Multiple sequence alignment - TraesCS1D01G170800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G170800 chr1D 100.000 2096 0 0 1 2096 244443478 244445573 0.000000e+00 3871
1 TraesCS1D01G170800 chr1D 94.713 1759 77 8 349 2093 394178682 394180438 0.000000e+00 2719
2 TraesCS1D01G170800 chr1D 95.525 1162 43 5 935 2093 483922592 483921437 0.000000e+00 1849
3 TraesCS1D01G170800 chr1D 96.264 348 13 0 1 348 244413836 244414183 2.330000e-159 571
4 TraesCS1D01G170800 chr1D 94.828 348 18 0 1 348 244428459 244428806 5.090000e-151 544
5 TraesCS1D01G170800 chr1D 94.828 348 16 2 1 348 244436238 244436583 1.830000e-150 542
6 TraesCS1D01G170800 chr1D 91.404 349 28 2 1 348 278284145 278284492 5.230000e-131 477
7 TraesCS1D01G170800 chr3B 94.986 1755 72 8 349 2093 201506351 201508099 0.000000e+00 2739
8 TraesCS1D01G170800 chr6D 94.698 1754 76 9 349 2093 431399802 431401547 0.000000e+00 2708
9 TraesCS1D01G170800 chrUn 94.486 1759 78 9 349 2093 317473418 317471665 0.000000e+00 2693
10 TraesCS1D01G170800 chrUn 95.085 1119 40 8 349 1454 404958006 404959122 0.000000e+00 1748
11 TraesCS1D01G170800 chrUn 95.362 733 21 6 349 1073 53261865 53261138 0.000000e+00 1153
12 TraesCS1D01G170800 chr2D 94.349 1752 81 10 349 2093 334225697 334227437 0.000000e+00 2671
13 TraesCS1D01G170800 chr2D 95.076 264 12 1 1830 2093 141098401 141098139 4.160000e-112 414
14 TraesCS1D01G170800 chr5D 94.067 1753 84 9 349 2093 6208042 6206302 0.000000e+00 2643
15 TraesCS1D01G170800 chr5D 95.049 1333 52 8 753 2072 554200515 554201846 0.000000e+00 2084
16 TraesCS1D01G170800 chr2A 93.846 1755 78 11 349 2093 335826051 335827785 0.000000e+00 2615
17 TraesCS1D01G170800 chr2A 93.614 642 29 5 349 983 276441301 276440665 0.000000e+00 948
18 TraesCS1D01G170800 chr7D 92.506 774 46 6 349 1115 88605360 88606128 0.000000e+00 1098
19 TraesCS1D01G170800 chr7D 92.264 349 24 3 1 348 304469929 304470275 1.870000e-135 492
20 TraesCS1D01G170800 chr7D 92.264 349 24 3 1 348 513862286 513862632 1.870000e-135 492
21 TraesCS1D01G170800 chr7D 91.977 349 26 2 1 348 418292446 418292099 2.420000e-134 488
22 TraesCS1D01G170800 chr1A 94.515 711 26 6 349 1050 256026395 256025689 0.000000e+00 1085
23 TraesCS1D01G170800 chr5A 94.581 609 24 5 349 949 684325360 684325967 0.000000e+00 933
24 TraesCS1D01G170800 chr5B 92.308 351 22 5 1 348 240565509 240565857 5.190000e-136 494
25 TraesCS1D01G170800 chr4A 91.193 352 28 3 1 351 180793314 180793663 1.880000e-130 475


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G170800 chr1D 244443478 244445573 2095 False 3871 3871 100.000 1 2096 1 chr1D.!!$F4 2095
1 TraesCS1D01G170800 chr1D 394178682 394180438 1756 False 2719 2719 94.713 349 2093 1 chr1D.!!$F6 1744
2 TraesCS1D01G170800 chr1D 483921437 483922592 1155 True 1849 1849 95.525 935 2093 1 chr1D.!!$R1 1158
3 TraesCS1D01G170800 chr3B 201506351 201508099 1748 False 2739 2739 94.986 349 2093 1 chr3B.!!$F1 1744
4 TraesCS1D01G170800 chr6D 431399802 431401547 1745 False 2708 2708 94.698 349 2093 1 chr6D.!!$F1 1744
5 TraesCS1D01G170800 chrUn 317471665 317473418 1753 True 2693 2693 94.486 349 2093 1 chrUn.!!$R2 1744
6 TraesCS1D01G170800 chrUn 404958006 404959122 1116 False 1748 1748 95.085 349 1454 1 chrUn.!!$F1 1105
7 TraesCS1D01G170800 chrUn 53261138 53261865 727 True 1153 1153 95.362 349 1073 1 chrUn.!!$R1 724
8 TraesCS1D01G170800 chr2D 334225697 334227437 1740 False 2671 2671 94.349 349 2093 1 chr2D.!!$F1 1744
9 TraesCS1D01G170800 chr5D 6206302 6208042 1740 True 2643 2643 94.067 349 2093 1 chr5D.!!$R1 1744
10 TraesCS1D01G170800 chr5D 554200515 554201846 1331 False 2084 2084 95.049 753 2072 1 chr5D.!!$F1 1319
11 TraesCS1D01G170800 chr2A 335826051 335827785 1734 False 2615 2615 93.846 349 2093 1 chr2A.!!$F1 1744
12 TraesCS1D01G170800 chr2A 276440665 276441301 636 True 948 948 93.614 349 983 1 chr2A.!!$R1 634
13 TraesCS1D01G170800 chr7D 88605360 88606128 768 False 1098 1098 92.506 349 1115 1 chr7D.!!$F1 766
14 TraesCS1D01G170800 chr1A 256025689 256026395 706 True 1085 1085 94.515 349 1050 1 chr1A.!!$R1 701
15 TraesCS1D01G170800 chr5A 684325360 684325967 607 False 933 933 94.581 349 949 1 chr5A.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.481128 GGGTTTGAGAGGGTTTGGGA 59.519 55.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1394 1.137872 GATCCAACTGATCCTCACGCT 59.862 52.381 0.0 0.0 43.53 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.605951 AATATTGCATGGGACTTAGGAATATTT 57.394 29.630 0.00 0.00 40.01 1.40
27 28 7.919385 ATTGCATGGGACTTAGGAATATTTT 57.081 32.000 0.00 0.00 0.00 1.82
28 29 7.732222 TTGCATGGGACTTAGGAATATTTTT 57.268 32.000 0.00 0.00 0.00 1.94
29 30 7.111247 TGCATGGGACTTAGGAATATTTTTG 57.889 36.000 0.00 0.00 0.00 2.44
30 31 5.985530 GCATGGGACTTAGGAATATTTTTGC 59.014 40.000 0.00 0.00 0.00 3.68
31 32 6.406849 GCATGGGACTTAGGAATATTTTTGCA 60.407 38.462 0.00 0.00 0.00 4.08
32 33 7.687592 GCATGGGACTTAGGAATATTTTTGCAT 60.688 37.037 0.00 0.00 0.00 3.96
33 34 8.859090 CATGGGACTTAGGAATATTTTTGCATA 58.141 33.333 0.00 0.00 0.00 3.14
34 35 9.605951 ATGGGACTTAGGAATATTTTTGCATAT 57.394 29.630 0.00 0.00 0.00 1.78
35 36 9.077885 TGGGACTTAGGAATATTTTTGCATATC 57.922 33.333 0.00 0.00 0.00 1.63
36 37 8.523658 GGGACTTAGGAATATTTTTGCATATCC 58.476 37.037 0.00 0.00 0.00 2.59
37 38 9.077885 GGACTTAGGAATATTTTTGCATATCCA 57.922 33.333 0.00 0.00 0.00 3.41
43 44 9.822185 AGGAATATTTTTGCATATCCAAGTTTC 57.178 29.630 0.00 0.00 0.00 2.78
44 45 9.598517 GGAATATTTTTGCATATCCAAGTTTCA 57.401 29.630 0.00 0.00 0.00 2.69
50 51 8.954950 TTTTGCATATCCAAGTTTCAAAAAGA 57.045 26.923 0.00 0.00 31.60 2.52
51 52 9.558396 TTTTGCATATCCAAGTTTCAAAAAGAT 57.442 25.926 0.00 0.00 31.60 2.40
53 54 9.859427 TTGCATATCCAAGTTTCAAAAAGATAG 57.141 29.630 0.00 0.00 0.00 2.08
54 55 8.469200 TGCATATCCAAGTTTCAAAAAGATAGG 58.531 33.333 0.00 0.00 0.00 2.57
55 56 8.686334 GCATATCCAAGTTTCAAAAAGATAGGA 58.314 33.333 0.00 0.00 0.00 2.94
57 58 7.709149 ATCCAAGTTTCAAAAAGATAGGAGG 57.291 36.000 0.00 0.00 0.00 4.30
58 59 6.848069 TCCAAGTTTCAAAAAGATAGGAGGA 58.152 36.000 0.00 0.00 0.00 3.71
59 60 7.470192 TCCAAGTTTCAAAAAGATAGGAGGAT 58.530 34.615 0.00 0.00 0.00 3.24
60 61 7.611855 TCCAAGTTTCAAAAAGATAGGAGGATC 59.388 37.037 0.00 0.00 0.00 3.36
61 62 7.613411 CCAAGTTTCAAAAAGATAGGAGGATCT 59.387 37.037 0.00 0.00 37.81 2.75
62 63 8.672815 CAAGTTTCAAAAAGATAGGAGGATCTC 58.327 37.037 0.00 0.00 35.01 2.75
63 64 8.156822 AGTTTCAAAAAGATAGGAGGATCTCT 57.843 34.615 0.00 0.00 35.01 3.10
64 65 8.046107 AGTTTCAAAAAGATAGGAGGATCTCTG 58.954 37.037 0.00 0.00 35.01 3.35
65 66 6.491714 TCAAAAAGATAGGAGGATCTCTGG 57.508 41.667 0.00 0.00 35.01 3.86
66 67 5.367937 TCAAAAAGATAGGAGGATCTCTGGG 59.632 44.000 0.00 0.00 35.01 4.45
67 68 4.841813 AAAGATAGGAGGATCTCTGGGA 57.158 45.455 0.00 0.00 35.01 4.37
68 69 4.841813 AAGATAGGAGGATCTCTGGGAA 57.158 45.455 0.00 0.00 35.01 3.97
69 70 4.126520 AGATAGGAGGATCTCTGGGAAC 57.873 50.000 0.00 0.00 29.85 3.62
70 71 3.469006 AGATAGGAGGATCTCTGGGAACA 59.531 47.826 0.00 0.00 29.85 3.18
71 72 2.649742 AGGAGGATCTCTGGGAACAA 57.350 50.000 0.00 0.00 35.46 2.83
72 73 3.142579 AGGAGGATCTCTGGGAACAAT 57.857 47.619 0.00 0.00 35.46 2.71
73 74 3.468850 AGGAGGATCTCTGGGAACAATT 58.531 45.455 0.00 0.00 35.46 2.32
74 75 3.201708 AGGAGGATCTCTGGGAACAATTG 59.798 47.826 3.24 3.24 35.46 2.32
75 76 3.549794 GAGGATCTCTGGGAACAATTGG 58.450 50.000 10.83 0.00 42.06 3.16
76 77 2.243221 AGGATCTCTGGGAACAATTGGG 59.757 50.000 10.83 0.00 42.06 4.12
77 78 2.242196 GGATCTCTGGGAACAATTGGGA 59.758 50.000 10.83 0.00 42.06 4.37
78 79 3.549794 GATCTCTGGGAACAATTGGGAG 58.450 50.000 10.83 7.28 42.06 4.30
79 80 1.635487 TCTCTGGGAACAATTGGGAGG 59.365 52.381 10.83 0.00 42.06 4.30
80 81 1.635487 CTCTGGGAACAATTGGGAGGA 59.365 52.381 10.83 0.00 42.06 3.71
81 82 2.243221 CTCTGGGAACAATTGGGAGGAT 59.757 50.000 10.83 0.00 42.06 3.24
82 83 2.242196 TCTGGGAACAATTGGGAGGATC 59.758 50.000 10.83 0.00 42.06 3.36
83 84 1.999295 TGGGAACAATTGGGAGGATCA 59.001 47.619 10.83 0.00 37.44 2.92
84 85 2.381618 TGGGAACAATTGGGAGGATCAA 59.618 45.455 10.83 0.00 37.44 2.57
85 86 2.760650 GGGAACAATTGGGAGGATCAAC 59.239 50.000 10.83 0.00 36.25 3.18
86 87 3.430453 GGAACAATTGGGAGGATCAACA 58.570 45.455 10.83 0.00 36.25 3.33
87 88 3.445096 GGAACAATTGGGAGGATCAACAG 59.555 47.826 10.83 0.00 36.25 3.16
88 89 4.335416 GAACAATTGGGAGGATCAACAGA 58.665 43.478 10.83 0.00 36.25 3.41
89 90 4.598036 ACAATTGGGAGGATCAACAGAT 57.402 40.909 10.83 0.00 36.25 2.90
90 91 4.530875 ACAATTGGGAGGATCAACAGATC 58.469 43.478 10.83 0.00 37.93 2.75
91 92 4.018141 ACAATTGGGAGGATCAACAGATCA 60.018 41.667 10.83 0.00 39.93 2.92
92 93 4.868172 ATTGGGAGGATCAACAGATCAA 57.132 40.909 7.67 0.00 39.93 2.57
93 94 4.656100 TTGGGAGGATCAACAGATCAAA 57.344 40.909 7.67 0.00 39.93 2.69
94 95 4.226427 TGGGAGGATCAACAGATCAAAG 57.774 45.455 7.67 0.00 39.93 2.77
95 96 3.845992 TGGGAGGATCAACAGATCAAAGA 59.154 43.478 7.67 0.00 39.93 2.52
96 97 4.289410 TGGGAGGATCAACAGATCAAAGAA 59.711 41.667 7.67 0.00 39.93 2.52
97 98 5.222109 TGGGAGGATCAACAGATCAAAGAAA 60.222 40.000 7.67 0.00 39.93 2.52
98 99 5.711976 GGGAGGATCAACAGATCAAAGAAAA 59.288 40.000 7.67 0.00 39.93 2.29
99 100 6.379417 GGGAGGATCAACAGATCAAAGAAAAT 59.621 38.462 7.67 0.00 39.93 1.82
100 101 7.256286 GGAGGATCAACAGATCAAAGAAAATG 58.744 38.462 7.67 0.00 39.93 2.32
101 102 7.121759 GGAGGATCAACAGATCAAAGAAAATGA 59.878 37.037 7.67 0.00 39.93 2.57
102 103 8.591114 AGGATCAACAGATCAAAGAAAATGAT 57.409 30.769 7.67 0.00 39.93 2.45
103 104 8.467598 AGGATCAACAGATCAAAGAAAATGATG 58.532 33.333 7.67 0.00 39.93 3.07
104 105 7.705325 GGATCAACAGATCAAAGAAAATGATGG 59.295 37.037 7.67 0.00 39.93 3.51
105 106 6.392354 TCAACAGATCAAAGAAAATGATGGC 58.608 36.000 0.00 0.00 37.64 4.40
106 107 6.209986 TCAACAGATCAAAGAAAATGATGGCT 59.790 34.615 0.00 0.00 37.64 4.75
107 108 6.205101 ACAGATCAAAGAAAATGATGGCTC 57.795 37.500 0.00 0.00 37.64 4.70
108 109 5.126707 ACAGATCAAAGAAAATGATGGCTCC 59.873 40.000 0.00 0.00 37.64 4.70
109 110 5.360144 CAGATCAAAGAAAATGATGGCTCCT 59.640 40.000 0.00 0.00 37.64 3.69
110 111 5.956563 AGATCAAAGAAAATGATGGCTCCTT 59.043 36.000 0.00 0.00 37.64 3.36
111 112 6.439692 AGATCAAAGAAAATGATGGCTCCTTT 59.560 34.615 0.00 0.00 37.64 3.11
112 113 5.786311 TCAAAGAAAATGATGGCTCCTTTG 58.214 37.500 0.00 0.00 39.88 2.77
113 114 5.305128 TCAAAGAAAATGATGGCTCCTTTGT 59.695 36.000 0.00 0.00 39.65 2.83
114 115 6.493115 TCAAAGAAAATGATGGCTCCTTTGTA 59.507 34.615 0.00 0.00 39.65 2.41
115 116 7.178983 TCAAAGAAAATGATGGCTCCTTTGTAT 59.821 33.333 0.00 0.00 39.65 2.29
116 117 7.486407 AAGAAAATGATGGCTCCTTTGTATT 57.514 32.000 0.00 0.00 0.00 1.89
117 118 7.105241 AGAAAATGATGGCTCCTTTGTATTC 57.895 36.000 0.00 0.00 0.00 1.75
118 119 6.664816 AGAAAATGATGGCTCCTTTGTATTCA 59.335 34.615 0.00 0.00 0.00 2.57
119 120 5.841957 AATGATGGCTCCTTTGTATTCAC 57.158 39.130 0.00 0.00 0.00 3.18
120 121 4.299586 TGATGGCTCCTTTGTATTCACA 57.700 40.909 0.00 0.00 0.00 3.58
121 122 4.661222 TGATGGCTCCTTTGTATTCACAA 58.339 39.130 0.00 0.00 42.93 3.33
133 134 6.463995 TTGTATTCACAAAGGGCATATTCC 57.536 37.500 0.00 0.00 41.69 3.01
134 135 5.514169 TGTATTCACAAAGGGCATATTCCA 58.486 37.500 0.00 0.00 0.00 3.53
135 136 5.954752 TGTATTCACAAAGGGCATATTCCAA 59.045 36.000 0.00 0.00 0.00 3.53
136 137 6.610830 TGTATTCACAAAGGGCATATTCCAAT 59.389 34.615 0.00 0.00 0.00 3.16
137 138 6.564557 ATTCACAAAGGGCATATTCCAATT 57.435 33.333 0.00 0.00 0.00 2.32
138 139 5.596836 TCACAAAGGGCATATTCCAATTC 57.403 39.130 0.00 0.00 0.00 2.17
139 140 4.405358 TCACAAAGGGCATATTCCAATTCC 59.595 41.667 0.00 0.00 0.00 3.01
140 141 3.384467 ACAAAGGGCATATTCCAATTCCG 59.616 43.478 0.00 0.00 0.00 4.30
141 142 3.593442 AAGGGCATATTCCAATTCCGA 57.407 42.857 0.00 0.00 0.00 4.55
142 143 3.593442 AGGGCATATTCCAATTCCGAA 57.407 42.857 0.00 0.00 0.00 4.30
143 144 3.909732 AGGGCATATTCCAATTCCGAAA 58.090 40.909 0.00 0.00 0.00 3.46
144 145 4.285863 AGGGCATATTCCAATTCCGAAAA 58.714 39.130 0.00 0.00 0.00 2.29
145 146 4.901250 AGGGCATATTCCAATTCCGAAAAT 59.099 37.500 0.00 0.00 0.00 1.82
146 147 5.366477 AGGGCATATTCCAATTCCGAAAATT 59.634 36.000 0.00 0.00 0.00 1.82
147 148 5.466393 GGGCATATTCCAATTCCGAAAATTG 59.534 40.000 13.29 13.29 37.38 2.32
159 160 6.673839 TTCCGAAAATTGGAATTAGGGTTT 57.326 33.333 0.00 0.00 40.51 3.27
160 161 6.031751 TCCGAAAATTGGAATTAGGGTTTG 57.968 37.500 0.00 0.00 30.98 2.93
161 162 5.775701 TCCGAAAATTGGAATTAGGGTTTGA 59.224 36.000 0.00 0.00 30.98 2.69
162 163 6.071616 TCCGAAAATTGGAATTAGGGTTTGAG 60.072 38.462 0.00 0.00 30.98 3.02
163 164 6.071616 CCGAAAATTGGAATTAGGGTTTGAGA 60.072 38.462 0.00 0.00 0.00 3.27
164 165 7.029563 CGAAAATTGGAATTAGGGTTTGAGAG 58.970 38.462 0.00 0.00 0.00 3.20
165 166 6.857437 AAATTGGAATTAGGGTTTGAGAGG 57.143 37.500 0.00 0.00 0.00 3.69
166 167 4.316025 TTGGAATTAGGGTTTGAGAGGG 57.684 45.455 0.00 0.00 0.00 4.30
167 168 3.265489 TGGAATTAGGGTTTGAGAGGGT 58.735 45.455 0.00 0.00 0.00 4.34
168 169 3.660669 TGGAATTAGGGTTTGAGAGGGTT 59.339 43.478 0.00 0.00 0.00 4.11
169 170 4.107311 TGGAATTAGGGTTTGAGAGGGTTT 59.893 41.667 0.00 0.00 0.00 3.27
170 171 4.462834 GGAATTAGGGTTTGAGAGGGTTTG 59.537 45.833 0.00 0.00 0.00 2.93
171 172 3.518992 TTAGGGTTTGAGAGGGTTTGG 57.481 47.619 0.00 0.00 0.00 3.28
172 173 0.482887 AGGGTTTGAGAGGGTTTGGG 59.517 55.000 0.00 0.00 0.00 4.12
173 174 0.481128 GGGTTTGAGAGGGTTTGGGA 59.519 55.000 0.00 0.00 0.00 4.37
174 175 1.077169 GGGTTTGAGAGGGTTTGGGAT 59.923 52.381 0.00 0.00 0.00 3.85
175 176 2.171003 GGTTTGAGAGGGTTTGGGATG 58.829 52.381 0.00 0.00 0.00 3.51
176 177 2.225017 GGTTTGAGAGGGTTTGGGATGA 60.225 50.000 0.00 0.00 0.00 2.92
177 178 3.564352 GGTTTGAGAGGGTTTGGGATGAT 60.564 47.826 0.00 0.00 0.00 2.45
178 179 3.370840 TTGAGAGGGTTTGGGATGATG 57.629 47.619 0.00 0.00 0.00 3.07
179 180 1.064463 TGAGAGGGTTTGGGATGATGC 60.064 52.381 0.00 0.00 0.00 3.91
180 181 1.002069 AGAGGGTTTGGGATGATGCA 58.998 50.000 0.00 0.00 0.00 3.96
181 182 1.358787 AGAGGGTTTGGGATGATGCAA 59.641 47.619 0.00 0.00 0.00 4.08
182 183 2.178580 GAGGGTTTGGGATGATGCAAA 58.821 47.619 0.00 0.00 0.00 3.68
183 184 2.767960 GAGGGTTTGGGATGATGCAAAT 59.232 45.455 0.00 0.00 0.00 2.32
184 185 3.960102 GAGGGTTTGGGATGATGCAAATA 59.040 43.478 0.00 0.00 0.00 1.40
185 186 4.360889 AGGGTTTGGGATGATGCAAATAA 58.639 39.130 0.00 0.00 0.00 1.40
186 187 4.406649 AGGGTTTGGGATGATGCAAATAAG 59.593 41.667 0.00 0.00 0.00 1.73
187 188 4.443315 GGGTTTGGGATGATGCAAATAAGG 60.443 45.833 0.00 0.00 0.00 2.69
188 189 4.162131 GGTTTGGGATGATGCAAATAAGGT 59.838 41.667 0.00 0.00 0.00 3.50
189 190 5.351458 GTTTGGGATGATGCAAATAAGGTC 58.649 41.667 0.00 0.00 0.00 3.85
190 191 4.524802 TGGGATGATGCAAATAAGGTCT 57.475 40.909 0.00 0.00 0.00 3.85
191 192 4.870636 TGGGATGATGCAAATAAGGTCTT 58.129 39.130 0.00 0.00 0.00 3.01
192 193 4.646040 TGGGATGATGCAAATAAGGTCTTG 59.354 41.667 0.00 0.00 0.00 3.02
193 194 4.500375 GGGATGATGCAAATAAGGTCTTGC 60.500 45.833 0.00 0.00 46.53 4.01
194 195 4.500375 GGATGATGCAAATAAGGTCTTGCC 60.500 45.833 0.00 0.00 45.92 4.52
195 196 2.760092 TGATGCAAATAAGGTCTTGCCC 59.240 45.455 0.00 0.00 45.92 5.36
196 197 2.300956 TGCAAATAAGGTCTTGCCCA 57.699 45.000 4.48 0.00 45.92 5.36
197 198 1.892474 TGCAAATAAGGTCTTGCCCAC 59.108 47.619 4.48 0.00 45.92 4.61
198 199 2.171003 GCAAATAAGGTCTTGCCCACT 58.829 47.619 0.00 0.00 41.69 4.00
199 200 2.094545 GCAAATAAGGTCTTGCCCACTG 60.095 50.000 0.00 0.00 41.69 3.66
200 201 3.420893 CAAATAAGGTCTTGCCCACTGA 58.579 45.455 0.00 0.00 38.26 3.41
201 202 2.789409 ATAAGGTCTTGCCCACTGAC 57.211 50.000 0.00 0.00 38.26 3.51
202 203 1.429930 TAAGGTCTTGCCCACTGACA 58.570 50.000 0.00 0.00 38.26 3.58
203 204 0.550914 AAGGTCTTGCCCACTGACAA 59.449 50.000 0.00 0.00 38.26 3.18
204 205 0.550914 AGGTCTTGCCCACTGACAAA 59.449 50.000 0.00 0.00 38.26 2.83
205 206 0.954452 GGTCTTGCCCACTGACAAAG 59.046 55.000 0.00 0.00 32.84 2.77
206 207 1.476833 GGTCTTGCCCACTGACAAAGA 60.477 52.381 0.00 0.00 32.84 2.52
207 208 1.604278 GTCTTGCCCACTGACAAAGAC 59.396 52.381 0.00 0.00 0.00 3.01
208 209 1.211703 TCTTGCCCACTGACAAAGACA 59.788 47.619 0.00 0.00 0.00 3.41
209 210 2.158623 TCTTGCCCACTGACAAAGACAT 60.159 45.455 0.00 0.00 0.00 3.06
210 211 1.608055 TGCCCACTGACAAAGACATG 58.392 50.000 0.00 0.00 0.00 3.21
211 212 1.142667 TGCCCACTGACAAAGACATGA 59.857 47.619 0.00 0.00 0.00 3.07
212 213 1.808945 GCCCACTGACAAAGACATGAG 59.191 52.381 0.00 0.00 0.00 2.90
213 214 1.808945 CCCACTGACAAAGACATGAGC 59.191 52.381 0.00 0.00 0.00 4.26
214 215 2.497138 CCACTGACAAAGACATGAGCA 58.503 47.619 0.00 0.00 0.00 4.26
215 216 2.880268 CCACTGACAAAGACATGAGCAA 59.120 45.455 0.00 0.00 0.00 3.91
216 217 3.058432 CCACTGACAAAGACATGAGCAAG 60.058 47.826 0.00 0.00 0.00 4.01
217 218 3.058432 CACTGACAAAGACATGAGCAAGG 60.058 47.826 0.00 0.00 0.00 3.61
218 219 3.144506 CTGACAAAGACATGAGCAAGGT 58.855 45.455 0.00 0.00 0.00 3.50
219 220 3.554934 TGACAAAGACATGAGCAAGGTT 58.445 40.909 0.00 0.00 0.00 3.50
220 221 3.953612 TGACAAAGACATGAGCAAGGTTT 59.046 39.130 0.00 0.00 0.00 3.27
221 222 4.402155 TGACAAAGACATGAGCAAGGTTTT 59.598 37.500 0.00 0.00 0.00 2.43
222 223 5.592282 TGACAAAGACATGAGCAAGGTTTTA 59.408 36.000 0.00 0.00 0.00 1.52
223 224 6.096141 TGACAAAGACATGAGCAAGGTTTTAA 59.904 34.615 0.00 0.00 0.00 1.52
224 225 6.872920 ACAAAGACATGAGCAAGGTTTTAAA 58.127 32.000 0.00 0.00 0.00 1.52
225 226 7.327214 ACAAAGACATGAGCAAGGTTTTAAAA 58.673 30.769 0.00 0.00 0.00 1.52
226 227 7.821846 ACAAAGACATGAGCAAGGTTTTAAAAA 59.178 29.630 1.31 0.00 0.00 1.94
227 228 8.330302 CAAAGACATGAGCAAGGTTTTAAAAAG 58.670 33.333 1.31 0.00 0.00 2.27
228 229 6.515832 AGACATGAGCAAGGTTTTAAAAAGG 58.484 36.000 1.31 0.00 0.00 3.11
229 230 6.098266 AGACATGAGCAAGGTTTTAAAAAGGT 59.902 34.615 1.31 0.00 0.00 3.50
230 231 6.649155 ACATGAGCAAGGTTTTAAAAAGGTT 58.351 32.000 1.31 0.00 0.00 3.50
231 232 6.538381 ACATGAGCAAGGTTTTAAAAAGGTTG 59.462 34.615 1.31 7.79 0.00 3.77
232 233 6.287589 TGAGCAAGGTTTTAAAAAGGTTGA 57.712 33.333 16.62 0.91 0.00 3.18
233 234 6.702329 TGAGCAAGGTTTTAAAAAGGTTGAA 58.298 32.000 16.62 4.63 0.00 2.69
234 235 7.162082 TGAGCAAGGTTTTAAAAAGGTTGAAA 58.838 30.769 16.62 4.40 0.00 2.69
235 236 7.661847 TGAGCAAGGTTTTAAAAAGGTTGAAAA 59.338 29.630 16.62 4.16 0.00 2.29
236 237 8.574251 AGCAAGGTTTTAAAAAGGTTGAAAAT 57.426 26.923 16.62 3.17 31.13 1.82
237 238 8.458052 AGCAAGGTTTTAAAAAGGTTGAAAATG 58.542 29.630 16.62 3.26 31.13 2.32
238 239 8.454894 GCAAGGTTTTAAAAAGGTTGAAAATGA 58.545 29.630 16.62 0.00 31.13 2.57
239 240 9.767684 CAAGGTTTTAAAAAGGTTGAAAATGAC 57.232 29.630 1.31 0.00 31.13 3.06
240 241 9.508642 AAGGTTTTAAAAAGGTTGAAAATGACA 57.491 25.926 1.31 0.00 31.13 3.58
241 242 9.508642 AGGTTTTAAAAAGGTTGAAAATGACAA 57.491 25.926 1.31 0.00 31.13 3.18
242 243 9.767684 GGTTTTAAAAAGGTTGAAAATGACAAG 57.232 29.630 1.31 0.00 31.13 3.16
249 250 9.750125 AAAAGGTTGAAAATGACAAGAATAGTC 57.250 29.630 0.00 0.00 36.55 2.59
260 261 7.660030 TGACAAGAATAGTCATAGTCATCCA 57.340 36.000 7.85 0.00 40.80 3.41
261 262 8.078060 TGACAAGAATAGTCATAGTCATCCAA 57.922 34.615 7.85 0.00 40.80 3.53
262 263 7.981789 TGACAAGAATAGTCATAGTCATCCAAC 59.018 37.037 7.85 0.00 40.80 3.77
263 264 7.851228 ACAAGAATAGTCATAGTCATCCAACA 58.149 34.615 0.00 0.00 0.00 3.33
264 265 8.321353 ACAAGAATAGTCATAGTCATCCAACAA 58.679 33.333 0.00 0.00 0.00 2.83
265 266 9.166173 CAAGAATAGTCATAGTCATCCAACAAA 57.834 33.333 0.00 0.00 0.00 2.83
266 267 8.723942 AGAATAGTCATAGTCATCCAACAAAC 57.276 34.615 0.00 0.00 0.00 2.93
267 268 8.543774 AGAATAGTCATAGTCATCCAACAAACT 58.456 33.333 0.00 0.00 0.00 2.66
268 269 8.723942 AATAGTCATAGTCATCCAACAAACTC 57.276 34.615 0.00 0.00 0.00 3.01
269 270 6.114187 AGTCATAGTCATCCAACAAACTCA 57.886 37.500 0.00 0.00 0.00 3.41
270 271 6.169094 AGTCATAGTCATCCAACAAACTCAG 58.831 40.000 0.00 0.00 0.00 3.35
271 272 5.352569 GTCATAGTCATCCAACAAACTCAGG 59.647 44.000 0.00 0.00 0.00 3.86
272 273 5.248248 TCATAGTCATCCAACAAACTCAGGA 59.752 40.000 0.00 0.00 34.12 3.86
273 274 4.013267 AGTCATCCAACAAACTCAGGAG 57.987 45.455 0.00 0.00 32.91 3.69
274 275 3.648067 AGTCATCCAACAAACTCAGGAGA 59.352 43.478 2.79 0.00 32.91 3.71
275 276 4.103153 AGTCATCCAACAAACTCAGGAGAA 59.897 41.667 2.79 0.00 32.91 2.87
276 277 4.821805 GTCATCCAACAAACTCAGGAGAAA 59.178 41.667 2.79 0.00 32.91 2.52
277 278 5.049129 GTCATCCAACAAACTCAGGAGAAAG 60.049 44.000 2.79 0.00 32.91 2.62
278 279 4.771114 TCCAACAAACTCAGGAGAAAGA 57.229 40.909 2.79 0.00 0.00 2.52
279 280 5.310409 TCCAACAAACTCAGGAGAAAGAT 57.690 39.130 2.79 0.00 0.00 2.40
280 281 5.694995 TCCAACAAACTCAGGAGAAAGATT 58.305 37.500 2.79 0.00 0.00 2.40
281 282 6.129179 TCCAACAAACTCAGGAGAAAGATTT 58.871 36.000 2.79 0.00 0.00 2.17
282 283 6.607198 TCCAACAAACTCAGGAGAAAGATTTT 59.393 34.615 2.79 0.00 0.00 1.82
283 284 6.698766 CCAACAAACTCAGGAGAAAGATTTTG 59.301 38.462 2.79 5.04 39.12 2.44
284 285 7.416664 CCAACAAACTCAGGAGAAAGATTTTGA 60.417 37.037 2.79 0.00 36.87 2.69
285 286 7.645058 ACAAACTCAGGAGAAAGATTTTGAA 57.355 32.000 2.79 0.00 36.87 2.69
286 287 8.066612 ACAAACTCAGGAGAAAGATTTTGAAA 57.933 30.769 2.79 0.00 36.87 2.69
287 288 8.531146 ACAAACTCAGGAGAAAGATTTTGAAAA 58.469 29.630 2.79 0.00 36.87 2.29
288 289 9.369904 CAAACTCAGGAGAAAGATTTTGAAAAA 57.630 29.630 2.79 0.00 36.87 1.94
290 291 9.538508 AACTCAGGAGAAAGATTTTGAAAAATG 57.461 29.630 5.76 0.00 38.64 2.32
291 292 8.917088 ACTCAGGAGAAAGATTTTGAAAAATGA 58.083 29.630 5.76 0.00 38.64 2.57
292 293 9.408069 CTCAGGAGAAAGATTTTGAAAAATGAG 57.592 33.333 5.76 1.78 38.64 2.90
293 294 8.917088 TCAGGAGAAAGATTTTGAAAAATGAGT 58.083 29.630 5.76 0.00 38.64 3.41
294 295 8.975439 CAGGAGAAAGATTTTGAAAAATGAGTG 58.025 33.333 5.76 0.00 38.64 3.51
295 296 8.699130 AGGAGAAAGATTTTGAAAAATGAGTGT 58.301 29.630 5.76 0.00 38.64 3.55
296 297 8.972349 GGAGAAAGATTTTGAAAAATGAGTGTC 58.028 33.333 5.76 0.06 38.64 3.67
297 298 9.520204 GAGAAAGATTTTGAAAAATGAGTGTCA 57.480 29.630 5.76 0.00 38.64 3.58
298 299 9.525409 AGAAAGATTTTGAAAAATGAGTGTCAG 57.475 29.630 5.76 0.00 38.64 3.51
299 300 8.652810 AAAGATTTTGAAAAATGAGTGTCAGG 57.347 30.769 5.76 0.00 38.64 3.86
300 301 7.587037 AGATTTTGAAAAATGAGTGTCAGGA 57.413 32.000 5.76 0.00 38.64 3.86
301 302 8.010733 AGATTTTGAAAAATGAGTGTCAGGAA 57.989 30.769 5.76 0.00 38.64 3.36
302 303 8.139989 AGATTTTGAAAAATGAGTGTCAGGAAG 58.860 33.333 5.76 0.00 38.64 3.46
303 304 5.772825 TTGAAAAATGAGTGTCAGGAAGG 57.227 39.130 0.00 0.00 0.00 3.46
304 305 5.047566 TGAAAAATGAGTGTCAGGAAGGA 57.952 39.130 0.00 0.00 0.00 3.36
305 306 5.445069 TGAAAAATGAGTGTCAGGAAGGAA 58.555 37.500 0.00 0.00 0.00 3.36
306 307 6.070656 TGAAAAATGAGTGTCAGGAAGGAAT 58.929 36.000 0.00 0.00 0.00 3.01
307 308 7.230747 TGAAAAATGAGTGTCAGGAAGGAATA 58.769 34.615 0.00 0.00 0.00 1.75
308 309 7.723616 TGAAAAATGAGTGTCAGGAAGGAATAA 59.276 33.333 0.00 0.00 0.00 1.40
309 310 7.454260 AAAATGAGTGTCAGGAAGGAATAAC 57.546 36.000 0.00 0.00 0.00 1.89
310 311 5.762179 ATGAGTGTCAGGAAGGAATAACA 57.238 39.130 0.00 0.00 0.00 2.41
311 312 5.560722 TGAGTGTCAGGAAGGAATAACAA 57.439 39.130 0.00 0.00 0.00 2.83
312 313 5.305585 TGAGTGTCAGGAAGGAATAACAAC 58.694 41.667 0.00 0.00 0.00 3.32
313 314 5.163248 TGAGTGTCAGGAAGGAATAACAACA 60.163 40.000 0.00 0.00 0.00 3.33
314 315 5.063880 AGTGTCAGGAAGGAATAACAACAC 58.936 41.667 0.00 0.00 35.81 3.32
315 316 4.819630 GTGTCAGGAAGGAATAACAACACA 59.180 41.667 0.00 0.00 35.69 3.72
316 317 5.298276 GTGTCAGGAAGGAATAACAACACAA 59.702 40.000 0.00 0.00 35.69 3.33
317 318 5.888724 TGTCAGGAAGGAATAACAACACAAA 59.111 36.000 0.00 0.00 0.00 2.83
318 319 6.378564 TGTCAGGAAGGAATAACAACACAAAA 59.621 34.615 0.00 0.00 0.00 2.44
319 320 7.093727 TGTCAGGAAGGAATAACAACACAAAAA 60.094 33.333 0.00 0.00 0.00 1.94
320 321 7.926018 GTCAGGAAGGAATAACAACACAAAAAT 59.074 33.333 0.00 0.00 0.00 1.82
321 322 8.482128 TCAGGAAGGAATAACAACACAAAAATT 58.518 29.630 0.00 0.00 0.00 1.82
322 323 8.550376 CAGGAAGGAATAACAACACAAAAATTG 58.450 33.333 0.00 0.00 0.00 2.32
323 324 8.482128 AGGAAGGAATAACAACACAAAAATTGA 58.518 29.630 0.00 0.00 0.00 2.57
324 325 9.271828 GGAAGGAATAACAACACAAAAATTGAT 57.728 29.630 0.00 0.00 0.00 2.57
343 344 6.371595 TTGATAATTCAATTTTGGGGCTGT 57.628 33.333 0.00 0.00 36.94 4.40
344 345 6.371595 TGATAATTCAATTTTGGGGCTGTT 57.628 33.333 0.00 0.00 0.00 3.16
345 346 7.487822 TGATAATTCAATTTTGGGGCTGTTA 57.512 32.000 0.00 0.00 0.00 2.41
346 347 7.327214 TGATAATTCAATTTTGGGGCTGTTAC 58.673 34.615 0.00 0.00 0.00 2.50
347 348 5.559148 AATTCAATTTTGGGGCTGTTACA 57.441 34.783 0.00 0.00 0.00 2.41
365 366 5.126222 TGTTACATTTCTTGACCAAACTGCA 59.874 36.000 0.00 0.00 0.00 4.41
366 367 4.311816 ACATTTCTTGACCAAACTGCAG 57.688 40.909 13.48 13.48 0.00 4.41
392 393 6.848296 GCGCAGAACTTTATGAGATGAAATAC 59.152 38.462 0.30 0.00 0.00 1.89
470 471 4.994852 CGAATCTACTTTGGTTGGAGTTCA 59.005 41.667 0.00 0.00 0.00 3.18
560 565 3.057245 GTGGAATGCTTTTGTTCTCCTCC 60.057 47.826 0.00 0.00 0.00 4.30
617 622 6.730977 AGAAGGAATAGGGGAATATTCGATCA 59.269 38.462 9.32 0.00 41.24 2.92
632 637 4.685169 TCGATCATTCACTCCAAAAAGC 57.315 40.909 0.00 0.00 0.00 3.51
813 819 6.819284 ACTCAATTGACAAATTCCACAACAT 58.181 32.000 3.38 0.00 33.59 2.71
873 879 8.327941 TCTGATGAATCCACTTTCTTTTACAG 57.672 34.615 0.00 0.00 0.00 2.74
1041 1071 1.616159 TTGGTTTTCTACTGGCTGCC 58.384 50.000 12.87 12.87 0.00 4.85
1195 1225 8.961634 AGACTAATTAGGAATTCTTTTCTTGGC 58.038 33.333 16.73 0.00 32.38 4.52
1332 1363 5.121925 GGCCTAATTCCTATTACTTTAGCGC 59.878 44.000 0.00 0.00 0.00 5.92
1363 1394 6.903419 TCGTGAATGTGTATTTGCAATACAA 58.097 32.000 17.58 11.49 36.40 2.41
1369 1400 4.214332 TGTGTATTTGCAATACAAGCGTGA 59.786 37.500 17.58 0.00 40.06 4.35
1454 1489 6.993079 AGGTCAAATTGAAATTGGAGTTACC 58.007 36.000 0.00 0.00 39.54 2.85
1487 1522 8.940768 TTTGTTAAGTTATTTTGCTCTGCTTT 57.059 26.923 0.00 0.00 0.00 3.51
1552 1587 1.003233 GACATCGGGTTTTGGAGACCT 59.997 52.381 0.00 0.00 37.34 3.85
1571 1606 1.986378 CTGCGTTCTACCGAACTGAAG 59.014 52.381 4.02 0.00 45.78 3.02
1655 1690 7.274033 CGTACGTATAGTCTCCACAAATTCAAA 59.726 37.037 7.22 0.00 0.00 2.69
1701 1736 2.806818 TCTCGTCGCTACTGCCTATAAG 59.193 50.000 0.00 0.00 35.36 1.73
1728 1763 7.068686 AGAAAGAAGTAATAGGTAGGGATGC 57.931 40.000 0.00 0.00 0.00 3.91
1732 1767 4.214993 AGTAATAGGTAGGGATGCCAGT 57.785 45.455 5.86 0.00 0.00 4.00
1741 1776 4.385310 GGTAGGGATGCCAGTATTTGAACT 60.385 45.833 5.86 0.00 0.00 3.01
1743 1778 5.450818 AGGGATGCCAGTATTTGAACTTA 57.549 39.130 5.86 0.00 0.00 2.24
1744 1779 5.193679 AGGGATGCCAGTATTTGAACTTAC 58.806 41.667 5.86 0.00 0.00 2.34
1779 1814 3.428316 CCAAAACAAACACGCTACCAAGT 60.428 43.478 0.00 0.00 0.00 3.16
1802 1837 2.415491 GCGCTACATCCCTTTTCCAAAC 60.415 50.000 0.00 0.00 0.00 2.93
1803 1838 2.163613 CGCTACATCCCTTTTCCAAACC 59.836 50.000 0.00 0.00 0.00 3.27
1809 1844 5.620206 ACATCCCTTTTCCAAACCAAATTC 58.380 37.500 0.00 0.00 0.00 2.17
1857 1892 6.505044 TCATGTCTTCTTTTCCACATCATG 57.495 37.500 0.00 0.00 33.74 3.07
1873 1908 8.301720 TCCACATCATGATTTTCTTCTTCTTTG 58.698 33.333 5.16 0.00 0.00 2.77
1942 1977 7.257722 GTGTCATTTCTTCTTTTTGGTCTCAA 58.742 34.615 0.00 0.00 0.00 3.02
2045 2080 5.860648 AGGAAGAAGGGGTCATCTTTTTA 57.139 39.130 0.00 0.00 36.08 1.52
2094 2129 9.297586 TCGTCGATATGGTTCATTTTATATAGC 57.702 33.333 0.00 0.00 0.00 2.97
2095 2130 9.083080 CGTCGATATGGTTCATTTTATATAGCA 57.917 33.333 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.605951 AAATATTCCTAAGTCCCATGCAATATT 57.394 29.630 0.00 0.00 30.16 1.28
1 2 9.605951 AAAATATTCCTAAGTCCCATGCAATAT 57.394 29.630 0.00 0.00 0.00 1.28
2 3 9.432982 AAAAATATTCCTAAGTCCCATGCAATA 57.567 29.630 0.00 0.00 0.00 1.90
3 4 7.919385 AAAATATTCCTAAGTCCCATGCAAT 57.081 32.000 0.00 0.00 0.00 3.56
4 5 7.555087 CAAAAATATTCCTAAGTCCCATGCAA 58.445 34.615 0.00 0.00 0.00 4.08
5 6 6.406849 GCAAAAATATTCCTAAGTCCCATGCA 60.407 38.462 0.00 0.00 0.00 3.96
6 7 5.985530 GCAAAAATATTCCTAAGTCCCATGC 59.014 40.000 0.00 0.00 0.00 4.06
7 8 7.111247 TGCAAAAATATTCCTAAGTCCCATG 57.889 36.000 0.00 0.00 0.00 3.66
8 9 7.919385 ATGCAAAAATATTCCTAAGTCCCAT 57.081 32.000 0.00 0.00 0.00 4.00
9 10 9.077885 GATATGCAAAAATATTCCTAAGTCCCA 57.922 33.333 0.00 0.00 0.00 4.37
10 11 8.523658 GGATATGCAAAAATATTCCTAAGTCCC 58.476 37.037 0.00 0.00 0.00 4.46
11 12 9.077885 TGGATATGCAAAAATATTCCTAAGTCC 57.922 33.333 0.00 0.00 0.00 3.85
17 18 9.822185 GAAACTTGGATATGCAAAAATATTCCT 57.178 29.630 11.06 0.00 0.00 3.36
18 19 9.598517 TGAAACTTGGATATGCAAAAATATTCC 57.401 29.630 11.06 0.00 0.00 3.01
24 25 9.388506 TCTTTTTGAAACTTGGATATGCAAAAA 57.611 25.926 11.06 5.53 39.76 1.94
25 26 8.954950 TCTTTTTGAAACTTGGATATGCAAAA 57.045 26.923 11.06 0.00 33.52 2.44
27 28 9.859427 CTATCTTTTTGAAACTTGGATATGCAA 57.141 29.630 9.48 9.48 0.00 4.08
28 29 8.469200 CCTATCTTTTTGAAACTTGGATATGCA 58.531 33.333 0.00 0.00 0.00 3.96
29 30 8.686334 TCCTATCTTTTTGAAACTTGGATATGC 58.314 33.333 0.00 0.00 0.00 3.14
31 32 9.413734 CCTCCTATCTTTTTGAAACTTGGATAT 57.586 33.333 0.00 0.00 0.00 1.63
32 33 8.611257 TCCTCCTATCTTTTTGAAACTTGGATA 58.389 33.333 0.00 0.00 0.00 2.59
33 34 7.470192 TCCTCCTATCTTTTTGAAACTTGGAT 58.530 34.615 0.00 0.00 0.00 3.41
34 35 6.848069 TCCTCCTATCTTTTTGAAACTTGGA 58.152 36.000 0.00 0.00 0.00 3.53
35 36 7.613411 AGATCCTCCTATCTTTTTGAAACTTGG 59.387 37.037 0.00 0.00 32.09 3.61
36 37 8.572855 AGATCCTCCTATCTTTTTGAAACTTG 57.427 34.615 0.00 0.00 32.09 3.16
37 38 8.610369 AGAGATCCTCCTATCTTTTTGAAACTT 58.390 33.333 0.00 0.00 36.33 2.66
38 39 8.046107 CAGAGATCCTCCTATCTTTTTGAAACT 58.954 37.037 0.00 0.00 36.33 2.66
39 40 7.281999 CCAGAGATCCTCCTATCTTTTTGAAAC 59.718 40.741 0.00 0.00 36.33 2.78
40 41 7.341805 CCAGAGATCCTCCTATCTTTTTGAAA 58.658 38.462 0.00 0.00 36.33 2.69
41 42 6.126652 CCCAGAGATCCTCCTATCTTTTTGAA 60.127 42.308 0.00 0.00 36.33 2.69
42 43 5.367937 CCCAGAGATCCTCCTATCTTTTTGA 59.632 44.000 0.00 0.00 36.33 2.69
43 44 5.367937 TCCCAGAGATCCTCCTATCTTTTTG 59.632 44.000 0.00 0.00 36.33 2.44
44 45 5.542743 TCCCAGAGATCCTCCTATCTTTTT 58.457 41.667 0.00 0.00 36.33 1.94
45 46 5.163259 TCCCAGAGATCCTCCTATCTTTT 57.837 43.478 0.00 0.00 36.33 2.27
46 47 4.841813 TCCCAGAGATCCTCCTATCTTT 57.158 45.455 0.00 0.00 36.33 2.52
47 48 4.078336 TGTTCCCAGAGATCCTCCTATCTT 60.078 45.833 0.00 0.00 36.33 2.40
48 49 3.469006 TGTTCCCAGAGATCCTCCTATCT 59.531 47.826 0.00 0.00 38.95 1.98
49 50 3.850752 TGTTCCCAGAGATCCTCCTATC 58.149 50.000 0.00 0.00 0.00 2.08
50 51 4.286813 TTGTTCCCAGAGATCCTCCTAT 57.713 45.455 0.00 0.00 0.00 2.57
51 52 3.776731 TTGTTCCCAGAGATCCTCCTA 57.223 47.619 0.00 0.00 0.00 2.94
52 53 2.649742 TTGTTCCCAGAGATCCTCCT 57.350 50.000 0.00 0.00 0.00 3.69
53 54 3.549794 CAATTGTTCCCAGAGATCCTCC 58.450 50.000 0.00 0.00 0.00 4.30
54 55 3.549794 CCAATTGTTCCCAGAGATCCTC 58.450 50.000 4.43 0.00 0.00 3.71
55 56 2.243221 CCCAATTGTTCCCAGAGATCCT 59.757 50.000 4.43 0.00 0.00 3.24
56 57 2.242196 TCCCAATTGTTCCCAGAGATCC 59.758 50.000 4.43 0.00 0.00 3.36
57 58 3.549794 CTCCCAATTGTTCCCAGAGATC 58.450 50.000 4.43 0.00 0.00 2.75
58 59 2.243221 CCTCCCAATTGTTCCCAGAGAT 59.757 50.000 4.43 0.00 0.00 2.75
59 60 1.635487 CCTCCCAATTGTTCCCAGAGA 59.365 52.381 4.43 0.00 0.00 3.10
60 61 1.635487 TCCTCCCAATTGTTCCCAGAG 59.365 52.381 4.43 1.13 0.00 3.35
61 62 1.753903 TCCTCCCAATTGTTCCCAGA 58.246 50.000 4.43 0.00 0.00 3.86
62 63 2.025037 TGATCCTCCCAATTGTTCCCAG 60.025 50.000 4.43 0.00 0.00 4.45
63 64 1.999295 TGATCCTCCCAATTGTTCCCA 59.001 47.619 4.43 0.00 0.00 4.37
64 65 2.760650 GTTGATCCTCCCAATTGTTCCC 59.239 50.000 4.43 0.00 0.00 3.97
65 66 3.430453 TGTTGATCCTCCCAATTGTTCC 58.570 45.455 4.43 0.00 0.00 3.62
66 67 4.335416 TCTGTTGATCCTCCCAATTGTTC 58.665 43.478 4.43 0.00 0.00 3.18
67 68 4.387026 TCTGTTGATCCTCCCAATTGTT 57.613 40.909 4.43 0.00 0.00 2.83
68 69 4.018141 TGATCTGTTGATCCTCCCAATTGT 60.018 41.667 4.43 0.00 46.34 2.71
69 70 4.529897 TGATCTGTTGATCCTCCCAATTG 58.470 43.478 0.00 0.00 46.34 2.32
70 71 4.868172 TGATCTGTTGATCCTCCCAATT 57.132 40.909 0.00 0.00 46.34 2.32
71 72 4.868172 TTGATCTGTTGATCCTCCCAAT 57.132 40.909 0.00 0.00 46.34 3.16
72 73 4.289410 TCTTTGATCTGTTGATCCTCCCAA 59.711 41.667 0.00 0.00 46.34 4.12
73 74 3.845992 TCTTTGATCTGTTGATCCTCCCA 59.154 43.478 0.00 0.00 46.34 4.37
74 75 4.494091 TCTTTGATCTGTTGATCCTCCC 57.506 45.455 0.00 0.00 46.34 4.30
75 76 6.824305 TTTTCTTTGATCTGTTGATCCTCC 57.176 37.500 0.00 0.00 46.34 4.30
76 77 8.048534 TCATTTTCTTTGATCTGTTGATCCTC 57.951 34.615 0.00 0.00 46.34 3.71
77 78 8.467598 CATCATTTTCTTTGATCTGTTGATCCT 58.532 33.333 0.00 0.00 46.34 3.24
78 79 7.705325 CCATCATTTTCTTTGATCTGTTGATCC 59.295 37.037 0.00 0.00 46.34 3.36
79 80 7.222224 GCCATCATTTTCTTTGATCTGTTGATC 59.778 37.037 0.00 0.00 46.89 2.92
80 81 7.039882 GCCATCATTTTCTTTGATCTGTTGAT 58.960 34.615 0.00 0.00 31.50 2.57
81 82 6.209986 AGCCATCATTTTCTTTGATCTGTTGA 59.790 34.615 0.00 0.00 31.50 3.18
82 83 6.395629 AGCCATCATTTTCTTTGATCTGTTG 58.604 36.000 0.00 0.00 31.50 3.33
83 84 6.350780 GGAGCCATCATTTTCTTTGATCTGTT 60.351 38.462 0.00 0.00 31.50 3.16
84 85 5.126707 GGAGCCATCATTTTCTTTGATCTGT 59.873 40.000 0.00 0.00 31.50 3.41
85 86 5.360144 AGGAGCCATCATTTTCTTTGATCTG 59.640 40.000 0.00 0.00 31.50 2.90
86 87 5.516984 AGGAGCCATCATTTTCTTTGATCT 58.483 37.500 0.00 0.00 31.50 2.75
87 88 5.848833 AGGAGCCATCATTTTCTTTGATC 57.151 39.130 0.00 0.00 31.50 2.92
88 89 6.013984 ACAAAGGAGCCATCATTTTCTTTGAT 60.014 34.615 16.47 2.58 37.33 2.57
89 90 5.305128 ACAAAGGAGCCATCATTTTCTTTGA 59.695 36.000 16.47 0.00 37.33 2.69
90 91 5.544650 ACAAAGGAGCCATCATTTTCTTTG 58.455 37.500 0.00 0.00 37.33 2.77
91 92 5.813513 ACAAAGGAGCCATCATTTTCTTT 57.186 34.783 0.00 0.00 37.33 2.52
92 93 7.178983 TGAATACAAAGGAGCCATCATTTTCTT 59.821 33.333 0.00 0.00 37.33 2.52
93 94 6.664816 TGAATACAAAGGAGCCATCATTTTCT 59.335 34.615 0.00 0.00 37.33 2.52
94 95 6.753744 GTGAATACAAAGGAGCCATCATTTTC 59.246 38.462 0.00 0.00 37.33 2.29
95 96 6.211184 TGTGAATACAAAGGAGCCATCATTTT 59.789 34.615 0.00 0.00 37.33 1.82
96 97 5.716228 TGTGAATACAAAGGAGCCATCATTT 59.284 36.000 0.00 0.00 39.91 2.32
97 98 5.263599 TGTGAATACAAAGGAGCCATCATT 58.736 37.500 0.00 0.00 32.88 2.57
98 99 4.858850 TGTGAATACAAAGGAGCCATCAT 58.141 39.130 0.00 0.00 32.88 2.45
99 100 4.299586 TGTGAATACAAAGGAGCCATCA 57.700 40.909 0.00 0.00 32.88 3.07
110 111 5.954752 TGGAATATGCCCTTTGTGAATACAA 59.045 36.000 0.00 0.00 44.66 2.41
111 112 5.514169 TGGAATATGCCCTTTGTGAATACA 58.486 37.500 0.00 0.00 34.31 2.29
112 113 6.463995 TTGGAATATGCCCTTTGTGAATAC 57.536 37.500 0.00 0.00 0.00 1.89
113 114 7.201992 GGAATTGGAATATGCCCTTTGTGAATA 60.202 37.037 0.00 0.00 0.00 1.75
114 115 6.408434 GGAATTGGAATATGCCCTTTGTGAAT 60.408 38.462 0.00 0.00 0.00 2.57
115 116 5.104982 GGAATTGGAATATGCCCTTTGTGAA 60.105 40.000 0.00 0.00 0.00 3.18
116 117 4.405358 GGAATTGGAATATGCCCTTTGTGA 59.595 41.667 0.00 0.00 0.00 3.58
117 118 4.696455 GGAATTGGAATATGCCCTTTGTG 58.304 43.478 0.00 0.00 0.00 3.33
118 119 3.384467 CGGAATTGGAATATGCCCTTTGT 59.616 43.478 0.00 0.00 0.00 2.83
119 120 3.636300 TCGGAATTGGAATATGCCCTTTG 59.364 43.478 0.00 0.00 0.00 2.77
120 121 3.909732 TCGGAATTGGAATATGCCCTTT 58.090 40.909 0.00 0.00 0.00 3.11
121 122 3.593442 TCGGAATTGGAATATGCCCTT 57.407 42.857 0.00 0.00 0.00 3.95
122 123 3.593442 TTCGGAATTGGAATATGCCCT 57.407 42.857 0.00 0.00 0.00 5.19
123 124 4.664150 TTTTCGGAATTGGAATATGCCC 57.336 40.909 0.00 0.00 0.00 5.36
124 125 6.529463 CAATTTTCGGAATTGGAATATGCC 57.471 37.500 13.85 0.00 34.80 4.40
136 137 6.267928 TCAAACCCTAATTCCAATTTTCGGAA 59.732 34.615 0.00 0.00 46.30 4.30
137 138 5.775701 TCAAACCCTAATTCCAATTTTCGGA 59.224 36.000 0.00 0.00 0.00 4.55
138 139 6.031751 TCAAACCCTAATTCCAATTTTCGG 57.968 37.500 0.00 0.00 0.00 4.30
139 140 6.919721 TCTCAAACCCTAATTCCAATTTTCG 58.080 36.000 0.00 0.00 0.00 3.46
140 141 7.323420 CCTCTCAAACCCTAATTCCAATTTTC 58.677 38.462 0.00 0.00 0.00 2.29
141 142 6.213397 CCCTCTCAAACCCTAATTCCAATTTT 59.787 38.462 0.00 0.00 0.00 1.82
142 143 5.721480 CCCTCTCAAACCCTAATTCCAATTT 59.279 40.000 0.00 0.00 0.00 1.82
143 144 5.222547 ACCCTCTCAAACCCTAATTCCAATT 60.223 40.000 0.00 0.00 0.00 2.32
144 145 4.294970 ACCCTCTCAAACCCTAATTCCAAT 59.705 41.667 0.00 0.00 0.00 3.16
145 146 3.660669 ACCCTCTCAAACCCTAATTCCAA 59.339 43.478 0.00 0.00 0.00 3.53
146 147 3.265489 ACCCTCTCAAACCCTAATTCCA 58.735 45.455 0.00 0.00 0.00 3.53
147 148 4.317530 AACCCTCTCAAACCCTAATTCC 57.682 45.455 0.00 0.00 0.00 3.01
148 149 4.462834 CCAAACCCTCTCAAACCCTAATTC 59.537 45.833 0.00 0.00 0.00 2.17
149 150 4.416516 CCAAACCCTCTCAAACCCTAATT 58.583 43.478 0.00 0.00 0.00 1.40
150 151 3.245622 CCCAAACCCTCTCAAACCCTAAT 60.246 47.826 0.00 0.00 0.00 1.73
151 152 2.109304 CCCAAACCCTCTCAAACCCTAA 59.891 50.000 0.00 0.00 0.00 2.69
152 153 1.708551 CCCAAACCCTCTCAAACCCTA 59.291 52.381 0.00 0.00 0.00 3.53
153 154 0.482887 CCCAAACCCTCTCAAACCCT 59.517 55.000 0.00 0.00 0.00 4.34
154 155 0.481128 TCCCAAACCCTCTCAAACCC 59.519 55.000 0.00 0.00 0.00 4.11
155 156 2.171003 CATCCCAAACCCTCTCAAACC 58.829 52.381 0.00 0.00 0.00 3.27
156 157 3.154827 TCATCCCAAACCCTCTCAAAC 57.845 47.619 0.00 0.00 0.00 2.93
157 158 3.700538 CATCATCCCAAACCCTCTCAAA 58.299 45.455 0.00 0.00 0.00 2.69
158 159 2.621407 GCATCATCCCAAACCCTCTCAA 60.621 50.000 0.00 0.00 0.00 3.02
159 160 1.064463 GCATCATCCCAAACCCTCTCA 60.064 52.381 0.00 0.00 0.00 3.27
160 161 1.064463 TGCATCATCCCAAACCCTCTC 60.064 52.381 0.00 0.00 0.00 3.20
161 162 1.002069 TGCATCATCCCAAACCCTCT 58.998 50.000 0.00 0.00 0.00 3.69
162 163 1.851304 TTGCATCATCCCAAACCCTC 58.149 50.000 0.00 0.00 0.00 4.30
163 164 2.323999 TTTGCATCATCCCAAACCCT 57.676 45.000 0.00 0.00 0.00 4.34
164 165 4.443315 CCTTATTTGCATCATCCCAAACCC 60.443 45.833 0.00 0.00 34.18 4.11
165 166 4.162131 ACCTTATTTGCATCATCCCAAACC 59.838 41.667 0.00 0.00 34.18 3.27
166 167 5.127682 AGACCTTATTTGCATCATCCCAAAC 59.872 40.000 0.00 0.00 34.18 2.93
167 168 5.271598 AGACCTTATTTGCATCATCCCAAA 58.728 37.500 0.00 0.00 35.64 3.28
168 169 4.870636 AGACCTTATTTGCATCATCCCAA 58.129 39.130 0.00 0.00 0.00 4.12
169 170 4.524802 AGACCTTATTTGCATCATCCCA 57.475 40.909 0.00 0.00 0.00 4.37
170 171 4.500375 GCAAGACCTTATTTGCATCATCCC 60.500 45.833 4.48 0.00 46.72 3.85
171 172 4.614946 GCAAGACCTTATTTGCATCATCC 58.385 43.478 4.48 0.00 46.72 3.51
178 179 2.094545 CAGTGGGCAAGACCTTATTTGC 60.095 50.000 0.00 0.81 46.76 3.68
179 180 3.191371 GTCAGTGGGCAAGACCTTATTTG 59.809 47.826 0.00 0.00 39.10 2.32
180 181 3.181434 TGTCAGTGGGCAAGACCTTATTT 60.181 43.478 0.00 0.00 39.10 1.40
181 182 2.375174 TGTCAGTGGGCAAGACCTTATT 59.625 45.455 0.00 0.00 39.10 1.40
182 183 1.985159 TGTCAGTGGGCAAGACCTTAT 59.015 47.619 0.00 0.00 39.10 1.73
183 184 1.429930 TGTCAGTGGGCAAGACCTTA 58.570 50.000 0.00 0.00 39.10 2.69
184 185 0.550914 TTGTCAGTGGGCAAGACCTT 59.449 50.000 0.00 0.00 39.10 3.50
185 186 0.550914 TTTGTCAGTGGGCAAGACCT 59.449 50.000 0.00 0.00 39.10 3.85
186 187 0.954452 CTTTGTCAGTGGGCAAGACC 59.046 55.000 0.00 0.00 37.93 3.85
187 188 1.604278 GTCTTTGTCAGTGGGCAAGAC 59.396 52.381 11.21 11.21 0.00 3.01
188 189 1.211703 TGTCTTTGTCAGTGGGCAAGA 59.788 47.619 0.00 0.00 0.00 3.02
189 190 1.679139 TGTCTTTGTCAGTGGGCAAG 58.321 50.000 0.00 0.00 0.00 4.01
190 191 1.955778 CATGTCTTTGTCAGTGGGCAA 59.044 47.619 0.00 0.00 0.00 4.52
191 192 1.142667 TCATGTCTTTGTCAGTGGGCA 59.857 47.619 0.00 0.00 0.00 5.36
192 193 1.808945 CTCATGTCTTTGTCAGTGGGC 59.191 52.381 0.00 0.00 0.00 5.36
193 194 1.808945 GCTCATGTCTTTGTCAGTGGG 59.191 52.381 0.00 0.00 0.00 4.61
194 195 2.497138 TGCTCATGTCTTTGTCAGTGG 58.503 47.619 0.00 0.00 0.00 4.00
195 196 3.058432 CCTTGCTCATGTCTTTGTCAGTG 60.058 47.826 0.00 0.00 0.00 3.66
196 197 3.144506 CCTTGCTCATGTCTTTGTCAGT 58.855 45.455 0.00 0.00 0.00 3.41
197 198 3.144506 ACCTTGCTCATGTCTTTGTCAG 58.855 45.455 0.00 0.00 0.00 3.51
198 199 3.213206 ACCTTGCTCATGTCTTTGTCA 57.787 42.857 0.00 0.00 0.00 3.58
199 200 4.574599 AAACCTTGCTCATGTCTTTGTC 57.425 40.909 0.00 0.00 0.00 3.18
200 201 6.463995 TTAAAACCTTGCTCATGTCTTTGT 57.536 33.333 0.00 0.00 0.00 2.83
201 202 7.769272 TTTTAAAACCTTGCTCATGTCTTTG 57.231 32.000 0.00 0.00 0.00 2.77
202 203 7.495606 CCTTTTTAAAACCTTGCTCATGTCTTT 59.504 33.333 0.00 0.00 0.00 2.52
203 204 6.986231 CCTTTTTAAAACCTTGCTCATGTCTT 59.014 34.615 0.00 0.00 0.00 3.01
204 205 6.098266 ACCTTTTTAAAACCTTGCTCATGTCT 59.902 34.615 0.00 0.00 0.00 3.41
205 206 6.280643 ACCTTTTTAAAACCTTGCTCATGTC 58.719 36.000 0.00 0.00 0.00 3.06
206 207 6.233905 ACCTTTTTAAAACCTTGCTCATGT 57.766 33.333 0.00 0.00 0.00 3.21
207 208 6.760770 TCAACCTTTTTAAAACCTTGCTCATG 59.239 34.615 0.00 0.00 0.00 3.07
208 209 6.883744 TCAACCTTTTTAAAACCTTGCTCAT 58.116 32.000 0.00 0.00 0.00 2.90
209 210 6.287589 TCAACCTTTTTAAAACCTTGCTCA 57.712 33.333 0.00 0.00 0.00 4.26
210 211 7.603963 TTTCAACCTTTTTAAAACCTTGCTC 57.396 32.000 0.00 0.00 0.00 4.26
211 212 7.987750 TTTTCAACCTTTTTAAAACCTTGCT 57.012 28.000 0.00 0.00 0.00 3.91
212 213 8.454894 TCATTTTCAACCTTTTTAAAACCTTGC 58.545 29.630 0.00 0.00 0.00 4.01
213 214 9.767684 GTCATTTTCAACCTTTTTAAAACCTTG 57.232 29.630 0.00 3.11 0.00 3.61
214 215 9.508642 TGTCATTTTCAACCTTTTTAAAACCTT 57.491 25.926 0.00 0.00 0.00 3.50
215 216 9.508642 TTGTCATTTTCAACCTTTTTAAAACCT 57.491 25.926 0.00 0.00 0.00 3.50
216 217 9.767684 CTTGTCATTTTCAACCTTTTTAAAACC 57.232 29.630 0.00 0.00 0.00 3.27
223 224 9.750125 GACTATTCTTGTCATTTTCAACCTTTT 57.250 29.630 0.00 0.00 34.80 2.27
224 225 8.912988 TGACTATTCTTGTCATTTTCAACCTTT 58.087 29.630 0.00 0.00 39.23 3.11
225 226 8.463930 TGACTATTCTTGTCATTTTCAACCTT 57.536 30.769 0.00 0.00 39.23 3.50
236 237 7.660030 TGGATGACTATGACTATTCTTGTCA 57.340 36.000 0.00 0.00 46.58 3.58
237 238 7.981789 TGTTGGATGACTATGACTATTCTTGTC 59.018 37.037 0.00 0.00 35.21 3.18
238 239 7.851228 TGTTGGATGACTATGACTATTCTTGT 58.149 34.615 0.00 0.00 0.00 3.16
239 240 8.722480 TTGTTGGATGACTATGACTATTCTTG 57.278 34.615 0.00 0.00 0.00 3.02
240 241 9.167311 GTTTGTTGGATGACTATGACTATTCTT 57.833 33.333 0.00 0.00 0.00 2.52
241 242 8.543774 AGTTTGTTGGATGACTATGACTATTCT 58.456 33.333 0.00 0.00 0.00 2.40
242 243 8.723942 AGTTTGTTGGATGACTATGACTATTC 57.276 34.615 0.00 0.00 0.00 1.75
243 244 8.321353 TGAGTTTGTTGGATGACTATGACTATT 58.679 33.333 0.00 0.00 0.00 1.73
244 245 7.851228 TGAGTTTGTTGGATGACTATGACTAT 58.149 34.615 0.00 0.00 0.00 2.12
245 246 7.239763 TGAGTTTGTTGGATGACTATGACTA 57.760 36.000 0.00 0.00 0.00 2.59
246 247 6.114187 TGAGTTTGTTGGATGACTATGACT 57.886 37.500 0.00 0.00 0.00 3.41
247 248 5.352569 CCTGAGTTTGTTGGATGACTATGAC 59.647 44.000 0.00 0.00 0.00 3.06
248 249 5.248248 TCCTGAGTTTGTTGGATGACTATGA 59.752 40.000 0.00 0.00 0.00 2.15
249 250 5.491070 TCCTGAGTTTGTTGGATGACTATG 58.509 41.667 0.00 0.00 0.00 2.23
250 251 5.485353 TCTCCTGAGTTTGTTGGATGACTAT 59.515 40.000 0.00 0.00 0.00 2.12
251 252 4.838423 TCTCCTGAGTTTGTTGGATGACTA 59.162 41.667 0.00 0.00 0.00 2.59
252 253 3.648067 TCTCCTGAGTTTGTTGGATGACT 59.352 43.478 0.00 0.00 0.00 3.41
253 254 4.008074 TCTCCTGAGTTTGTTGGATGAC 57.992 45.455 0.00 0.00 0.00 3.06
254 255 4.705110 TTCTCCTGAGTTTGTTGGATGA 57.295 40.909 0.00 0.00 0.00 2.92
255 256 5.065914 TCTTTCTCCTGAGTTTGTTGGATG 58.934 41.667 0.00 0.00 0.00 3.51
256 257 5.310409 TCTTTCTCCTGAGTTTGTTGGAT 57.690 39.130 0.00 0.00 0.00 3.41
257 258 4.771114 TCTTTCTCCTGAGTTTGTTGGA 57.229 40.909 0.00 0.00 0.00 3.53
258 259 6.396829 AAATCTTTCTCCTGAGTTTGTTGG 57.603 37.500 0.00 0.00 0.00 3.77
259 260 7.483307 TCAAAATCTTTCTCCTGAGTTTGTTG 58.517 34.615 13.04 0.00 43.90 3.33
260 261 7.645058 TCAAAATCTTTCTCCTGAGTTTGTT 57.355 32.000 13.04 0.00 43.90 2.83
261 262 7.645058 TTCAAAATCTTTCTCCTGAGTTTGT 57.355 32.000 13.04 0.00 43.90 2.83
262 263 8.931385 TTTTCAAAATCTTTCTCCTGAGTTTG 57.069 30.769 8.85 8.85 44.45 2.93
264 265 9.538508 CATTTTTCAAAATCTTTCTCCTGAGTT 57.461 29.630 0.00 0.00 36.52 3.01
265 266 8.917088 TCATTTTTCAAAATCTTTCTCCTGAGT 58.083 29.630 0.00 0.00 36.52 3.41
266 267 9.408069 CTCATTTTTCAAAATCTTTCTCCTGAG 57.592 33.333 0.00 0.00 36.52 3.35
267 268 8.917088 ACTCATTTTTCAAAATCTTTCTCCTGA 58.083 29.630 0.00 0.00 36.52 3.86
268 269 8.975439 CACTCATTTTTCAAAATCTTTCTCCTG 58.025 33.333 0.00 0.00 36.52 3.86
269 270 8.699130 ACACTCATTTTTCAAAATCTTTCTCCT 58.301 29.630 0.00 0.00 36.52 3.69
270 271 8.877808 ACACTCATTTTTCAAAATCTTTCTCC 57.122 30.769 0.00 0.00 36.52 3.71
271 272 9.520204 TGACACTCATTTTTCAAAATCTTTCTC 57.480 29.630 0.00 0.00 36.52 2.87
272 273 9.525409 CTGACACTCATTTTTCAAAATCTTTCT 57.475 29.630 0.00 0.00 36.52 2.52
273 274 8.758715 CCTGACACTCATTTTTCAAAATCTTTC 58.241 33.333 0.00 0.00 36.52 2.62
274 275 8.477256 TCCTGACACTCATTTTTCAAAATCTTT 58.523 29.630 0.00 0.00 36.52 2.52
275 276 8.010733 TCCTGACACTCATTTTTCAAAATCTT 57.989 30.769 0.00 0.00 36.52 2.40
276 277 7.587037 TCCTGACACTCATTTTTCAAAATCT 57.413 32.000 0.00 0.00 36.52 2.40
277 278 7.383300 CCTTCCTGACACTCATTTTTCAAAATC 59.617 37.037 0.00 0.00 36.52 2.17
278 279 7.069826 TCCTTCCTGACACTCATTTTTCAAAAT 59.930 33.333 0.00 0.00 39.07 1.82
279 280 6.379703 TCCTTCCTGACACTCATTTTTCAAAA 59.620 34.615 0.00 0.00 0.00 2.44
280 281 5.890985 TCCTTCCTGACACTCATTTTTCAAA 59.109 36.000 0.00 0.00 0.00 2.69
281 282 5.445069 TCCTTCCTGACACTCATTTTTCAA 58.555 37.500 0.00 0.00 0.00 2.69
282 283 5.047566 TCCTTCCTGACACTCATTTTTCA 57.952 39.130 0.00 0.00 0.00 2.69
283 284 6.581171 ATTCCTTCCTGACACTCATTTTTC 57.419 37.500 0.00 0.00 0.00 2.29
284 285 7.505585 TGTTATTCCTTCCTGACACTCATTTTT 59.494 33.333 0.00 0.00 0.00 1.94
285 286 7.004086 TGTTATTCCTTCCTGACACTCATTTT 58.996 34.615 0.00 0.00 0.00 1.82
286 287 6.542821 TGTTATTCCTTCCTGACACTCATTT 58.457 36.000 0.00 0.00 0.00 2.32
287 288 6.126863 TGTTATTCCTTCCTGACACTCATT 57.873 37.500 0.00 0.00 0.00 2.57
288 289 5.762179 TGTTATTCCTTCCTGACACTCAT 57.238 39.130 0.00 0.00 0.00 2.90
289 290 5.163248 TGTTGTTATTCCTTCCTGACACTCA 60.163 40.000 0.00 0.00 0.00 3.41
290 291 5.179555 GTGTTGTTATTCCTTCCTGACACTC 59.820 44.000 0.00 0.00 33.87 3.51
291 292 5.063880 GTGTTGTTATTCCTTCCTGACACT 58.936 41.667 0.00 0.00 33.87 3.55
292 293 4.819630 TGTGTTGTTATTCCTTCCTGACAC 59.180 41.667 0.00 0.00 36.37 3.67
293 294 5.042463 TGTGTTGTTATTCCTTCCTGACA 57.958 39.130 0.00 0.00 0.00 3.58
294 295 6.385649 TTTGTGTTGTTATTCCTTCCTGAC 57.614 37.500 0.00 0.00 0.00 3.51
295 296 7.411486 TTTTTGTGTTGTTATTCCTTCCTGA 57.589 32.000 0.00 0.00 0.00 3.86
296 297 8.550376 CAATTTTTGTGTTGTTATTCCTTCCTG 58.450 33.333 0.00 0.00 0.00 3.86
297 298 8.482128 TCAATTTTTGTGTTGTTATTCCTTCCT 58.518 29.630 0.00 0.00 0.00 3.36
298 299 8.655651 TCAATTTTTGTGTTGTTATTCCTTCC 57.344 30.769 0.00 0.00 0.00 3.46
321 322 6.371595 AACAGCCCCAAAATTGAATTATCA 57.628 33.333 0.00 0.00 0.00 2.15
322 323 7.327214 TGTAACAGCCCCAAAATTGAATTATC 58.673 34.615 0.00 0.00 0.00 1.75
323 324 7.251321 TGTAACAGCCCCAAAATTGAATTAT 57.749 32.000 0.00 0.00 0.00 1.28
324 325 6.672266 TGTAACAGCCCCAAAATTGAATTA 57.328 33.333 0.00 0.00 0.00 1.40
325 326 5.559148 TGTAACAGCCCCAAAATTGAATT 57.441 34.783 0.00 0.00 0.00 2.17
326 327 5.760484 ATGTAACAGCCCCAAAATTGAAT 57.240 34.783 0.00 0.00 0.00 2.57
327 328 5.559148 AATGTAACAGCCCCAAAATTGAA 57.441 34.783 0.00 0.00 0.00 2.69
328 329 5.306678 AGAAATGTAACAGCCCCAAAATTGA 59.693 36.000 0.00 0.00 0.00 2.57
329 330 5.550290 AGAAATGTAACAGCCCCAAAATTG 58.450 37.500 0.00 0.00 0.00 2.32
330 331 5.823861 AGAAATGTAACAGCCCCAAAATT 57.176 34.783 0.00 0.00 0.00 1.82
331 332 5.306678 TCAAGAAATGTAACAGCCCCAAAAT 59.693 36.000 0.00 0.00 0.00 1.82
332 333 4.651503 TCAAGAAATGTAACAGCCCCAAAA 59.348 37.500 0.00 0.00 0.00 2.44
333 334 4.038642 GTCAAGAAATGTAACAGCCCCAAA 59.961 41.667 0.00 0.00 0.00 3.28
334 335 3.572255 GTCAAGAAATGTAACAGCCCCAA 59.428 43.478 0.00 0.00 0.00 4.12
335 336 3.153919 GTCAAGAAATGTAACAGCCCCA 58.846 45.455 0.00 0.00 0.00 4.96
336 337 2.492088 GGTCAAGAAATGTAACAGCCCC 59.508 50.000 0.00 0.00 0.00 5.80
337 338 3.153919 TGGTCAAGAAATGTAACAGCCC 58.846 45.455 0.00 0.00 0.00 5.19
338 339 4.846779 TTGGTCAAGAAATGTAACAGCC 57.153 40.909 0.00 0.00 0.00 4.85
339 340 5.687285 CAGTTTGGTCAAGAAATGTAACAGC 59.313 40.000 0.00 0.00 0.00 4.40
340 341 5.687285 GCAGTTTGGTCAAGAAATGTAACAG 59.313 40.000 0.00 0.00 0.00 3.16
341 342 5.126222 TGCAGTTTGGTCAAGAAATGTAACA 59.874 36.000 0.00 0.00 0.00 2.41
342 343 5.587289 TGCAGTTTGGTCAAGAAATGTAAC 58.413 37.500 0.00 0.00 0.00 2.50
343 344 5.221224 CCTGCAGTTTGGTCAAGAAATGTAA 60.221 40.000 13.81 0.00 0.00 2.41
344 345 4.278170 CCTGCAGTTTGGTCAAGAAATGTA 59.722 41.667 13.81 0.00 0.00 2.29
345 346 3.068590 CCTGCAGTTTGGTCAAGAAATGT 59.931 43.478 13.81 0.00 0.00 2.71
346 347 3.645884 CCTGCAGTTTGGTCAAGAAATG 58.354 45.455 13.81 0.00 0.00 2.32
347 348 2.036346 GCCTGCAGTTTGGTCAAGAAAT 59.964 45.455 13.81 0.00 0.00 2.17
365 366 3.118629 TCATCTCATAAAGTTCTGCGCCT 60.119 43.478 4.18 0.00 0.00 5.52
366 367 3.198068 TCATCTCATAAAGTTCTGCGCC 58.802 45.455 4.18 0.00 0.00 6.53
392 393 6.090483 TCTATTCTATCTTCTGCCTTTCCG 57.910 41.667 0.00 0.00 0.00 4.30
532 537 2.306847 ACAAAAGCATTCCACGACCTT 58.693 42.857 0.00 0.00 0.00 3.50
617 622 1.886542 GACCCGCTTTTTGGAGTGAAT 59.113 47.619 0.00 0.00 0.00 2.57
632 637 8.135529 GGATAATTTCTTTTTCAATAGGACCCG 58.864 37.037 0.00 0.00 0.00 5.28
813 819 6.782988 AGTCCCTAATTCCGAATCAAGAGATA 59.217 38.462 0.00 0.00 33.08 1.98
1195 1225 8.607441 TCTAAATTATCCACGAATCTCAATGG 57.393 34.615 0.00 0.00 0.00 3.16
1345 1376 5.094812 CACGCTTGTATTGCAAATACACAT 58.905 37.500 16.36 0.00 36.53 3.21
1348 1379 4.142708 CCTCACGCTTGTATTGCAAATACA 60.143 41.667 1.71 10.12 36.53 2.29
1363 1394 1.137872 GATCCAACTGATCCTCACGCT 59.862 52.381 0.00 0.00 43.53 5.07
1478 1513 6.147492 CCATCTATCTTATGTCAAAGCAGAGC 59.853 42.308 0.00 0.00 0.00 4.09
1487 1522 6.015095 AGCGTGATTCCATCTATCTTATGTCA 60.015 38.462 0.00 0.00 0.00 3.58
1571 1606 5.221891 TGAATGAATGAAAGCGCTCTTAC 57.778 39.130 12.06 3.07 31.02 2.34
1613 1648 7.918536 ATACGTACGTGAGATACATTAGGAT 57.081 36.000 30.25 7.90 0.00 3.24
1701 1736 7.672122 TCCCTACCTATTACTTCTTTCTTCC 57.328 40.000 0.00 0.00 0.00 3.46
1728 1763 8.073768 ACAAAATGTCGTAAGTTCAAATACTGG 58.926 33.333 0.00 0.00 39.48 4.00
1732 1767 8.505625 GGGTACAAAATGTCGTAAGTTCAAATA 58.494 33.333 0.00 0.00 39.48 1.40
1779 1814 1.271652 TGGAAAAGGGATGTAGCGCAA 60.272 47.619 11.47 0.00 0.00 4.85
1802 1837 6.411630 CAATGGCATTGTACAAGAATTTGG 57.588 37.500 27.93 1.43 35.78 3.28
1836 1871 7.713734 AATCATGATGTGGAAAAGAAGACAT 57.286 32.000 9.46 0.00 0.00 3.06
1915 1950 4.932146 ACCAAAAAGAAGAAATGACACGG 58.068 39.130 0.00 0.00 0.00 4.94
2052 2087 5.857471 TCGACGAATTTTTCCTATCCCTA 57.143 39.130 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.