Multiple sequence alignment - TraesCS1D01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G173200 chr1D 100.000 2573 0 0 1 2573 247133677 247131105 0.000000e+00 4752.0
1 TraesCS1D01G173200 chr1D 90.577 520 41 5 2011 2524 162067598 162068115 0.000000e+00 682.0
2 TraesCS1D01G173200 chr1D 92.216 334 18 3 1 328 355673705 355674036 1.390000e-127 466.0
3 TraesCS1D01G173200 chr1D 85.915 71 8 2 1504 1573 247122883 247122814 9.870000e-10 75.0
4 TraesCS1D01G173200 chr1D 85.915 71 6 3 1505 1573 246679506 246679438 3.550000e-09 73.1
5 TraesCS1D01G173200 chr1D 85.714 70 8 2 1505 1573 246970194 246970126 3.550000e-09 73.1
6 TraesCS1D01G173200 chr1A 93.445 1373 59 8 670 2012 300567200 300568571 0.000000e+00 2008.0
7 TraesCS1D01G173200 chr1A 86.111 72 8 2 1504 1574 300673099 300673169 2.750000e-10 76.8
8 TraesCS1D01G173200 chr1A 97.674 43 1 0 2527 2569 300568582 300568624 9.870000e-10 75.0
9 TraesCS1D01G173200 chr1B 92.175 1163 49 9 771 1907 330838959 330840105 0.000000e+00 1605.0
10 TraesCS1D01G173200 chr1B 88.566 516 53 4 2015 2524 45257779 45258294 2.810000e-174 621.0
11 TraesCS1D01G173200 chr1B 79.845 516 93 8 2015 2524 280764481 280763971 1.450000e-97 366.0
12 TraesCS1D01G173200 chr1B 84.483 232 22 5 370 596 330838491 330838713 1.550000e-52 217.0
13 TraesCS1D01G173200 chr1B 87.417 151 18 1 520 670 330838739 330838888 3.400000e-39 172.0
14 TraesCS1D01G173200 chr1B 80.172 116 22 1 558 672 646068854 646068739 4.560000e-13 86.1
15 TraesCS1D01G173200 chr1B 85.915 71 6 3 1505 1573 331363956 331364024 3.550000e-09 73.1
16 TraesCS1D01G173200 chr7D 92.145 331 22 3 1 327 628542465 628542135 5.010000e-127 464.0
17 TraesCS1D01G173200 chr7D 91.843 331 17 8 1 324 126659042 126658715 1.090000e-123 453.0
18 TraesCS1D01G173200 chr7D 91.385 325 17 4 1 321 80511026 80511343 3.930000e-118 435.0
19 TraesCS1D01G173200 chr7D 80.658 517 86 9 2016 2524 25282661 25283171 3.100000e-104 388.0
20 TraesCS1D01G173200 chr7D 81.277 235 33 9 2015 2241 182934999 182934768 2.030000e-41 180.0
21 TraesCS1D01G173200 chr7D 80.469 128 19 6 538 660 266887250 266887124 2.730000e-15 93.5
22 TraesCS1D01G173200 chr2D 92.192 333 18 6 1 325 648277694 648278026 5.010000e-127 464.0
23 TraesCS1D01G173200 chr2D 91.077 325 17 6 1 322 13653795 13653480 1.830000e-116 429.0
24 TraesCS1D01G173200 chr2D 79.381 194 26 9 480 665 101690536 101690723 9.670000e-25 124.0
25 TraesCS1D01G173200 chr2D 86.408 103 11 3 553 653 554304620 554304721 2.710000e-20 110.0
26 TraesCS1D01G173200 chr3D 92.145 331 20 4 1 329 369417971 369417645 1.800000e-126 462.0
27 TraesCS1D01G173200 chr3D 90.691 333 20 7 1 329 508100951 508101276 1.410000e-117 433.0
28 TraesCS1D01G173200 chr3D 81.118 519 89 7 2009 2521 118255690 118256205 8.570000e-110 407.0
29 TraesCS1D01G173200 chr3D 81.967 122 15 6 518 633 3992239 3992119 2.110000e-16 97.1
30 TraesCS1D01G173200 chr5D 90.909 330 19 4 1 324 450616108 450615784 1.410000e-117 433.0
31 TraesCS1D01G173200 chr5D 81.081 518 91 5 2011 2524 276318437 276317923 8.570000e-110 407.0
32 TraesCS1D01G173200 chr6D 78.740 381 76 3 2015 2392 15716119 15715741 1.530000e-62 250.0
33 TraesCS1D01G173200 chr6D 81.955 133 15 7 491 615 10062361 10062492 1.260000e-18 104.0
34 TraesCS1D01G173200 chr3B 83.422 187 20 8 2015 2194 104818188 104818006 2.050000e-36 163.0
35 TraesCS1D01G173200 chr3B 82.979 94 16 0 1480 1573 59046577 59046670 4.560000e-13 86.1
36 TraesCS1D01G173200 chr4B 88.618 123 10 2 1408 1528 546649048 546648928 2.060000e-31 147.0
37 TraesCS1D01G173200 chr6B 81.290 155 19 9 520 667 533519874 533520025 1.620000e-22 117.0
38 TraesCS1D01G173200 chr5A 85.714 98 13 1 556 653 681080424 681080520 4.530000e-18 102.0
39 TraesCS1D01G173200 chr5A 85.714 98 13 1 556 653 681151911 681152007 4.530000e-18 102.0
40 TraesCS1D01G173200 chr3A 83.146 89 15 0 1480 1568 46844549 46844637 5.900000e-12 82.4
41 TraesCS1D01G173200 chr3A 79.825 114 18 5 553 663 1932951 1933062 7.630000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G173200 chr1D 247131105 247133677 2572 True 4752.000000 4752 100.0000 1 2573 1 chr1D.!!$R4 2572
1 TraesCS1D01G173200 chr1D 162067598 162068115 517 False 682.000000 682 90.5770 2011 2524 1 chr1D.!!$F1 513
2 TraesCS1D01G173200 chr1A 300567200 300568624 1424 False 1041.500000 2008 95.5595 670 2569 2 chr1A.!!$F2 1899
3 TraesCS1D01G173200 chr1B 330838491 330840105 1614 False 664.666667 1605 88.0250 370 1907 3 chr1B.!!$F3 1537
4 TraesCS1D01G173200 chr1B 45257779 45258294 515 False 621.000000 621 88.5660 2015 2524 1 chr1B.!!$F1 509
5 TraesCS1D01G173200 chr1B 280763971 280764481 510 True 366.000000 366 79.8450 2015 2524 1 chr1B.!!$R1 509
6 TraesCS1D01G173200 chr7D 25282661 25283171 510 False 388.000000 388 80.6580 2016 2524 1 chr7D.!!$F1 508
7 TraesCS1D01G173200 chr3D 118255690 118256205 515 False 407.000000 407 81.1180 2009 2521 1 chr3D.!!$F1 512
8 TraesCS1D01G173200 chr5D 276317923 276318437 514 True 407.000000 407 81.0810 2011 2524 1 chr5D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.030235 CACAACCGTGTCTCTCGTGA 59.970 55.0 0.00 0.0 38.41 4.35 F
131 132 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.0 6.32 0.0 41.83 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1198 1.001248 TAGGGGAAGGGTCGTGAGG 59.999 63.158 0.0 0.0 0.0 3.86 R
2115 2294 1.139853 CTCATGTTGTCCCCTAGAGCC 59.860 57.143 0.0 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.506096 CGGCCGTGACTCTCGCTA 61.506 66.667 19.50 0.00 0.00 4.26
22 23 2.882876 GGCCGTGACTCTCGCTAA 59.117 61.111 0.00 0.00 0.00 3.09
23 24 1.214589 GGCCGTGACTCTCGCTAAA 59.785 57.895 0.00 0.00 0.00 1.85
24 25 0.802607 GGCCGTGACTCTCGCTAAAG 60.803 60.000 0.00 0.00 0.00 1.85
25 26 1.414527 GCCGTGACTCTCGCTAAAGC 61.415 60.000 0.00 0.00 37.78 3.51
26 27 0.109272 CCGTGACTCTCGCTAAAGCA 60.109 55.000 2.44 0.00 42.21 3.91
27 28 0.985549 CGTGACTCTCGCTAAAGCAC 59.014 55.000 2.44 0.00 42.21 4.40
28 29 1.666023 CGTGACTCTCGCTAAAGCACA 60.666 52.381 2.44 0.00 42.21 4.57
29 30 2.404215 GTGACTCTCGCTAAAGCACAA 58.596 47.619 2.44 0.00 42.21 3.33
30 31 2.155924 GTGACTCTCGCTAAAGCACAAC 59.844 50.000 2.44 0.00 42.21 3.32
31 32 1.727335 GACTCTCGCTAAAGCACAACC 59.273 52.381 2.44 0.00 42.21 3.77
32 33 0.716108 CTCTCGCTAAAGCACAACCG 59.284 55.000 2.44 0.00 42.21 4.44
33 34 0.032952 TCTCGCTAAAGCACAACCGT 59.967 50.000 2.44 0.00 42.21 4.83
34 35 0.163788 CTCGCTAAAGCACAACCGTG 59.836 55.000 2.44 0.00 46.56 4.94
35 36 0.531090 TCGCTAAAGCACAACCGTGT 60.531 50.000 2.44 0.00 45.50 4.49
36 37 0.110823 CGCTAAAGCACAACCGTGTC 60.111 55.000 2.44 0.00 45.50 3.67
37 38 1.226746 GCTAAAGCACAACCGTGTCT 58.773 50.000 0.00 0.00 45.50 3.41
38 39 1.194772 GCTAAAGCACAACCGTGTCTC 59.805 52.381 0.00 0.00 45.50 3.36
39 40 2.755650 CTAAAGCACAACCGTGTCTCT 58.244 47.619 0.00 0.00 45.50 3.10
40 41 1.583054 AAAGCACAACCGTGTCTCTC 58.417 50.000 0.00 0.00 45.50 3.20
41 42 0.597637 AAGCACAACCGTGTCTCTCG 60.598 55.000 0.00 0.00 45.50 4.04
42 43 1.299926 GCACAACCGTGTCTCTCGT 60.300 57.895 0.00 0.00 45.50 4.18
43 44 1.548973 GCACAACCGTGTCTCTCGTG 61.549 60.000 0.00 0.00 45.50 4.35
44 45 0.030235 CACAACCGTGTCTCTCGTGA 59.970 55.000 0.00 0.00 38.41 4.35
45 46 0.742505 ACAACCGTGTCTCTCGTGAA 59.257 50.000 0.00 0.00 29.49 3.18
46 47 1.135527 ACAACCGTGTCTCTCGTGAAA 59.864 47.619 0.00 0.00 29.49 2.69
47 48 2.198406 CAACCGTGTCTCTCGTGAAAA 58.802 47.619 0.00 0.00 0.00 2.29
48 49 2.589798 ACCGTGTCTCTCGTGAAAAA 57.410 45.000 0.00 0.00 0.00 1.94
122 123 3.612472 TTTTTGGTCGAAACGCTAAGG 57.388 42.857 0.00 0.00 0.00 2.69
123 124 2.529780 TTTGGTCGAAACGCTAAGGA 57.470 45.000 0.00 0.00 0.00 3.36
124 125 2.529780 TTGGTCGAAACGCTAAGGAA 57.470 45.000 0.00 0.00 0.00 3.36
125 126 2.074547 TGGTCGAAACGCTAAGGAAG 57.925 50.000 0.00 0.00 0.00 3.46
126 127 1.614903 TGGTCGAAACGCTAAGGAAGA 59.385 47.619 0.00 0.00 0.00 2.87
127 128 1.991264 GGTCGAAACGCTAAGGAAGAC 59.009 52.381 0.00 0.00 0.00 3.01
128 129 1.991264 GTCGAAACGCTAAGGAAGACC 59.009 52.381 0.00 0.00 0.00 3.85
129 130 0.989890 CGAAACGCTAAGGAAGACCG 59.010 55.000 0.00 0.00 41.83 4.79
130 131 1.356938 GAAACGCTAAGGAAGACCGG 58.643 55.000 0.00 0.00 41.83 5.28
131 132 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.000 6.32 0.00 41.83 5.73
132 133 1.896122 AACGCTAAGGAAGACCGGGG 61.896 60.000 6.32 0.00 41.83 5.73
133 134 2.056223 CGCTAAGGAAGACCGGGGA 61.056 63.158 6.32 0.00 41.83 4.81
134 135 1.610554 CGCTAAGGAAGACCGGGGAA 61.611 60.000 6.32 0.00 41.83 3.97
135 136 0.616891 GCTAAGGAAGACCGGGGAAA 59.383 55.000 6.32 0.00 41.83 3.13
136 137 1.003928 GCTAAGGAAGACCGGGGAAAA 59.996 52.381 6.32 0.00 41.83 2.29
137 138 2.553685 GCTAAGGAAGACCGGGGAAAAA 60.554 50.000 6.32 0.00 41.83 1.94
138 139 1.991121 AAGGAAGACCGGGGAAAAAC 58.009 50.000 6.32 0.00 41.83 2.43
139 140 0.111832 AGGAAGACCGGGGAAAAACC 59.888 55.000 6.32 0.00 41.83 3.27
140 141 0.178984 GGAAGACCGGGGAAAAACCA 60.179 55.000 6.32 0.00 41.20 3.67
141 142 1.694844 GAAGACCGGGGAAAAACCAA 58.305 50.000 6.32 0.00 41.20 3.67
142 143 2.033372 GAAGACCGGGGAAAAACCAAA 58.967 47.619 6.32 0.00 41.20 3.28
143 144 2.162264 AGACCGGGGAAAAACCAAAA 57.838 45.000 6.32 0.00 41.20 2.44
144 145 1.758280 AGACCGGGGAAAAACCAAAAC 59.242 47.619 6.32 0.00 41.20 2.43
145 146 0.460722 ACCGGGGAAAAACCAAAACG 59.539 50.000 6.32 0.00 41.20 3.60
146 147 0.460722 CCGGGGAAAAACCAAAACGT 59.539 50.000 0.00 0.00 41.20 3.99
147 148 1.536496 CCGGGGAAAAACCAAAACGTC 60.536 52.381 0.00 0.00 41.20 4.34
148 149 1.842720 GGGGAAAAACCAAAACGTCG 58.157 50.000 0.00 0.00 41.20 5.12
149 150 1.404748 GGGGAAAAACCAAAACGTCGA 59.595 47.619 0.00 0.00 41.20 4.20
150 151 2.159268 GGGGAAAAACCAAAACGTCGAA 60.159 45.455 0.00 0.00 41.20 3.71
151 152 3.509740 GGGAAAAACCAAAACGTCGAAA 58.490 40.909 0.00 0.00 41.20 3.46
152 153 3.548668 GGGAAAAACCAAAACGTCGAAAG 59.451 43.478 0.00 0.00 41.20 2.62
153 154 4.413969 GGAAAAACCAAAACGTCGAAAGA 58.586 39.130 0.00 0.00 38.79 2.52
154 155 4.858140 GGAAAAACCAAAACGTCGAAAGAA 59.142 37.500 0.00 0.00 39.52 2.52
155 156 5.345472 GGAAAAACCAAAACGTCGAAAGAAA 59.655 36.000 0.00 0.00 39.52 2.52
156 157 5.750484 AAAACCAAAACGTCGAAAGAAAC 57.250 34.783 0.00 0.00 45.01 2.78
157 158 3.409851 ACCAAAACGTCGAAAGAAACC 57.590 42.857 0.00 0.00 45.01 3.27
158 159 2.223089 ACCAAAACGTCGAAAGAAACCG 60.223 45.455 0.00 0.00 45.01 4.44
159 160 2.368685 CAAAACGTCGAAAGAAACCGG 58.631 47.619 0.00 0.00 45.01 5.28
160 161 0.939419 AAACGTCGAAAGAAACCGGG 59.061 50.000 6.32 0.00 45.01 5.73
161 162 0.881600 AACGTCGAAAGAAACCGGGG 60.882 55.000 6.32 0.00 45.01 5.73
162 163 1.005867 CGTCGAAAGAAACCGGGGA 60.006 57.895 6.32 0.00 45.01 4.81
163 164 0.600782 CGTCGAAAGAAACCGGGGAA 60.601 55.000 6.32 0.00 45.01 3.97
164 165 1.596603 GTCGAAAGAAACCGGGGAAA 58.403 50.000 6.32 0.00 45.01 3.13
165 166 1.948834 GTCGAAAGAAACCGGGGAAAA 59.051 47.619 6.32 0.00 45.01 2.29
166 167 1.948834 TCGAAAGAAACCGGGGAAAAC 59.051 47.619 6.32 0.00 37.03 2.43
167 168 1.677052 CGAAAGAAACCGGGGAAAACA 59.323 47.619 6.32 0.00 0.00 2.83
168 169 2.287368 CGAAAGAAACCGGGGAAAACAG 60.287 50.000 6.32 0.00 0.00 3.16
169 170 2.447408 AAGAAACCGGGGAAAACAGT 57.553 45.000 6.32 0.00 0.00 3.55
170 171 2.447408 AGAAACCGGGGAAAACAGTT 57.553 45.000 6.32 0.00 0.00 3.16
171 172 2.742348 AGAAACCGGGGAAAACAGTTT 58.258 42.857 6.32 0.00 33.55 2.66
172 173 3.900971 AGAAACCGGGGAAAACAGTTTA 58.099 40.909 6.32 0.00 31.14 2.01
173 174 4.279982 AGAAACCGGGGAAAACAGTTTAA 58.720 39.130 6.32 0.00 31.14 1.52
174 175 4.710865 AGAAACCGGGGAAAACAGTTTAAA 59.289 37.500 6.32 0.00 31.14 1.52
175 176 5.187381 AGAAACCGGGGAAAACAGTTTAAAA 59.813 36.000 6.32 0.00 31.14 1.52
176 177 5.417754 AACCGGGGAAAACAGTTTAAAAA 57.582 34.783 6.32 0.00 0.00 1.94
177 178 5.013568 ACCGGGGAAAACAGTTTAAAAAG 57.986 39.130 6.32 0.00 0.00 2.27
178 179 3.805422 CCGGGGAAAACAGTTTAAAAAGC 59.195 43.478 0.00 0.00 0.00 3.51
179 180 3.805422 CGGGGAAAACAGTTTAAAAAGCC 59.195 43.478 0.00 0.00 0.00 4.35
180 181 3.805422 GGGGAAAACAGTTTAAAAAGCCG 59.195 43.478 0.00 0.00 0.00 5.52
181 182 4.441773 GGGGAAAACAGTTTAAAAAGCCGA 60.442 41.667 0.00 0.00 0.00 5.54
182 183 5.110598 GGGAAAACAGTTTAAAAAGCCGAA 58.889 37.500 0.00 0.00 0.00 4.30
183 184 5.581479 GGGAAAACAGTTTAAAAAGCCGAAA 59.419 36.000 0.00 0.00 0.00 3.46
184 185 6.092396 GGGAAAACAGTTTAAAAAGCCGAAAA 59.908 34.615 0.00 0.00 0.00 2.29
185 186 6.957077 GGAAAACAGTTTAAAAAGCCGAAAAC 59.043 34.615 0.00 0.00 33.11 2.43
186 187 5.689927 AACAGTTTAAAAAGCCGAAAACG 57.310 34.783 0.00 0.00 37.02 3.60
187 188 3.548668 ACAGTTTAAAAAGCCGAAAACGC 59.451 39.130 0.00 0.00 37.02 4.84
188 189 2.784928 AGTTTAAAAAGCCGAAAACGCG 59.215 40.909 3.53 3.53 37.02 6.01
189 190 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
190 191 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
191 192 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
192 193 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
195 196 4.003011 CCGAAAACGCGTGCGGAA 62.003 61.111 31.93 0.00 46.29 4.30
196 197 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
197 198 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
198 199 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
199 200 1.125270 GAAAACGCGTGCGGAAAAAT 58.875 45.000 14.98 0.00 44.69 1.82
200 201 2.308811 GAAAACGCGTGCGGAAAAATA 58.691 42.857 14.98 0.00 44.69 1.40
201 202 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
202 203 2.402640 AACGCGTGCGGAAAAATAAA 57.597 40.000 14.98 0.00 44.69 1.40
203 204 2.402640 ACGCGTGCGGAAAAATAAAA 57.597 40.000 12.93 0.00 44.69 1.52
204 205 2.728922 ACGCGTGCGGAAAAATAAAAA 58.271 38.095 12.93 0.00 44.69 1.94
205 206 3.310246 ACGCGTGCGGAAAAATAAAAAT 58.690 36.364 12.93 0.00 44.69 1.82
206 207 4.474113 ACGCGTGCGGAAAAATAAAAATA 58.526 34.783 12.93 0.00 44.69 1.40
207 208 4.916249 ACGCGTGCGGAAAAATAAAAATAA 59.084 33.333 12.93 0.00 44.69 1.40
208 209 5.401674 ACGCGTGCGGAAAAATAAAAATAAA 59.598 32.000 12.93 0.00 44.69 1.40
209 210 6.074463 ACGCGTGCGGAAAAATAAAAATAAAA 60.074 30.769 12.93 0.00 44.69 1.52
210 211 6.950979 CGCGTGCGGAAAAATAAAAATAAAAT 59.049 30.769 6.30 0.00 35.56 1.82
211 212 8.102716 CGCGTGCGGAAAAATAAAAATAAAATA 58.897 29.630 6.30 0.00 35.56 1.40
212 213 9.742552 GCGTGCGGAAAAATAAAAATAAAATAA 57.257 25.926 0.00 0.00 0.00 1.40
226 227 9.890629 AAAAATAAAATAAAATCTGGAGGGAGC 57.109 29.630 0.00 0.00 0.00 4.70
227 228 6.884280 ATAAAATAAAATCTGGAGGGAGCG 57.116 37.500 0.00 0.00 0.00 5.03
228 229 3.933861 AATAAAATCTGGAGGGAGCGT 57.066 42.857 0.00 0.00 0.00 5.07
229 230 2.981859 TAAAATCTGGAGGGAGCGTC 57.018 50.000 0.00 0.00 0.00 5.19
230 231 0.253327 AAAATCTGGAGGGAGCGTCC 59.747 55.000 0.00 0.00 38.71 4.79
231 232 0.909610 AAATCTGGAGGGAGCGTCCA 60.910 55.000 0.00 0.00 44.63 4.02
234 235 2.363018 TGGAGGGAGCGTCCAGAG 60.363 66.667 0.00 0.00 42.45 3.35
235 236 3.844090 GGAGGGAGCGTCCAGAGC 61.844 72.222 6.41 0.00 38.64 4.09
236 237 4.200283 GAGGGAGCGTCCAGAGCG 62.200 72.222 6.41 0.00 38.64 5.03
244 245 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
245 246 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
255 256 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
256 257 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
257 258 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
258 259 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
259 260 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
260 261 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
261 262 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
262 263 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
263 264 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
264 265 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
265 266 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
271 272 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
282 283 2.434884 CCAAGTGGCGCTGATCGT 60.435 61.111 7.64 0.00 41.07 3.73
283 284 2.034879 CCAAGTGGCGCTGATCGTT 61.035 57.895 7.64 0.00 41.07 3.85
284 285 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
285 286 2.680913 AAGTGGCGCTGATCGTTGC 61.681 57.895 7.64 0.00 41.07 4.17
291 292 4.485554 GCTGATCGTTGCGAGACT 57.514 55.556 0.00 0.00 39.91 3.24
292 293 2.743195 GCTGATCGTTGCGAGACTT 58.257 52.632 0.00 0.00 39.91 3.01
293 294 0.642800 GCTGATCGTTGCGAGACTTC 59.357 55.000 0.00 0.00 39.91 3.01
294 295 1.272781 CTGATCGTTGCGAGACTTCC 58.727 55.000 0.00 0.00 39.91 3.46
295 296 0.456142 TGATCGTTGCGAGACTTCCG 60.456 55.000 0.00 0.00 39.91 4.30
296 297 0.179171 GATCGTTGCGAGACTTCCGA 60.179 55.000 0.00 0.00 39.91 4.55
297 298 0.242825 ATCGTTGCGAGACTTCCGAA 59.757 50.000 0.00 0.00 39.91 4.30
298 299 0.386858 TCGTTGCGAGACTTCCGAAG 60.387 55.000 6.59 6.59 0.00 3.79
299 300 4.899433 ATCGTTGCGAGACTTCCGAAGG 62.899 54.545 12.77 0.00 45.86 3.46
311 312 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
312 313 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
313 314 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
314 315 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
315 316 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
316 317 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
317 318 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
318 319 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
319 320 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
320 321 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
321 322 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
322 323 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
323 324 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
324 325 2.353406 GCTCGTTAACTAGTTGCTCCCA 60.353 50.000 18.56 0.00 0.00 4.37
325 326 3.863400 GCTCGTTAACTAGTTGCTCCCAA 60.863 47.826 18.56 0.09 0.00 4.12
326 327 4.312443 CTCGTTAACTAGTTGCTCCCAAA 58.688 43.478 18.56 0.00 31.68 3.28
327 328 4.706035 TCGTTAACTAGTTGCTCCCAAAA 58.294 39.130 18.56 0.00 31.68 2.44
328 329 5.310451 TCGTTAACTAGTTGCTCCCAAAAT 58.690 37.500 18.56 0.00 31.68 1.82
329 330 5.410439 TCGTTAACTAGTTGCTCCCAAAATC 59.590 40.000 18.56 0.00 31.68 2.17
330 331 5.391629 CGTTAACTAGTTGCTCCCAAAATCC 60.392 44.000 18.56 0.00 31.68 3.01
331 332 4.388577 AACTAGTTGCTCCCAAAATCCT 57.611 40.909 7.48 0.00 31.68 3.24
332 333 5.514500 AACTAGTTGCTCCCAAAATCCTA 57.486 39.130 7.48 0.00 31.68 2.94
333 334 5.514500 ACTAGTTGCTCCCAAAATCCTAA 57.486 39.130 0.00 0.00 31.68 2.69
334 335 5.887754 ACTAGTTGCTCCCAAAATCCTAAA 58.112 37.500 0.00 0.00 31.68 1.85
335 336 6.311735 ACTAGTTGCTCCCAAAATCCTAAAA 58.688 36.000 0.00 0.00 31.68 1.52
336 337 5.468540 AGTTGCTCCCAAAATCCTAAAAC 57.531 39.130 0.00 0.00 31.68 2.43
337 338 4.898861 AGTTGCTCCCAAAATCCTAAAACA 59.101 37.500 0.00 0.00 31.68 2.83
338 339 4.864704 TGCTCCCAAAATCCTAAAACAC 57.135 40.909 0.00 0.00 0.00 3.32
339 340 4.219115 TGCTCCCAAAATCCTAAAACACA 58.781 39.130 0.00 0.00 0.00 3.72
340 341 4.280677 TGCTCCCAAAATCCTAAAACACAG 59.719 41.667 0.00 0.00 0.00 3.66
341 342 4.321974 GCTCCCAAAATCCTAAAACACAGG 60.322 45.833 0.00 0.00 34.20 4.00
342 343 4.810345 TCCCAAAATCCTAAAACACAGGT 58.190 39.130 0.00 0.00 34.56 4.00
343 344 5.954757 TCCCAAAATCCTAAAACACAGGTA 58.045 37.500 0.00 0.00 34.56 3.08
344 345 6.557568 TCCCAAAATCCTAAAACACAGGTAT 58.442 36.000 0.00 0.00 34.56 2.73
345 346 6.661805 TCCCAAAATCCTAAAACACAGGTATC 59.338 38.462 0.00 0.00 34.56 2.24
346 347 6.127451 CCCAAAATCCTAAAACACAGGTATCC 60.127 42.308 0.00 0.00 34.56 2.59
347 348 6.127451 CCAAAATCCTAAAACACAGGTATCCC 60.127 42.308 0.00 0.00 34.56 3.85
348 349 5.789574 AATCCTAAAACACAGGTATCCCA 57.210 39.130 0.00 0.00 34.56 4.37
349 350 5.994416 ATCCTAAAACACAGGTATCCCAT 57.006 39.130 0.00 0.00 34.56 4.00
350 351 5.367945 TCCTAAAACACAGGTATCCCATC 57.632 43.478 0.00 0.00 34.56 3.51
351 352 4.785914 TCCTAAAACACAGGTATCCCATCA 59.214 41.667 0.00 0.00 34.56 3.07
352 353 5.431731 TCCTAAAACACAGGTATCCCATCAT 59.568 40.000 0.00 0.00 34.56 2.45
353 354 6.069088 TCCTAAAACACAGGTATCCCATCATT 60.069 38.462 0.00 0.00 34.56 2.57
354 355 6.607198 CCTAAAACACAGGTATCCCATCATTT 59.393 38.462 0.00 0.00 0.00 2.32
355 356 6.933514 AAAACACAGGTATCCCATCATTTT 57.066 33.333 0.00 0.00 0.00 1.82
356 357 6.933514 AAACACAGGTATCCCATCATTTTT 57.066 33.333 0.00 0.00 0.00 1.94
357 358 6.530019 AACACAGGTATCCCATCATTTTTC 57.470 37.500 0.00 0.00 0.00 2.29
358 359 5.831103 ACACAGGTATCCCATCATTTTTCT 58.169 37.500 0.00 0.00 0.00 2.52
359 360 5.888161 ACACAGGTATCCCATCATTTTTCTC 59.112 40.000 0.00 0.00 0.00 2.87
360 361 5.887598 CACAGGTATCCCATCATTTTTCTCA 59.112 40.000 0.00 0.00 0.00 3.27
361 362 6.039047 CACAGGTATCCCATCATTTTTCTCAG 59.961 42.308 0.00 0.00 0.00 3.35
362 363 6.125029 CAGGTATCCCATCATTTTTCTCAGT 58.875 40.000 0.00 0.00 0.00 3.41
363 364 6.604795 CAGGTATCCCATCATTTTTCTCAGTT 59.395 38.462 0.00 0.00 0.00 3.16
364 365 7.775093 CAGGTATCCCATCATTTTTCTCAGTTA 59.225 37.037 0.00 0.00 0.00 2.24
365 366 8.506083 AGGTATCCCATCATTTTTCTCAGTTAT 58.494 33.333 0.00 0.00 0.00 1.89
366 367 9.793259 GGTATCCCATCATTTTTCTCAGTTATA 57.207 33.333 0.00 0.00 0.00 0.98
369 370 9.927081 ATCCCATCATTTTTCTCAGTTATAGTT 57.073 29.630 0.00 0.00 0.00 2.24
400 401 7.009265 TCGAGAAGTAATGTTTTCTAGATTGCG 59.991 37.037 0.00 0.00 33.97 4.85
402 403 8.324163 AGAAGTAATGTTTTCTAGATTGCGTT 57.676 30.769 0.00 0.00 32.13 4.84
434 435 8.380743 TGCTTGCAATCTATTCAAACAAATTT 57.619 26.923 0.00 0.00 0.00 1.82
435 436 9.486497 TGCTTGCAATCTATTCAAACAAATTTA 57.514 25.926 0.00 0.00 0.00 1.40
467 468 9.429359 CTCTACAATTCTATGTCATACCAATCC 57.571 37.037 0.00 0.00 34.75 3.01
476 477 9.559732 TCTATGTCATACCAATCCTGTAAATTG 57.440 33.333 0.00 0.00 34.55 2.32
488 494 8.680001 CAATCCTGTAAATTGATCTGTGATTGA 58.320 33.333 0.00 0.00 38.24 2.57
490 496 8.812513 TCCTGTAAATTGATCTGTGATTGAAT 57.187 30.769 0.00 0.00 0.00 2.57
500 506 9.904198 TTGATCTGTGATTGAATGGTTATTAGA 57.096 29.630 0.00 0.00 0.00 2.10
504 510 9.958180 TCTGTGATTGAATGGTTATTAGAAGAA 57.042 29.630 0.00 0.00 0.00 2.52
505 511 9.994432 CTGTGATTGAATGGTTATTAGAAGAAC 57.006 33.333 0.00 0.00 0.00 3.01
506 512 9.513906 TGTGATTGAATGGTTATTAGAAGAACA 57.486 29.630 2.52 0.00 32.02 3.18
511 517 8.877864 TGAATGGTTATTAGAAGAACAATGGT 57.122 30.769 2.52 0.00 32.02 3.55
512 518 9.967451 TGAATGGTTATTAGAAGAACAATGGTA 57.033 29.630 2.52 0.00 32.02 3.25
516 522 9.613428 TGGTTATTAGAAGAACAATGGTATCTG 57.387 33.333 2.52 0.00 32.02 2.90
517 523 9.832445 GGTTATTAGAAGAACAATGGTATCTGA 57.168 33.333 2.52 0.00 32.02 3.27
523 623 4.589908 AGAACAATGGTATCTGAACCCAC 58.410 43.478 1.29 0.00 38.90 4.61
526 626 0.837272 ATGGTATCTGAACCCACCCG 59.163 55.000 1.29 0.00 38.90 5.28
539 639 4.914177 ACCCACCCGAGTTTAATTTCTA 57.086 40.909 0.00 0.00 0.00 2.10
540 640 4.840271 ACCCACCCGAGTTTAATTTCTAG 58.160 43.478 0.00 0.00 0.00 2.43
596 696 3.681897 AGTCTTTCTGATGATGTGCGTTC 59.318 43.478 0.00 0.00 0.00 3.95
601 701 2.029110 TCTGATGATGTGCGTTCAGTGA 60.029 45.455 0.00 0.00 0.00 3.41
606 706 0.969149 ATGTGCGTTCAGTGAGAGGA 59.031 50.000 0.00 0.00 0.00 3.71
626 726 5.579564 GGAGACGTTCCTGTTAACTATCT 57.420 43.478 7.22 0.00 43.16 1.98
636 736 4.291783 CTGTTAACTATCTAGGCGTCTGC 58.708 47.826 0.00 0.00 41.71 4.26
637 737 3.242969 TGTTAACTATCTAGGCGTCTGCG 60.243 47.826 0.00 0.00 44.10 5.18
653 753 2.987593 CGGCGACTTCGTCAATCG 59.012 61.111 0.00 0.00 45.47 3.34
659 759 3.103793 CGACTTCGTCAATCGCAAAAT 57.896 42.857 0.00 0.00 39.67 1.82
674 774 4.688879 TCGCAAAATGATGTACCGGATATC 59.311 41.667 9.46 9.42 0.00 1.63
696 826 4.758165 TCCGTGCGTGTATTCATAGAGATA 59.242 41.667 0.00 0.00 0.00 1.98
732 866 7.682021 GCATATGTATGAGTATCCGCATCTGTA 60.682 40.741 4.29 0.00 35.75 2.74
770 904 7.156876 TGTCATACCAATCTGTTTCAATTCC 57.843 36.000 0.00 0.00 0.00 3.01
841 989 1.065636 CCTGACTGCACATGGACAGAT 60.066 52.381 20.33 7.76 37.35 2.90
844 992 1.741706 GACTGCACATGGACAGATTGG 59.258 52.381 20.33 0.00 37.35 3.16
907 1055 3.826157 CCATCAAAACCCTCAAGTTGCTA 59.174 43.478 0.00 0.00 0.00 3.49
956 1113 3.898509 TTTGCACCCACGCACAGC 61.899 61.111 0.00 0.00 42.87 4.40
960 1117 3.653009 CACCCACGCACAGCACAG 61.653 66.667 0.00 0.00 0.00 3.66
989 1146 1.532868 CAGCACAGCACTAGGACAAAC 59.467 52.381 0.00 0.00 0.00 2.93
1031 1191 3.812019 CGTGTCCTACGCGCTCCT 61.812 66.667 5.73 0.00 45.29 3.69
1032 1192 2.102553 GTGTCCTACGCGCTCCTC 59.897 66.667 5.73 0.00 0.00 3.71
1038 1198 3.170810 CTACGCGCTCCTCCTCGTC 62.171 68.421 5.73 0.00 36.50 4.20
1347 1507 2.915659 TCGACAGGGTGGTTCGCT 60.916 61.111 0.00 0.00 40.00 4.93
1488 1648 2.251075 CCGTGCGCGAACAACATT 59.749 55.556 23.45 0.00 41.33 2.71
1536 1696 3.518998 CTCGGGCTCGACACGGAT 61.519 66.667 3.45 0.00 40.88 4.18
1593 1753 1.948145 CCTAGGTACACGAGCTACCAG 59.052 57.143 0.00 1.41 36.80 4.00
1629 1796 1.816835 TCGGATCCGTGCTATATCACC 59.183 52.381 32.15 0.00 40.74 4.02
1668 1835 8.906636 TTCATCACGTATTAGTAAGTCAGAAC 57.093 34.615 0.00 0.00 0.00 3.01
1757 1929 4.145997 GCTGTTCACGGTTATTACAAACG 58.854 43.478 0.00 0.00 0.00 3.60
1885 2057 5.982516 CCAACCAAGATTTCACAAATTTCGA 59.017 36.000 0.00 0.00 0.00 3.71
1907 2079 9.653287 TTCGAGAACATAATACTGATTCTGTTT 57.347 29.630 1.28 0.46 40.52 2.83
1911 2083 9.507329 AGAACATAATACTGATTCTGTTTGTGT 57.493 29.630 1.28 7.84 40.52 3.72
1925 2097 2.142357 TTGTGTCTGAGTCTCGCCCG 62.142 60.000 0.00 0.00 0.00 6.13
1927 2099 2.333417 TGTCTGAGTCTCGCCCGAC 61.333 63.158 0.00 0.72 0.00 4.79
2115 2294 1.203052 AGTGAAAATCAGCCAATGCCG 59.797 47.619 0.00 0.00 38.69 5.69
2125 2304 2.111878 CAATGCCGGCTCTAGGGG 59.888 66.667 29.70 6.21 0.00 4.79
2135 2314 1.139853 GGCTCTAGGGGACAACATGAG 59.860 57.143 0.00 0.00 0.00 2.90
2152 2331 8.076178 ACAACATGAGTAAATTAAGTGTTCTGC 58.924 33.333 0.00 0.00 0.00 4.26
2170 2349 6.070596 TGTTCTGCTCTCTCCAAATTCTGATA 60.071 38.462 0.00 0.00 0.00 2.15
2178 2357 7.733969 TCTCTCCAAATTCTGATATTCTCTGG 58.266 38.462 0.00 0.00 0.00 3.86
2294 2476 9.803507 TTTTATCATTTCTGCTCATCCAGATAT 57.196 29.630 0.00 0.00 41.18 1.63
2307 2489 1.477558 CCAGATATCCCAGCAACCCAC 60.478 57.143 0.00 0.00 0.00 4.61
2313 2495 0.035820 TCCCAGCAACCCACGATAAC 60.036 55.000 0.00 0.00 0.00 1.89
2323 2505 5.703592 GCAACCCACGATAACAATATCCATA 59.296 40.000 0.00 0.00 35.47 2.74
2325 2507 6.681729 ACCCACGATAACAATATCCATAGT 57.318 37.500 0.00 0.00 35.47 2.12
2344 2526 4.955811 AGTAATGTCTGTTGTGAGGTGA 57.044 40.909 0.00 0.00 0.00 4.02
2405 2587 6.430000 GGCTCTTAACTTGTTTGGAACTATGA 59.570 38.462 0.00 0.00 0.00 2.15
2486 2668 1.496001 TGGCATCAGAACATAGGGCAT 59.504 47.619 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.537792 TTTAGCGAGAGTCACGGCCG 62.538 60.000 26.86 26.86 0.00 6.13
5 6 0.802607 CTTTAGCGAGAGTCACGGCC 60.803 60.000 11.95 0.00 0.00 6.13
6 7 1.414527 GCTTTAGCGAGAGTCACGGC 61.415 60.000 11.95 2.56 0.00 5.68
7 8 0.109272 TGCTTTAGCGAGAGTCACGG 60.109 55.000 11.95 0.00 45.83 4.94
8 9 0.985549 GTGCTTTAGCGAGAGTCACG 59.014 55.000 5.53 5.53 45.83 4.35
9 10 2.065993 TGTGCTTTAGCGAGAGTCAC 57.934 50.000 0.00 5.49 45.83 3.67
10 11 2.404215 GTTGTGCTTTAGCGAGAGTCA 58.596 47.619 0.00 0.00 45.83 3.41
11 12 1.727335 GGTTGTGCTTTAGCGAGAGTC 59.273 52.381 0.00 0.00 45.83 3.36
12 13 1.797025 GGTTGTGCTTTAGCGAGAGT 58.203 50.000 0.00 0.00 45.83 3.24
13 14 0.716108 CGGTTGTGCTTTAGCGAGAG 59.284 55.000 0.00 0.00 45.83 3.20
14 15 0.032952 ACGGTTGTGCTTTAGCGAGA 59.967 50.000 10.18 0.00 45.83 4.04
15 16 0.163788 CACGGTTGTGCTTTAGCGAG 59.836 55.000 10.18 0.56 45.83 5.03
16 17 2.230892 CACGGTTGTGCTTTAGCGA 58.769 52.632 10.18 0.00 45.83 4.93
17 18 4.818417 CACGGTTGTGCTTTAGCG 57.182 55.556 0.00 0.00 45.83 4.26
26 27 0.742505 TTCACGAGAGACACGGTTGT 59.257 50.000 0.00 0.00 39.32 3.32
27 28 1.847818 TTTCACGAGAGACACGGTTG 58.152 50.000 0.00 0.00 34.93 3.77
28 29 2.589798 TTTTCACGAGAGACACGGTT 57.410 45.000 0.00 0.00 34.93 4.44
29 30 2.589798 TTTTTCACGAGAGACACGGT 57.410 45.000 0.00 0.00 34.93 4.83
102 103 3.204526 TCCTTAGCGTTTCGACCAAAAA 58.795 40.909 0.00 0.00 0.00 1.94
103 104 2.836262 TCCTTAGCGTTTCGACCAAAA 58.164 42.857 0.00 0.00 0.00 2.44
104 105 2.529780 TCCTTAGCGTTTCGACCAAA 57.470 45.000 0.00 0.00 0.00 3.28
105 106 2.036217 TCTTCCTTAGCGTTTCGACCAA 59.964 45.455 0.00 0.00 0.00 3.67
106 107 1.614903 TCTTCCTTAGCGTTTCGACCA 59.385 47.619 0.00 0.00 0.00 4.02
107 108 1.991264 GTCTTCCTTAGCGTTTCGACC 59.009 52.381 0.00 0.00 0.00 4.79
108 109 1.991264 GGTCTTCCTTAGCGTTTCGAC 59.009 52.381 0.00 0.00 0.00 4.20
109 110 1.401931 CGGTCTTCCTTAGCGTTTCGA 60.402 52.381 0.00 0.00 33.40 3.71
110 111 0.989890 CGGTCTTCCTTAGCGTTTCG 59.010 55.000 0.00 0.00 33.40 3.46
111 112 1.356938 CCGGTCTTCCTTAGCGTTTC 58.643 55.000 0.00 0.00 36.16 2.78
112 113 0.036671 CCCGGTCTTCCTTAGCGTTT 60.037 55.000 0.00 0.00 36.16 3.60
113 114 1.595357 CCCGGTCTTCCTTAGCGTT 59.405 57.895 0.00 0.00 36.16 4.84
114 115 2.356780 CCCCGGTCTTCCTTAGCGT 61.357 63.158 0.00 0.00 36.16 5.07
115 116 1.610554 TTCCCCGGTCTTCCTTAGCG 61.611 60.000 0.00 0.00 37.58 4.26
116 117 0.616891 TTTCCCCGGTCTTCCTTAGC 59.383 55.000 0.00 0.00 0.00 3.09
117 118 3.079578 GTTTTTCCCCGGTCTTCCTTAG 58.920 50.000 0.00 0.00 0.00 2.18
118 119 2.224843 GGTTTTTCCCCGGTCTTCCTTA 60.225 50.000 0.00 0.00 0.00 2.69
119 120 1.479942 GGTTTTTCCCCGGTCTTCCTT 60.480 52.381 0.00 0.00 0.00 3.36
120 121 0.111832 GGTTTTTCCCCGGTCTTCCT 59.888 55.000 0.00 0.00 0.00 3.36
121 122 0.178984 TGGTTTTTCCCCGGTCTTCC 60.179 55.000 0.00 0.00 34.77 3.46
122 123 1.694844 TTGGTTTTTCCCCGGTCTTC 58.305 50.000 0.00 0.00 34.77 2.87
123 124 2.162264 TTTGGTTTTTCCCCGGTCTT 57.838 45.000 0.00 0.00 34.77 3.01
124 125 1.758280 GTTTTGGTTTTTCCCCGGTCT 59.242 47.619 0.00 0.00 34.77 3.85
125 126 1.536496 CGTTTTGGTTTTTCCCCGGTC 60.536 52.381 0.00 0.00 34.77 4.79
126 127 0.460722 CGTTTTGGTTTTTCCCCGGT 59.539 50.000 0.00 0.00 34.77 5.28
127 128 0.460722 ACGTTTTGGTTTTTCCCCGG 59.539 50.000 0.00 0.00 34.77 5.73
128 129 1.842720 GACGTTTTGGTTTTTCCCCG 58.157 50.000 0.00 0.00 34.77 5.73
129 130 1.404748 TCGACGTTTTGGTTTTTCCCC 59.595 47.619 0.00 0.00 34.77 4.81
130 131 2.847959 TCGACGTTTTGGTTTTTCCC 57.152 45.000 0.00 0.00 34.77 3.97
131 132 4.413969 TCTTTCGACGTTTTGGTTTTTCC 58.586 39.130 0.00 0.00 0.00 3.13
132 133 5.995982 TTCTTTCGACGTTTTGGTTTTTC 57.004 34.783 0.00 0.00 0.00 2.29
133 134 5.118971 GGTTTCTTTCGACGTTTTGGTTTTT 59.881 36.000 0.00 0.00 0.00 1.94
134 135 4.622313 GGTTTCTTTCGACGTTTTGGTTTT 59.378 37.500 0.00 0.00 0.00 2.43
135 136 4.168014 GGTTTCTTTCGACGTTTTGGTTT 58.832 39.130 0.00 0.00 0.00 3.27
136 137 3.728566 CGGTTTCTTTCGACGTTTTGGTT 60.729 43.478 0.00 0.00 0.00 3.67
137 138 2.223089 CGGTTTCTTTCGACGTTTTGGT 60.223 45.455 0.00 0.00 0.00 3.67
138 139 2.368685 CGGTTTCTTTCGACGTTTTGG 58.631 47.619 0.00 0.00 0.00 3.28
139 140 2.368685 CCGGTTTCTTTCGACGTTTTG 58.631 47.619 0.00 0.00 0.00 2.44
140 141 1.331447 CCCGGTTTCTTTCGACGTTTT 59.669 47.619 0.00 0.00 0.00 2.43
141 142 0.939419 CCCGGTTTCTTTCGACGTTT 59.061 50.000 0.00 0.00 0.00 3.60
142 143 0.881600 CCCCGGTTTCTTTCGACGTT 60.882 55.000 0.00 0.00 0.00 3.99
143 144 1.301165 CCCCGGTTTCTTTCGACGT 60.301 57.895 0.00 0.00 0.00 4.34
144 145 0.600782 TTCCCCGGTTTCTTTCGACG 60.601 55.000 0.00 0.00 0.00 5.12
145 146 1.596603 TTTCCCCGGTTTCTTTCGAC 58.403 50.000 0.00 0.00 0.00 4.20
146 147 1.948834 GTTTTCCCCGGTTTCTTTCGA 59.051 47.619 0.00 0.00 0.00 3.71
147 148 1.677052 TGTTTTCCCCGGTTTCTTTCG 59.323 47.619 0.00 0.00 0.00 3.46
148 149 2.691526 ACTGTTTTCCCCGGTTTCTTTC 59.308 45.455 0.00 0.00 0.00 2.62
149 150 2.742348 ACTGTTTTCCCCGGTTTCTTT 58.258 42.857 0.00 0.00 0.00 2.52
150 151 2.447408 ACTGTTTTCCCCGGTTTCTT 57.553 45.000 0.00 0.00 0.00 2.52
151 152 2.447408 AACTGTTTTCCCCGGTTTCT 57.553 45.000 0.00 0.00 0.00 2.52
152 153 4.652421 TTAAACTGTTTTCCCCGGTTTC 57.348 40.909 11.48 0.00 40.76 2.78
153 154 5.417754 TTTTAAACTGTTTTCCCCGGTTT 57.582 34.783 11.48 0.00 42.46 3.27
154 155 5.417754 TTTTTAAACTGTTTTCCCCGGTT 57.582 34.783 11.48 0.00 32.88 4.44
155 156 4.681244 GCTTTTTAAACTGTTTTCCCCGGT 60.681 41.667 11.48 0.00 0.00 5.28
156 157 3.805422 GCTTTTTAAACTGTTTTCCCCGG 59.195 43.478 11.48 0.00 0.00 5.73
157 158 3.805422 GGCTTTTTAAACTGTTTTCCCCG 59.195 43.478 11.48 0.00 0.00 5.73
158 159 3.805422 CGGCTTTTTAAACTGTTTTCCCC 59.195 43.478 11.48 3.67 0.00 4.81
159 160 4.684877 TCGGCTTTTTAAACTGTTTTCCC 58.315 39.130 11.48 3.04 0.00 3.97
160 161 6.650239 TTTCGGCTTTTTAAACTGTTTTCC 57.350 33.333 11.48 3.42 0.00 3.13
161 162 6.675332 CGTTTTCGGCTTTTTAAACTGTTTTC 59.325 34.615 11.48 0.00 39.94 2.29
162 163 6.527089 CGTTTTCGGCTTTTTAAACTGTTTT 58.473 32.000 11.48 0.00 39.94 2.43
163 164 5.444877 GCGTTTTCGGCTTTTTAAACTGTTT 60.445 36.000 10.98 10.98 44.29 2.83
164 165 4.031991 GCGTTTTCGGCTTTTTAAACTGTT 59.968 37.500 0.00 0.00 44.29 3.16
165 166 3.548668 GCGTTTTCGGCTTTTTAAACTGT 59.451 39.130 0.00 0.00 44.29 3.55
166 167 3.360289 CGCGTTTTCGGCTTTTTAAACTG 60.360 43.478 0.00 0.00 44.29 3.16
167 168 2.784928 CGCGTTTTCGGCTTTTTAAACT 59.215 40.909 0.00 0.00 44.29 2.66
168 169 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
169 170 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
170 171 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
171 172 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
172 173 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
173 174 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
174 175 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
175 176 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
178 179 2.968330 TTTTCCGCACGCGTTTTCGG 62.968 55.000 28.08 28.08 44.29 4.30
180 181 1.125270 ATTTTTCCGCACGCGTTTTC 58.875 45.000 10.22 0.04 37.81 2.29
181 182 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
182 183 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
183 184 2.402640 TTTATTTTTCCGCACGCGTT 57.597 40.000 10.22 0.00 37.81 4.84
184 185 2.402640 TTTTATTTTTCCGCACGCGT 57.597 40.000 5.58 5.58 37.81 6.01
185 186 3.963340 ATTTTTATTTTTCCGCACGCG 57.037 38.095 3.53 3.53 39.44 6.01
186 187 9.742552 TTATTTTATTTTTATTTTTCCGCACGC 57.257 25.926 0.00 0.00 0.00 5.34
200 201 9.890629 GCTCCCTCCAGATTTTATTTTATTTTT 57.109 29.630 0.00 0.00 0.00 1.94
201 202 8.197439 CGCTCCCTCCAGATTTTATTTTATTTT 58.803 33.333 0.00 0.00 0.00 1.82
202 203 7.342026 ACGCTCCCTCCAGATTTTATTTTATTT 59.658 33.333 0.00 0.00 0.00 1.40
203 204 6.833933 ACGCTCCCTCCAGATTTTATTTTATT 59.166 34.615 0.00 0.00 0.00 1.40
204 205 6.365520 ACGCTCCCTCCAGATTTTATTTTAT 58.634 36.000 0.00 0.00 0.00 1.40
205 206 5.751586 ACGCTCCCTCCAGATTTTATTTTA 58.248 37.500 0.00 0.00 0.00 1.52
206 207 4.600062 ACGCTCCCTCCAGATTTTATTTT 58.400 39.130 0.00 0.00 0.00 1.82
207 208 4.200092 GACGCTCCCTCCAGATTTTATTT 58.800 43.478 0.00 0.00 0.00 1.40
208 209 3.433740 GGACGCTCCCTCCAGATTTTATT 60.434 47.826 0.00 0.00 0.00 1.40
209 210 2.104963 GGACGCTCCCTCCAGATTTTAT 59.895 50.000 0.00 0.00 0.00 1.40
210 211 1.485066 GGACGCTCCCTCCAGATTTTA 59.515 52.381 0.00 0.00 0.00 1.52
211 212 0.253327 GGACGCTCCCTCCAGATTTT 59.747 55.000 0.00 0.00 0.00 1.82
212 213 0.909610 TGGACGCTCCCTCCAGATTT 60.910 55.000 2.23 0.00 35.03 2.17
213 214 1.306141 TGGACGCTCCCTCCAGATT 60.306 57.895 2.23 0.00 35.03 2.40
214 215 2.364560 TGGACGCTCCCTCCAGAT 59.635 61.111 2.23 0.00 35.03 2.90
217 218 2.363018 CTCTGGACGCTCCCTCCA 60.363 66.667 2.23 0.00 35.03 3.86
218 219 3.844090 GCTCTGGACGCTCCCTCC 61.844 72.222 2.23 0.00 35.03 4.30
219 220 4.200283 CGCTCTGGACGCTCCCTC 62.200 72.222 2.23 0.00 35.03 4.30
227 228 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
228 229 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
236 237 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
237 238 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
238 239 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
239 240 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
240 241 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
241 242 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
242 243 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
243 244 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
244 245 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
245 246 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
246 247 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
247 248 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
248 249 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
254 255 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
265 266 2.034879 AACGATCAGCGCCACTTGG 61.035 57.895 2.29 0.00 46.04 3.61
266 267 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
267 268 2.680913 GCAACGATCAGCGCCACTT 61.681 57.895 2.29 0.00 46.04 3.16
268 269 3.121030 GCAACGATCAGCGCCACT 61.121 61.111 2.29 0.00 46.04 4.00
274 275 0.642800 GAAGTCTCGCAACGATCAGC 59.357 55.000 0.00 0.00 34.61 4.26
275 276 1.272781 GGAAGTCTCGCAACGATCAG 58.727 55.000 0.00 0.00 34.61 2.90
276 277 0.456142 CGGAAGTCTCGCAACGATCA 60.456 55.000 0.00 0.00 34.61 2.92
277 278 0.179171 TCGGAAGTCTCGCAACGATC 60.179 55.000 0.00 0.00 34.61 3.69
278 279 0.242825 TTCGGAAGTCTCGCAACGAT 59.757 50.000 0.00 0.00 34.61 3.73
279 280 0.386858 CTTCGGAAGTCTCGCAACGA 60.387 55.000 9.61 0.00 0.00 3.85
280 281 1.344942 CCTTCGGAAGTCTCGCAACG 61.345 60.000 16.07 0.00 0.00 4.10
281 282 0.038526 TCCTTCGGAAGTCTCGCAAC 60.039 55.000 16.07 0.00 0.00 4.17
282 283 0.243907 CTCCTTCGGAAGTCTCGCAA 59.756 55.000 16.07 0.00 0.00 4.85
283 284 1.883732 CTCCTTCGGAAGTCTCGCA 59.116 57.895 16.07 0.00 0.00 5.10
284 285 1.517475 GCTCCTTCGGAAGTCTCGC 60.517 63.158 16.07 8.95 0.00 5.03
285 286 1.226435 CGCTCCTTCGGAAGTCTCG 60.226 63.158 16.07 11.43 0.00 4.04
286 287 1.517475 GCGCTCCTTCGGAAGTCTC 60.517 63.158 16.07 4.13 0.00 3.36
287 288 1.939769 GAGCGCTCCTTCGGAAGTCT 61.940 60.000 27.22 5.47 0.00 3.24
288 289 1.517475 GAGCGCTCCTTCGGAAGTC 60.517 63.158 27.22 0.00 0.00 3.01
289 290 2.574399 GAGCGCTCCTTCGGAAGT 59.426 61.111 27.22 0.00 0.00 3.01
290 291 2.580867 CGAGCGCTCCTTCGGAAG 60.581 66.667 30.66 10.96 0.00 3.46
291 292 1.588824 TAACGAGCGCTCCTTCGGAA 61.589 55.000 30.66 10.15 0.00 4.30
292 293 1.588824 TTAACGAGCGCTCCTTCGGA 61.589 55.000 30.66 12.50 0.00 4.55
293 294 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
294 295 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
295 296 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
296 297 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
297 298 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
298 299 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
299 300 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
300 301 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
301 302 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
302 303 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
303 304 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
304 305 3.587797 TGGGAGCAACTAGTTAACGAG 57.412 47.619 13.50 13.50 0.00 4.18
305 306 4.339872 TTTGGGAGCAACTAGTTAACGA 57.660 40.909 8.04 0.00 0.00 3.85
306 307 5.391629 GGATTTTGGGAGCAACTAGTTAACG 60.392 44.000 8.04 0.00 0.00 3.18
307 308 5.710567 AGGATTTTGGGAGCAACTAGTTAAC 59.289 40.000 8.04 3.72 0.00 2.01
308 309 5.887754 AGGATTTTGGGAGCAACTAGTTAA 58.112 37.500 8.04 0.00 0.00 2.01
309 310 5.514500 AGGATTTTGGGAGCAACTAGTTA 57.486 39.130 8.04 0.00 0.00 2.24
310 311 4.388577 AGGATTTTGGGAGCAACTAGTT 57.611 40.909 1.12 1.12 0.00 2.24
311 312 5.514500 TTAGGATTTTGGGAGCAACTAGT 57.486 39.130 0.00 0.00 0.00 2.57
312 313 6.208599 TGTTTTAGGATTTTGGGAGCAACTAG 59.791 38.462 0.00 0.00 0.00 2.57
313 314 6.015772 GTGTTTTAGGATTTTGGGAGCAACTA 60.016 38.462 0.00 0.00 0.00 2.24
314 315 4.898861 TGTTTTAGGATTTTGGGAGCAACT 59.101 37.500 0.00 0.00 0.00 3.16
315 316 4.988540 GTGTTTTAGGATTTTGGGAGCAAC 59.011 41.667 0.00 0.00 0.00 4.17
316 317 4.651503 TGTGTTTTAGGATTTTGGGAGCAA 59.348 37.500 0.00 0.00 0.00 3.91
317 318 4.219115 TGTGTTTTAGGATTTTGGGAGCA 58.781 39.130 0.00 0.00 0.00 4.26
318 319 4.321974 CCTGTGTTTTAGGATTTTGGGAGC 60.322 45.833 0.00 0.00 37.52 4.70
319 320 4.832823 ACCTGTGTTTTAGGATTTTGGGAG 59.167 41.667 0.00 0.00 38.71 4.30
320 321 4.810345 ACCTGTGTTTTAGGATTTTGGGA 58.190 39.130 0.00 0.00 38.71 4.37
321 322 6.127451 GGATACCTGTGTTTTAGGATTTTGGG 60.127 42.308 0.00 0.00 38.71 4.12
322 323 6.863275 GGATACCTGTGTTTTAGGATTTTGG 58.137 40.000 0.00 0.00 38.71 3.28
343 344 9.927081 AACTATAACTGAGAAAAATGATGGGAT 57.073 29.630 0.00 0.00 0.00 3.85
356 357 9.228949 ACTTCTCGAAACTAACTATAACTGAGA 57.771 33.333 0.00 0.00 0.00 3.27
366 367 9.543783 AGAAAACATTACTTCTCGAAACTAACT 57.456 29.630 0.00 0.00 0.00 2.24
370 371 9.930693 ATCTAGAAAACATTACTTCTCGAAACT 57.069 29.630 0.00 0.00 33.89 2.66
373 374 8.656849 GCAATCTAGAAAACATTACTTCTCGAA 58.343 33.333 0.00 0.00 33.89 3.71
374 375 7.009265 CGCAATCTAGAAAACATTACTTCTCGA 59.991 37.037 0.00 0.00 33.89 4.04
454 455 8.274322 AGATCAATTTACAGGATTGGTATGACA 58.726 33.333 0.00 0.00 35.66 3.58
466 467 7.919091 CCATTCAATCACAGATCAATTTACAGG 59.081 37.037 0.00 0.00 0.00 4.00
467 468 8.464404 ACCATTCAATCACAGATCAATTTACAG 58.536 33.333 0.00 0.00 0.00 2.74
490 496 9.613428 CAGATACCATTGTTCTTCTAATAACCA 57.387 33.333 0.00 0.00 0.00 3.67
496 502 7.110155 GGGTTCAGATACCATTGTTCTTCTAA 58.890 38.462 0.00 0.00 40.09 2.10
497 503 6.214615 TGGGTTCAGATACCATTGTTCTTCTA 59.785 38.462 0.00 0.00 40.09 2.10
500 506 5.010282 GTGGGTTCAGATACCATTGTTCTT 58.990 41.667 0.00 0.00 40.09 2.52
504 510 2.025321 GGGTGGGTTCAGATACCATTGT 60.025 50.000 0.00 0.00 40.09 2.71
505 511 2.654863 GGGTGGGTTCAGATACCATTG 58.345 52.381 0.00 0.00 40.09 2.82
506 512 1.211949 CGGGTGGGTTCAGATACCATT 59.788 52.381 0.00 0.00 40.09 3.16
507 513 0.837272 CGGGTGGGTTCAGATACCAT 59.163 55.000 0.00 0.00 40.09 3.55
509 515 0.464452 CTCGGGTGGGTTCAGATACC 59.536 60.000 0.00 0.00 37.47 2.73
510 516 1.192428 ACTCGGGTGGGTTCAGATAC 58.808 55.000 0.00 0.00 0.00 2.24
511 517 1.946984 AACTCGGGTGGGTTCAGATA 58.053 50.000 0.00 0.00 0.00 1.98
512 518 1.064825 AAACTCGGGTGGGTTCAGAT 58.935 50.000 0.00 0.00 0.00 2.90
513 519 1.719529 TAAACTCGGGTGGGTTCAGA 58.280 50.000 0.00 0.00 0.00 3.27
514 520 2.554370 TTAAACTCGGGTGGGTTCAG 57.446 50.000 0.00 0.00 0.00 3.02
515 521 3.512219 AATTAAACTCGGGTGGGTTCA 57.488 42.857 0.00 0.00 0.00 3.18
516 522 4.077108 AGAAATTAAACTCGGGTGGGTTC 58.923 43.478 0.00 0.00 0.00 3.62
517 523 4.108501 AGAAATTAAACTCGGGTGGGTT 57.891 40.909 0.00 0.00 0.00 4.11
518 524 3.801307 AGAAATTAAACTCGGGTGGGT 57.199 42.857 0.00 0.00 0.00 4.51
523 623 6.872020 TGTCAAGTCTAGAAATTAAACTCGGG 59.128 38.462 0.00 0.00 0.00 5.14
539 639 7.068593 TCCAGAAAAATCAACAATGTCAAGTCT 59.931 33.333 0.00 0.00 0.00 3.24
540 640 7.202526 TCCAGAAAAATCAACAATGTCAAGTC 58.797 34.615 0.00 0.00 0.00 3.01
606 706 5.067544 GCCTAGATAGTTAACAGGAACGTCT 59.932 44.000 12.00 5.31 35.12 4.18
615 715 3.242969 CGCAGACGCCTAGATAGTTAACA 60.243 47.826 8.61 0.00 33.11 2.41
616 716 3.298317 CGCAGACGCCTAGATAGTTAAC 58.702 50.000 0.00 0.00 33.11 2.01
617 717 2.292569 CCGCAGACGCCTAGATAGTTAA 59.707 50.000 0.00 0.00 38.22 2.01
618 718 1.878088 CCGCAGACGCCTAGATAGTTA 59.122 52.381 0.00 0.00 38.22 2.24
620 720 1.797211 GCCGCAGACGCCTAGATAGT 61.797 60.000 0.00 0.00 38.22 2.12
621 721 1.081108 GCCGCAGACGCCTAGATAG 60.081 63.158 0.00 0.00 38.22 2.08
622 722 2.904676 CGCCGCAGACGCCTAGATA 61.905 63.158 0.00 0.00 38.22 1.98
623 723 4.271816 CGCCGCAGACGCCTAGAT 62.272 66.667 0.00 0.00 38.22 1.98
642 742 4.406069 ACATCATTTTGCGATTGACGAAG 58.594 39.130 0.00 0.00 45.77 3.79
645 745 4.028383 GGTACATCATTTTGCGATTGACG 58.972 43.478 0.00 0.00 45.66 4.35
653 753 5.296813 GGATATCCGGTACATCATTTTGC 57.703 43.478 5.86 0.00 0.00 3.68
674 774 3.349488 TCTCTATGAATACACGCACGG 57.651 47.619 0.00 0.00 0.00 4.94
706 836 5.461407 CAGATGCGGATACTCATACATATGC 59.539 44.000 1.58 0.00 43.42 3.14
707 837 6.567959 ACAGATGCGGATACTCATACATATG 58.432 40.000 0.00 0.00 43.42 1.78
708 838 6.782082 ACAGATGCGGATACTCATACATAT 57.218 37.500 0.00 0.00 43.42 1.78
719 853 5.585820 TTAACACAGTACAGATGCGGATA 57.414 39.130 0.00 0.00 0.00 2.59
782 916 5.621197 TCCATTTGTGTACTCAAATTCCG 57.379 39.130 25.68 17.44 42.88 4.30
841 989 1.003580 CCCTGCTAGCTGAACTTCCAA 59.996 52.381 21.96 0.00 0.00 3.53
844 992 1.827969 TCTCCCTGCTAGCTGAACTTC 59.172 52.381 21.96 0.00 0.00 3.01
962 1119 4.678269 GTGCTGTGCTGCTGTGCG 62.678 66.667 0.00 0.00 35.36 5.34
963 1120 1.909141 CTAGTGCTGTGCTGCTGTGC 61.909 60.000 0.00 2.86 0.00 4.57
989 1146 2.012673 GAGTAGCCATGCTTGGTTCAG 58.987 52.381 19.05 0.00 45.57 3.02
1026 1186 3.202467 GTGAGGACGAGGAGGAGC 58.798 66.667 0.00 0.00 0.00 4.70
1038 1198 1.001248 TAGGGGAAGGGTCGTGAGG 59.999 63.158 0.00 0.00 0.00 3.86
1074 1234 2.675423 AGTAGAGCGCGGTGTGGA 60.675 61.111 18.92 0.00 0.00 4.02
1275 1435 3.669036 CTCGTCGCACTCGGACCTG 62.669 68.421 0.00 0.00 36.13 4.00
1335 1495 3.953775 CCACCAGCGAACCACCCT 61.954 66.667 0.00 0.00 0.00 4.34
1660 1827 3.445096 GGGCATGCTTATTTGTTCTGACT 59.555 43.478 18.92 0.00 0.00 3.41
1757 1929 3.555518 GCCGAAAACTGAATGAACTGAC 58.444 45.455 0.00 0.00 0.00 3.51
1907 2079 2.626780 CGGGCGAGACTCAGACACA 61.627 63.158 2.82 0.00 0.00 3.72
1925 2097 4.123506 GCATAAAAGTGGCTCCTAGAGTC 58.876 47.826 0.00 0.00 34.49 3.36
1927 2099 4.376146 GAGCATAAAAGTGGCTCCTAGAG 58.624 47.826 0.00 0.00 46.35 2.43
1951 2123 3.118000 TCCGTCTCTGGATGTAGCTAGAA 60.118 47.826 0.00 0.00 31.53 2.10
2021 2193 4.098807 ACAATTGTTCTACGGTTTTGGCTT 59.901 37.500 4.92 0.00 0.00 4.35
2089 2266 5.333568 GCATTGGCTGATTTTCACTTTTGTC 60.334 40.000 0.00 0.00 36.96 3.18
2115 2294 1.139853 CTCATGTTGTCCCCTAGAGCC 59.860 57.143 0.00 0.00 0.00 4.70
2125 2304 9.599322 CAGAACACTTAATTTACTCATGTTGTC 57.401 33.333 0.00 0.00 0.00 3.18
2135 2314 6.874134 TGGAGAGAGCAGAACACTTAATTTAC 59.126 38.462 0.00 0.00 0.00 2.01
2152 2331 7.874016 CCAGAGAATATCAGAATTTGGAGAGAG 59.126 40.741 0.00 0.00 0.00 3.20
2170 2349 4.460731 GCCAAAACTTCTAAGCCAGAGAAT 59.539 41.667 0.00 0.00 33.83 2.40
2178 2357 4.068599 ACTCAGAGCCAAAACTTCTAAGC 58.931 43.478 0.00 0.00 0.00 3.09
2294 2476 0.035820 GTTATCGTGGGTTGCTGGGA 60.036 55.000 0.00 0.00 0.00 4.37
2313 2495 9.546428 TCACAACAGACATTACTATGGATATTG 57.454 33.333 0.00 0.00 36.01 1.90
2323 2505 4.955811 TCACCTCACAACAGACATTACT 57.044 40.909 0.00 0.00 0.00 2.24
2325 2507 5.863965 TGAATCACCTCACAACAGACATTA 58.136 37.500 0.00 0.00 0.00 1.90
2334 2516 4.984295 TCTTTCCATGAATCACCTCACAA 58.016 39.130 0.00 0.00 0.00 3.33
2381 2563 7.435068 TCATAGTTCCAAACAAGTTAAGAGC 57.565 36.000 0.00 0.00 0.00 4.09
2405 2587 3.658398 CCAGGAGATGTTGGCACTT 57.342 52.632 0.00 0.00 0.00 3.16
2524 2706 1.668826 TGGGGCTAGTTTCAGACCAT 58.331 50.000 0.00 0.00 46.74 3.55
2525 2707 1.440618 TTGGGGCTAGTTTCAGACCA 58.559 50.000 0.00 0.00 46.74 4.02
2526 2708 2.579410 TTTGGGGCTAGTTTCAGACC 57.421 50.000 0.00 0.00 43.83 3.85
2527 2709 4.844884 ACTATTTGGGGCTAGTTTCAGAC 58.155 43.478 0.00 0.00 0.00 3.51
2528 2710 6.157994 ACATACTATTTGGGGCTAGTTTCAGA 59.842 38.462 0.00 0.00 30.98 3.27
2529 2711 6.260936 CACATACTATTTGGGGCTAGTTTCAG 59.739 42.308 0.00 0.00 30.98 3.02
2530 2712 6.119536 CACATACTATTTGGGGCTAGTTTCA 58.880 40.000 0.00 0.00 30.98 2.69
2531 2713 5.531287 CCACATACTATTTGGGGCTAGTTTC 59.469 44.000 0.00 0.00 29.18 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.