Multiple sequence alignment - TraesCS1D01G172800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G172800 chr1D 100.000 5214 0 0 1 5214 246935909 246941122 0.000000e+00 9629
1 TraesCS1D01G172800 chr1D 77.183 710 114 30 1249 1933 423764013 423764699 2.290000e-98 370
2 TraesCS1D01G172800 chr1B 91.575 2920 134 39 809 3666 331147086 331144217 0.000000e+00 3927
3 TraesCS1D01G172800 chr1B 90.351 912 65 13 3769 4665 331144108 331143205 0.000000e+00 1175
4 TraesCS1D01G172800 chr1B 77.151 709 117 29 1250 1933 573215957 573216645 2.290000e-98 370
5 TraesCS1D01G172800 chr1B 84.874 238 24 10 4664 4894 331142753 331142521 4.060000e-56 230
6 TraesCS1D01G172800 chr1A 91.295 2757 130 50 1973 4682 300859071 300856378 0.000000e+00 3661
7 TraesCS1D01G172800 chr1A 94.133 1176 55 5 809 1979 300860259 300859093 0.000000e+00 1777
8 TraesCS1D01G172800 chr1A 77.350 702 110 34 1250 1933 520122816 520123486 2.290000e-98 370
9 TraesCS1D01G172800 chr4B 91.033 736 60 4 78 809 489395605 489396338 0.000000e+00 989
10 TraesCS1D01G172800 chr2D 85.104 772 107 8 41 808 17619777 17619010 0.000000e+00 782
11 TraesCS1D01G172800 chr2D 83.147 807 118 13 3 807 17647563 17646773 0.000000e+00 721
12 TraesCS1D01G172800 chr5D 83.272 813 119 14 4 806 302328469 302327664 0.000000e+00 732
13 TraesCS1D01G172800 chr7B 82.704 821 117 21 3 809 677764590 677765399 0.000000e+00 706
14 TraesCS1D01G172800 chr7B 85.354 198 16 10 4576 4770 213252322 213252509 5.330000e-45 193
15 TraesCS1D01G172800 chr4A 81.436 808 129 17 3 797 101941048 101940249 4.400000e-180 641
16 TraesCS1D01G172800 chr6A 80.276 725 120 19 7 721 74924916 74925627 4.630000e-145 525
17 TraesCS1D01G172800 chr6A 92.754 69 5 0 2012 2080 39180116 39180048 3.320000e-17 100
18 TraesCS1D01G172800 chr6D 80.911 461 65 13 1635 2090 34999342 34998900 5.000000e-90 342
19 TraesCS1D01G172800 chr6D 88.983 118 11 1 1253 1370 34999787 34999672 1.510000e-30 145
20 TraesCS1D01G172800 chr3B 79.211 380 55 13 410 779 721922632 721922267 5.220000e-60 243
21 TraesCS1D01G172800 chr7D 86.982 169 11 8 4605 4770 236644840 236645000 4.150000e-41 180
22 TraesCS1D01G172800 chr6B 87.200 125 13 2 1253 1376 72379515 72379393 7.040000e-29 139
23 TraesCS1D01G172800 chr6B 87.379 103 7 4 1993 2090 72378499 72378398 4.270000e-21 113
24 TraesCS1D01G172800 chr7A 75.600 250 40 13 4529 4773 710841485 710841718 2.570000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G172800 chr1D 246935909 246941122 5213 False 9629.000000 9629 100.000000 1 5214 1 chr1D.!!$F1 5213
1 TraesCS1D01G172800 chr1D 423764013 423764699 686 False 370.000000 370 77.183000 1249 1933 1 chr1D.!!$F2 684
2 TraesCS1D01G172800 chr1B 331142521 331147086 4565 True 1777.333333 3927 88.933333 809 4894 3 chr1B.!!$R1 4085
3 TraesCS1D01G172800 chr1B 573215957 573216645 688 False 370.000000 370 77.151000 1250 1933 1 chr1B.!!$F1 683
4 TraesCS1D01G172800 chr1A 300856378 300860259 3881 True 2719.000000 3661 92.714000 809 4682 2 chr1A.!!$R1 3873
5 TraesCS1D01G172800 chr1A 520122816 520123486 670 False 370.000000 370 77.350000 1250 1933 1 chr1A.!!$F1 683
6 TraesCS1D01G172800 chr4B 489395605 489396338 733 False 989.000000 989 91.033000 78 809 1 chr4B.!!$F1 731
7 TraesCS1D01G172800 chr2D 17619010 17619777 767 True 782.000000 782 85.104000 41 808 1 chr2D.!!$R1 767
8 TraesCS1D01G172800 chr2D 17646773 17647563 790 True 721.000000 721 83.147000 3 807 1 chr2D.!!$R2 804
9 TraesCS1D01G172800 chr5D 302327664 302328469 805 True 732.000000 732 83.272000 4 806 1 chr5D.!!$R1 802
10 TraesCS1D01G172800 chr7B 677764590 677765399 809 False 706.000000 706 82.704000 3 809 1 chr7B.!!$F2 806
11 TraesCS1D01G172800 chr4A 101940249 101941048 799 True 641.000000 641 81.436000 3 797 1 chr4A.!!$R1 794
12 TraesCS1D01G172800 chr6A 74924916 74925627 711 False 525.000000 525 80.276000 7 721 1 chr6A.!!$F1 714
13 TraesCS1D01G172800 chr6D 34998900 34999787 887 True 243.500000 342 84.947000 1253 2090 2 chr6D.!!$R1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.179111 CAACATCTTCTCGCGGGCTA 60.179 55.0 6.13 0.0 0.00 3.93 F
573 574 0.251341 GCCTTCTGGGAAGAGGCAAA 60.251 55.0 8.63 0.0 44.42 3.68 F
2090 2246 0.165944 CGCCGCCAAGAAGTAAACAG 59.834 55.0 0.00 0.0 0.00 3.16 F
3184 3385 0.107945 GGCCCTACTCTTGCTGTCAG 60.108 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2123 0.110688 CAGCAATCGGTTCACACACG 60.111 55.0 0.00 0.0 0.00 4.49 R
2171 2333 0.259356 TGACCGGGGAGTTGGTTTTT 59.741 50.0 6.32 0.0 38.99 1.94 R
3646 3852 0.037232 ACACTGACGAAGCCCTAAGC 60.037 55.0 0.00 0.0 44.25 3.09 R
5031 5743 0.036858 GTCCTGGAGCAGAGGAACAC 60.037 60.0 0.00 0.0 41.42 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.202623 GCGCTAGGTGACCGTCAG 60.203 66.667 0.08 0.00 0.00 3.51
56 57 3.433319 GCGACGAGCCAGATAGGA 58.567 61.111 0.00 0.00 41.22 2.94
58 59 0.315568 GCGACGAGCCAGATAGGATT 59.684 55.000 0.00 0.00 41.22 3.01
74 75 1.153168 ATTTCCTGGCGATGGACCG 60.153 57.895 0.00 0.00 32.65 4.79
209 210 2.609534 ATCTGGCTTGCCCTGCTCA 61.610 57.895 9.35 0.00 32.89 4.26
307 308 1.679944 CCCGAGACCATGCAACATCTT 60.680 52.381 0.00 0.00 0.00 2.40
318 319 0.179111 CAACATCTTCTCGCGGGCTA 60.179 55.000 6.13 0.00 0.00 3.93
332 333 2.058595 GGCTACTCCTTCTCCCGCA 61.059 63.158 0.00 0.00 0.00 5.69
475 476 1.524621 CGCTTCCATCGCCATCCTT 60.525 57.895 0.00 0.00 0.00 3.36
492 493 2.373836 TCCTTACTGCTTGGTGGCTTTA 59.626 45.455 0.00 0.00 0.00 1.85
560 561 3.127533 GCGCCGTCAATGCCTTCT 61.128 61.111 0.00 0.00 0.00 2.85
573 574 0.251341 GCCTTCTGGGAAGAGGCAAA 60.251 55.000 8.63 0.00 44.42 3.68
575 576 2.812658 CCTTCTGGGAAGAGGCAAAAT 58.187 47.619 8.64 0.00 37.23 1.82
647 652 1.384191 CCTAGGGCTTTTGGTGGCT 59.616 57.895 0.00 0.00 0.00 4.75
687 693 0.882042 CATGCGTCCAGGCTATCCAC 60.882 60.000 0.00 0.00 33.74 4.02
730 739 0.839946 TTGGCTAGCCCCATCTCTTC 59.160 55.000 30.81 2.16 34.21 2.87
753 769 9.607285 CTTCGTAACTTATTTGTTATGCAACTT 57.393 29.630 0.00 0.00 38.56 2.66
789 805 1.401552 TGCAATGATACGCAAGCCTTC 59.598 47.619 0.00 0.00 45.62 3.46
791 807 2.872245 GCAATGATACGCAAGCCTTCTA 59.128 45.455 0.00 0.00 45.62 2.10
836 852 6.102663 AGAAGACGAGATCAATGATTCGTTT 58.897 36.000 23.37 18.55 45.23 3.60
869 885 2.811410 ACACTGGGTTGTCTATACGGA 58.189 47.619 0.00 0.00 0.00 4.69
870 886 3.371965 ACACTGGGTTGTCTATACGGAT 58.628 45.455 0.00 0.00 0.00 4.18
871 887 4.539726 ACACTGGGTTGTCTATACGGATA 58.460 43.478 0.00 0.00 0.00 2.59
872 888 4.340381 ACACTGGGTTGTCTATACGGATAC 59.660 45.833 0.00 0.00 0.00 2.24
936 952 1.359475 GAGACGCCGCCTACTTAGG 59.641 63.158 0.00 0.00 46.42 2.69
960 976 2.030412 CTGGCCACAGTACGTGCA 59.970 61.111 0.00 0.00 44.91 4.57
1016 1032 1.234821 GAAATGGACAAGCACGGTCA 58.765 50.000 5.06 0.00 37.00 4.02
1057 1073 1.827789 CTCCTCCTCTGCCTCTCCG 60.828 68.421 0.00 0.00 0.00 4.63
1148 1164 1.066136 GAAGTCCGACCAAGTAACGC 58.934 55.000 0.00 0.00 0.00 4.84
1401 1451 4.156190 CAGCTTCTCATGCAAGAATTCTGT 59.844 41.667 9.17 0.00 34.85 3.41
1544 1613 4.461119 AGGCGGACCTCATCTTCA 57.539 55.556 0.00 0.00 46.34 3.02
1623 1737 1.872197 TTGGCTGCAATACCAACCGC 61.872 55.000 10.60 0.00 40.98 5.68
1828 1950 2.047560 GGAAAGTACGCCGCCACT 60.048 61.111 0.00 0.00 0.00 4.00
1938 2060 1.363744 GAGGATTTCACGGTGAGCAG 58.636 55.000 11.14 0.00 0.00 4.24
1971 2123 3.021788 GAGAGCGCACGATCGAGC 61.022 66.667 25.00 25.00 35.44 5.03
2090 2246 0.165944 CGCCGCCAAGAAGTAAACAG 59.834 55.000 0.00 0.00 0.00 3.16
2113 2269 3.335579 ACTGCACCGTCCTCTTAAATTC 58.664 45.455 0.00 0.00 0.00 2.17
2120 2281 4.184629 CCGTCCTCTTAAATTCCTCAGTG 58.815 47.826 0.00 0.00 0.00 3.66
2151 2312 2.046864 GCTTCCCGGGGCTTTCTTC 61.047 63.158 23.50 0.00 0.00 2.87
2152 2313 1.378646 CTTCCCGGGGCTTTCTTCC 60.379 63.158 23.50 0.00 0.00 3.46
2350 2512 3.279434 GTTGACTCTTTGACCCTTGTGT 58.721 45.455 0.00 0.00 0.00 3.72
2373 2535 3.819368 TGTCTCATTTCCTTTGCTGACA 58.181 40.909 0.00 0.00 0.00 3.58
2617 2780 3.117963 AGAAGCTCAAGATCATCCCCAAG 60.118 47.826 0.00 0.00 0.00 3.61
2671 2834 0.581053 GCTCGCTTTCATGCTCTAGC 59.419 55.000 0.00 0.00 42.50 3.42
2677 2840 3.000724 CGCTTTCATGCTCTAGCTTACAC 59.999 47.826 3.26 0.00 42.66 2.90
2678 2841 3.311048 GCTTTCATGCTCTAGCTTACACC 59.689 47.826 3.26 0.00 42.66 4.16
2679 2842 3.543680 TTCATGCTCTAGCTTACACCC 57.456 47.619 3.26 0.00 42.66 4.61
2682 2845 0.902531 TGCTCTAGCTTACACCCACC 59.097 55.000 3.26 0.00 42.66 4.61
2684 2847 1.568504 CTCTAGCTTACACCCACCCA 58.431 55.000 0.00 0.00 0.00 4.51
2811 2990 2.834618 GCGCGGGATCCCATGAAAC 61.835 63.158 30.42 10.72 35.37 2.78
2826 3005 4.023450 CCATGAAACGATGGATGGATCTTG 60.023 45.833 0.00 0.00 45.24 3.02
2990 3184 4.695455 GGTGACTGCATTGCTTTTACTCTA 59.305 41.667 10.49 0.00 0.00 2.43
2995 3189 5.065218 ACTGCATTGCTTTTACTCTATTCCG 59.935 40.000 10.49 0.00 0.00 4.30
3003 3197 4.672587 TTTACTCTATTCCGCTGCATCT 57.327 40.909 0.00 0.00 0.00 2.90
3004 3198 2.522836 ACTCTATTCCGCTGCATCTG 57.477 50.000 0.00 0.00 0.00 2.90
3005 3199 1.146637 CTCTATTCCGCTGCATCTGC 58.853 55.000 0.00 0.00 42.50 4.26
3029 3230 6.515696 GCATTGTTTTTACTCTCTTCCAGCTT 60.516 38.462 0.00 0.00 0.00 3.74
3034 3235 7.719633 TGTTTTTACTCTCTTCCAGCTTGTAAT 59.280 33.333 0.00 0.00 0.00 1.89
3037 3238 9.787435 TTTTACTCTCTTCCAGCTTGTAATAAA 57.213 29.630 0.00 0.00 0.00 1.40
3106 3307 5.750524 TGCCATAATAAGCTTACTGGTTGA 58.249 37.500 22.82 11.51 37.56 3.18
3165 3366 6.202379 CACATCCACTCATGCTTACTAGAATG 59.798 42.308 0.00 0.00 38.60 2.67
3180 3381 1.211457 AGAATGGCCCTACTCTTGCTG 59.789 52.381 0.00 0.00 0.00 4.41
3181 3382 0.995024 AATGGCCCTACTCTTGCTGT 59.005 50.000 0.00 0.00 0.00 4.40
3184 3385 0.107945 GGCCCTACTCTTGCTGTCAG 60.108 60.000 0.00 0.00 0.00 3.51
3185 3386 0.610687 GCCCTACTCTTGCTGTCAGT 59.389 55.000 0.93 0.00 0.00 3.41
3187 3388 2.933056 GCCCTACTCTTGCTGTCAGTTC 60.933 54.545 0.93 0.00 0.00 3.01
3188 3389 2.300152 CCCTACTCTTGCTGTCAGTTCA 59.700 50.000 0.93 0.00 0.00 3.18
3189 3390 3.244215 CCCTACTCTTGCTGTCAGTTCAA 60.244 47.826 0.93 0.00 0.00 2.69
3190 3391 3.743396 CCTACTCTTGCTGTCAGTTCAAC 59.257 47.826 0.93 0.00 0.00 3.18
3191 3392 2.205074 ACTCTTGCTGTCAGTTCAACG 58.795 47.619 0.93 0.00 0.00 4.10
3192 3393 1.528586 CTCTTGCTGTCAGTTCAACGG 59.471 52.381 0.93 0.00 0.00 4.44
3193 3394 1.138069 TCTTGCTGTCAGTTCAACGGA 59.862 47.619 0.93 0.00 0.00 4.69
3194 3395 1.528586 CTTGCTGTCAGTTCAACGGAG 59.471 52.381 0.93 0.00 0.00 4.63
3195 3396 0.880278 TGCTGTCAGTTCAACGGAGC 60.880 55.000 0.93 0.00 0.00 4.70
3196 3397 0.601311 GCTGTCAGTTCAACGGAGCT 60.601 55.000 0.93 0.00 34.61 4.09
3209 3410 1.135915 ACGGAGCTGTCAGATTAGCAG 59.864 52.381 3.32 0.00 42.29 4.24
3242 3443 1.671880 GACGAGTAAGCAACCGCGAC 61.672 60.000 8.23 0.00 45.49 5.19
3253 3454 1.201647 CAACCGCGACTAGGAGAGAAA 59.798 52.381 8.23 0.00 0.00 2.52
3303 3504 2.733858 GCTGTTGTTCAGAAAAACCGCA 60.734 45.455 21.67 2.19 46.27 5.69
3310 3511 2.218603 TCAGAAAAACCGCAGTCCTTC 58.781 47.619 0.00 0.00 0.00 3.46
3312 3513 2.357637 CAGAAAAACCGCAGTCCTTCAA 59.642 45.455 0.00 0.00 0.00 2.69
3426 3628 4.083802 GCGCAAGTGACAACTCTATCTTTT 60.084 41.667 0.30 0.00 34.77 2.27
3427 3629 5.612865 CGCAAGTGACAACTCTATCTTTTC 58.387 41.667 0.00 0.00 34.77 2.29
3524 3729 4.040339 TCTCACATGTACATGGTCAACACT 59.960 41.667 33.32 12.26 42.91 3.55
3527 3732 4.275689 CACATGTACATGGTCAACACTGTT 59.724 41.667 33.32 10.45 42.91 3.16
3548 3753 5.184096 TGTTGAGTGAAACAAGCCACTTTAA 59.816 36.000 0.00 0.00 43.02 1.52
3571 3776 4.229096 CTGAAACGTGCATGTTGCTTAAT 58.771 39.130 26.52 10.75 45.31 1.40
3590 3795 7.086376 GCTTAATCTGCAGATGTTCTTTTCAA 58.914 34.615 29.34 11.03 34.49 2.69
3637 3843 7.025365 TCCACTATATATAGCTTTAACACGCG 58.975 38.462 18.00 3.53 33.68 6.01
3641 3847 9.499585 ACTATATATAGCTTTAACACGCGTATG 57.500 33.333 13.44 2.47 33.68 2.39
3642 3848 7.751047 ATATATAGCTTTAACACGCGTATGG 57.249 36.000 13.44 1.44 0.00 2.74
3646 3852 2.906161 GCTTTAACACGCGTATGGTTTG 59.094 45.455 13.44 0.00 0.00 2.93
3655 3861 2.017113 GCGTATGGTTTGCTTAGGGCT 61.017 52.381 0.00 0.00 42.39 5.19
3666 3872 1.203994 GCTTAGGGCTTCGTCAGTGTA 59.796 52.381 0.00 0.00 38.06 2.90
3667 3873 2.877335 CTTAGGGCTTCGTCAGTGTAC 58.123 52.381 0.00 0.00 0.00 2.90
3668 3874 1.913778 TAGGGCTTCGTCAGTGTACA 58.086 50.000 0.00 0.00 0.00 2.90
3671 3877 1.419374 GGCTTCGTCAGTGTACAGTG 58.581 55.000 22.44 22.44 0.00 3.66
3672 3878 1.269621 GGCTTCGTCAGTGTACAGTGT 60.270 52.381 26.07 0.00 33.58 3.55
3674 3880 2.798499 GCTTCGTCAGTGTACAGTGTGT 60.798 50.000 26.07 0.00 33.58 3.72
3677 3883 1.202371 CGTCAGTGTACAGTGTGTGGT 60.202 52.381 26.07 0.00 33.58 4.16
3678 3884 2.201732 GTCAGTGTACAGTGTGTGGTG 58.798 52.381 26.07 3.42 33.58 4.17
3679 3885 1.828595 TCAGTGTACAGTGTGTGGTGT 59.171 47.619 26.07 0.00 33.58 4.16
3680 3886 1.933181 CAGTGTACAGTGTGTGGTGTG 59.067 52.381 20.58 0.00 0.00 3.82
3682 3888 2.761767 AGTGTACAGTGTGTGGTGTGTA 59.238 45.455 5.88 0.00 0.00 2.90
3683 3889 3.120792 GTGTACAGTGTGTGGTGTGTAG 58.879 50.000 5.88 0.00 0.00 2.74
3684 3890 3.025262 TGTACAGTGTGTGGTGTGTAGA 58.975 45.455 5.88 0.00 0.00 2.59
3687 3893 4.150897 ACAGTGTGTGGTGTGTAGAAAT 57.849 40.909 0.00 0.00 0.00 2.17
3688 3894 5.284861 ACAGTGTGTGGTGTGTAGAAATA 57.715 39.130 0.00 0.00 0.00 1.40
3689 3895 5.865085 ACAGTGTGTGGTGTGTAGAAATAT 58.135 37.500 0.00 0.00 0.00 1.28
3690 3896 5.932303 ACAGTGTGTGGTGTGTAGAAATATC 59.068 40.000 0.00 0.00 0.00 1.63
3691 3897 5.062183 CAGTGTGTGGTGTGTAGAAATATCG 59.938 44.000 0.00 0.00 0.00 2.92
3692 3898 3.930229 TGTGTGGTGTGTAGAAATATCGC 59.070 43.478 0.00 0.00 0.00 4.58
3693 3899 4.181578 GTGTGGTGTGTAGAAATATCGCT 58.818 43.478 0.00 0.00 0.00 4.93
3694 3900 4.032900 GTGTGGTGTGTAGAAATATCGCTG 59.967 45.833 0.00 0.00 0.00 5.18
3695 3901 3.001330 GTGGTGTGTAGAAATATCGCTGC 59.999 47.826 0.00 0.00 0.00 5.25
3696 3902 2.544267 GGTGTGTAGAAATATCGCTGCC 59.456 50.000 0.00 0.00 0.00 4.85
3697 3903 3.458189 GTGTGTAGAAATATCGCTGCCT 58.542 45.455 0.00 0.00 0.00 4.75
3698 3904 3.246226 GTGTGTAGAAATATCGCTGCCTG 59.754 47.826 0.00 0.00 0.00 4.85
3699 3905 3.118775 TGTGTAGAAATATCGCTGCCTGT 60.119 43.478 0.00 0.00 0.00 4.00
3700 3906 4.098807 TGTGTAGAAATATCGCTGCCTGTA 59.901 41.667 0.00 0.00 0.00 2.74
3701 3907 4.444720 GTGTAGAAATATCGCTGCCTGTAC 59.555 45.833 0.00 0.00 0.00 2.90
3702 3908 2.743938 AGAAATATCGCTGCCTGTACG 58.256 47.619 0.00 0.00 0.00 3.67
3703 3909 2.361119 AGAAATATCGCTGCCTGTACGA 59.639 45.455 0.00 0.00 40.53 3.43
3707 3913 1.605753 ATCGCTGCCTGTACGATAGA 58.394 50.000 0.00 0.00 44.16 1.98
3708 3914 0.661552 TCGCTGCCTGTACGATAGAC 59.338 55.000 0.00 0.00 41.38 2.59
3709 3915 0.663688 CGCTGCCTGTACGATAGACT 59.336 55.000 0.00 0.00 41.38 3.24
3710 3916 1.871676 CGCTGCCTGTACGATAGACTA 59.128 52.381 0.00 0.00 41.38 2.59
3711 3917 2.289820 CGCTGCCTGTACGATAGACTAA 59.710 50.000 0.00 0.00 41.38 2.24
3712 3918 3.058155 CGCTGCCTGTACGATAGACTAAT 60.058 47.826 0.00 0.00 41.38 1.73
3713 3919 4.230657 GCTGCCTGTACGATAGACTAATG 58.769 47.826 0.00 0.00 41.38 1.90
3714 3920 4.261656 GCTGCCTGTACGATAGACTAATGT 60.262 45.833 0.00 0.00 41.38 2.71
3718 3924 6.319405 TGCCTGTACGATAGACTAATGTTGTA 59.681 38.462 0.00 0.00 41.38 2.41
3719 3925 6.636044 GCCTGTACGATAGACTAATGTTGTAC 59.364 42.308 0.00 5.61 41.38 2.90
3722 3928 9.861138 CTGTACGATAGACTAATGTTGTACTAC 57.139 37.037 11.09 0.05 41.38 2.73
3739 3945 4.437772 ACTACGTTCTTTAGACTGAGCC 57.562 45.455 0.00 0.00 0.00 4.70
3745 3951 4.156190 CGTTCTTTAGACTGAGCCTAGTGA 59.844 45.833 0.00 0.00 0.00 3.41
3746 3952 5.163602 CGTTCTTTAGACTGAGCCTAGTGAT 60.164 44.000 0.00 0.00 0.00 3.06
3747 3953 6.626181 CGTTCTTTAGACTGAGCCTAGTGATT 60.626 42.308 0.00 0.00 0.00 2.57
3749 3955 7.956328 TCTTTAGACTGAGCCTAGTGATTTA 57.044 36.000 0.00 0.00 0.00 1.40
3834 4080 1.953686 TGGGTGCAAAAGCTCAAGTAC 59.046 47.619 0.00 0.00 0.00 2.73
3848 4094 4.562552 GCTCAAGTACTCAAGCCTTTCTCT 60.563 45.833 15.31 0.00 0.00 3.10
3851 4097 5.047660 TCAAGTACTCAAGCCTTTCTCTCTC 60.048 44.000 0.00 0.00 0.00 3.20
4021 4271 3.087031 CGTCAGGTCCTACAAGAACCTA 58.913 50.000 0.00 0.00 41.48 3.08
4039 4289 6.674419 AGAACCTACATTTCTACTGGATCCTT 59.326 38.462 14.23 2.24 31.28 3.36
4064 4314 1.373748 GGCCACTTCGTAAGTCGCA 60.374 57.895 15.08 0.00 45.79 5.10
4222 4475 0.685785 CAGCCAGCTAGGTGAGGAGA 60.686 60.000 23.31 0.00 40.61 3.71
4223 4476 0.686112 AGCCAGCTAGGTGAGGAGAC 60.686 60.000 23.31 5.41 40.61 3.36
4226 4479 1.076632 AGCTAGGTGAGGAGACCCG 60.077 63.158 0.00 0.00 36.56 5.28
4228 4481 1.613610 CTAGGTGAGGAGACCCGGA 59.386 63.158 0.73 0.00 36.56 5.14
4229 4482 0.186386 CTAGGTGAGGAGACCCGGAT 59.814 60.000 0.73 0.00 36.56 4.18
4230 4483 1.424302 CTAGGTGAGGAGACCCGGATA 59.576 57.143 0.73 0.00 36.56 2.59
4269 4522 4.630505 GTCGGATAGGAAAAGGAAACTGAC 59.369 45.833 0.00 0.00 42.68 3.51
4292 4545 9.095065 TGACGATAGAAGTATAAAAAGAAAGGC 57.905 33.333 0.00 0.00 41.38 4.35
4379 4634 5.247507 TCGTCCGTTTTATTCTCCGAATA 57.752 39.130 0.00 0.00 0.00 1.75
4436 4691 9.758651 AGTTTTAGTGTGAAATTTATGTTTCCC 57.241 29.630 0.00 0.00 37.31 3.97
4441 4696 8.887036 AGTGTGAAATTTATGTTTCCCTTTTC 57.113 30.769 0.00 0.00 37.31 2.29
4471 4726 9.289303 AGATATTTGTAAAAATGCGATGTTCAC 57.711 29.630 0.78 0.00 0.00 3.18
4590 4846 2.030363 TGCAGTAAAATTTGAGGCACCG 60.030 45.455 0.00 0.00 0.00 4.94
4633 4889 7.359765 GCATTCAAAATTGTTCATCTCCAACAG 60.360 37.037 0.00 0.00 35.22 3.16
4658 4914 3.592898 CCCAAAATAGGGCACTTCAAC 57.407 47.619 0.00 0.00 43.10 3.18
4659 4915 2.896685 CCCAAAATAGGGCACTTCAACA 59.103 45.455 0.00 0.00 43.10 3.33
4660 4916 3.515104 CCCAAAATAGGGCACTTCAACAT 59.485 43.478 0.00 0.00 43.10 2.71
4661 4917 4.497300 CCAAAATAGGGCACTTCAACATG 58.503 43.478 0.00 0.00 0.00 3.21
4662 4918 3.874392 AAATAGGGCACTTCAACATGC 57.126 42.857 0.00 0.00 41.29 4.06
4663 4919 2.512692 ATAGGGCACTTCAACATGCA 57.487 45.000 0.00 0.00 43.93 3.96
4671 5382 5.412286 GGGCACTTCAACATGCAAATATTTT 59.588 36.000 0.00 0.00 43.93 1.82
4705 5416 4.687483 CCAAACATTGCAGAATTCACTTCC 59.313 41.667 8.44 0.00 34.11 3.46
4707 5418 5.534207 AACATTGCAGAATTCACTTCCAA 57.466 34.783 8.44 3.84 34.11 3.53
4743 5454 7.972527 TCAAAGTTTTGAACATCCAAACATTG 58.027 30.769 14.00 14.00 43.62 2.82
4744 5455 5.989551 AGTTTTGAACATCCAAACATTGC 57.010 34.783 9.00 0.00 35.95 3.56
4745 5456 5.426504 AGTTTTGAACATCCAAACATTGCA 58.573 33.333 9.00 0.00 35.95 4.08
4746 5457 6.056884 AGTTTTGAACATCCAAACATTGCAT 58.943 32.000 9.00 0.00 35.95 3.96
4747 5458 7.215789 AGTTTTGAACATCCAAACATTGCATA 58.784 30.769 9.00 0.00 35.95 3.14
4748 5459 7.385752 AGTTTTGAACATCCAAACATTGCATAG 59.614 33.333 9.00 0.00 35.95 2.23
4750 5461 6.778834 TGAACATCCAAACATTGCATAGAT 57.221 33.333 0.00 0.00 0.00 1.98
4751 5462 7.172868 TGAACATCCAAACATTGCATAGATT 57.827 32.000 0.00 0.00 0.00 2.40
4752 5463 8.291191 TGAACATCCAAACATTGCATAGATTA 57.709 30.769 0.00 0.00 0.00 1.75
4753 5464 8.747471 TGAACATCCAAACATTGCATAGATTAA 58.253 29.630 0.00 0.00 0.00 1.40
4755 5466 8.931385 ACATCCAAACATTGCATAGATTAAAC 57.069 30.769 0.00 0.00 0.00 2.01
4756 5467 7.701924 ACATCCAAACATTGCATAGATTAAACG 59.298 33.333 0.00 0.00 0.00 3.60
4757 5468 7.384439 TCCAAACATTGCATAGATTAAACGA 57.616 32.000 0.00 0.00 0.00 3.85
4759 5470 7.753132 TCCAAACATTGCATAGATTAAACGAAC 59.247 33.333 0.00 0.00 0.00 3.95
4760 5471 7.540400 CCAAACATTGCATAGATTAAACGAACA 59.460 33.333 0.00 0.00 0.00 3.18
4761 5472 9.075519 CAAACATTGCATAGATTAAACGAACAT 57.924 29.630 0.00 0.00 0.00 2.71
4765 5476 6.993786 TGCATAGATTAAACGAACATCCAA 57.006 33.333 0.00 0.00 0.00 3.53
4766 5477 7.384439 TGCATAGATTAAACGAACATCCAAA 57.616 32.000 0.00 0.00 0.00 3.28
4767 5478 7.247728 TGCATAGATTAAACGAACATCCAAAC 58.752 34.615 0.00 0.00 0.00 2.93
4769 5480 8.609176 GCATAGATTAAACGAACATCCAAACTA 58.391 33.333 0.00 0.00 0.00 2.24
4775 5487 3.323243 ACGAACATCCAAACTAACTCCG 58.677 45.455 0.00 0.00 0.00 4.63
4790 5502 4.078516 CCGACGGACAACCTCCCC 62.079 72.222 8.64 0.00 35.21 4.81
4799 5511 0.036306 ACAACCTCCCCGTCAATGTC 59.964 55.000 0.00 0.00 0.00 3.06
4825 5537 1.378646 TCGTCACTCTCCTCGCCAT 60.379 57.895 0.00 0.00 0.00 4.40
4851 5563 2.745884 CGCGCAAGGTCATCCCAA 60.746 61.111 8.75 0.00 34.66 4.12
4856 5568 1.133025 CGCAAGGTCATCCCAATCAAC 59.867 52.381 0.00 0.00 34.66 3.18
4861 5573 1.404986 GGTCATCCCAATCAACGTCGA 60.405 52.381 0.00 0.00 0.00 4.20
4869 5581 2.139917 CAATCAACGTCGAAACCCTCA 58.860 47.619 0.00 0.00 0.00 3.86
4873 5585 0.316204 AACGTCGAAACCCTCATCGT 59.684 50.000 0.00 0.00 39.91 3.73
4879 5591 1.749634 CGAAACCCTCATCGTAGGACT 59.250 52.381 3.28 0.00 39.15 3.85
4881 5593 1.777941 AACCCTCATCGTAGGACTCC 58.222 55.000 3.28 0.00 39.15 3.85
4882 5594 0.629596 ACCCTCATCGTAGGACTCCA 59.370 55.000 0.00 0.00 39.15 3.86
4885 5597 2.489985 CCCTCATCGTAGGACTCCATCT 60.490 54.545 0.00 0.00 39.15 2.90
4888 5600 3.885901 CTCATCGTAGGACTCCATCTTCA 59.114 47.826 0.00 0.00 0.00 3.02
4894 5606 1.203364 AGGACTCCATCTTCACCACCT 60.203 52.381 0.00 0.00 0.00 4.00
4895 5607 2.044492 AGGACTCCATCTTCACCACCTA 59.956 50.000 0.00 0.00 0.00 3.08
4896 5608 3.041946 GGACTCCATCTTCACCACCTAT 58.958 50.000 0.00 0.00 0.00 2.57
4897 5609 3.181461 GGACTCCATCTTCACCACCTATG 60.181 52.174 0.00 0.00 0.00 2.23
4898 5610 3.706594 GACTCCATCTTCACCACCTATGA 59.293 47.826 0.00 0.00 0.00 2.15
4899 5611 4.104086 ACTCCATCTTCACCACCTATGAA 58.896 43.478 0.00 0.00 34.89 2.57
4914 5626 4.785301 CCTATGAAGGCCATTCTTCTTGA 58.215 43.478 5.01 0.00 42.54 3.02
4915 5627 4.578105 CCTATGAAGGCCATTCTTCTTGAC 59.422 45.833 5.01 0.00 42.54 3.18
4916 5628 2.795329 TGAAGGCCATTCTTCTTGACC 58.205 47.619 5.01 0.00 42.54 4.02
4917 5629 2.376518 TGAAGGCCATTCTTCTTGACCT 59.623 45.455 5.01 0.00 42.54 3.85
4918 5630 2.797177 AGGCCATTCTTCTTGACCTC 57.203 50.000 5.01 0.00 0.00 3.85
4919 5631 1.283321 AGGCCATTCTTCTTGACCTCC 59.717 52.381 5.01 0.00 0.00 4.30
4920 5632 1.373570 GCCATTCTTCTTGACCTCCG 58.626 55.000 0.00 0.00 0.00 4.63
4921 5633 1.373570 CCATTCTTCTTGACCTCCGC 58.626 55.000 0.00 0.00 0.00 5.54
4922 5634 1.373570 CATTCTTCTTGACCTCCGCC 58.626 55.000 0.00 0.00 0.00 6.13
4923 5635 1.065854 CATTCTTCTTGACCTCCGCCT 60.066 52.381 0.00 0.00 0.00 5.52
4924 5636 1.056660 TTCTTCTTGACCTCCGCCTT 58.943 50.000 0.00 0.00 0.00 4.35
4925 5637 0.608640 TCTTCTTGACCTCCGCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
4926 5638 0.610687 CTTCTTGACCTCCGCCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
4927 5639 1.002544 CTTCTTGACCTCCGCCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
4928 5640 0.608640 TCTTGACCTCCGCCTTCTTC 59.391 55.000 0.00 0.00 0.00 2.87
4929 5641 0.610687 CTTGACCTCCGCCTTCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
4930 5642 1.002544 CTTGACCTCCGCCTTCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
4931 5643 0.608640 TGACCTCCGCCTTCTTCTTC 59.391 55.000 0.00 0.00 0.00 2.87
4932 5644 0.899019 GACCTCCGCCTTCTTCTTCT 59.101 55.000 0.00 0.00 0.00 2.85
4933 5645 1.276705 GACCTCCGCCTTCTTCTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
4934 5646 1.276705 ACCTCCGCCTTCTTCTTCTTC 59.723 52.381 0.00 0.00 0.00 2.87
4935 5647 1.552792 CCTCCGCCTTCTTCTTCTTCT 59.447 52.381 0.00 0.00 0.00 2.85
4936 5648 2.418060 CCTCCGCCTTCTTCTTCTTCTC 60.418 54.545 0.00 0.00 0.00 2.87
4937 5649 2.232452 CTCCGCCTTCTTCTTCTTCTCA 59.768 50.000 0.00 0.00 0.00 3.27
4938 5650 2.834549 TCCGCCTTCTTCTTCTTCTCAT 59.165 45.455 0.00 0.00 0.00 2.90
4939 5651 2.935201 CCGCCTTCTTCTTCTTCTCATG 59.065 50.000 0.00 0.00 0.00 3.07
4940 5652 3.368843 CCGCCTTCTTCTTCTTCTCATGA 60.369 47.826 0.00 0.00 0.00 3.07
4941 5653 4.440880 CGCCTTCTTCTTCTTCTCATGAT 58.559 43.478 0.00 0.00 0.00 2.45
4942 5654 4.507388 CGCCTTCTTCTTCTTCTCATGATC 59.493 45.833 0.00 0.00 0.00 2.92
4943 5655 5.426504 GCCTTCTTCTTCTTCTCATGATCA 58.573 41.667 0.00 0.00 0.00 2.92
4944 5656 5.294060 GCCTTCTTCTTCTTCTCATGATCAC 59.706 44.000 0.00 0.00 0.00 3.06
4945 5657 6.404708 CCTTCTTCTTCTTCTCATGATCACA 58.595 40.000 0.00 0.00 0.00 3.58
4946 5658 6.313411 CCTTCTTCTTCTTCTCATGATCACAC 59.687 42.308 0.00 0.00 0.00 3.82
4947 5659 6.602410 TCTTCTTCTTCTCATGATCACACT 57.398 37.500 0.00 0.00 0.00 3.55
4948 5660 7.002250 TCTTCTTCTTCTCATGATCACACTT 57.998 36.000 0.00 0.00 0.00 3.16
4949 5661 7.095910 TCTTCTTCTTCTCATGATCACACTTC 58.904 38.462 0.00 0.00 0.00 3.01
4950 5662 5.728471 TCTTCTTCTCATGATCACACTTCC 58.272 41.667 0.00 0.00 0.00 3.46
4951 5663 5.246883 TCTTCTTCTCATGATCACACTTCCA 59.753 40.000 0.00 0.00 0.00 3.53
4952 5664 5.082251 TCTTCTCATGATCACACTTCCAG 57.918 43.478 0.00 0.00 0.00 3.86
4953 5665 4.774200 TCTTCTCATGATCACACTTCCAGA 59.226 41.667 0.00 0.00 0.00 3.86
4954 5666 5.246883 TCTTCTCATGATCACACTTCCAGAA 59.753 40.000 0.00 0.00 0.00 3.02
4955 5667 4.825422 TCTCATGATCACACTTCCAGAAC 58.175 43.478 0.00 0.00 0.00 3.01
4956 5668 3.937706 CTCATGATCACACTTCCAGAACC 59.062 47.826 0.00 0.00 0.00 3.62
4957 5669 3.327464 TCATGATCACACTTCCAGAACCA 59.673 43.478 0.00 0.00 0.00 3.67
4958 5670 4.019051 TCATGATCACACTTCCAGAACCAT 60.019 41.667 0.00 0.00 0.00 3.55
4959 5671 4.371624 TGATCACACTTCCAGAACCATT 57.628 40.909 0.00 0.00 0.00 3.16
4960 5672 4.326826 TGATCACACTTCCAGAACCATTC 58.673 43.478 0.00 0.00 0.00 2.67
4961 5673 3.140325 TCACACTTCCAGAACCATTCC 57.860 47.619 0.00 0.00 0.00 3.01
4962 5674 1.806542 CACACTTCCAGAACCATTCCG 59.193 52.381 0.00 0.00 0.00 4.30
4963 5675 0.804989 CACTTCCAGAACCATTCCGC 59.195 55.000 0.00 0.00 0.00 5.54
4964 5676 0.673644 ACTTCCAGAACCATTCCGCG 60.674 55.000 0.00 0.00 0.00 6.46
4965 5677 0.673644 CTTCCAGAACCATTCCGCGT 60.674 55.000 4.92 0.00 0.00 6.01
4966 5678 0.672401 TTCCAGAACCATTCCGCGTC 60.672 55.000 4.92 0.00 0.00 5.19
4967 5679 2.106683 CCAGAACCATTCCGCGTCC 61.107 63.158 4.92 0.00 0.00 4.79
4968 5680 2.125673 AGAACCATTCCGCGTCCG 60.126 61.111 4.92 0.00 0.00 4.79
4969 5681 3.861263 GAACCATTCCGCGTCCGC 61.861 66.667 4.92 0.68 37.85 5.54
4980 5692 4.457496 CGTCCGCCTGCATGAGGT 62.457 66.667 11.27 0.00 44.97 3.85
4989 5701 4.547859 GCATGAGGTGCGGATTCT 57.452 55.556 0.00 0.00 45.23 2.40
4990 5702 2.785868 GCATGAGGTGCGGATTCTT 58.214 52.632 0.00 0.00 45.23 2.52
4991 5703 0.379669 GCATGAGGTGCGGATTCTTG 59.620 55.000 0.00 3.97 45.23 3.02
4992 5704 0.379669 CATGAGGTGCGGATTCTTGC 59.620 55.000 0.00 0.00 0.00 4.01
4993 5705 0.254178 ATGAGGTGCGGATTCTTGCT 59.746 50.000 3.73 0.00 0.00 3.91
4994 5706 0.391661 TGAGGTGCGGATTCTTGCTC 60.392 55.000 3.73 0.00 0.00 4.26
4995 5707 1.424493 GAGGTGCGGATTCTTGCTCG 61.424 60.000 3.73 0.00 0.00 5.03
4998 5710 3.177600 GCGGATTCTTGCTCGCAA 58.822 55.556 4.09 4.09 46.33 4.85
4999 5711 1.501741 GCGGATTCTTGCTCGCAAA 59.498 52.632 5.77 0.00 46.33 3.68
5000 5712 0.794605 GCGGATTCTTGCTCGCAAAC 60.795 55.000 5.77 0.00 46.33 2.93
5001 5713 0.179189 CGGATTCTTGCTCGCAAACC 60.179 55.000 5.77 6.34 35.33 3.27
5002 5714 0.881118 GGATTCTTGCTCGCAAACCA 59.119 50.000 5.77 0.00 35.33 3.67
5003 5715 1.401539 GGATTCTTGCTCGCAAACCAC 60.402 52.381 5.77 0.00 35.33 4.16
5004 5716 0.238289 ATTCTTGCTCGCAAACCACG 59.762 50.000 5.77 0.00 35.33 4.94
5005 5717 2.387125 TTCTTGCTCGCAAACCACGC 62.387 55.000 5.77 0.00 35.33 5.34
5006 5718 3.879351 CTTGCTCGCAAACCACGCC 62.879 63.158 5.77 0.00 35.33 5.68
5008 5720 3.737172 GCTCGCAAACCACGCCAT 61.737 61.111 0.00 0.00 0.00 4.40
5009 5721 2.480555 CTCGCAAACCACGCCATC 59.519 61.111 0.00 0.00 0.00 3.51
5010 5722 3.367051 CTCGCAAACCACGCCATCG 62.367 63.158 0.00 0.00 42.43 3.84
5012 5724 4.776647 GCAAACCACGCCATCGCC 62.777 66.667 0.00 0.00 39.84 5.54
5013 5725 4.459331 CAAACCACGCCATCGCCG 62.459 66.667 0.00 0.00 39.84 6.46
5018 5730 4.794439 CACGCCATCGCCGTCTCA 62.794 66.667 0.00 0.00 39.84 3.27
5019 5731 3.838271 ACGCCATCGCCGTCTCAT 61.838 61.111 0.00 0.00 39.84 2.90
5020 5732 3.032609 CGCCATCGCCGTCTCATC 61.033 66.667 0.00 0.00 0.00 2.92
5021 5733 3.032609 GCCATCGCCGTCTCATCG 61.033 66.667 0.00 0.00 0.00 3.84
5022 5734 3.032609 CCATCGCCGTCTCATCGC 61.033 66.667 0.00 0.00 0.00 4.58
5023 5735 2.026734 CATCGCCGTCTCATCGCT 59.973 61.111 0.00 0.00 0.00 4.93
5024 5736 2.013483 CATCGCCGTCTCATCGCTC 61.013 63.158 0.00 0.00 0.00 5.03
5025 5737 2.481471 ATCGCCGTCTCATCGCTCA 61.481 57.895 0.00 0.00 0.00 4.26
5026 5738 2.669808 ATCGCCGTCTCATCGCTCAC 62.670 60.000 0.00 0.00 0.00 3.51
5027 5739 2.583593 GCCGTCTCATCGCTCACC 60.584 66.667 0.00 0.00 0.00 4.02
5028 5740 2.105128 CCGTCTCATCGCTCACCC 59.895 66.667 0.00 0.00 0.00 4.61
5029 5741 2.278206 CGTCTCATCGCTCACCCG 60.278 66.667 0.00 0.00 0.00 5.28
5030 5742 2.885861 GTCTCATCGCTCACCCGT 59.114 61.111 0.00 0.00 0.00 5.28
5031 5743 1.517257 GTCTCATCGCTCACCCGTG 60.517 63.158 0.00 0.00 0.00 4.94
5032 5744 1.977009 TCTCATCGCTCACCCGTGT 60.977 57.895 0.00 0.00 0.00 4.49
5033 5745 1.807165 CTCATCGCTCACCCGTGTG 60.807 63.158 0.00 0.00 44.18 3.82
5034 5746 2.048222 CATCGCTCACCCGTGTGT 60.048 61.111 0.00 0.00 43.26 3.72
5035 5747 1.667830 CATCGCTCACCCGTGTGTT 60.668 57.895 0.00 0.00 43.26 3.32
5036 5748 1.374252 ATCGCTCACCCGTGTGTTC 60.374 57.895 0.00 0.00 43.26 3.18
5037 5749 2.781595 ATCGCTCACCCGTGTGTTCC 62.782 60.000 0.00 0.00 43.26 3.62
5038 5750 2.426023 GCTCACCCGTGTGTTCCT 59.574 61.111 0.00 0.00 43.26 3.36
5039 5751 1.668151 GCTCACCCGTGTGTTCCTC 60.668 63.158 0.00 0.00 43.26 3.71
5040 5752 2.050269 CTCACCCGTGTGTTCCTCT 58.950 57.895 0.00 0.00 43.26 3.69
5041 5753 0.319900 CTCACCCGTGTGTTCCTCTG 60.320 60.000 0.00 0.00 43.26 3.35
5042 5754 1.961277 CACCCGTGTGTTCCTCTGC 60.961 63.158 0.00 0.00 37.72 4.26
5043 5755 2.140792 ACCCGTGTGTTCCTCTGCT 61.141 57.895 0.00 0.00 0.00 4.24
5044 5756 1.374758 CCCGTGTGTTCCTCTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
5045 5757 1.374758 CCGTGTGTTCCTCTGCTCC 60.375 63.158 0.00 0.00 0.00 4.70
5046 5758 1.367471 CGTGTGTTCCTCTGCTCCA 59.633 57.895 0.00 0.00 0.00 3.86
5047 5759 0.668706 CGTGTGTTCCTCTGCTCCAG 60.669 60.000 0.00 0.00 0.00 3.86
5048 5760 0.321122 GTGTGTTCCTCTGCTCCAGG 60.321 60.000 0.00 0.00 31.51 4.45
5049 5761 0.471780 TGTGTTCCTCTGCTCCAGGA 60.472 55.000 0.00 0.00 38.36 3.86
5050 5762 0.036858 GTGTTCCTCTGCTCCAGGAC 60.037 60.000 0.00 0.00 39.95 3.85
5051 5763 1.216710 GTTCCTCTGCTCCAGGACG 59.783 63.158 0.00 0.00 39.95 4.79
5052 5764 1.076727 TTCCTCTGCTCCAGGACGA 59.923 57.895 0.00 0.00 39.95 4.20
5053 5765 0.324738 TTCCTCTGCTCCAGGACGAT 60.325 55.000 0.00 0.00 39.95 3.73
5054 5766 1.039785 TCCTCTGCTCCAGGACGATG 61.040 60.000 0.00 0.00 34.91 3.84
5055 5767 1.227205 CTCTGCTCCAGGACGATGC 60.227 63.158 0.00 0.00 31.51 3.91
5056 5768 1.953231 CTCTGCTCCAGGACGATGCA 61.953 60.000 1.36 1.36 31.51 3.96
5057 5769 1.078918 CTGCTCCAGGACGATGCAA 60.079 57.895 2.90 0.00 33.07 4.08
5058 5770 1.078918 TGCTCCAGGACGATGCAAG 60.079 57.895 0.00 0.00 0.00 4.01
5059 5771 1.078848 GCTCCAGGACGATGCAAGT 60.079 57.895 0.00 0.00 0.00 3.16
5060 5772 1.086634 GCTCCAGGACGATGCAAGTC 61.087 60.000 14.96 14.96 37.86 3.01
5061 5773 0.534412 CTCCAGGACGATGCAAGTCT 59.466 55.000 20.31 8.13 38.58 3.24
5062 5774 0.532573 TCCAGGACGATGCAAGTCTC 59.467 55.000 20.31 12.93 38.58 3.36
5063 5775 0.460987 CCAGGACGATGCAAGTCTCC 60.461 60.000 20.31 9.53 38.58 3.71
5064 5776 0.460987 CAGGACGATGCAAGTCTCCC 60.461 60.000 20.31 8.95 38.58 4.30
5065 5777 0.616111 AGGACGATGCAAGTCTCCCT 60.616 55.000 20.31 10.70 38.58 4.20
5066 5778 0.179097 GGACGATGCAAGTCTCCCTC 60.179 60.000 20.31 4.94 38.58 4.30
5067 5779 0.820871 GACGATGCAAGTCTCCCTCT 59.179 55.000 15.73 0.00 35.84 3.69
5068 5780 1.205893 GACGATGCAAGTCTCCCTCTT 59.794 52.381 15.73 0.00 35.84 2.85
5069 5781 1.205893 ACGATGCAAGTCTCCCTCTTC 59.794 52.381 0.00 0.00 0.00 2.87
5070 5782 1.205655 CGATGCAAGTCTCCCTCTTCA 59.794 52.381 0.00 0.00 0.00 3.02
5071 5783 2.158986 CGATGCAAGTCTCCCTCTTCAT 60.159 50.000 0.00 0.00 0.00 2.57
5072 5784 3.465871 GATGCAAGTCTCCCTCTTCATC 58.534 50.000 0.00 0.00 0.00 2.92
5073 5785 1.205655 TGCAAGTCTCCCTCTTCATCG 59.794 52.381 0.00 0.00 0.00 3.84
5074 5786 1.472376 GCAAGTCTCCCTCTTCATCGG 60.472 57.143 0.00 0.00 0.00 4.18
5075 5787 1.137872 CAAGTCTCCCTCTTCATCGGG 59.862 57.143 0.00 0.00 42.05 5.14
5076 5788 1.045911 AGTCTCCCTCTTCATCGGGC 61.046 60.000 0.00 0.00 40.41 6.13
5077 5789 2.127869 TCTCCCTCTTCATCGGGCG 61.128 63.158 0.00 0.00 40.41 6.13
5078 5790 3.154473 TCCCTCTTCATCGGGCGG 61.154 66.667 0.00 0.00 40.41 6.13
5079 5791 4.241555 CCCTCTTCATCGGGCGGG 62.242 72.222 0.00 0.00 32.83 6.13
5080 5792 3.154473 CCTCTTCATCGGGCGGGA 61.154 66.667 0.00 0.00 0.00 5.14
5081 5793 2.107141 CTCTTCATCGGGCGGGAC 59.893 66.667 0.00 0.00 0.00 4.46
5082 5794 2.363795 TCTTCATCGGGCGGGACT 60.364 61.111 0.00 0.00 0.00 3.85
5083 5795 2.107141 CTTCATCGGGCGGGACTC 59.893 66.667 0.00 0.00 0.00 3.36
5084 5796 2.682136 TTCATCGGGCGGGACTCA 60.682 61.111 0.00 0.00 0.00 3.41
5085 5797 2.238847 CTTCATCGGGCGGGACTCAA 62.239 60.000 0.00 0.00 0.00 3.02
5086 5798 1.622607 TTCATCGGGCGGGACTCAAT 61.623 55.000 0.00 0.00 0.00 2.57
5087 5799 1.889105 CATCGGGCGGGACTCAATG 60.889 63.158 0.00 0.00 0.00 2.82
5088 5800 2.367202 ATCGGGCGGGACTCAATGT 61.367 57.895 0.00 0.00 0.00 2.71
5089 5801 1.910580 ATCGGGCGGGACTCAATGTT 61.911 55.000 0.00 0.00 0.00 2.71
5090 5802 2.106683 CGGGCGGGACTCAATGTTC 61.107 63.158 0.00 0.00 0.00 3.18
5091 5803 1.002624 GGGCGGGACTCAATGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
5092 5804 0.394352 GGGCGGGACTCAATGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
5093 5805 1.017387 GGCGGGACTCAATGTTCATC 58.983 55.000 0.00 0.00 0.00 2.92
5094 5806 1.678728 GGCGGGACTCAATGTTCATCA 60.679 52.381 0.00 0.00 0.00 3.07
5095 5807 1.667724 GCGGGACTCAATGTTCATCAG 59.332 52.381 0.00 0.00 0.00 2.90
5096 5808 1.667724 CGGGACTCAATGTTCATCAGC 59.332 52.381 0.00 0.00 0.00 4.26
5097 5809 1.667724 GGGACTCAATGTTCATCAGCG 59.332 52.381 0.00 0.00 0.00 5.18
5098 5810 1.667724 GGACTCAATGTTCATCAGCGG 59.332 52.381 0.00 0.00 0.00 5.52
5099 5811 1.063174 GACTCAATGTTCATCAGCGGC 59.937 52.381 0.00 0.00 0.00 6.53
5100 5812 0.379669 CTCAATGTTCATCAGCGGCC 59.620 55.000 0.00 0.00 0.00 6.13
5101 5813 1.031571 TCAATGTTCATCAGCGGCCC 61.032 55.000 0.00 0.00 0.00 5.80
5102 5814 2.114670 AATGTTCATCAGCGGCCCG 61.115 57.895 0.00 0.00 0.00 6.13
5103 5815 2.535485 AATGTTCATCAGCGGCCCGA 62.535 55.000 7.68 0.00 0.00 5.14
5104 5816 2.203070 GTTCATCAGCGGCCCGAT 60.203 61.111 7.68 0.00 0.00 4.18
5105 5817 2.203056 TTCATCAGCGGCCCGATG 60.203 61.111 16.67 16.67 44.93 3.84
5110 5822 2.892425 CAGCGGCCCGATGAACTC 60.892 66.667 18.07 0.00 46.56 3.01
5111 5823 3.077556 AGCGGCCCGATGAACTCT 61.078 61.111 7.68 0.00 0.00 3.24
5112 5824 2.892425 GCGGCCCGATGAACTCTG 60.892 66.667 7.68 0.00 0.00 3.35
5113 5825 2.892425 CGGCCCGATGAACTCTGC 60.892 66.667 0.00 0.00 0.00 4.26
5114 5826 2.268920 GGCCCGATGAACTCTGCA 59.731 61.111 0.00 0.00 0.00 4.41
5115 5827 1.153086 GGCCCGATGAACTCTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
5116 5828 1.162800 GGCCCGATGAACTCTGCATC 61.163 60.000 0.00 0.00 38.95 3.91
5117 5829 0.462581 GCCCGATGAACTCTGCATCA 60.463 55.000 0.00 0.00 41.66 3.07
5118 5830 1.579698 CCCGATGAACTCTGCATCAG 58.420 55.000 0.00 0.00 41.66 2.90
5119 5831 0.935898 CCGATGAACTCTGCATCAGC 59.064 55.000 0.00 0.00 41.66 4.26
5120 5832 0.935898 CGATGAACTCTGCATCAGCC 59.064 55.000 0.00 0.00 41.66 4.85
5121 5833 1.741394 CGATGAACTCTGCATCAGCCA 60.741 52.381 0.00 0.00 41.66 4.75
5122 5834 1.941294 GATGAACTCTGCATCAGCCAG 59.059 52.381 0.00 0.00 41.32 4.85
5123 5835 0.675837 TGAACTCTGCATCAGCCAGC 60.676 55.000 0.00 0.00 41.13 4.85
5124 5836 1.703438 GAACTCTGCATCAGCCAGCG 61.703 60.000 0.00 0.00 41.13 5.18
5125 5837 2.176314 AACTCTGCATCAGCCAGCGA 62.176 55.000 0.00 0.00 41.13 4.93
5126 5838 2.125391 TCTGCATCAGCCAGCGAC 60.125 61.111 0.00 0.00 41.13 5.19
5127 5839 2.125229 CTGCATCAGCCAGCGACT 60.125 61.111 0.00 0.00 41.13 4.18
5128 5840 2.125391 TGCATCAGCCAGCGACTC 60.125 61.111 0.00 0.00 41.13 3.36
5129 5841 3.260483 GCATCAGCCAGCGACTCG 61.260 66.667 0.00 0.00 33.58 4.18
5130 5842 2.491621 CATCAGCCAGCGACTCGA 59.508 61.111 1.63 0.00 0.00 4.04
5131 5843 1.067084 CATCAGCCAGCGACTCGAT 59.933 57.895 1.63 0.00 0.00 3.59
5132 5844 0.938637 CATCAGCCAGCGACTCGATC 60.939 60.000 1.63 0.00 0.00 3.69
5133 5845 1.106351 ATCAGCCAGCGACTCGATCT 61.106 55.000 1.63 0.00 0.00 2.75
5134 5846 1.299014 CAGCCAGCGACTCGATCTC 60.299 63.158 1.63 0.00 0.00 2.75
5135 5847 1.453015 AGCCAGCGACTCGATCTCT 60.453 57.895 1.63 0.00 0.00 3.10
5136 5848 0.179043 AGCCAGCGACTCGATCTCTA 60.179 55.000 1.63 0.00 0.00 2.43
5137 5849 0.237235 GCCAGCGACTCGATCTCTAG 59.763 60.000 1.63 0.00 0.00 2.43
5138 5850 0.871722 CCAGCGACTCGATCTCTAGG 59.128 60.000 1.63 0.00 0.00 3.02
5139 5851 1.541452 CCAGCGACTCGATCTCTAGGA 60.541 57.143 1.63 0.00 0.00 2.94
5140 5852 2.214347 CAGCGACTCGATCTCTAGGAA 58.786 52.381 1.63 0.00 0.00 3.36
5141 5853 2.223144 CAGCGACTCGATCTCTAGGAAG 59.777 54.545 1.63 0.00 0.00 3.46
5142 5854 2.158871 AGCGACTCGATCTCTAGGAAGT 60.159 50.000 1.63 0.00 0.00 3.01
5143 5855 2.614983 GCGACTCGATCTCTAGGAAGTT 59.385 50.000 1.63 0.00 0.00 2.66
5144 5856 3.547214 GCGACTCGATCTCTAGGAAGTTG 60.547 52.174 1.63 0.00 0.00 3.16
5145 5857 3.872182 CGACTCGATCTCTAGGAAGTTGA 59.128 47.826 0.00 0.00 0.00 3.18
5146 5858 4.025229 CGACTCGATCTCTAGGAAGTTGAG 60.025 50.000 0.00 0.00 0.00 3.02
5147 5859 3.630312 ACTCGATCTCTAGGAAGTTGAGC 59.370 47.826 0.00 0.00 0.00 4.26
5148 5860 3.882888 CTCGATCTCTAGGAAGTTGAGCT 59.117 47.826 0.00 0.00 0.00 4.09
5149 5861 3.880490 TCGATCTCTAGGAAGTTGAGCTC 59.120 47.826 6.82 6.82 0.00 4.09
5150 5862 3.629855 CGATCTCTAGGAAGTTGAGCTCA 59.370 47.826 13.74 13.74 0.00 4.26
5151 5863 4.278170 CGATCTCTAGGAAGTTGAGCTCAT 59.722 45.833 19.04 1.77 0.00 2.90
5152 5864 4.998671 TCTCTAGGAAGTTGAGCTCATG 57.001 45.455 19.04 1.24 0.00 3.07
5153 5865 3.131933 TCTCTAGGAAGTTGAGCTCATGC 59.868 47.826 19.04 13.65 40.05 4.06
5154 5866 2.169352 TCTAGGAAGTTGAGCTCATGCC 59.831 50.000 19.04 12.03 40.80 4.40
5155 5867 0.392193 AGGAAGTTGAGCTCATGCCG 60.392 55.000 19.04 0.00 40.80 5.69
5156 5868 1.427020 GAAGTTGAGCTCATGCCGC 59.573 57.895 19.04 5.99 40.80 6.53
5157 5869 2.301902 GAAGTTGAGCTCATGCCGCG 62.302 60.000 19.04 0.00 40.80 6.46
5158 5870 3.869272 GTTGAGCTCATGCCGCGG 61.869 66.667 24.05 24.05 40.80 6.46
5178 5890 4.864334 GGCCGAGCCTCCATGTGG 62.864 72.222 7.58 0.00 46.69 4.17
5186 5898 2.100846 CCTCCATGTGGCAATGTCG 58.899 57.895 0.00 0.00 34.44 4.35
5187 5899 0.677731 CCTCCATGTGGCAATGTCGT 60.678 55.000 0.00 0.00 34.44 4.34
5188 5900 1.406751 CCTCCATGTGGCAATGTCGTA 60.407 52.381 0.00 0.00 34.44 3.43
5189 5901 1.935873 CTCCATGTGGCAATGTCGTAG 59.064 52.381 0.00 0.00 34.44 3.51
5190 5902 1.016627 CCATGTGGCAATGTCGTAGG 58.983 55.000 0.00 0.00 0.00 3.18
5191 5903 0.378257 CATGTGGCAATGTCGTAGGC 59.622 55.000 0.00 0.00 0.00 3.93
5192 5904 1.089481 ATGTGGCAATGTCGTAGGCG 61.089 55.000 0.00 0.00 39.92 5.52
5193 5905 1.740296 GTGGCAATGTCGTAGGCGT 60.740 57.895 0.00 0.00 39.49 5.68
5194 5906 1.739929 TGGCAATGTCGTAGGCGTG 60.740 57.895 0.00 0.00 39.49 5.34
5195 5907 1.740296 GGCAATGTCGTAGGCGTGT 60.740 57.895 0.00 0.00 39.49 4.49
5196 5908 0.458889 GGCAATGTCGTAGGCGTGTA 60.459 55.000 0.00 0.00 39.49 2.90
5197 5909 0.643820 GCAATGTCGTAGGCGTGTAC 59.356 55.000 0.00 0.00 39.49 2.90
5198 5910 1.985334 CAATGTCGTAGGCGTGTACA 58.015 50.000 0.00 0.00 39.49 2.90
5199 5911 1.917955 CAATGTCGTAGGCGTGTACAG 59.082 52.381 0.00 0.00 39.49 2.74
5200 5912 0.179145 ATGTCGTAGGCGTGTACAGC 60.179 55.000 0.00 2.02 39.49 4.40
5207 5919 3.486263 GCGTGTACAGCCATGTCC 58.514 61.111 0.00 0.00 41.01 4.02
5208 5920 2.452813 GCGTGTACAGCCATGTCCG 61.453 63.158 0.00 0.00 41.01 4.79
5209 5921 2.452813 CGTGTACAGCCATGTCCGC 61.453 63.158 0.00 0.00 41.01 5.54
5210 5922 2.106683 GTGTACAGCCATGTCCGCC 61.107 63.158 0.00 0.00 41.01 6.13
5211 5923 2.890474 GTACAGCCATGTCCGCCG 60.890 66.667 0.00 0.00 41.01 6.46
5212 5924 3.387091 TACAGCCATGTCCGCCGT 61.387 61.111 0.00 0.00 41.01 5.68
5213 5925 3.365291 TACAGCCATGTCCGCCGTC 62.365 63.158 0.00 0.00 41.01 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.676471 GGCGCCAAAGGGACACAT 60.676 61.111 24.80 0.00 35.59 3.21
26 27 3.271014 GTCGCTGACGGTCACCTA 58.729 61.111 6.76 0.00 40.63 3.08
35 36 0.317436 CTATCTGGCTCGTCGCTGAC 60.317 60.000 0.00 0.00 39.13 3.51
39 40 0.315568 AATCCTATCTGGCTCGTCGC 59.684 55.000 0.00 0.00 35.26 5.19
52 53 1.416401 GTCCATCGCCAGGAAATCCTA 59.584 52.381 0.70 0.00 46.65 2.94
56 57 1.153168 CGGTCCATCGCCAGGAAAT 60.153 57.895 0.00 0.00 36.80 2.17
74 75 2.187163 GGTGTAGGAGCCGGAAGC 59.813 66.667 5.05 0.00 44.25 3.86
75 76 2.494918 CGGTGTAGGAGCCGGAAG 59.505 66.667 5.05 0.00 43.85 3.46
307 308 2.044252 AAGGAGTAGCCCGCGAGA 60.044 61.111 8.23 0.00 37.37 4.04
318 319 0.252103 TACCTTGCGGGAGAAGGAGT 60.252 55.000 6.76 0.00 42.44 3.85
370 371 3.804329 TGGCTCGGGGTAATGGCC 61.804 66.667 0.00 0.00 42.73 5.36
376 377 4.720902 TCGTCGTGGCTCGGGGTA 62.721 66.667 9.26 0.00 40.32 3.69
475 476 3.674997 CTTCTAAAGCCACCAAGCAGTA 58.325 45.455 0.00 0.00 34.23 2.74
492 493 2.034687 AGCCATTGCGGTGCTTCT 59.965 55.556 0.00 0.00 44.33 2.85
557 558 3.828451 CAGAATTTTGCCTCTTCCCAGAA 59.172 43.478 0.00 0.00 0.00 3.02
560 561 2.528564 CCAGAATTTTGCCTCTTCCCA 58.471 47.619 0.00 0.00 0.00 4.37
657 662 3.391665 GACGCATGAGTGGAGGGGG 62.392 68.421 6.88 0.00 0.00 5.40
755 771 8.446273 GCGTATCATTGCATTGATAAGTAGAAT 58.554 33.333 28.80 11.32 39.61 2.40
836 852 4.518278 ACCCAGTGTTGCATGGAATATA 57.482 40.909 1.94 0.00 39.02 0.86
869 885 0.801251 GCGACGAGGTATAGCCGTAT 59.199 55.000 15.25 0.00 43.70 3.06
870 886 1.230635 GGCGACGAGGTATAGCCGTA 61.231 60.000 15.25 0.00 43.70 4.02
871 887 2.550101 GGCGACGAGGTATAGCCGT 61.550 63.158 15.21 15.21 43.70 5.68
872 888 2.254651 GGCGACGAGGTATAGCCG 59.745 66.667 0.00 10.09 43.70 5.52
873 889 2.198287 TGGGCGACGAGGTATAGCC 61.198 63.158 0.00 0.00 46.51 3.93
874 890 1.007618 GTGGGCGACGAGGTATAGC 60.008 63.158 0.00 0.00 0.00 2.97
899 915 1.075822 ACCGTCCCATCCCGTCATA 60.076 57.895 0.00 0.00 0.00 2.15
902 918 3.072468 TCACCGTCCCATCCCGTC 61.072 66.667 0.00 0.00 0.00 4.79
931 947 3.595819 GGCCAGCAACAGCCTAAG 58.404 61.111 0.00 0.00 46.14 2.18
960 976 1.134521 TGTGGTTTCTGAGTGCGAGTT 60.135 47.619 0.00 0.00 0.00 3.01
1016 1032 0.110104 AAGCAGAGCAAGCAGAGGTT 59.890 50.000 0.00 0.00 0.00 3.50
1234 1250 0.788995 CAGCGCAGAAACAGAGTCTG 59.211 55.000 18.83 18.83 44.48 3.51
1236 1252 1.224069 TGCAGCGCAGAAACAGAGTC 61.224 55.000 11.47 0.00 33.32 3.36
1262 1278 3.311091 TGTAGTACCACCAGAACAGGTT 58.689 45.455 0.00 0.00 40.77 3.50
1492 1561 0.250770 AGTTTCGGGGCTTGAGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
1531 1600 4.278975 GGATACCATGAAGATGAGGTCC 57.721 50.000 0.00 0.00 35.62 4.46
1623 1737 2.278659 CTGCCATTGACGCACGTACG 62.279 60.000 15.01 15.01 39.50 3.67
1938 2060 2.208431 CTCTCCAGCAAATGACCGATC 58.792 52.381 0.00 0.00 0.00 3.69
1971 2123 0.110688 CAGCAATCGGTTCACACACG 60.111 55.000 0.00 0.00 0.00 4.49
1977 2129 6.918626 TCAAATTAAATCAGCAATCGGTTCA 58.081 32.000 0.00 0.00 0.00 3.18
2113 2269 0.530744 ATGCAATGCAAGCACTGAGG 59.469 50.000 13.45 0.00 45.95 3.86
2165 2326 3.322541 CCGGGGAGTTGGTTTTTAACATT 59.677 43.478 0.00 0.00 0.00 2.71
2167 2328 2.308690 CCGGGGAGTTGGTTTTTAACA 58.691 47.619 0.00 0.00 0.00 2.41
2168 2329 2.294233 GACCGGGGAGTTGGTTTTTAAC 59.706 50.000 6.32 0.00 38.99 2.01
2171 2333 0.259356 TGACCGGGGAGTTGGTTTTT 59.741 50.000 6.32 0.00 38.99 1.94
2177 2339 2.040544 GCATGTGACCGGGGAGTTG 61.041 63.158 6.32 0.00 0.00 3.16
2262 2424 4.436998 CACGACCCCTGCGAGTCC 62.437 72.222 0.00 0.00 0.00 3.85
2290 2452 4.096081 GCTCTTGGAGTCAATGAAATCCAG 59.904 45.833 15.33 11.24 42.54 3.86
2350 2512 4.644234 TGTCAGCAAAGGAAATGAGACAAA 59.356 37.500 0.00 0.00 34.01 2.83
2617 2780 1.520342 GCAGGCTCACTCGTGATCC 60.520 63.158 11.04 11.04 44.06 3.36
2671 2834 1.821216 GTCATGTGGGTGGGTGTAAG 58.179 55.000 0.00 0.00 0.00 2.34
2677 2840 2.046314 GGACGTCATGTGGGTGGG 60.046 66.667 18.91 0.00 0.00 4.61
2678 2841 2.046314 GGGACGTCATGTGGGTGG 60.046 66.667 18.91 0.00 0.00 4.61
2679 2842 1.375908 CAGGGACGTCATGTGGGTG 60.376 63.158 18.91 0.00 0.00 4.61
2682 2845 1.079127 GGACAGGGACGTCATGTGG 60.079 63.158 24.95 9.70 37.66 4.17
2684 2847 1.125093 TTGGGACAGGGACGTCATGT 61.125 55.000 21.42 21.42 42.39 3.21
2811 2990 5.762825 ACATTTTCAAGATCCATCCATCG 57.237 39.130 0.00 0.00 0.00 3.84
2826 3005 9.478019 CATCGATCAGTACAGTTTAACATTTTC 57.522 33.333 0.00 0.00 0.00 2.29
3003 3197 5.278463 GCTGGAAGAGAGTAAAAACAATGCA 60.278 40.000 0.00 0.00 34.07 3.96
3004 3198 5.048434 AGCTGGAAGAGAGTAAAAACAATGC 60.048 40.000 0.00 0.00 34.07 3.56
3005 3199 6.566197 AGCTGGAAGAGAGTAAAAACAATG 57.434 37.500 0.00 0.00 34.07 2.82
3006 3200 6.547510 ACAAGCTGGAAGAGAGTAAAAACAAT 59.452 34.615 0.00 0.00 34.07 2.71
3029 3230 4.890088 AGCAACTGTCGAGGTTTATTACA 58.110 39.130 1.52 0.00 0.00 2.41
3034 3235 3.575256 TCCTAAGCAACTGTCGAGGTTTA 59.425 43.478 1.52 0.00 0.00 2.01
3037 3238 1.629043 TCCTAAGCAACTGTCGAGGT 58.371 50.000 0.00 0.00 0.00 3.85
3106 3307 2.423577 GTCGTTAGGACTTGTGCCAAT 58.576 47.619 0.00 0.00 42.62 3.16
3165 3366 0.107945 CTGACAGCAAGAGTAGGGCC 60.108 60.000 0.00 0.00 0.00 5.80
3180 3381 1.140816 GACAGCTCCGTTGAACTGAC 58.859 55.000 0.38 0.00 36.94 3.51
3181 3382 0.750249 TGACAGCTCCGTTGAACTGA 59.250 50.000 0.38 0.00 36.94 3.41
3184 3385 2.086054 ATCTGACAGCTCCGTTGAAC 57.914 50.000 0.00 0.00 0.00 3.18
3185 3386 2.839486 AATCTGACAGCTCCGTTGAA 57.161 45.000 0.00 0.00 0.00 2.69
3187 3388 1.929836 GCTAATCTGACAGCTCCGTTG 59.070 52.381 0.00 0.00 34.86 4.10
3188 3389 1.550524 TGCTAATCTGACAGCTCCGTT 59.449 47.619 12.65 0.00 38.63 4.44
3189 3390 1.135915 CTGCTAATCTGACAGCTCCGT 59.864 52.381 12.65 0.00 38.63 4.69
3190 3391 1.406898 TCTGCTAATCTGACAGCTCCG 59.593 52.381 12.65 4.06 38.63 4.63
3191 3392 2.797792 CGTCTGCTAATCTGACAGCTCC 60.798 54.545 12.65 2.61 41.90 4.70
3192 3393 2.458951 CGTCTGCTAATCTGACAGCTC 58.541 52.381 12.65 4.88 41.90 4.09
3193 3394 1.135915 CCGTCTGCTAATCTGACAGCT 59.864 52.381 12.65 0.00 41.90 4.24
3194 3395 1.135139 TCCGTCTGCTAATCTGACAGC 59.865 52.381 0.00 6.22 41.90 4.40
3195 3396 3.443037 CTTCCGTCTGCTAATCTGACAG 58.557 50.000 0.00 0.00 41.90 3.51
3196 3397 2.417379 GCTTCCGTCTGCTAATCTGACA 60.417 50.000 0.00 0.00 41.90 3.58
3303 3504 4.731313 ATGGAAGGTTCTTTGAAGGACT 57.269 40.909 2.41 0.00 34.81 3.85
3420 3622 6.735556 ACCAATACAATCTGGGAGAAAAGAT 58.264 36.000 0.00 0.00 37.00 2.40
3426 3628 2.434336 CCGACCAATACAATCTGGGAGA 59.566 50.000 0.00 0.00 37.00 3.71
3427 3629 2.434336 TCCGACCAATACAATCTGGGAG 59.566 50.000 0.00 0.00 37.00 4.30
3524 3729 2.722094 AGTGGCTTGTTTCACTCAACA 58.278 42.857 0.00 0.00 39.77 3.33
3527 3732 4.947388 AGTTAAAGTGGCTTGTTTCACTCA 59.053 37.500 0.00 0.00 42.67 3.41
3548 3753 3.549997 GCAACATGCACGTTTCAGT 57.450 47.368 0.00 0.00 44.26 3.41
3571 3776 7.750229 AATAGTTGAAAAGAACATCTGCAGA 57.250 32.000 20.79 20.79 0.00 4.26
3618 3824 7.318141 ACCATACGCGTGTTAAAGCTATATAT 58.682 34.615 24.59 0.00 0.00 0.86
3646 3852 0.037232 ACACTGACGAAGCCCTAAGC 60.037 55.000 0.00 0.00 44.25 3.09
3655 3861 2.480587 CCACACACTGTACACTGACGAA 60.481 50.000 9.20 0.00 0.00 3.85
3666 3872 3.620427 TTTCTACACACCACACACTGT 57.380 42.857 0.00 0.00 0.00 3.55
3667 3873 5.062183 CGATATTTCTACACACCACACACTG 59.938 44.000 0.00 0.00 0.00 3.66
3668 3874 5.168569 CGATATTTCTACACACCACACACT 58.831 41.667 0.00 0.00 0.00 3.55
3671 3877 4.032900 CAGCGATATTTCTACACACCACAC 59.967 45.833 0.00 0.00 0.00 3.82
3672 3878 4.180817 CAGCGATATTTCTACACACCACA 58.819 43.478 0.00 0.00 0.00 4.17
3674 3880 3.194861 GCAGCGATATTTCTACACACCA 58.805 45.455 0.00 0.00 0.00 4.17
3677 3883 3.118775 ACAGGCAGCGATATTTCTACACA 60.119 43.478 0.00 0.00 0.00 3.72
3678 3884 3.458189 ACAGGCAGCGATATTTCTACAC 58.542 45.455 0.00 0.00 0.00 2.90
3679 3885 3.819564 ACAGGCAGCGATATTTCTACA 57.180 42.857 0.00 0.00 0.00 2.74
3680 3886 3.669122 CGTACAGGCAGCGATATTTCTAC 59.331 47.826 0.00 0.00 0.00 2.59
3682 3888 2.361119 TCGTACAGGCAGCGATATTTCT 59.639 45.455 0.00 0.00 0.00 2.52
3683 3889 2.739292 TCGTACAGGCAGCGATATTTC 58.261 47.619 0.00 0.00 0.00 2.17
3684 3890 2.882927 TCGTACAGGCAGCGATATTT 57.117 45.000 0.00 0.00 0.00 1.40
3687 3893 2.483106 GTCTATCGTACAGGCAGCGATA 59.517 50.000 0.00 0.00 43.74 2.92
3688 3894 1.267261 GTCTATCGTACAGGCAGCGAT 59.733 52.381 0.00 0.00 45.58 4.58
3689 3895 0.661552 GTCTATCGTACAGGCAGCGA 59.338 55.000 0.00 0.00 39.02 4.93
3690 3896 0.663688 AGTCTATCGTACAGGCAGCG 59.336 55.000 0.00 0.00 0.00 5.18
3691 3897 3.984508 TTAGTCTATCGTACAGGCAGC 57.015 47.619 0.00 0.00 0.00 5.25
3692 3898 5.440234 ACATTAGTCTATCGTACAGGCAG 57.560 43.478 0.00 0.00 0.00 4.85
3693 3899 5.126545 ACAACATTAGTCTATCGTACAGGCA 59.873 40.000 0.00 0.00 0.00 4.75
3694 3900 5.589192 ACAACATTAGTCTATCGTACAGGC 58.411 41.667 0.00 0.00 0.00 4.85
3695 3901 7.928103 AGTACAACATTAGTCTATCGTACAGG 58.072 38.462 0.00 0.00 32.38 4.00
3696 3902 9.861138 GTAGTACAACATTAGTCTATCGTACAG 57.139 37.037 0.00 0.00 32.38 2.74
3697 3903 8.542953 CGTAGTACAACATTAGTCTATCGTACA 58.457 37.037 0.38 0.00 32.38 2.90
3698 3904 8.543774 ACGTAGTACAACATTAGTCTATCGTAC 58.456 37.037 0.38 0.00 41.94 3.67
3699 3905 8.648557 ACGTAGTACAACATTAGTCTATCGTA 57.351 34.615 0.38 0.00 41.94 3.43
3700 3906 7.545362 ACGTAGTACAACATTAGTCTATCGT 57.455 36.000 0.38 0.00 41.94 3.73
3701 3907 8.333908 AGAACGTAGTACAACATTAGTCTATCG 58.666 37.037 0.38 0.00 45.00 2.92
3705 3911 9.837525 CTAAAGAACGTAGTACAACATTAGTCT 57.162 33.333 0.38 0.00 45.00 3.24
3706 3912 9.831737 TCTAAAGAACGTAGTACAACATTAGTC 57.168 33.333 0.38 0.00 45.00 2.59
3707 3913 9.617975 GTCTAAAGAACGTAGTACAACATTAGT 57.382 33.333 0.38 0.00 45.00 2.24
3708 3914 9.837525 AGTCTAAAGAACGTAGTACAACATTAG 57.162 33.333 0.38 4.63 45.00 1.73
3709 3915 9.616634 CAGTCTAAAGAACGTAGTACAACATTA 57.383 33.333 0.38 0.00 45.00 1.90
3710 3916 8.355169 TCAGTCTAAAGAACGTAGTACAACATT 58.645 33.333 0.38 0.00 45.00 2.71
3711 3917 7.879070 TCAGTCTAAAGAACGTAGTACAACAT 58.121 34.615 0.38 0.00 45.00 2.71
3712 3918 7.263100 TCAGTCTAAAGAACGTAGTACAACA 57.737 36.000 0.38 0.00 45.00 3.33
3713 3919 6.305160 GCTCAGTCTAAAGAACGTAGTACAAC 59.695 42.308 0.38 0.00 45.00 3.32
3714 3920 6.376978 GCTCAGTCTAAAGAACGTAGTACAA 58.623 40.000 0.38 0.00 45.00 2.41
3719 3925 4.705337 AGGCTCAGTCTAAAGAACGTAG 57.295 45.455 0.00 0.00 0.00 3.51
3722 3928 4.156190 TCACTAGGCTCAGTCTAAAGAACG 59.844 45.833 0.00 0.00 0.00 3.95
3763 3975 4.940046 CACATCCAGCTTCACAAAGAGTAT 59.060 41.667 0.00 0.00 34.14 2.12
3834 4080 2.301296 TGGTGAGAGAGAAAGGCTTGAG 59.699 50.000 0.00 0.00 0.00 3.02
3848 4094 5.768980 AGAATCTGGAGAAAATGGTGAGA 57.231 39.130 0.00 0.00 0.00 3.27
3851 4097 4.219070 TGCAAGAATCTGGAGAAAATGGTG 59.781 41.667 0.00 0.00 0.00 4.17
4021 4271 3.682718 CGCCAAGGATCCAGTAGAAATGT 60.683 47.826 15.82 0.00 0.00 2.71
4064 4314 2.371841 TCCAGTAGAAATGTGGTGTGCT 59.628 45.455 0.00 0.00 32.73 4.40
4222 4475 0.485099 AGGATCTGCTCTATCCGGGT 59.515 55.000 0.00 0.00 46.37 5.28
4223 4476 0.894141 CAGGATCTGCTCTATCCGGG 59.106 60.000 0.00 0.00 46.37 5.73
4247 4500 4.619863 CGTCAGTTTCCTTTTCCTATCCGA 60.620 45.833 0.00 0.00 0.00 4.55
4269 4522 8.064814 GCAGCCTTTCTTTTTATACTTCTATCG 58.935 37.037 0.00 0.00 0.00 2.92
4282 4535 5.761165 TTAAAGTACGCAGCCTTTCTTTT 57.239 34.783 0.00 0.00 34.56 2.27
4292 4545 1.717194 TCGCCCTTTAAAGTACGCAG 58.283 50.000 17.60 10.97 0.00 5.18
4379 4634 7.001073 AGAAGCTCTAAAAGGTGTCATCTTTT 58.999 34.615 23.70 23.70 43.95 2.27
4471 4726 6.402118 CCTTTTATACCGTTGTGTGAGATGTG 60.402 42.308 0.00 0.00 0.00 3.21
4590 4846 6.036577 TGAATGCCCTAAAATTCACCTTTC 57.963 37.500 0.00 0.00 37.76 2.62
4671 5382 6.111382 TCTGCAATGTTTGGATGTTCAAAAA 58.889 32.000 0.00 0.00 38.21 1.94
4682 5393 4.687483 GGAAGTGAATTCTGCAATGTTTGG 59.313 41.667 7.05 0.00 38.07 3.28
4692 5403 6.563422 TGTTTGAACTTGGAAGTGAATTCTG 58.437 36.000 7.05 0.00 39.66 3.02
4740 5451 7.566760 TGGATGTTCGTTTAATCTATGCAAT 57.433 32.000 0.00 0.00 0.00 3.56
4741 5452 6.993786 TGGATGTTCGTTTAATCTATGCAA 57.006 33.333 0.00 0.00 0.00 4.08
4742 5453 6.993786 TTGGATGTTCGTTTAATCTATGCA 57.006 33.333 0.00 0.00 0.00 3.96
4743 5454 7.472543 AGTTTGGATGTTCGTTTAATCTATGC 58.527 34.615 0.00 0.00 0.00 3.14
4746 5457 9.715121 AGTTAGTTTGGATGTTCGTTTAATCTA 57.285 29.630 0.00 0.00 0.00 1.98
4747 5458 8.617290 AGTTAGTTTGGATGTTCGTTTAATCT 57.383 30.769 0.00 0.00 0.00 2.40
4748 5459 7.961283 GGAGTTAGTTTGGATGTTCGTTTAATC 59.039 37.037 0.00 0.00 0.00 1.75
4750 5461 6.073657 CGGAGTTAGTTTGGATGTTCGTTTAA 60.074 38.462 0.00 0.00 0.00 1.52
4751 5462 5.406175 CGGAGTTAGTTTGGATGTTCGTTTA 59.594 40.000 0.00 0.00 0.00 2.01
4752 5463 4.212636 CGGAGTTAGTTTGGATGTTCGTTT 59.787 41.667 0.00 0.00 0.00 3.60
4753 5464 3.744426 CGGAGTTAGTTTGGATGTTCGTT 59.256 43.478 0.00 0.00 0.00 3.85
4755 5466 3.367025 GTCGGAGTTAGTTTGGATGTTCG 59.633 47.826 0.00 0.00 0.00 3.95
4756 5467 3.367025 CGTCGGAGTTAGTTTGGATGTTC 59.633 47.826 0.00 0.00 0.00 3.18
4757 5468 3.323243 CGTCGGAGTTAGTTTGGATGTT 58.677 45.455 0.00 0.00 0.00 2.71
4759 5470 2.094390 TCCGTCGGAGTTAGTTTGGATG 60.094 50.000 10.71 0.00 0.00 3.51
4760 5471 2.094338 GTCCGTCGGAGTTAGTTTGGAT 60.094 50.000 15.95 0.00 29.39 3.41
4761 5472 1.270550 GTCCGTCGGAGTTAGTTTGGA 59.729 52.381 15.95 0.00 29.39 3.53
4765 5476 1.000171 GGTTGTCCGTCGGAGTTAGTT 60.000 52.381 15.95 0.00 29.39 2.24
4766 5477 0.600057 GGTTGTCCGTCGGAGTTAGT 59.400 55.000 15.95 0.00 29.39 2.24
4767 5478 0.886563 AGGTTGTCCGTCGGAGTTAG 59.113 55.000 15.95 0.00 39.05 2.34
4769 5480 1.664306 GAGGTTGTCCGTCGGAGTT 59.336 57.895 15.95 0.00 39.05 3.01
4790 5502 1.071019 CGAGTCCCACGACATTGACG 61.071 60.000 6.97 6.97 41.87 4.35
4799 5511 1.502640 GAGAGTGACGAGTCCCACG 59.497 63.158 0.34 0.00 38.26 4.94
4825 5537 2.049156 CCTTGCGCGTGAGAGTGA 60.049 61.111 8.43 0.00 0.00 3.41
4851 5563 2.618053 GATGAGGGTTTCGACGTTGAT 58.382 47.619 6.27 0.00 0.00 2.57
4856 5568 1.533338 CCTACGATGAGGGTTTCGACG 60.533 57.143 0.00 0.00 38.67 5.12
4861 5573 2.108970 GGAGTCCTACGATGAGGGTTT 58.891 52.381 0.41 0.00 37.20 3.27
4869 5581 2.959707 GGTGAAGATGGAGTCCTACGAT 59.040 50.000 11.33 0.00 0.00 3.73
4873 5585 2.044492 AGGTGGTGAAGATGGAGTCCTA 59.956 50.000 11.33 0.00 0.00 2.94
4885 5597 1.367346 TGGCCTTCATAGGTGGTGAA 58.633 50.000 3.32 0.00 44.00 3.18
4888 5600 2.208872 AGAATGGCCTTCATAGGTGGT 58.791 47.619 3.32 0.00 44.00 4.16
4894 5606 4.526970 GGTCAAGAAGAATGGCCTTCATA 58.473 43.478 3.32 0.00 43.68 2.15
4895 5607 3.359950 GGTCAAGAAGAATGGCCTTCAT 58.640 45.455 3.32 0.00 43.68 2.57
4896 5608 2.795329 GGTCAAGAAGAATGGCCTTCA 58.205 47.619 3.32 0.00 43.68 3.02
4900 5612 1.756430 GGAGGTCAAGAAGAATGGCC 58.244 55.000 0.00 0.00 43.03 5.36
4901 5613 1.373570 CGGAGGTCAAGAAGAATGGC 58.626 55.000 0.00 0.00 0.00 4.40
4902 5614 1.373570 GCGGAGGTCAAGAAGAATGG 58.626 55.000 0.00 0.00 0.00 3.16
4903 5615 1.065854 AGGCGGAGGTCAAGAAGAATG 60.066 52.381 0.00 0.00 0.00 2.67
4904 5616 1.280457 AGGCGGAGGTCAAGAAGAAT 58.720 50.000 0.00 0.00 0.00 2.40
4905 5617 1.002087 GAAGGCGGAGGTCAAGAAGAA 59.998 52.381 0.00 0.00 0.00 2.52
4906 5618 0.608640 GAAGGCGGAGGTCAAGAAGA 59.391 55.000 0.00 0.00 0.00 2.87
4907 5619 0.610687 AGAAGGCGGAGGTCAAGAAG 59.389 55.000 0.00 0.00 0.00 2.85
4908 5620 1.002087 GAAGAAGGCGGAGGTCAAGAA 59.998 52.381 0.00 0.00 0.00 2.52
4909 5621 0.608640 GAAGAAGGCGGAGGTCAAGA 59.391 55.000 0.00 0.00 0.00 3.02
4910 5622 0.610687 AGAAGAAGGCGGAGGTCAAG 59.389 55.000 0.00 0.00 0.00 3.02
4911 5623 1.002087 GAAGAAGAAGGCGGAGGTCAA 59.998 52.381 0.00 0.00 0.00 3.18
4912 5624 0.608640 GAAGAAGAAGGCGGAGGTCA 59.391 55.000 0.00 0.00 0.00 4.02
4913 5625 0.899019 AGAAGAAGAAGGCGGAGGTC 59.101 55.000 0.00 0.00 0.00 3.85
4914 5626 1.276705 GAAGAAGAAGAAGGCGGAGGT 59.723 52.381 0.00 0.00 0.00 3.85
4915 5627 1.552792 AGAAGAAGAAGAAGGCGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
4916 5628 2.232452 TGAGAAGAAGAAGAAGGCGGAG 59.768 50.000 0.00 0.00 0.00 4.63
4917 5629 2.248248 TGAGAAGAAGAAGAAGGCGGA 58.752 47.619 0.00 0.00 0.00 5.54
4918 5630 2.751166 TGAGAAGAAGAAGAAGGCGG 57.249 50.000 0.00 0.00 0.00 6.13
4919 5631 3.854666 TCATGAGAAGAAGAAGAAGGCG 58.145 45.455 0.00 0.00 0.00 5.52
4920 5632 5.294060 GTGATCATGAGAAGAAGAAGAAGGC 59.706 44.000 0.00 0.00 0.00 4.35
4921 5633 6.313411 GTGTGATCATGAGAAGAAGAAGAAGG 59.687 42.308 0.00 0.00 0.00 3.46
4922 5634 7.098477 AGTGTGATCATGAGAAGAAGAAGAAG 58.902 38.462 0.00 0.00 0.00 2.85
4923 5635 7.002250 AGTGTGATCATGAGAAGAAGAAGAA 57.998 36.000 0.00 0.00 0.00 2.52
4924 5636 6.602410 AGTGTGATCATGAGAAGAAGAAGA 57.398 37.500 0.00 0.00 0.00 2.87
4925 5637 6.313411 GGAAGTGTGATCATGAGAAGAAGAAG 59.687 42.308 0.00 0.00 0.00 2.85
4926 5638 6.169094 GGAAGTGTGATCATGAGAAGAAGAA 58.831 40.000 0.00 0.00 0.00 2.52
4927 5639 5.246883 TGGAAGTGTGATCATGAGAAGAAGA 59.753 40.000 0.00 0.00 0.00 2.87
4928 5640 5.485620 TGGAAGTGTGATCATGAGAAGAAG 58.514 41.667 0.00 0.00 0.00 2.85
4929 5641 5.246883 TCTGGAAGTGTGATCATGAGAAGAA 59.753 40.000 0.00 0.00 33.76 2.52
4930 5642 4.774200 TCTGGAAGTGTGATCATGAGAAGA 59.226 41.667 0.00 0.00 33.76 2.87
4931 5643 5.082251 TCTGGAAGTGTGATCATGAGAAG 57.918 43.478 0.00 0.00 33.76 2.85
4932 5644 5.240891 GTTCTGGAAGTGTGATCATGAGAA 58.759 41.667 0.00 0.00 33.76 2.87
4933 5645 4.323028 GGTTCTGGAAGTGTGATCATGAGA 60.323 45.833 0.00 0.00 33.76 3.27
4934 5646 3.937706 GGTTCTGGAAGTGTGATCATGAG 59.062 47.826 0.00 0.00 33.76 2.90
4935 5647 3.327464 TGGTTCTGGAAGTGTGATCATGA 59.673 43.478 0.00 0.00 33.76 3.07
4936 5648 3.678289 TGGTTCTGGAAGTGTGATCATG 58.322 45.455 0.00 0.00 33.76 3.07
4937 5649 4.581309 ATGGTTCTGGAAGTGTGATCAT 57.419 40.909 0.00 0.00 33.76 2.45
4938 5650 4.326826 GAATGGTTCTGGAAGTGTGATCA 58.673 43.478 0.00 0.00 33.76 2.92
4939 5651 3.691609 GGAATGGTTCTGGAAGTGTGATC 59.308 47.826 0.00 0.00 33.76 2.92
4940 5652 3.690460 GGAATGGTTCTGGAAGTGTGAT 58.310 45.455 0.00 0.00 33.76 3.06
4941 5653 2.549992 CGGAATGGTTCTGGAAGTGTGA 60.550 50.000 0.00 0.00 33.76 3.58
4942 5654 1.806542 CGGAATGGTTCTGGAAGTGTG 59.193 52.381 0.00 0.00 33.76 3.82
4943 5655 1.882352 GCGGAATGGTTCTGGAAGTGT 60.882 52.381 1.16 0.00 36.54 3.55
4944 5656 0.804989 GCGGAATGGTTCTGGAAGTG 59.195 55.000 1.16 0.00 36.54 3.16
4945 5657 0.673644 CGCGGAATGGTTCTGGAAGT 60.674 55.000 0.00 0.00 36.54 3.01
4946 5658 0.673644 ACGCGGAATGGTTCTGGAAG 60.674 55.000 12.47 0.00 36.54 3.46
4947 5659 0.672401 GACGCGGAATGGTTCTGGAA 60.672 55.000 12.47 0.00 36.54 3.53
4948 5660 1.079405 GACGCGGAATGGTTCTGGA 60.079 57.895 12.47 0.00 36.54 3.86
4949 5661 2.106683 GGACGCGGAATGGTTCTGG 61.107 63.158 12.47 0.00 36.54 3.86
4950 5662 2.452813 CGGACGCGGAATGGTTCTG 61.453 63.158 12.47 0.00 39.10 3.02
4951 5663 2.125673 CGGACGCGGAATGGTTCT 60.126 61.111 12.47 0.00 0.00 3.01
4952 5664 3.861263 GCGGACGCGGAATGGTTC 61.861 66.667 12.47 0.00 0.00 3.62
4973 5685 0.379669 GCAAGAATCCGCACCTCATG 59.620 55.000 0.00 0.00 0.00 3.07
4974 5686 0.254178 AGCAAGAATCCGCACCTCAT 59.746 50.000 0.00 0.00 0.00 2.90
4975 5687 0.391661 GAGCAAGAATCCGCACCTCA 60.392 55.000 0.00 0.00 0.00 3.86
4976 5688 1.424493 CGAGCAAGAATCCGCACCTC 61.424 60.000 0.00 0.00 0.00 3.85
4977 5689 1.448540 CGAGCAAGAATCCGCACCT 60.449 57.895 0.00 0.00 0.00 4.00
4978 5690 3.093278 CGAGCAAGAATCCGCACC 58.907 61.111 0.00 0.00 0.00 5.01
4979 5691 2.401195 GCGAGCAAGAATCCGCAC 59.599 61.111 0.00 0.00 46.04 5.34
4981 5693 0.794605 GTTTGCGAGCAAGAATCCGC 60.795 55.000 10.52 0.00 46.82 5.54
4982 5694 0.179189 GGTTTGCGAGCAAGAATCCG 60.179 55.000 10.52 0.00 37.24 4.18
4983 5695 0.881118 TGGTTTGCGAGCAAGAATCC 59.119 50.000 10.52 11.80 37.24 3.01
4984 5696 1.725931 CGTGGTTTGCGAGCAAGAATC 60.726 52.381 10.52 0.00 37.41 2.52
4985 5697 0.238289 CGTGGTTTGCGAGCAAGAAT 59.762 50.000 10.52 0.00 37.41 2.40
4986 5698 1.646540 CGTGGTTTGCGAGCAAGAA 59.353 52.632 10.52 0.00 37.41 2.52
4987 5699 2.892334 GCGTGGTTTGCGAGCAAGA 61.892 57.895 10.52 0.33 37.41 3.02
4988 5700 2.427410 GCGTGGTTTGCGAGCAAG 60.427 61.111 10.52 0.55 37.53 4.01
4989 5701 3.959975 GGCGTGGTTTGCGAGCAA 61.960 61.111 6.39 6.39 37.53 3.91
4991 5703 3.667429 GATGGCGTGGTTTGCGAGC 62.667 63.158 0.00 0.00 0.00 5.03
4992 5704 2.480555 GATGGCGTGGTTTGCGAG 59.519 61.111 0.00 0.00 0.00 5.03
4993 5705 3.418913 CGATGGCGTGGTTTGCGA 61.419 61.111 0.00 0.00 0.00 5.10
4995 5707 4.776647 GGCGATGGCGTGGTTTGC 62.777 66.667 0.00 0.00 41.24 3.68
4996 5708 4.459331 CGGCGATGGCGTGGTTTG 62.459 66.667 0.00 0.00 46.33 2.93
5004 5716 3.032609 CGATGAGACGGCGATGGC 61.033 66.667 16.62 0.00 38.90 4.40
5005 5717 3.032609 GCGATGAGACGGCGATGG 61.033 66.667 16.62 0.00 0.00 3.51
5006 5718 2.013483 GAGCGATGAGACGGCGATG 61.013 63.158 16.62 0.00 0.00 3.84
5007 5719 2.333225 GAGCGATGAGACGGCGAT 59.667 61.111 16.62 0.11 0.00 4.58
5008 5720 3.131478 TGAGCGATGAGACGGCGA 61.131 61.111 16.62 0.00 0.00 5.54
5009 5721 2.951745 GTGAGCGATGAGACGGCG 60.952 66.667 4.80 4.80 0.00 6.46
5010 5722 2.583593 GGTGAGCGATGAGACGGC 60.584 66.667 0.00 0.00 0.00 5.68
5011 5723 2.105128 GGGTGAGCGATGAGACGG 59.895 66.667 0.00 0.00 0.00 4.79
5012 5724 2.278206 CGGGTGAGCGATGAGACG 60.278 66.667 0.00 0.00 0.00 4.18
5013 5725 1.517257 CACGGGTGAGCGATGAGAC 60.517 63.158 0.00 0.00 0.00 3.36
5014 5726 1.977009 ACACGGGTGAGCGATGAGA 60.977 57.895 5.71 0.00 0.00 3.27
5015 5727 2.573869 ACACGGGTGAGCGATGAG 59.426 61.111 5.71 0.00 0.00 2.90
5025 5737 2.100879 GAGCAGAGGAACACACGGGT 62.101 60.000 0.00 0.00 0.00 5.28
5026 5738 1.374758 GAGCAGAGGAACACACGGG 60.375 63.158 0.00 0.00 0.00 5.28
5027 5739 1.374758 GGAGCAGAGGAACACACGG 60.375 63.158 0.00 0.00 0.00 4.94
5028 5740 0.668706 CTGGAGCAGAGGAACACACG 60.669 60.000 0.00 0.00 32.44 4.49
5029 5741 0.321122 CCTGGAGCAGAGGAACACAC 60.321 60.000 0.00 0.00 32.44 3.82
5030 5742 0.471780 TCCTGGAGCAGAGGAACACA 60.472 55.000 0.00 0.00 36.63 3.72
5031 5743 0.036858 GTCCTGGAGCAGAGGAACAC 60.037 60.000 0.00 0.00 41.42 3.32
5032 5744 1.536073 CGTCCTGGAGCAGAGGAACA 61.536 60.000 0.00 0.00 41.42 3.18
5033 5745 1.216710 CGTCCTGGAGCAGAGGAAC 59.783 63.158 0.00 0.00 41.42 3.62
5034 5746 0.324738 ATCGTCCTGGAGCAGAGGAA 60.325 55.000 0.00 0.00 41.42 3.36
5035 5747 1.039785 CATCGTCCTGGAGCAGAGGA 61.040 60.000 0.00 0.00 37.27 3.71
5036 5748 1.440893 CATCGTCCTGGAGCAGAGG 59.559 63.158 0.00 0.00 32.44 3.69
5037 5749 1.227205 GCATCGTCCTGGAGCAGAG 60.227 63.158 0.00 0.00 32.44 3.35
5038 5750 1.543944 TTGCATCGTCCTGGAGCAGA 61.544 55.000 8.16 4.10 36.47 4.26
5039 5751 1.078918 TTGCATCGTCCTGGAGCAG 60.079 57.895 8.16 0.00 36.47 4.24
5040 5752 1.078918 CTTGCATCGTCCTGGAGCA 60.079 57.895 0.00 0.00 0.00 4.26
5041 5753 1.078848 ACTTGCATCGTCCTGGAGC 60.079 57.895 0.00 0.00 0.00 4.70
5042 5754 0.534412 AGACTTGCATCGTCCTGGAG 59.466 55.000 11.70 0.00 31.83 3.86
5043 5755 0.532573 GAGACTTGCATCGTCCTGGA 59.467 55.000 11.70 0.00 31.83 3.86
5044 5756 0.460987 GGAGACTTGCATCGTCCTGG 60.461 60.000 11.70 0.00 31.83 4.45
5045 5757 0.460987 GGGAGACTTGCATCGTCCTG 60.461 60.000 11.70 0.00 31.83 3.86
5046 5758 0.616111 AGGGAGACTTGCATCGTCCT 60.616 55.000 11.70 6.02 31.83 3.85
5047 5759 0.179097 GAGGGAGACTTGCATCGTCC 60.179 60.000 11.70 5.03 31.83 4.79
5048 5760 0.820871 AGAGGGAGACTTGCATCGTC 59.179 55.000 8.22 8.22 30.21 4.20
5049 5761 1.205893 GAAGAGGGAGACTTGCATCGT 59.794 52.381 0.00 0.00 30.21 3.73
5050 5762 1.205655 TGAAGAGGGAGACTTGCATCG 59.794 52.381 0.00 0.00 30.21 3.84
5051 5763 3.465871 GATGAAGAGGGAGACTTGCATC 58.534 50.000 0.00 0.00 31.84 3.91
5052 5764 2.158986 CGATGAAGAGGGAGACTTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
5053 5765 1.205655 CGATGAAGAGGGAGACTTGCA 59.794 52.381 0.00 0.00 0.00 4.08
5054 5766 1.472376 CCGATGAAGAGGGAGACTTGC 60.472 57.143 0.00 0.00 0.00 4.01
5055 5767 2.593346 CCGATGAAGAGGGAGACTTG 57.407 55.000 0.00 0.00 0.00 3.16
5063 5775 3.154473 TCCCGCCCGATGAAGAGG 61.154 66.667 0.00 0.00 0.00 3.69
5064 5776 2.107141 GTCCCGCCCGATGAAGAG 59.893 66.667 0.00 0.00 0.00 2.85
5065 5777 2.363795 AGTCCCGCCCGATGAAGA 60.364 61.111 0.00 0.00 0.00 2.87
5066 5778 2.107141 GAGTCCCGCCCGATGAAG 59.893 66.667 0.00 0.00 0.00 3.02
5067 5779 1.622607 ATTGAGTCCCGCCCGATGAA 61.623 55.000 0.00 0.00 0.00 2.57
5068 5780 2.063979 ATTGAGTCCCGCCCGATGA 61.064 57.895 0.00 0.00 0.00 2.92
5069 5781 1.889105 CATTGAGTCCCGCCCGATG 60.889 63.158 0.00 0.00 0.00 3.84
5070 5782 1.910580 AACATTGAGTCCCGCCCGAT 61.911 55.000 0.00 0.00 0.00 4.18
5071 5783 2.515996 GAACATTGAGTCCCGCCCGA 62.516 60.000 0.00 0.00 0.00 5.14
5072 5784 2.046314 AACATTGAGTCCCGCCCG 60.046 61.111 0.00 0.00 0.00 6.13
5073 5785 0.394352 ATGAACATTGAGTCCCGCCC 60.394 55.000 0.00 0.00 0.00 6.13
5074 5786 1.017387 GATGAACATTGAGTCCCGCC 58.983 55.000 0.00 0.00 0.00 6.13
5075 5787 1.667724 CTGATGAACATTGAGTCCCGC 59.332 52.381 0.00 0.00 0.00 6.13
5076 5788 1.667724 GCTGATGAACATTGAGTCCCG 59.332 52.381 0.00 0.00 0.00 5.14
5077 5789 1.667724 CGCTGATGAACATTGAGTCCC 59.332 52.381 0.00 0.00 0.00 4.46
5078 5790 1.667724 CCGCTGATGAACATTGAGTCC 59.332 52.381 0.00 0.00 0.00 3.85
5079 5791 1.063174 GCCGCTGATGAACATTGAGTC 59.937 52.381 0.00 0.00 0.00 3.36
5080 5792 1.089920 GCCGCTGATGAACATTGAGT 58.910 50.000 0.00 0.00 0.00 3.41
5081 5793 0.379669 GGCCGCTGATGAACATTGAG 59.620 55.000 0.00 0.00 0.00 3.02
5082 5794 1.031571 GGGCCGCTGATGAACATTGA 61.032 55.000 0.00 0.00 0.00 2.57
5083 5795 1.434696 GGGCCGCTGATGAACATTG 59.565 57.895 0.00 0.00 0.00 2.82
5084 5796 2.114670 CGGGCCGCTGATGAACATT 61.115 57.895 15.42 0.00 0.00 2.71
5085 5797 2.329539 ATCGGGCCGCTGATGAACAT 62.330 55.000 23.83 2.59 0.00 2.71
5086 5798 3.030168 ATCGGGCCGCTGATGAACA 62.030 57.895 23.83 0.00 0.00 3.18
5087 5799 2.203070 ATCGGGCCGCTGATGAAC 60.203 61.111 23.83 0.00 0.00 3.18
5088 5800 2.203056 CATCGGGCCGCTGATGAA 60.203 61.111 24.50 3.40 43.68 2.57
5089 5801 2.730524 TTCATCGGGCCGCTGATGA 61.731 57.895 30.33 25.32 46.79 2.92
5090 5802 2.203056 TTCATCGGGCCGCTGATG 60.203 61.111 30.33 23.56 42.61 3.07
5091 5803 2.203070 GTTCATCGGGCCGCTGAT 60.203 61.111 30.33 13.04 32.25 2.90
5092 5804 3.371097 GAGTTCATCGGGCCGCTGA 62.371 63.158 26.95 26.95 30.20 4.26
5093 5805 2.892425 GAGTTCATCGGGCCGCTG 60.892 66.667 22.99 22.99 0.00 5.18
5094 5806 3.077556 AGAGTTCATCGGGCCGCT 61.078 61.111 23.83 9.44 0.00 5.52
5095 5807 2.892425 CAGAGTTCATCGGGCCGC 60.892 66.667 23.83 6.74 0.00 6.53
5096 5808 2.892425 GCAGAGTTCATCGGGCCG 60.892 66.667 22.51 22.51 0.00 6.13
5097 5809 1.153086 ATGCAGAGTTCATCGGGCC 60.153 57.895 0.00 0.00 33.66 5.80
5098 5810 0.462581 TGATGCAGAGTTCATCGGGC 60.463 55.000 0.00 0.00 42.32 6.13
5099 5811 1.579698 CTGATGCAGAGTTCATCGGG 58.420 55.000 0.00 0.00 42.32 5.14
5100 5812 0.935898 GCTGATGCAGAGTTCATCGG 59.064 55.000 7.29 7.29 45.51 4.18
5101 5813 0.935898 GGCTGATGCAGAGTTCATCG 59.064 55.000 0.00 0.00 42.32 3.84
5102 5814 1.941294 CTGGCTGATGCAGAGTTCATC 59.059 52.381 0.00 0.00 41.91 2.92
5103 5815 2.017623 GCTGGCTGATGCAGAGTTCAT 61.018 52.381 0.00 0.00 41.91 2.57
5104 5816 0.675837 GCTGGCTGATGCAGAGTTCA 60.676 55.000 0.00 0.00 41.91 3.18
5105 5817 1.703438 CGCTGGCTGATGCAGAGTTC 61.703 60.000 0.00 0.00 41.91 3.01
5106 5818 1.744368 CGCTGGCTGATGCAGAGTT 60.744 57.895 0.00 0.00 41.91 3.01
5107 5819 2.125229 CGCTGGCTGATGCAGAGT 60.125 61.111 0.00 0.00 41.91 3.24
5108 5820 2.172372 GTCGCTGGCTGATGCAGAG 61.172 63.158 0.00 0.00 41.91 3.35
5109 5821 2.125391 GTCGCTGGCTGATGCAGA 60.125 61.111 0.00 0.00 41.91 4.26
5110 5822 2.125229 AGTCGCTGGCTGATGCAG 60.125 61.111 0.00 0.00 41.91 4.41
5111 5823 2.125391 GAGTCGCTGGCTGATGCA 60.125 61.111 0.00 0.00 41.91 3.96
5112 5824 2.967929 ATCGAGTCGCTGGCTGATGC 62.968 60.000 7.92 0.00 38.76 3.91
5113 5825 0.938637 GATCGAGTCGCTGGCTGATG 60.939 60.000 7.92 0.00 0.00 3.07
5114 5826 1.106351 AGATCGAGTCGCTGGCTGAT 61.106 55.000 7.92 0.00 0.00 2.90
5115 5827 1.719725 GAGATCGAGTCGCTGGCTGA 61.720 60.000 7.92 0.00 0.00 4.26
5116 5828 1.299014 GAGATCGAGTCGCTGGCTG 60.299 63.158 7.92 0.00 0.00 4.85
5117 5829 0.179043 TAGAGATCGAGTCGCTGGCT 60.179 55.000 7.92 5.43 37.55 4.75
5118 5830 0.237235 CTAGAGATCGAGTCGCTGGC 59.763 60.000 7.92 0.00 37.55 4.85
5119 5831 0.871722 CCTAGAGATCGAGTCGCTGG 59.128 60.000 7.92 0.87 37.55 4.85
5120 5832 1.872388 TCCTAGAGATCGAGTCGCTG 58.128 55.000 7.92 0.00 37.55 5.18
5121 5833 2.158871 ACTTCCTAGAGATCGAGTCGCT 60.159 50.000 7.92 0.00 40.33 4.93
5122 5834 2.215196 ACTTCCTAGAGATCGAGTCGC 58.785 52.381 7.92 0.00 0.00 5.19
5123 5835 3.872182 TCAACTTCCTAGAGATCGAGTCG 59.128 47.826 6.09 6.09 0.00 4.18
5124 5836 4.261031 GCTCAACTTCCTAGAGATCGAGTC 60.261 50.000 0.00 0.00 0.00 3.36
5125 5837 3.630312 GCTCAACTTCCTAGAGATCGAGT 59.370 47.826 0.00 0.00 0.00 4.18
5126 5838 3.882888 AGCTCAACTTCCTAGAGATCGAG 59.117 47.826 0.00 0.00 0.00 4.04
5127 5839 3.880490 GAGCTCAACTTCCTAGAGATCGA 59.120 47.826 9.40 0.00 35.46 3.59
5128 5840 3.629855 TGAGCTCAACTTCCTAGAGATCG 59.370 47.826 15.67 0.00 45.14 3.69
5129 5841 5.531634 CATGAGCTCAACTTCCTAGAGATC 58.468 45.833 22.50 0.00 43.18 2.75
5130 5842 4.202243 GCATGAGCTCAACTTCCTAGAGAT 60.202 45.833 22.50 0.00 37.91 2.75
5131 5843 3.131933 GCATGAGCTCAACTTCCTAGAGA 59.868 47.826 22.50 0.00 37.91 3.10
5132 5844 3.456280 GCATGAGCTCAACTTCCTAGAG 58.544 50.000 22.50 2.12 37.91 2.43
5133 5845 2.169352 GGCATGAGCTCAACTTCCTAGA 59.831 50.000 22.50 0.00 41.70 2.43
5134 5846 2.559440 GGCATGAGCTCAACTTCCTAG 58.441 52.381 22.50 4.66 41.70 3.02
5135 5847 1.134699 CGGCATGAGCTCAACTTCCTA 60.135 52.381 22.50 0.00 41.70 2.94
5136 5848 0.392193 CGGCATGAGCTCAACTTCCT 60.392 55.000 22.50 0.00 41.70 3.36
5137 5849 1.986575 GCGGCATGAGCTCAACTTCC 61.987 60.000 22.50 16.96 41.70 3.46
5138 5850 1.427020 GCGGCATGAGCTCAACTTC 59.573 57.895 22.50 9.69 41.70 3.01
5139 5851 2.393768 CGCGGCATGAGCTCAACTT 61.394 57.895 22.50 0.40 41.70 2.66
5140 5852 2.816958 CGCGGCATGAGCTCAACT 60.817 61.111 22.50 1.31 41.70 3.16
5141 5853 3.869272 CCGCGGCATGAGCTCAAC 61.869 66.667 22.50 15.79 41.70 3.18
5168 5880 0.677731 ACGACATTGCCACATGGAGG 60.678 55.000 0.87 0.00 37.39 4.30
5169 5881 1.935873 CTACGACATTGCCACATGGAG 59.064 52.381 0.87 0.00 37.39 3.86
5170 5882 1.406751 CCTACGACATTGCCACATGGA 60.407 52.381 0.87 0.00 37.39 3.41
5171 5883 1.016627 CCTACGACATTGCCACATGG 58.983 55.000 0.00 0.00 38.53 3.66
5172 5884 0.378257 GCCTACGACATTGCCACATG 59.622 55.000 0.00 0.00 0.00 3.21
5173 5885 1.089481 CGCCTACGACATTGCCACAT 61.089 55.000 0.00 0.00 43.93 3.21
5174 5886 1.739929 CGCCTACGACATTGCCACA 60.740 57.895 0.00 0.00 43.93 4.17
5175 5887 1.740296 ACGCCTACGACATTGCCAC 60.740 57.895 0.00 0.00 43.93 5.01
5176 5888 1.739929 CACGCCTACGACATTGCCA 60.740 57.895 0.00 0.00 43.93 4.92
5177 5889 0.458889 TACACGCCTACGACATTGCC 60.459 55.000 0.00 0.00 43.93 4.52
5178 5890 0.643820 GTACACGCCTACGACATTGC 59.356 55.000 0.00 0.00 43.93 3.56
5179 5891 1.917955 CTGTACACGCCTACGACATTG 59.082 52.381 0.00 0.00 43.93 2.82
5180 5892 1.734707 GCTGTACACGCCTACGACATT 60.735 52.381 0.00 0.00 43.93 2.71
5181 5893 0.179145 GCTGTACACGCCTACGACAT 60.179 55.000 0.00 0.00 43.93 3.06
5182 5894 1.210931 GCTGTACACGCCTACGACA 59.789 57.895 0.00 0.00 43.93 4.35
5183 5895 1.515736 GGCTGTACACGCCTACGAC 60.516 63.158 21.90 0.00 44.17 4.34
5184 5896 2.879907 GGCTGTACACGCCTACGA 59.120 61.111 21.90 0.00 44.17 3.43
5190 5902 2.452813 CGGACATGGCTGTACACGC 61.453 63.158 0.00 8.31 35.80 5.34
5191 5903 2.452813 GCGGACATGGCTGTACACG 61.453 63.158 9.70 0.00 35.80 4.49
5192 5904 2.106683 GGCGGACATGGCTGTACAC 61.107 63.158 9.70 0.00 35.80 2.90
5193 5905 2.267642 GGCGGACATGGCTGTACA 59.732 61.111 9.70 0.00 35.80 2.90
5194 5906 2.890474 CGGCGGACATGGCTGTAC 60.890 66.667 9.70 1.47 35.14 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.