 36.96 3.16
3640 3799 1.656587 TCAAGGGCATACCAGACTGT 58.343 50.000 0.93 0.00 43.89 3.55
3641 3800 2.171237 TCATCAAGGGCATACCAGACTG 59.829 50.000 0.00 0.00 43.89 3.51
3655 3816 1.931841 CTGTGCTCGATGGTCATCAAG 59.068 52.381 11.00 3.49 37.69 3.02
3659 3820 0.176680 GGTCTGTGCTCGATGGTCAT 59.823 55.000 0.00 0.00 0.00 3.06
3868 4032 6.866010 TGAGCCTATCGATTTTACGTACTA 57.134 37.500 1.71 0.00 34.70 1.82
3869 4033 5.762825 TGAGCCTATCGATTTTACGTACT 57.237 39.130 1.71 0.00 34.70 2.73
3870 4034 6.254157 TGTTTGAGCCTATCGATTTTACGTAC 59.746 38.462 1.71 0.00 34.70 3.67
3871 4035 6.331845 TGTTTGAGCCTATCGATTTTACGTA 58.668 36.000 1.71 0.00 34.70 3.57
3872 4036 5.172934 TGTTTGAGCCTATCGATTTTACGT 58.827 37.500 1.71 0.00 34.70 3.57
3873 4037 5.291128 ACTGTTTGAGCCTATCGATTTTACG 59.709 40.000 1.71 0.00 0.00 3.18
3881 4125 3.308053 CACATCACTGTTTGAGCCTATCG 59.692 47.826 0.00 0.00 37.77 2.92
3931 4225 7.021196 GCTAGCGTCAAGATTGTTTATTTTGA 58.979 34.615 0.00 0.00 35.61 2.69
3932 4226 7.023575 AGCTAGCGTCAAGATTGTTTATTTTG 58.976 34.615 9.55 0.00 31.34 2.44
3933 4227 7.145932 AGCTAGCGTCAAGATTGTTTATTTT 57.854 32.000 9.55 0.00 0.00 1.82
3935 4229 6.183360 GGAAGCTAGCGTCAAGATTGTTTATT 60.183 38.462 28.07 3.87 0.00 1.40
3936 4230 5.294552 GGAAGCTAGCGTCAAGATTGTTTAT 59.705 40.000 28.07 0.00 0.00 1.40
3948 4618 1.805945 CCACGTGGAAGCTAGCGTC 60.806 63.158 31.31 20.84 37.39 5.19
4001 4671 0.103208 ATAGAAGTTCGAGCCCGCAG 59.897 55.000 0.00 0.00 35.37 5.18
4007 4677 3.585862 TGTTCCACATAGAAGTTCGAGC 58.414 45.455 0.00 0.00 0.00 5.03
4010 4680 3.935203 AGCATGTTCCACATAGAAGTTCG 59.065 43.478 0.00 0.00 36.53 3.95
4011 4681 6.017605 CCATAGCATGTTCCACATAGAAGTTC 60.018 42.308 0.00 0.00 36.53 3.01
4012 4682 5.824624 CCATAGCATGTTCCACATAGAAGTT 59.175 40.000 0.00 0.00 36.53 2.66
4013 4683 5.130975 TCCATAGCATGTTCCACATAGAAGT 59.869 40.000 0.00 0.00 36.53 3.01
4079 4757 3.752412 TTTCAGATCATTCGCAAGCTG 57.248 42.857 0.00 0.00 37.18 4.24
4144 4822 2.496899 TCTGAGGGGTTCAAGATTGC 57.503 50.000 0.00 0.00 34.81 3.56
4195 4873 2.228822 GGGACACAATGCTTTGATCGTT 59.771 45.455 18.35 0.00 36.64 3.85
4198 4912 1.133025 CCGGGACACAATGCTTTGATC 59.867 52.381 18.35 13.89 36.64 2.92
4202 4916 1.247567 CTTCCGGGACACAATGCTTT 58.752 50.000 0.00 0.00 0.00 3.51
4275 4989 1.263356 TGGAACGGAGGGAGTACAAG 58.737 55.000 0.00 0.00 0.00 3.16
4300 5014 9.833894 CAAAATTTGAACTAAAACAATGACGAG 57.166 29.630 0.00 0.00 0.00 4.18
4317 5031 9.574458 TCGTCATTGTTTTAGTTCAAAATTTGA 57.426 25.926 4.03 4.03 38.36 2.69
4318 5032 9.833894 CTCGTCATTGTTTTAGTTCAAAATTTG 57.166 29.630 0.00 0.00 38.36 2.32
4325 5039 9.658475 CAAATTACTCGTCATTGTTTTAGTTCA 57.342 29.630 0.00 0.00 0.00 3.18
4326 5040 9.113876 CCAAATTACTCGTCATTGTTTTAGTTC 57.886 33.333 0.00 0.00 0.00 3.01
4327 5041 8.842280 TCCAAATTACTCGTCATTGTTTTAGTT 58.158 29.630 0.00 0.00 0.00 2.24
4328 5042 8.385898 TCCAAATTACTCGTCATTGTTTTAGT 57.614 30.769 0.00 0.00 0.00 2.24
4330 5044 7.799447 CGTTCCAAATTACTCGTCATTGTTTTA 59.201 33.333 0.00 0.00 0.00 1.52
4332 5046 6.140110 CGTTCCAAATTACTCGTCATTGTTT 58.860 36.000 0.00 0.00 0.00 2.83
4335 5049 4.390603 TCCGTTCCAAATTACTCGTCATTG 59.609 41.667 0.00 0.00 0.00 2.82
4338 5113 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
4342 5117 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4344 5119 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4347 5122 3.071167 GCTATACTCCCTCCGTTCCAAAT 59.929 47.826 0.00 0.00 0.00 2.32
4387 5164 9.620660 CTTTTGAACTTTGGCGTTTACTTATAT 57.379 29.630 0.00 0.00 0.00 0.86
4408 5185 2.868899 AGAGGCCTGGTTCTTCTTTTG 58.131 47.619 12.00 0.00 0.00 2.44
4415 5192 2.327325 TGTTCTAGAGGCCTGGTTCT 57.673 50.000 12.00 3.03 0.00 3.01
4416 5193 2.355209 CCTTGTTCTAGAGGCCTGGTTC 60.355 54.545 12.00 0.00 0.00 3.62
4417 5194 1.630878 CCTTGTTCTAGAGGCCTGGTT 59.369 52.381 12.00 0.00 0.00 3.67
4418 5195 1.280457 CCTTGTTCTAGAGGCCTGGT 58.720 55.000 12.00 0.00 0.00 4.00
4424 5201 2.167861 GCGCGCCTTGTTCTAGAGG 61.168 63.158 23.24 0.00 36.09 3.69
4425 5202 2.508891 CGCGCGCCTTGTTCTAGAG 61.509 63.158 27.72 2.11 0.00 2.43
4426 5203 2.506217 CGCGCGCCTTGTTCTAGA 60.506 61.111 27.72 0.00 0.00 2.43
4427 5204 3.554692 CCGCGCGCCTTGTTCTAG 61.555 66.667 27.36 7.77 0.00 2.43
4501 5278 2.620585 AGTTCTTTGTTCAGCCTTCAGC 59.379 45.455 0.00 0.00 44.25 4.26
4502 5279 4.604976 CAAGTTCTTTGTTCAGCCTTCAG 58.395 43.478 0.00 0.00 31.92 3.02
4503 5280 3.181487 GCAAGTTCTTTGTTCAGCCTTCA 60.181 43.478 0.00 0.00 39.08 3.02
4504 5281 3.181487 TGCAAGTTCTTTGTTCAGCCTTC 60.181 43.478 0.00 0.00 39.08 3.46
4505 5282 2.760092 TGCAAGTTCTTTGTTCAGCCTT 59.240 40.909 0.00 0.00 39.08 4.35
4506 5283 2.099756 GTGCAAGTTCTTTGTTCAGCCT 59.900 45.455 0.00 0.00 39.08 4.58
4507 5284 2.159254 TGTGCAAGTTCTTTGTTCAGCC 60.159 45.455 0.00 0.00 39.08 4.85
4508 5285 3.149436 TGTGCAAGTTCTTTGTTCAGC 57.851 42.857 0.00 0.00 39.08 4.26
4509 5286 5.342433 TGAATGTGCAAGTTCTTTGTTCAG 58.658 37.500 12.06 0.00 39.08 3.02
4510 5287 5.321959 TGAATGTGCAAGTTCTTTGTTCA 57.678 34.783 12.06 0.00 39.08 3.18
4511 5288 5.807011 AGTTGAATGTGCAAGTTCTTTGTTC 59.193 36.000 12.06 0.00 39.08 3.18
4512 5289 5.577945 CAGTTGAATGTGCAAGTTCTTTGTT 59.422 36.000 12.06 0.00 39.08 2.83
4513 5290 5.104374 CAGTTGAATGTGCAAGTTCTTTGT 58.896 37.500 12.06 0.00 39.08 2.83
4514 5291 4.505191 CCAGTTGAATGTGCAAGTTCTTTG 59.495 41.667 12.06 8.23 39.88 2.77
4515 5292 4.160252 ACCAGTTGAATGTGCAAGTTCTTT 59.840 37.500 12.06 0.00 29.28 2.52
4516 5293 3.701040 ACCAGTTGAATGTGCAAGTTCTT 59.299 39.130 12.06 0.00 29.28 2.52
4528 5305 5.893824 AGTTTTGGAAAGAGACCAGTTGAAT 59.106 36.000 0.00 0.00 38.70 2.57
4546 5323 8.154649 AGTACTAAATCCAGACAACAGTTTTG 57.845 34.615 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.