Multiple sequence alignment - TraesCS1D01G168900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G168900
chr1D
100.000
4098
0
0
1
4098
241234756
241238853
0.000000e+00
7568
1
TraesCS1D01G168900
chr1B
93.329
3463
157
38
526
3961
332808714
332805299
0.000000e+00
5048
2
TraesCS1D01G168900
chr1B
87.992
533
44
9
1
526
332809267
332808748
2.710000e-171
612
3
TraesCS1D01G168900
chr1A
91.340
2321
104
37
265
2535
306117456
306119729
0.000000e+00
3083
4
TraesCS1D01G168900
chr1A
95.590
1338
45
7
2568
3893
306119729
306121064
0.000000e+00
2132
5
TraesCS1D01G168900
chr1A
85.448
268
24
6
5
266
306116831
306117089
8.730000e-67
265
6
TraesCS1D01G168900
chr1A
93.684
95
5
1
3216
3309
498694264
498694170
1.540000e-29
141
7
TraesCS1D01G168900
chrUn
93.684
95
5
1
3216
3309
380590999
380590905
1.540000e-29
141
8
TraesCS1D01G168900
chrUn
93.684
95
5
1
3216
3309
395675553
395675459
1.540000e-29
141
9
TraesCS1D01G168900
chrUn
93.684
95
5
1
3216
3309
453336062
453335968
1.540000e-29
141
10
TraesCS1D01G168900
chr7D
93.684
95
5
1
3216
3309
203496964
203497058
1.540000e-29
141
11
TraesCS1D01G168900
chr6D
93.684
95
5
1
3216
3309
124514489
124514583
1.540000e-29
141
12
TraesCS1D01G168900
chr4D
93.684
95
5
1
3216
3309
123332435
123332529
1.540000e-29
141
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G168900
chr1D
241234756
241238853
4097
False
7568.000000
7568
100.000000
1
4098
1
chr1D.!!$F1
4097
1
TraesCS1D01G168900
chr1B
332805299
332809267
3968
True
2830.000000
5048
90.660500
1
3961
2
chr1B.!!$R1
3960
2
TraesCS1D01G168900
chr1A
306116831
306121064
4233
False
1826.666667
3083
90.792667
5
3893
3
chr1A.!!$F1
3888
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
213
220
0.244178
GTCGACTCAGGGTTCCAGTC
59.756
60.000
8.7
0.0
34.36
3.51
F
249
256
1.344438
AGCTGACGTTCATGGTCTTCA
59.656
47.619
0.0
0.0
35.45
3.02
F
671
1091
1.359459
CCGTTTTGCCCGAGTCTAGC
61.359
60.000
0.0
0.0
0.00
3.42
F
1164
1613
1.604278
GCTTGGTTTCTGTTTCGCTCT
59.396
47.619
0.0
0.0
0.00
4.09
F
2554
3012
0.696501
ACGCCCAAACCTGATAACCT
59.303
50.000
0.0
0.0
0.00
3.50
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1338
1787
0.693049
GAGGAGGCCTGAAACCTGAA
59.307
55.000
12.0
0.0
37.77
3.02
R
1988
2446
1.889105
CGCCACAACAGCAGTCACT
60.889
57.895
0.0
0.0
0.00
3.41
R
2309
2767
1.674817
CGCCGTAAAGGAATGACACCT
60.675
52.381
0.0
0.0
45.00
4.00
R
2929
3399
0.038166
GCATCAGTTTCCCTGTCCCA
59.962
55.000
0.0
0.0
42.19
4.37
R
4016
4505
0.033109
GCAGGGAAGGTAAAGCCCAT
60.033
55.000
0.0
0.0
44.55
4.00
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
84
87
3.699038
TCTTTGAGTTTGGTTTGGGACAG
59.301
43.478
0.00
0.00
42.39
3.51
148
154
9.476202
TCTTTCATTATGTTGGTATGTCTATCG
57.524
33.333
0.00
0.00
0.00
2.92
150
156
9.996554
TTTCATTATGTTGGTATGTCTATCGAT
57.003
29.630
2.16
2.16
0.00
3.59
213
220
0.244178
GTCGACTCAGGGTTCCAGTC
59.756
60.000
8.70
0.00
34.36
3.51
240
247
3.385193
TCTTGATTCAGCTGACGTTCA
57.615
42.857
18.03
16.53
0.00
3.18
249
256
1.344438
AGCTGACGTTCATGGTCTTCA
59.656
47.619
0.00
0.00
35.45
3.02
266
640
5.649831
GGTCTTCAGAGTTTTTGCATATCCT
59.350
40.000
0.00
0.00
0.00
3.24
272
646
8.027524
TCAGAGTTTTTGCATATCCTCTATCT
57.972
34.615
6.26
0.00
0.00
1.98
279
653
8.579850
TTTTGCATATCCTCTATCTGTGTTTT
57.420
30.769
0.00
0.00
0.00
2.43
326
700
4.680708
CGTTGGTGTCTCCTAGTATGCATT
60.681
45.833
3.54
0.00
37.07
3.56
399
773
3.349879
AAAAATTTCCCGCCCGAGA
57.650
47.368
0.00
0.00
0.00
4.04
400
774
1.847328
AAAAATTTCCCGCCCGAGAT
58.153
45.000
0.00
0.00
0.00
2.75
450
824
1.548719
CATACCTCCGCCGATGGATAA
59.451
52.381
2.58
0.00
37.41
1.75
480
855
3.193479
AGAAGATTTCGGCACCCAAAATC
59.807
43.478
11.55
11.55
38.89
2.17
483
858
2.517650
TTTCGGCACCCAAAATCAAC
57.482
45.000
0.00
0.00
0.00
3.18
506
881
8.576442
CAACTGTAATTTTATCTTTCTGGGTGT
58.424
33.333
0.00
0.00
0.00
4.16
545
955
8.201242
TCATGTGACACTTAATATATGGCCTA
57.799
34.615
3.32
0.00
0.00
3.93
671
1091
1.359459
CCGTTTTGCCCGAGTCTAGC
61.359
60.000
0.00
0.00
0.00
3.42
769
1194
3.423154
CACCAACGGAGCTTCGCC
61.423
66.667
16.11
0.00
0.00
5.54
958
1406
4.927782
TTGCCGCCTGTTCGTGCT
62.928
61.111
0.00
0.00
0.00
4.40
1139
1588
4.041321
TGCTGCTGCTGATCCTATCTTATT
59.959
41.667
17.00
0.00
40.48
1.40
1145
1594
5.065914
TGCTGATCCTATCTTATTTGGTGC
58.934
41.667
0.00
0.00
0.00
5.01
1164
1613
1.604278
GCTTGGTTTCTGTTTCGCTCT
59.396
47.619
0.00
0.00
0.00
4.09
1338
1787
1.961180
CTGAGGATTCGTCGGGGCTT
61.961
60.000
7.21
0.00
0.00
4.35
1477
1926
7.758076
CGAAATATGGAAGTTATGGAGCGTATA
59.242
37.037
0.00
0.00
0.00
1.47
1596
2047
6.789457
TCATTTCAGTATGGACCAGAGGATAT
59.211
38.462
0.00
0.00
36.16
1.63
1721
2177
9.672673
TTTAGATTAATTTCAGAGGGAGAACAG
57.327
33.333
0.00
0.00
0.00
3.16
1853
2309
6.209192
TCCACATATTCTGCAAACAATCTGTT
59.791
34.615
0.00
0.00
43.41
3.16
1961
2419
1.612462
CCAGATCTGCAAGTGGCTTCA
60.612
52.381
17.76
0.00
45.15
3.02
1985
2443
4.171841
AGGATCAGAGGGGTCTTCTTCTAT
59.828
45.833
0.00
0.00
0.00
1.98
1988
2446
2.768527
CAGAGGGGTCTTCTTCTATGCA
59.231
50.000
0.00
0.00
0.00
3.96
2185
2643
2.171448
CCAATAGTAGCCCTGCTGTCTT
59.829
50.000
0.00
0.00
40.10
3.01
2309
2767
4.853468
TGGTTGGGCAATGTATCTCTTA
57.147
40.909
0.00
0.00
0.00
2.10
2393
2851
4.507512
CCCTTCCTTTTTCAGTAGGCTCTT
60.508
45.833
0.00
0.00
0.00
2.85
2551
3009
2.294074
GCATACGCCCAAACCTGATAA
58.706
47.619
0.00
0.00
0.00
1.75
2554
3012
0.696501
ACGCCCAAACCTGATAACCT
59.303
50.000
0.00
0.00
0.00
3.50
2556
3014
2.508300
ACGCCCAAACCTGATAACCTAT
59.492
45.455
0.00
0.00
0.00
2.57
2557
3015
3.053917
ACGCCCAAACCTGATAACCTATT
60.054
43.478
0.00
0.00
0.00
1.73
2558
3016
3.951680
CGCCCAAACCTGATAACCTATTT
59.048
43.478
0.00
0.00
0.00
1.40
2559
3017
4.401202
CGCCCAAACCTGATAACCTATTTT
59.599
41.667
0.00
0.00
0.00
1.82
2560
3018
5.660460
GCCCAAACCTGATAACCTATTTTG
58.340
41.667
0.00
0.00
0.00
2.44
2564
3022
8.808092
CCCAAACCTGATAACCTATTTTGTTTA
58.192
33.333
0.00
0.00
0.00
2.01
2709
3169
3.429547
CGGTGTGTGGATTTGGTGAAAAA
60.430
43.478
0.00
0.00
0.00
1.94
2796
3256
2.301009
AGGTTAGGTTCCGTCGAATGTT
59.699
45.455
0.00
0.00
0.00
2.71
2835
3305
6.750963
GTGTACTACGCTATTAGCTTTCAGTT
59.249
38.462
13.55
0.00
39.60
3.16
2836
3306
6.971184
TGTACTACGCTATTAGCTTTCAGTTC
59.029
38.462
13.55
8.89
39.60
3.01
2837
3307
5.349809
ACTACGCTATTAGCTTTCAGTTCC
58.650
41.667
13.55
0.00
39.60
3.62
2838
3308
3.187700
ACGCTATTAGCTTTCAGTTCCG
58.812
45.455
13.55
0.00
39.60
4.30
2839
3309
3.187700
CGCTATTAGCTTTCAGTTCCGT
58.812
45.455
13.55
0.00
39.60
4.69
2840
3310
3.000322
CGCTATTAGCTTTCAGTTCCGTG
60.000
47.826
13.55
0.00
39.60
4.94
2841
3311
4.181578
GCTATTAGCTTTCAGTTCCGTGA
58.818
43.478
8.47
0.00
38.45
4.35
2842
3312
4.630069
GCTATTAGCTTTCAGTTCCGTGAA
59.370
41.667
8.47
0.00
38.45
3.18
2843
3313
5.220491
GCTATTAGCTTTCAGTTCCGTGAAG
60.220
44.000
8.47
0.00
37.72
3.02
2844
3314
2.622064
AGCTTTCAGTTCCGTGAAGT
57.378
45.000
0.00
0.00
37.72
3.01
2929
3399
6.449956
TCCTGTCATACCTATTACCCTTCTT
58.550
40.000
0.00
0.00
0.00
2.52
3097
3567
4.142609
ACATGGTTATGGAGTGCACTAG
57.857
45.455
21.73
2.47
38.66
2.57
3110
3580
0.321653
GCACTAGTGGAAGTGGGTGG
60.322
60.000
23.95
0.00
45.75
4.61
3337
3816
1.872952
GCATAATGGTATGACTGCGCA
59.127
47.619
10.98
10.98
39.72
6.09
3493
3972
5.835113
ATAACACAGATGTATTTGGTGGC
57.165
39.130
0.00
0.00
38.45
5.01
3564
4043
2.370519
TCTACCCTTGTTTGTGCAGCTA
59.629
45.455
0.00
0.00
0.00
3.32
3717
4198
9.979578
ATCTTTCACAAATTGTAGTTTGCATTA
57.020
25.926
0.00
0.00
41.61
1.90
3779
4261
8.680903
GTTATGTGTCAAAGAATTCATCTGGAT
58.319
33.333
8.44
0.00
38.79
3.41
3860
4343
6.653320
TGAGAAGATAATAAAGTTGGCACGTT
59.347
34.615
0.00
0.00
0.00
3.99
3880
4363
4.037446
CGTTGATTTCCTTTTGGGACTTGA
59.963
41.667
0.00
0.00
45.03
3.02
3893
4376
4.526970
TGGGACTTGATAAAGATGCCTTC
58.473
43.478
0.00
0.00
0.00
3.46
3915
4403
2.117423
CCCCCGGCCTTTTCAAGT
59.883
61.111
0.00
0.00
0.00
3.16
3916
4404
2.275380
CCCCCGGCCTTTTCAAGTG
61.275
63.158
0.00
0.00
0.00
3.16
3917
4405
2.650778
CCCGGCCTTTTCAAGTGC
59.349
61.111
0.00
0.00
0.00
4.40
3920
4408
1.173043
CCGGCCTTTTCAAGTGCATA
58.827
50.000
0.00
0.00
0.00
3.14
3921
4409
1.750778
CCGGCCTTTTCAAGTGCATAT
59.249
47.619
0.00
0.00
0.00
1.78
3922
4410
2.223572
CCGGCCTTTTCAAGTGCATATC
60.224
50.000
0.00
0.00
0.00
1.63
3936
4425
3.486108
GTGCATATCAGTAACCGAGTTCG
59.514
47.826
0.00
0.00
39.44
3.95
3961
4450
2.087009
CGCCGAGACGTTCTTGTCC
61.087
63.158
0.00
0.00
39.77
4.02
3962
4451
1.289380
GCCGAGACGTTCTTGTCCT
59.711
57.895
0.00
0.00
39.77
3.85
3963
4452
1.009389
GCCGAGACGTTCTTGTCCTG
61.009
60.000
0.00
0.00
39.77
3.86
3964
4453
0.596577
CCGAGACGTTCTTGTCCTGA
59.403
55.000
0.00
0.00
39.77
3.86
3965
4454
1.666311
CCGAGACGTTCTTGTCCTGAC
60.666
57.143
0.00
0.00
39.77
3.51
3966
4455
1.267261
CGAGACGTTCTTGTCCTGACT
59.733
52.381
0.00
0.00
39.77
3.41
3967
4456
2.666069
CGAGACGTTCTTGTCCTGACTC
60.666
54.545
0.00
0.00
39.77
3.36
3968
4457
1.267261
AGACGTTCTTGTCCTGACTCG
59.733
52.381
0.00
0.00
39.77
4.18
3969
4458
0.314302
ACGTTCTTGTCCTGACTCGG
59.686
55.000
0.00
0.00
0.00
4.63
3970
4459
0.596577
CGTTCTTGTCCTGACTCGGA
59.403
55.000
0.00
0.00
0.00
4.55
3971
4460
1.000607
CGTTCTTGTCCTGACTCGGAA
60.001
52.381
0.00
0.00
34.20
4.30
3972
4461
2.545113
CGTTCTTGTCCTGACTCGGAAA
60.545
50.000
0.00
0.00
34.20
3.13
3973
4462
2.801111
GTTCTTGTCCTGACTCGGAAAC
59.199
50.000
0.00
0.00
34.20
2.78
3974
4463
2.317040
TCTTGTCCTGACTCGGAAACT
58.683
47.619
0.00
0.00
34.20
2.66
3975
4464
2.698797
TCTTGTCCTGACTCGGAAACTT
59.301
45.455
0.00
0.00
34.20
2.66
3976
4465
2.814280
TGTCCTGACTCGGAAACTTC
57.186
50.000
0.00
0.00
34.20
3.01
3977
4466
1.343465
TGTCCTGACTCGGAAACTTCC
59.657
52.381
0.00
0.00
44.05
3.46
3978
4467
0.974383
TCCTGACTCGGAAACTTCCC
59.026
55.000
2.86
0.00
44.67
3.97
3979
4468
0.389948
CCTGACTCGGAAACTTCCCG
60.390
60.000
2.86
0.00
44.67
5.14
3980
4469
0.317479
CTGACTCGGAAACTTCCCGT
59.683
55.000
2.86
0.91
46.53
5.28
3981
4470
1.542915
CTGACTCGGAAACTTCCCGTA
59.457
52.381
2.86
0.00
46.53
4.02
3982
4471
1.270550
TGACTCGGAAACTTCCCGTAC
59.729
52.381
2.86
0.00
46.53
3.67
3983
4472
0.242017
ACTCGGAAACTTCCCGTACG
59.758
55.000
8.69
8.69
46.53
3.67
3984
4473
0.523072
CTCGGAAACTTCCCGTACGA
59.477
55.000
18.76
0.00
46.53
3.43
3985
4474
0.240945
TCGGAAACTTCCCGTACGAC
59.759
55.000
18.76
0.00
46.53
4.34
3986
4475
1.067199
CGGAAACTTCCCGTACGACG
61.067
60.000
18.76
6.40
44.67
5.12
3987
4476
1.347097
GGAAACTTCCCGTACGACGC
61.347
60.000
18.76
0.00
40.91
5.19
3988
4477
0.387750
GAAACTTCCCGTACGACGCT
60.388
55.000
18.76
0.00
40.91
5.07
3989
4478
0.881118
AAACTTCCCGTACGACGCTA
59.119
50.000
18.76
0.00
40.91
4.26
3990
4479
0.449388
AACTTCCCGTACGACGCTAG
59.551
55.000
18.76
8.82
40.91
3.42
3991
4480
1.354506
CTTCCCGTACGACGCTAGG
59.645
63.158
18.76
8.32
40.91
3.02
3992
4481
2.056481
CTTCCCGTACGACGCTAGGG
62.056
65.000
18.76
13.90
40.91
3.53
3993
4482
2.819984
TTCCCGTACGACGCTAGGGT
62.820
60.000
18.76
12.95
40.91
4.34
3994
4483
2.711924
CCGTACGACGCTAGGGTC
59.288
66.667
25.78
25.78
40.91
4.46
3995
4484
1.817099
CCGTACGACGCTAGGGTCT
60.817
63.158
30.31
21.41
40.91
3.85
3996
4485
1.372087
CCGTACGACGCTAGGGTCTT
61.372
60.000
30.31
25.44
40.91
3.01
3997
4486
0.247974
CGTACGACGCTAGGGTCTTG
60.248
60.000
30.31
20.94
33.65
3.02
3998
4487
0.525029
GTACGACGCTAGGGTCTTGC
60.525
60.000
30.31
23.29
34.75
4.01
3999
4488
1.660560
TACGACGCTAGGGTCTTGCC
61.661
60.000
30.31
11.06
34.75
4.52
4000
4489
2.711922
CGACGCTAGGGTCTTGCCT
61.712
63.158
30.31
1.13
37.43
4.75
4001
4490
1.142097
GACGCTAGGGTCTTGCCTC
59.858
63.158
27.65
4.91
37.43
4.70
4002
4491
2.299503
GACGCTAGGGTCTTGCCTCC
62.300
65.000
27.65
4.22
37.43
4.30
4003
4492
2.060980
CGCTAGGGTCTTGCCTCCT
61.061
63.158
0.00
0.00
37.43
3.69
4004
4493
1.826709
GCTAGGGTCTTGCCTCCTC
59.173
63.158
0.00
0.00
37.43
3.71
4005
4494
0.978146
GCTAGGGTCTTGCCTCCTCA
60.978
60.000
0.00
0.00
37.43
3.86
4006
4495
1.799933
CTAGGGTCTTGCCTCCTCAT
58.200
55.000
0.00
0.00
37.43
2.90
4007
4496
1.415659
CTAGGGTCTTGCCTCCTCATG
59.584
57.143
0.00
0.00
37.43
3.07
4008
4497
0.548682
AGGGTCTTGCCTCCTCATGT
60.549
55.000
0.00
0.00
37.43
3.21
4009
4498
0.329596
GGGTCTTGCCTCCTCATGTT
59.670
55.000
0.00
0.00
37.43
2.71
4010
4499
1.559682
GGGTCTTGCCTCCTCATGTTA
59.440
52.381
0.00
0.00
37.43
2.41
4011
4500
2.026262
GGGTCTTGCCTCCTCATGTTAA
60.026
50.000
0.00
0.00
37.43
2.01
4012
4501
3.010420
GGTCTTGCCTCCTCATGTTAAC
58.990
50.000
0.00
0.00
0.00
2.01
4013
4502
2.673368
GTCTTGCCTCCTCATGTTAACG
59.327
50.000
0.26
0.00
0.00
3.18
4014
4503
2.009774
CTTGCCTCCTCATGTTAACGG
58.990
52.381
0.26
0.00
0.00
4.44
4015
4504
1.271856
TGCCTCCTCATGTTAACGGA
58.728
50.000
0.26
0.56
0.00
4.69
4016
4505
1.626321
TGCCTCCTCATGTTAACGGAA
59.374
47.619
0.26
0.00
0.00
4.30
4017
4506
2.238646
TGCCTCCTCATGTTAACGGAAT
59.761
45.455
0.26
0.00
0.00
3.01
4018
4507
2.614057
GCCTCCTCATGTTAACGGAATG
59.386
50.000
0.26
0.00
0.00
2.67
4019
4508
3.206150
CCTCCTCATGTTAACGGAATGG
58.794
50.000
0.26
0.85
0.00
3.16
4020
4509
3.206150
CTCCTCATGTTAACGGAATGGG
58.794
50.000
0.26
0.00
0.00
4.00
4021
4510
1.676006
CCTCATGTTAACGGAATGGGC
59.324
52.381
0.26
0.00
0.00
5.36
4022
4511
2.643551
CTCATGTTAACGGAATGGGCT
58.356
47.619
0.26
0.00
0.00
5.19
4023
4512
3.016736
CTCATGTTAACGGAATGGGCTT
58.983
45.455
0.26
0.00
0.00
4.35
4024
4513
3.426615
TCATGTTAACGGAATGGGCTTT
58.573
40.909
0.26
0.00
0.00
3.51
4025
4514
4.590918
TCATGTTAACGGAATGGGCTTTA
58.409
39.130
0.26
0.00
0.00
1.85
4026
4515
4.396790
TCATGTTAACGGAATGGGCTTTAC
59.603
41.667
0.26
0.00
0.00
2.01
4027
4516
3.083293
TGTTAACGGAATGGGCTTTACC
58.917
45.455
0.26
0.00
37.93
2.85
4028
4517
3.244981
TGTTAACGGAATGGGCTTTACCT
60.245
43.478
0.26
0.00
39.10
3.08
4029
4518
2.597578
AACGGAATGGGCTTTACCTT
57.402
45.000
0.00
0.00
39.10
3.50
4030
4519
2.124277
ACGGAATGGGCTTTACCTTC
57.876
50.000
0.00
0.00
39.10
3.46
4031
4520
1.340697
ACGGAATGGGCTTTACCTTCC
60.341
52.381
0.00
0.00
39.10
3.46
4032
4521
1.776662
GGAATGGGCTTTACCTTCCC
58.223
55.000
0.00
0.00
40.47
3.97
4033
4522
1.288037
GGAATGGGCTTTACCTTCCCT
59.712
52.381
0.00
0.00
40.69
4.20
4034
4523
2.379005
GAATGGGCTTTACCTTCCCTG
58.621
52.381
0.00
0.00
40.69
4.45
4035
4524
0.033109
ATGGGCTTTACCTTCCCTGC
60.033
55.000
0.00
0.00
40.69
4.85
4036
4525
1.379977
GGGCTTTACCTTCCCTGCC
60.380
63.158
0.00
0.00
39.10
4.85
4037
4526
1.749258
GGCTTTACCTTCCCTGCCG
60.749
63.158
0.00
0.00
34.51
5.69
4038
4527
1.002502
GCTTTACCTTCCCTGCCGT
60.003
57.895
0.00
0.00
0.00
5.68
4039
4528
0.608308
GCTTTACCTTCCCTGCCGTT
60.608
55.000
0.00
0.00
0.00
4.44
4040
4529
1.165270
CTTTACCTTCCCTGCCGTTG
58.835
55.000
0.00
0.00
0.00
4.10
4041
4530
0.891904
TTTACCTTCCCTGCCGTTGC
60.892
55.000
0.00
0.00
38.26
4.17
4042
4531
1.774894
TTACCTTCCCTGCCGTTGCT
61.775
55.000
0.00
0.00
38.71
3.91
4043
4532
2.463589
TACCTTCCCTGCCGTTGCTG
62.464
60.000
0.00
0.00
38.71
4.41
4044
4533
3.741476
CTTCCCTGCCGTTGCTGC
61.741
66.667
0.00
0.00
38.71
5.25
4045
4534
4.269523
TTCCCTGCCGTTGCTGCT
62.270
61.111
0.00
0.00
38.71
4.24
4053
4542
3.964875
CGTTGCTGCTGCCCGTTT
61.965
61.111
13.47
0.00
38.71
3.60
4054
4543
2.417097
GTTGCTGCTGCCCGTTTT
59.583
55.556
13.47
0.00
38.71
2.43
4055
4544
1.227234
GTTGCTGCTGCCCGTTTTT
60.227
52.632
13.47
0.00
38.71
1.94
4081
4570
9.541143
TTTTTCTTTTGTTCTTTTTCACTCAGT
57.459
25.926
0.00
0.00
0.00
3.41
4082
4571
9.541143
TTTTCTTTTGTTCTTTTTCACTCAGTT
57.459
25.926
0.00
0.00
0.00
3.16
4083
4572
9.541143
TTTCTTTTGTTCTTTTTCACTCAGTTT
57.459
25.926
0.00
0.00
0.00
2.66
4084
4573
9.541143
TTCTTTTGTTCTTTTTCACTCAGTTTT
57.459
25.926
0.00
0.00
0.00
2.43
4085
4574
9.191995
TCTTTTGTTCTTTTTCACTCAGTTTTC
57.808
29.630
0.00
0.00
0.00
2.29
4086
4575
9.196552
CTTTTGTTCTTTTTCACTCAGTTTTCT
57.803
29.630
0.00
0.00
0.00
2.52
4087
4576
9.541143
TTTTGTTCTTTTTCACTCAGTTTTCTT
57.459
25.926
0.00
0.00
0.00
2.52
4088
4577
9.541143
TTTGTTCTTTTTCACTCAGTTTTCTTT
57.459
25.926
0.00
0.00
0.00
2.52
4089
4578
8.519492
TGTTCTTTTTCACTCAGTTTTCTTTG
57.481
30.769
0.00
0.00
0.00
2.77
4090
4579
8.141268
TGTTCTTTTTCACTCAGTTTTCTTTGT
58.859
29.630
0.00
0.00
0.00
2.83
4091
4580
8.639428
GTTCTTTTTCACTCAGTTTTCTTTGTC
58.361
33.333
0.00
0.00
0.00
3.18
4092
4581
8.110860
TCTTTTTCACTCAGTTTTCTTTGTCT
57.889
30.769
0.00
0.00
0.00
3.41
4093
4582
8.023128
TCTTTTTCACTCAGTTTTCTTTGTCTG
58.977
33.333
0.00
0.00
0.00
3.51
4094
4583
7.447374
TTTTCACTCAGTTTTCTTTGTCTGA
57.553
32.000
0.00
0.00
35.92
3.27
4095
4584
7.630242
TTTCACTCAGTTTTCTTTGTCTGAT
57.370
32.000
0.00
0.00
36.55
2.90
4096
4585
7.630242
TTCACTCAGTTTTCTTTGTCTGATT
57.370
32.000
0.00
0.00
36.55
2.57
4097
4586
7.630242
TCACTCAGTTTTCTTTGTCTGATTT
57.370
32.000
0.00
0.00
36.55
2.17
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
10
11
4.140536
TGTATCATTGCACAACAGGTTCA
58.859
39.130
0.00
0.00
0.00
3.18
148
154
1.067915
GCTCCAGACATCCTCGCTATC
60.068
57.143
0.00
0.00
0.00
2.08
150
156
1.109920
GGCTCCAGACATCCTCGCTA
61.110
60.000
0.00
0.00
0.00
4.26
151
157
2.430610
GGCTCCAGACATCCTCGCT
61.431
63.158
0.00
0.00
0.00
4.93
152
158
2.107953
GGCTCCAGACATCCTCGC
59.892
66.667
0.00
0.00
0.00
5.03
155
161
3.023949
GCACGGCTCCAGACATCCT
62.024
63.158
0.00
0.00
0.00
3.24
156
162
2.512515
GCACGGCTCCAGACATCC
60.513
66.667
0.00
0.00
0.00
3.51
213
220
3.555139
GTCAGCTGAATCAAGAAGGATCG
59.445
47.826
20.19
0.00
0.00
3.69
240
247
6.096001
GGATATGCAAAAACTCTGAAGACCAT
59.904
38.462
0.00
0.00
0.00
3.55
249
256
7.714377
CACAGATAGAGGATATGCAAAAACTCT
59.286
37.037
15.54
15.54
38.67
3.24
266
640
4.688879
ACGCAAATCGAAAACACAGATAGA
59.311
37.500
0.00
0.00
41.67
1.98
272
646
1.849219
GCAACGCAAATCGAAAACACA
59.151
42.857
0.00
0.00
41.67
3.72
279
653
0.110867
CGAACTGCAACGCAAATCGA
60.111
50.000
14.37
0.00
44.03
3.59
302
676
2.426024
GCATACTAGGAGACACCAACGA
59.574
50.000
0.00
0.00
42.04
3.85
326
700
9.677567
GTAGAAGCAACAAATAAAAAGTCATCA
57.322
29.630
0.00
0.00
0.00
3.07
381
755
1.476488
CATCTCGGGCGGGAAATTTTT
59.524
47.619
0.00
0.00
0.00
1.94
382
756
1.102978
CATCTCGGGCGGGAAATTTT
58.897
50.000
0.00
0.00
0.00
1.82
383
757
0.751643
CCATCTCGGGCGGGAAATTT
60.752
55.000
0.00
0.00
0.00
1.82
384
758
1.152963
CCATCTCGGGCGGGAAATT
60.153
57.895
0.00
0.00
0.00
1.82
385
759
2.044806
CTCCATCTCGGGCGGGAAAT
62.045
60.000
0.00
0.00
34.36
2.17
387
761
3.154473
CTCCATCTCGGGCGGGAA
61.154
66.667
0.00
0.00
34.36
3.97
392
766
4.247380
CTGGCCTCCATCTCGGGC
62.247
72.222
3.32
0.00
45.34
6.13
393
767
2.444706
TCTGGCCTCCATCTCGGG
60.445
66.667
3.32
0.00
30.82
5.14
394
768
2.506061
CCTCTGGCCTCCATCTCGG
61.506
68.421
3.32
0.00
30.82
4.63
395
769
3.136750
CCTCTGGCCTCCATCTCG
58.863
66.667
3.32
0.00
30.82
4.04
396
770
2.828145
GCCTCTGGCCTCCATCTC
59.172
66.667
3.32
0.00
44.06
2.75
450
824
3.691609
GTGCCGAAATCTTCTTCCTCATT
59.308
43.478
0.00
0.00
0.00
2.57
480
855
8.576442
ACACCCAGAAAGATAAAATTACAGTTG
58.424
33.333
0.00
0.00
0.00
3.16
483
858
8.023128
CACACACCCAGAAAGATAAAATTACAG
58.977
37.037
0.00
0.00
0.00
2.74
506
881
6.094742
AGTGTCACATGAATTTACAACACACA
59.905
34.615
5.62
0.00
38.51
3.72
565
975
5.553952
CGGTTCGCTTTATCTACATTCGTTC
60.554
44.000
0.00
0.00
0.00
3.95
567
977
3.795101
CGGTTCGCTTTATCTACATTCGT
59.205
43.478
0.00
0.00
0.00
3.85
568
978
3.181774
CCGGTTCGCTTTATCTACATTCG
59.818
47.826
0.00
0.00
0.00
3.34
569
979
3.493503
CCCGGTTCGCTTTATCTACATTC
59.506
47.826
0.00
0.00
0.00
2.67
604
1014
4.261197
GGTGTTTGCCAAGTTTCTCTGTAG
60.261
45.833
0.00
0.00
0.00
2.74
605
1015
3.630312
GGTGTTTGCCAAGTTTCTCTGTA
59.370
43.478
0.00
0.00
0.00
2.74
606
1016
2.427095
GGTGTTTGCCAAGTTTCTCTGT
59.573
45.455
0.00
0.00
0.00
3.41
607
1017
2.541588
CGGTGTTTGCCAAGTTTCTCTG
60.542
50.000
0.00
0.00
0.00
3.35
728
1153
4.223032
ACTGGTGAGAGTGGATAAAATCGT
59.777
41.667
0.00
0.00
0.00
3.73
1139
1588
2.159310
CGAAACAGAAACCAAGCACCAA
60.159
45.455
0.00
0.00
0.00
3.67
1145
1594
3.561725
AGAAGAGCGAAACAGAAACCAAG
59.438
43.478
0.00
0.00
0.00
3.61
1164
1613
2.113774
CCAGCCACCACTGCAGAA
59.886
61.111
23.35
0.00
36.29
3.02
1266
1715
2.045926
GACCTCGCAACCAGCCAT
60.046
61.111
0.00
0.00
41.38
4.40
1277
1726
4.415332
CCGTGACACCCGACCTCG
62.415
72.222
0.00
0.00
39.44
4.63
1278
1727
4.736896
GCCGTGACACCCGACCTC
62.737
72.222
0.00
0.00
0.00
3.85
1311
1760
0.747255
ACGAATCCTCAGGGTCATCG
59.253
55.000
0.00
0.00
38.20
3.84
1320
1769
1.550130
AAAGCCCCGACGAATCCTCA
61.550
55.000
0.00
0.00
0.00
3.86
1338
1787
0.693049
GAGGAGGCCTGAAACCTGAA
59.307
55.000
12.00
0.00
37.77
3.02
1451
1900
4.750098
ACGCTCCATAACTTCCATATTTCG
59.250
41.667
0.00
0.00
0.00
3.46
1596
2047
7.461749
ACAGAAGGAAGGAAAGTATCAAATCA
58.538
34.615
0.00
0.00
0.00
2.57
1721
2177
8.963725
AGGGTTTATAAATACCTTAACAACTGC
58.036
33.333
15.07
0.00
34.75
4.40
1838
2294
3.713858
TCACCAACAGATTGTTTGCAG
57.286
42.857
0.00
0.00
38.77
4.41
1961
2419
2.959421
AGAAGACCCCTCTGATCCTT
57.041
50.000
0.00
0.00
0.00
3.36
1988
2446
1.889105
CGCCACAACAGCAGTCACT
60.889
57.895
0.00
0.00
0.00
3.41
2002
2460
7.255104
CCATAGCTATAAACAAAAAGATCGCCA
60.255
37.037
5.77
0.00
0.00
5.69
2075
2533
3.879295
TCTTTGCAATATAGTGCTGAGCC
59.121
43.478
24.07
0.00
45.17
4.70
2185
2643
3.423539
AGCTCTGATGGTTAGCAACAA
57.576
42.857
0.00
0.00
38.75
2.83
2309
2767
1.674817
CGCCGTAAAGGAATGACACCT
60.675
52.381
0.00
0.00
45.00
4.00
2709
3169
1.633945
AGAAAAATACAGACGCCCCCT
59.366
47.619
0.00
0.00
0.00
4.79
2796
3256
7.596494
AGCGTAGTACACACAAGAGTAAAATA
58.404
34.615
0.38
0.00
0.00
1.40
2835
3305
9.661563
AATTATAAAATGTCAGTACTTCACGGA
57.338
29.630
0.00
0.00
0.00
4.69
2844
3314
9.515226
GCTGGGGATAATTATAAAATGTCAGTA
57.485
33.333
0.00
0.00
0.00
2.74
2929
3399
0.038166
GCATCAGTTTCCCTGTCCCA
59.962
55.000
0.00
0.00
42.19
4.37
3097
3567
1.411246
GGAAAAACCACCCACTTCCAC
59.589
52.381
0.00
0.00
36.39
4.02
3110
3580
8.010733
TCCATGATCCATTGAATAGGAAAAAC
57.989
34.615
0.00
0.00
37.48
2.43
3755
4237
8.812513
AATCCAGATGAATTCTTTGACACATA
57.187
30.769
7.05
0.00
29.93
2.29
3907
4395
5.935206
TCGGTTACTGATATGCACTTGAAAA
59.065
36.000
0.00
0.00
0.00
2.29
3909
4397
5.079689
TCGGTTACTGATATGCACTTGAA
57.920
39.130
0.00
0.00
0.00
2.69
3910
4398
4.159693
ACTCGGTTACTGATATGCACTTGA
59.840
41.667
0.00
0.00
0.00
3.02
3911
4399
4.433615
ACTCGGTTACTGATATGCACTTG
58.566
43.478
0.00
0.00
0.00
3.16
3912
4400
4.737855
ACTCGGTTACTGATATGCACTT
57.262
40.909
0.00
0.00
0.00
3.16
3915
4403
3.702330
CGAACTCGGTTACTGATATGCA
58.298
45.455
0.00
0.00
35.37
3.96
3942
4431
1.081641
GACAAGAACGTCTCGGCGA
60.082
57.895
10.14
10.14
35.59
5.54
3947
4436
2.666069
CGAGTCAGGACAAGAACGTCTC
60.666
54.545
1.84
0.00
36.12
3.36
3952
4441
2.801111
GTTTCCGAGTCAGGACAAGAAC
59.199
50.000
1.84
3.05
40.56
3.01
3968
4457
1.347097
GCGTCGTACGGGAAGTTTCC
61.347
60.000
16.52
2.17
46.82
3.13
3969
4458
0.387750
AGCGTCGTACGGGAAGTTTC
60.388
55.000
16.52
0.00
42.82
2.78
3970
4459
0.881118
TAGCGTCGTACGGGAAGTTT
59.119
50.000
16.52
0.00
42.82
2.66
3971
4460
0.449388
CTAGCGTCGTACGGGAAGTT
59.551
55.000
16.52
5.25
42.82
2.66
3972
4461
1.372087
CCTAGCGTCGTACGGGAAGT
61.372
60.000
16.52
0.00
42.82
3.01
3973
4462
1.354506
CCTAGCGTCGTACGGGAAG
59.645
63.158
16.52
8.76
42.82
3.46
3974
4463
2.114670
CCCTAGCGTCGTACGGGAA
61.115
63.158
16.52
0.00
42.82
3.97
3975
4464
2.514592
CCCTAGCGTCGTACGGGA
60.515
66.667
16.52
0.00
42.82
5.14
3976
4465
2.825836
ACCCTAGCGTCGTACGGG
60.826
66.667
16.52
9.15
42.82
5.28
3977
4466
1.372087
AAGACCCTAGCGTCGTACGG
61.372
60.000
16.52
0.69
42.82
4.02
3978
4467
0.247974
CAAGACCCTAGCGTCGTACG
60.248
60.000
9.53
9.53
45.88
3.67
3979
4468
0.525029
GCAAGACCCTAGCGTCGTAC
60.525
60.000
1.93
0.00
37.85
3.67
3980
4469
1.660560
GGCAAGACCCTAGCGTCGTA
61.661
60.000
1.93
0.00
37.85
3.43
3981
4470
2.572284
GCAAGACCCTAGCGTCGT
59.428
61.111
1.93
0.00
37.85
4.34
3982
4471
2.202756
GGCAAGACCCTAGCGTCG
60.203
66.667
1.93
0.00
37.85
5.12
3983
4472
1.142097
GAGGCAAGACCCTAGCGTC
59.858
63.158
0.00
0.00
40.58
5.19
3984
4473
2.359967
GGAGGCAAGACCCTAGCGT
61.360
63.158
0.00
0.00
40.58
5.07
3985
4474
2.022240
GAGGAGGCAAGACCCTAGCG
62.022
65.000
0.00
0.00
40.58
4.26
3986
4475
0.978146
TGAGGAGGCAAGACCCTAGC
60.978
60.000
0.00
0.00
40.58
3.42
3987
4476
1.415659
CATGAGGAGGCAAGACCCTAG
59.584
57.143
0.00
0.00
40.58
3.02
3988
4477
1.273838
ACATGAGGAGGCAAGACCCTA
60.274
52.381
0.00
0.00
40.58
3.53
3989
4478
0.548682
ACATGAGGAGGCAAGACCCT
60.549
55.000
0.00
0.00
40.58
4.34
3990
4479
0.329596
AACATGAGGAGGCAAGACCC
59.670
55.000
0.00
0.00
40.58
4.46
3991
4480
3.010420
GTTAACATGAGGAGGCAAGACC
58.990
50.000
0.00
0.00
39.61
3.85
3992
4481
2.673368
CGTTAACATGAGGAGGCAAGAC
59.327
50.000
6.39
0.00
0.00
3.01
3993
4482
2.354704
CCGTTAACATGAGGAGGCAAGA
60.355
50.000
6.39
0.00
0.00
3.02
3994
4483
2.009774
CCGTTAACATGAGGAGGCAAG
58.990
52.381
6.39
0.00
0.00
4.01
3995
4484
1.626321
TCCGTTAACATGAGGAGGCAA
59.374
47.619
6.39
0.00
0.00
4.52
3996
4485
1.271856
TCCGTTAACATGAGGAGGCA
58.728
50.000
6.39
0.00
0.00
4.75
3997
4486
2.396590
TTCCGTTAACATGAGGAGGC
57.603
50.000
6.39
0.00
33.89
4.70
3998
4487
3.206150
CCATTCCGTTAACATGAGGAGG
58.794
50.000
6.39
0.00
33.89
4.30
3999
4488
3.206150
CCCATTCCGTTAACATGAGGAG
58.794
50.000
6.39
0.00
33.89
3.69
4000
4489
2.682563
GCCCATTCCGTTAACATGAGGA
60.683
50.000
6.39
1.03
0.00
3.71
4001
4490
1.676006
GCCCATTCCGTTAACATGAGG
59.324
52.381
6.39
6.90
0.00
3.86
4002
4491
2.643551
AGCCCATTCCGTTAACATGAG
58.356
47.619
6.39
0.00
0.00
2.90
4003
4492
2.799126
AGCCCATTCCGTTAACATGA
57.201
45.000
6.39
0.00
0.00
3.07
4004
4493
3.866883
AAAGCCCATTCCGTTAACATG
57.133
42.857
6.39
2.09
0.00
3.21
4005
4494
3.697542
GGTAAAGCCCATTCCGTTAACAT
59.302
43.478
6.39
0.00
0.00
2.71
4006
4495
3.083293
GGTAAAGCCCATTCCGTTAACA
58.917
45.455
6.39
0.00
0.00
2.41
4007
4496
3.349927
AGGTAAAGCCCATTCCGTTAAC
58.650
45.455
0.00
0.00
38.26
2.01
4008
4497
3.724732
AGGTAAAGCCCATTCCGTTAA
57.275
42.857
0.00
0.00
38.26
2.01
4009
4498
3.613030
GAAGGTAAAGCCCATTCCGTTA
58.387
45.455
0.00
0.00
38.26
3.18
4010
4499
2.443416
GAAGGTAAAGCCCATTCCGTT
58.557
47.619
0.00
0.00
38.26
4.44
4011
4500
1.340697
GGAAGGTAAAGCCCATTCCGT
60.341
52.381
0.00
0.00
38.26
4.69
4012
4501
1.389555
GGAAGGTAAAGCCCATTCCG
58.610
55.000
0.00
0.00
38.26
4.30
4013
4502
1.288037
AGGGAAGGTAAAGCCCATTCC
59.712
52.381
0.00
0.00
44.55
3.01
4014
4503
2.379005
CAGGGAAGGTAAAGCCCATTC
58.621
52.381
0.00
0.00
44.55
2.67
4015
4504
1.619704
GCAGGGAAGGTAAAGCCCATT
60.620
52.381
0.00
0.00
44.55
3.16
4016
4505
0.033109
GCAGGGAAGGTAAAGCCCAT
60.033
55.000
0.00
0.00
44.55
4.00
4017
4506
1.382629
GCAGGGAAGGTAAAGCCCA
59.617
57.895
0.00
0.00
44.55
5.36
4018
4507
1.379977
GGCAGGGAAGGTAAAGCCC
60.380
63.158
0.00
0.00
42.37
5.19
4019
4508
1.749258
CGGCAGGGAAGGTAAAGCC
60.749
63.158
0.00
0.00
38.73
4.35
4020
4509
0.608308
AACGGCAGGGAAGGTAAAGC
60.608
55.000
0.00
0.00
0.00
3.51
4021
4510
1.165270
CAACGGCAGGGAAGGTAAAG
58.835
55.000
0.00
0.00
0.00
1.85
4022
4511
0.891904
GCAACGGCAGGGAAGGTAAA
60.892
55.000
0.00
0.00
40.72
2.01
4023
4512
1.302993
GCAACGGCAGGGAAGGTAA
60.303
57.895
0.00
0.00
40.72
2.85
4024
4513
2.221299
AGCAACGGCAGGGAAGGTA
61.221
57.895
0.00
0.00
44.61
3.08
4025
4514
3.570212
AGCAACGGCAGGGAAGGT
61.570
61.111
0.00
0.00
44.61
3.50
4026
4515
3.058160
CAGCAACGGCAGGGAAGG
61.058
66.667
0.00
0.00
44.61
3.46
4027
4516
3.741476
GCAGCAACGGCAGGGAAG
61.741
66.667
0.00
0.00
44.61
3.46
4028
4517
4.269523
AGCAGCAACGGCAGGGAA
62.270
61.111
0.00
0.00
44.61
3.97
4036
4525
2.952291
AAAAACGGGCAGCAGCAACG
62.952
55.000
14.13
14.13
44.61
4.10
4037
4526
1.227234
AAAAACGGGCAGCAGCAAC
60.227
52.632
2.65
0.00
44.61
4.17
4038
4527
3.215245
AAAAACGGGCAGCAGCAA
58.785
50.000
2.65
0.00
44.61
3.91
4055
4544
9.541143
ACTGAGTGAAAAAGAACAAAAGAAAAA
57.459
25.926
0.00
0.00
0.00
1.94
4056
4545
9.541143
AACTGAGTGAAAAAGAACAAAAGAAAA
57.459
25.926
0.00
0.00
0.00
2.29
4057
4546
9.541143
AAACTGAGTGAAAAAGAACAAAAGAAA
57.459
25.926
0.00
0.00
0.00
2.52
4058
4547
9.541143
AAAACTGAGTGAAAAAGAACAAAAGAA
57.459
25.926
0.00
0.00
0.00
2.52
4059
4548
9.191995
GAAAACTGAGTGAAAAAGAACAAAAGA
57.808
29.630
0.00
0.00
0.00
2.52
4060
4549
9.196552
AGAAAACTGAGTGAAAAAGAACAAAAG
57.803
29.630
0.00
0.00
0.00
2.27
4061
4550
9.541143
AAGAAAACTGAGTGAAAAAGAACAAAA
57.459
25.926
0.00
0.00
0.00
2.44
4062
4551
9.541143
AAAGAAAACTGAGTGAAAAAGAACAAA
57.459
25.926
0.00
0.00
0.00
2.83
4063
4552
8.977505
CAAAGAAAACTGAGTGAAAAAGAACAA
58.022
29.630
0.00
0.00
0.00
2.83
4064
4553
8.141268
ACAAAGAAAACTGAGTGAAAAAGAACA
58.859
29.630
0.00
0.00
0.00
3.18
4065
4554
8.520835
ACAAAGAAAACTGAGTGAAAAAGAAC
57.479
30.769
0.00
0.00
0.00
3.01
4066
4555
8.576442
AGACAAAGAAAACTGAGTGAAAAAGAA
58.424
29.630
0.00
0.00
0.00
2.52
4067
4556
8.023128
CAGACAAAGAAAACTGAGTGAAAAAGA
58.977
33.333
0.00
0.00
32.90
2.52
4068
4557
8.023128
TCAGACAAAGAAAACTGAGTGAAAAAG
58.977
33.333
0.00
0.00
35.01
2.27
4069
4558
7.881142
TCAGACAAAGAAAACTGAGTGAAAAA
58.119
30.769
0.00
0.00
35.01
1.94
4070
4559
7.447374
TCAGACAAAGAAAACTGAGTGAAAA
57.553
32.000
0.00
0.00
35.01
2.29
4071
4560
7.630242
ATCAGACAAAGAAAACTGAGTGAAA
57.370
32.000
0.00
0.00
41.55
2.69
4072
4561
7.630242
AATCAGACAAAGAAAACTGAGTGAA
57.370
32.000
0.00
0.00
41.55
3.18
4073
4562
7.630242
AAATCAGACAAAGAAAACTGAGTGA
57.370
32.000
0.00
0.00
41.55
3.41
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.