Multiple sequence alignment - TraesCS1D01G168900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G168900 chr1D 100.000 4098 0 0 1 4098 241234756 241238853 0.000000e+00 7568
1 TraesCS1D01G168900 chr1B 93.329 3463 157 38 526 3961 332808714 332805299 0.000000e+00 5048
2 TraesCS1D01G168900 chr1B 87.992 533 44 9 1 526 332809267 332808748 2.710000e-171 612
3 TraesCS1D01G168900 chr1A 91.340 2321 104 37 265 2535 306117456 306119729 0.000000e+00 3083
4 TraesCS1D01G168900 chr1A 95.590 1338 45 7 2568 3893 306119729 306121064 0.000000e+00 2132
5 TraesCS1D01G168900 chr1A 85.448 268 24 6 5 266 306116831 306117089 8.730000e-67 265
6 TraesCS1D01G168900 chr1A 93.684 95 5 1 3216 3309 498694264 498694170 1.540000e-29 141
7 TraesCS1D01G168900 chrUn 93.684 95 5 1 3216 3309 380590999 380590905 1.540000e-29 141
8 TraesCS1D01G168900 chrUn 93.684 95 5 1 3216 3309 395675553 395675459 1.540000e-29 141
9 TraesCS1D01G168900 chrUn 93.684 95 5 1 3216 3309 453336062 453335968 1.540000e-29 141
10 TraesCS1D01G168900 chr7D 93.684 95 5 1 3216 3309 203496964 203497058 1.540000e-29 141
11 TraesCS1D01G168900 chr6D 93.684 95 5 1 3216 3309 124514489 124514583 1.540000e-29 141
12 TraesCS1D01G168900 chr4D 93.684 95 5 1 3216 3309 123332435 123332529 1.540000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G168900 chr1D 241234756 241238853 4097 False 7568.000000 7568 100.000000 1 4098 1 chr1D.!!$F1 4097
1 TraesCS1D01G168900 chr1B 332805299 332809267 3968 True 2830.000000 5048 90.660500 1 3961 2 chr1B.!!$R1 3960
2 TraesCS1D01G168900 chr1A 306116831 306121064 4233 False 1826.666667 3083 90.792667 5 3893 3 chr1A.!!$F1 3888


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 220 0.244178 GTCGACTCAGGGTTCCAGTC 59.756 60.000 8.7 0.0 34.36 3.51 F
249 256 1.344438 AGCTGACGTTCATGGTCTTCA 59.656 47.619 0.0 0.0 35.45 3.02 F
671 1091 1.359459 CCGTTTTGCCCGAGTCTAGC 61.359 60.000 0.0 0.0 0.00 3.42 F
1164 1613 1.604278 GCTTGGTTTCTGTTTCGCTCT 59.396 47.619 0.0 0.0 0.00 4.09 F
2554 3012 0.696501 ACGCCCAAACCTGATAACCT 59.303 50.000 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1787 0.693049 GAGGAGGCCTGAAACCTGAA 59.307 55.000 12.0 0.0 37.77 3.02 R
1988 2446 1.889105 CGCCACAACAGCAGTCACT 60.889 57.895 0.0 0.0 0.00 3.41 R
2309 2767 1.674817 CGCCGTAAAGGAATGACACCT 60.675 52.381 0.0 0.0 45.00 4.00 R
2929 3399 0.038166 GCATCAGTTTCCCTGTCCCA 59.962 55.000 0.0 0.0 42.19 4.37 R
4016 4505 0.033109 GCAGGGAAGGTAAAGCCCAT 60.033 55.000 0.0 0.0 44.55 4.00 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 87 3.699038 TCTTTGAGTTTGGTTTGGGACAG 59.301 43.478 0.00 0.00 42.39 3.51
148 154 9.476202 TCTTTCATTATGTTGGTATGTCTATCG 57.524 33.333 0.00 0.00 0.00 2.92
150 156 9.996554 TTTCATTATGTTGGTATGTCTATCGAT 57.003 29.630 2.16 2.16 0.00 3.59
213 220 0.244178 GTCGACTCAGGGTTCCAGTC 59.756 60.000 8.70 0.00 34.36 3.51
240 247 3.385193 TCTTGATTCAGCTGACGTTCA 57.615 42.857 18.03 16.53 0.00 3.18
249 256 1.344438 AGCTGACGTTCATGGTCTTCA 59.656 47.619 0.00 0.00 35.45 3.02
266 640 5.649831 GGTCTTCAGAGTTTTTGCATATCCT 59.350 40.000 0.00 0.00 0.00 3.24
272 646 8.027524 TCAGAGTTTTTGCATATCCTCTATCT 57.972 34.615 6.26 0.00 0.00 1.98
279 653 8.579850 TTTTGCATATCCTCTATCTGTGTTTT 57.420 30.769 0.00 0.00 0.00 2.43
326 700 4.680708 CGTTGGTGTCTCCTAGTATGCATT 60.681 45.833 3.54 0.00 37.07 3.56
399 773 3.349879 AAAAATTTCCCGCCCGAGA 57.650 47.368 0.00 0.00 0.00 4.04
400 774 1.847328 AAAAATTTCCCGCCCGAGAT 58.153 45.000 0.00 0.00 0.00 2.75
450 824 1.548719 CATACCTCCGCCGATGGATAA 59.451 52.381 2.58 0.00 37.41 1.75
480 855 3.193479 AGAAGATTTCGGCACCCAAAATC 59.807 43.478 11.55 11.55 38.89 2.17
483 858 2.517650 TTTCGGCACCCAAAATCAAC 57.482 45.000 0.00 0.00 0.00 3.18
506 881 8.576442 CAACTGTAATTTTATCTTTCTGGGTGT 58.424 33.333 0.00 0.00 0.00 4.16
545 955 8.201242 TCATGTGACACTTAATATATGGCCTA 57.799 34.615 3.32 0.00 0.00 3.93
671 1091 1.359459 CCGTTTTGCCCGAGTCTAGC 61.359 60.000 0.00 0.00 0.00 3.42
769 1194 3.423154 CACCAACGGAGCTTCGCC 61.423 66.667 16.11 0.00 0.00 5.54
958 1406 4.927782 TTGCCGCCTGTTCGTGCT 62.928 61.111 0.00 0.00 0.00 4.40
1139 1588 4.041321 TGCTGCTGCTGATCCTATCTTATT 59.959 41.667 17.00 0.00 40.48 1.40
1145 1594 5.065914 TGCTGATCCTATCTTATTTGGTGC 58.934 41.667 0.00 0.00 0.00 5.01
1164 1613 1.604278 GCTTGGTTTCTGTTTCGCTCT 59.396 47.619 0.00 0.00 0.00 4.09
1338 1787 1.961180 CTGAGGATTCGTCGGGGCTT 61.961 60.000 7.21 0.00 0.00 4.35
1477 1926 7.758076 CGAAATATGGAAGTTATGGAGCGTATA 59.242 37.037 0.00 0.00 0.00 1.47
1596 2047 6.789457 TCATTTCAGTATGGACCAGAGGATAT 59.211 38.462 0.00 0.00 36.16 1.63
1721 2177 9.672673 TTTAGATTAATTTCAGAGGGAGAACAG 57.327 33.333 0.00 0.00 0.00 3.16
1853 2309 6.209192 TCCACATATTCTGCAAACAATCTGTT 59.791 34.615 0.00 0.00 43.41 3.16
1961 2419 1.612462 CCAGATCTGCAAGTGGCTTCA 60.612 52.381 17.76 0.00 45.15 3.02
1985 2443 4.171841 AGGATCAGAGGGGTCTTCTTCTAT 59.828 45.833 0.00 0.00 0.00 1.98
1988 2446 2.768527 CAGAGGGGTCTTCTTCTATGCA 59.231 50.000 0.00 0.00 0.00 3.96
2185 2643 2.171448 CCAATAGTAGCCCTGCTGTCTT 59.829 50.000 0.00 0.00 40.10 3.01
2309 2767 4.853468 TGGTTGGGCAATGTATCTCTTA 57.147 40.909 0.00 0.00 0.00 2.10
2393 2851 4.507512 CCCTTCCTTTTTCAGTAGGCTCTT 60.508 45.833 0.00 0.00 0.00 2.85
2551 3009 2.294074 GCATACGCCCAAACCTGATAA 58.706 47.619 0.00 0.00 0.00 1.75
2554 3012 0.696501 ACGCCCAAACCTGATAACCT 59.303 50.000 0.00 0.00 0.00 3.50
2556 3014 2.508300 ACGCCCAAACCTGATAACCTAT 59.492 45.455 0.00 0.00 0.00 2.57
2557 3015 3.053917 ACGCCCAAACCTGATAACCTATT 60.054 43.478 0.00 0.00 0.00 1.73
2558 3016 3.951680 CGCCCAAACCTGATAACCTATTT 59.048 43.478 0.00 0.00 0.00 1.40
2559 3017 4.401202 CGCCCAAACCTGATAACCTATTTT 59.599 41.667 0.00 0.00 0.00 1.82
2560 3018 5.660460 GCCCAAACCTGATAACCTATTTTG 58.340 41.667 0.00 0.00 0.00 2.44
2564 3022 8.808092 CCCAAACCTGATAACCTATTTTGTTTA 58.192 33.333 0.00 0.00 0.00 2.01
2709 3169 3.429547 CGGTGTGTGGATTTGGTGAAAAA 60.430 43.478 0.00 0.00 0.00 1.94
2796 3256 2.301009 AGGTTAGGTTCCGTCGAATGTT 59.699 45.455 0.00 0.00 0.00 2.71
2835 3305 6.750963 GTGTACTACGCTATTAGCTTTCAGTT 59.249 38.462 13.55 0.00 39.60 3.16
2836 3306 6.971184 TGTACTACGCTATTAGCTTTCAGTTC 59.029 38.462 13.55 8.89 39.60 3.01
2837 3307 5.349809 ACTACGCTATTAGCTTTCAGTTCC 58.650 41.667 13.55 0.00 39.60 3.62
2838 3308 3.187700 ACGCTATTAGCTTTCAGTTCCG 58.812 45.455 13.55 0.00 39.60 4.30
2839 3309 3.187700 CGCTATTAGCTTTCAGTTCCGT 58.812 45.455 13.55 0.00 39.60 4.69
2840 3310 3.000322 CGCTATTAGCTTTCAGTTCCGTG 60.000 47.826 13.55 0.00 39.60 4.94
2841 3311 4.181578 GCTATTAGCTTTCAGTTCCGTGA 58.818 43.478 8.47 0.00 38.45 4.35
2842 3312 4.630069 GCTATTAGCTTTCAGTTCCGTGAA 59.370 41.667 8.47 0.00 38.45 3.18
2843 3313 5.220491 GCTATTAGCTTTCAGTTCCGTGAAG 60.220 44.000 8.47 0.00 37.72 3.02
2844 3314 2.622064 AGCTTTCAGTTCCGTGAAGT 57.378 45.000 0.00 0.00 37.72 3.01
2929 3399 6.449956 TCCTGTCATACCTATTACCCTTCTT 58.550 40.000 0.00 0.00 0.00 2.52
3097 3567 4.142609 ACATGGTTATGGAGTGCACTAG 57.857 45.455 21.73 2.47 38.66 2.57
3110 3580 0.321653 GCACTAGTGGAAGTGGGTGG 60.322 60.000 23.95 0.00 45.75 4.61
3337 3816 1.872952 GCATAATGGTATGACTGCGCA 59.127 47.619 10.98 10.98 39.72 6.09
3493 3972 5.835113 ATAACACAGATGTATTTGGTGGC 57.165 39.130 0.00 0.00 38.45 5.01
3564 4043 2.370519 TCTACCCTTGTTTGTGCAGCTA 59.629 45.455 0.00 0.00 0.00 3.32
3717 4198 9.979578 ATCTTTCACAAATTGTAGTTTGCATTA 57.020 25.926 0.00 0.00 41.61 1.90
3779 4261 8.680903 GTTATGTGTCAAAGAATTCATCTGGAT 58.319 33.333 8.44 0.00 38.79 3.41
3860 4343 6.653320 TGAGAAGATAATAAAGTTGGCACGTT 59.347 34.615 0.00 0.00 0.00 3.99
3880 4363 4.037446 CGTTGATTTCCTTTTGGGACTTGA 59.963 41.667 0.00 0.00 45.03 3.02
3893 4376 4.526970 TGGGACTTGATAAAGATGCCTTC 58.473 43.478 0.00 0.00 0.00 3.46
3915 4403 2.117423 CCCCCGGCCTTTTCAAGT 59.883 61.111 0.00 0.00 0.00 3.16
3916 4404 2.275380 CCCCCGGCCTTTTCAAGTG 61.275 63.158 0.00 0.00 0.00 3.16
3917 4405 2.650778 CCCGGCCTTTTCAAGTGC 59.349 61.111 0.00 0.00 0.00 4.40
3920 4408 1.173043 CCGGCCTTTTCAAGTGCATA 58.827 50.000 0.00 0.00 0.00 3.14
3921 4409 1.750778 CCGGCCTTTTCAAGTGCATAT 59.249 47.619 0.00 0.00 0.00 1.78
3922 4410 2.223572 CCGGCCTTTTCAAGTGCATATC 60.224 50.000 0.00 0.00 0.00 1.63
3936 4425 3.486108 GTGCATATCAGTAACCGAGTTCG 59.514 47.826 0.00 0.00 39.44 3.95
3961 4450 2.087009 CGCCGAGACGTTCTTGTCC 61.087 63.158 0.00 0.00 39.77 4.02
3962 4451 1.289380 GCCGAGACGTTCTTGTCCT 59.711 57.895 0.00 0.00 39.77 3.85
3963 4452 1.009389 GCCGAGACGTTCTTGTCCTG 61.009 60.000 0.00 0.00 39.77 3.86
3964 4453 0.596577 CCGAGACGTTCTTGTCCTGA 59.403 55.000 0.00 0.00 39.77 3.86
3965 4454 1.666311 CCGAGACGTTCTTGTCCTGAC 60.666 57.143 0.00 0.00 39.77 3.51
3966 4455 1.267261 CGAGACGTTCTTGTCCTGACT 59.733 52.381 0.00 0.00 39.77 3.41
3967 4456 2.666069 CGAGACGTTCTTGTCCTGACTC 60.666 54.545 0.00 0.00 39.77 3.36
3968 4457 1.267261 AGACGTTCTTGTCCTGACTCG 59.733 52.381 0.00 0.00 39.77 4.18
3969 4458 0.314302 ACGTTCTTGTCCTGACTCGG 59.686 55.000 0.00 0.00 0.00 4.63
3970 4459 0.596577 CGTTCTTGTCCTGACTCGGA 59.403 55.000 0.00 0.00 0.00 4.55
3971 4460 1.000607 CGTTCTTGTCCTGACTCGGAA 60.001 52.381 0.00 0.00 34.20 4.30
3972 4461 2.545113 CGTTCTTGTCCTGACTCGGAAA 60.545 50.000 0.00 0.00 34.20 3.13
3973 4462 2.801111 GTTCTTGTCCTGACTCGGAAAC 59.199 50.000 0.00 0.00 34.20 2.78
3974 4463 2.317040 TCTTGTCCTGACTCGGAAACT 58.683 47.619 0.00 0.00 34.20 2.66
3975 4464 2.698797 TCTTGTCCTGACTCGGAAACTT 59.301 45.455 0.00 0.00 34.20 2.66
3976 4465 2.814280 TGTCCTGACTCGGAAACTTC 57.186 50.000 0.00 0.00 34.20 3.01
3977 4466 1.343465 TGTCCTGACTCGGAAACTTCC 59.657 52.381 0.00 0.00 44.05 3.46
3978 4467 0.974383 TCCTGACTCGGAAACTTCCC 59.026 55.000 2.86 0.00 44.67 3.97
3979 4468 0.389948 CCTGACTCGGAAACTTCCCG 60.390 60.000 2.86 0.00 44.67 5.14
3980 4469 0.317479 CTGACTCGGAAACTTCCCGT 59.683 55.000 2.86 0.91 46.53 5.28
3981 4470 1.542915 CTGACTCGGAAACTTCCCGTA 59.457 52.381 2.86 0.00 46.53 4.02
3982 4471 1.270550 TGACTCGGAAACTTCCCGTAC 59.729 52.381 2.86 0.00 46.53 3.67
3983 4472 0.242017 ACTCGGAAACTTCCCGTACG 59.758 55.000 8.69 8.69 46.53 3.67
3984 4473 0.523072 CTCGGAAACTTCCCGTACGA 59.477 55.000 18.76 0.00 46.53 3.43
3985 4474 0.240945 TCGGAAACTTCCCGTACGAC 59.759 55.000 18.76 0.00 46.53 4.34
3986 4475 1.067199 CGGAAACTTCCCGTACGACG 61.067 60.000 18.76 6.40 44.67 5.12
3987 4476 1.347097 GGAAACTTCCCGTACGACGC 61.347 60.000 18.76 0.00 40.91 5.19
3988 4477 0.387750 GAAACTTCCCGTACGACGCT 60.388 55.000 18.76 0.00 40.91 5.07
3989 4478 0.881118 AAACTTCCCGTACGACGCTA 59.119 50.000 18.76 0.00 40.91 4.26
3990 4479 0.449388 AACTTCCCGTACGACGCTAG 59.551 55.000 18.76 8.82 40.91 3.42
3991 4480 1.354506 CTTCCCGTACGACGCTAGG 59.645 63.158 18.76 8.32 40.91 3.02
3992 4481 2.056481 CTTCCCGTACGACGCTAGGG 62.056 65.000 18.76 13.90 40.91 3.53
3993 4482 2.819984 TTCCCGTACGACGCTAGGGT 62.820 60.000 18.76 12.95 40.91 4.34
3994 4483 2.711924 CCGTACGACGCTAGGGTC 59.288 66.667 25.78 25.78 40.91 4.46
3995 4484 1.817099 CCGTACGACGCTAGGGTCT 60.817 63.158 30.31 21.41 40.91 3.85
3996 4485 1.372087 CCGTACGACGCTAGGGTCTT 61.372 60.000 30.31 25.44 40.91 3.01
3997 4486 0.247974 CGTACGACGCTAGGGTCTTG 60.248 60.000 30.31 20.94 33.65 3.02
3998 4487 0.525029 GTACGACGCTAGGGTCTTGC 60.525 60.000 30.31 23.29 34.75 4.01
3999 4488 1.660560 TACGACGCTAGGGTCTTGCC 61.661 60.000 30.31 11.06 34.75 4.52
4000 4489 2.711922 CGACGCTAGGGTCTTGCCT 61.712 63.158 30.31 1.13 37.43 4.75
4001 4490 1.142097 GACGCTAGGGTCTTGCCTC 59.858 63.158 27.65 4.91 37.43 4.70
4002 4491 2.299503 GACGCTAGGGTCTTGCCTCC 62.300 65.000 27.65 4.22 37.43 4.30
4003 4492 2.060980 CGCTAGGGTCTTGCCTCCT 61.061 63.158 0.00 0.00 37.43 3.69
4004 4493 1.826709 GCTAGGGTCTTGCCTCCTC 59.173 63.158 0.00 0.00 37.43 3.71
4005 4494 0.978146 GCTAGGGTCTTGCCTCCTCA 60.978 60.000 0.00 0.00 37.43 3.86
4006 4495 1.799933 CTAGGGTCTTGCCTCCTCAT 58.200 55.000 0.00 0.00 37.43 2.90
4007 4496 1.415659 CTAGGGTCTTGCCTCCTCATG 59.584 57.143 0.00 0.00 37.43 3.07
4008 4497 0.548682 AGGGTCTTGCCTCCTCATGT 60.549 55.000 0.00 0.00 37.43 3.21
4009 4498 0.329596 GGGTCTTGCCTCCTCATGTT 59.670 55.000 0.00 0.00 37.43 2.71
4010 4499 1.559682 GGGTCTTGCCTCCTCATGTTA 59.440 52.381 0.00 0.00 37.43 2.41
4011 4500 2.026262 GGGTCTTGCCTCCTCATGTTAA 60.026 50.000 0.00 0.00 37.43 2.01
4012 4501 3.010420 GGTCTTGCCTCCTCATGTTAAC 58.990 50.000 0.00 0.00 0.00 2.01
4013 4502 2.673368 GTCTTGCCTCCTCATGTTAACG 59.327 50.000 0.26 0.00 0.00 3.18
4014 4503 2.009774 CTTGCCTCCTCATGTTAACGG 58.990 52.381 0.26 0.00 0.00 4.44
4015 4504 1.271856 TGCCTCCTCATGTTAACGGA 58.728 50.000 0.26 0.56 0.00 4.69
4016 4505 1.626321 TGCCTCCTCATGTTAACGGAA 59.374 47.619 0.26 0.00 0.00 4.30
4017 4506 2.238646 TGCCTCCTCATGTTAACGGAAT 59.761 45.455 0.26 0.00 0.00 3.01
4018 4507 2.614057 GCCTCCTCATGTTAACGGAATG 59.386 50.000 0.26 0.00 0.00 2.67
4019 4508 3.206150 CCTCCTCATGTTAACGGAATGG 58.794 50.000 0.26 0.85 0.00 3.16
4020 4509 3.206150 CTCCTCATGTTAACGGAATGGG 58.794 50.000 0.26 0.00 0.00 4.00
4021 4510 1.676006 CCTCATGTTAACGGAATGGGC 59.324 52.381 0.26 0.00 0.00 5.36
4022 4511 2.643551 CTCATGTTAACGGAATGGGCT 58.356 47.619 0.26 0.00 0.00 5.19
4023 4512 3.016736 CTCATGTTAACGGAATGGGCTT 58.983 45.455 0.26 0.00 0.00 4.35
4024 4513 3.426615 TCATGTTAACGGAATGGGCTTT 58.573 40.909 0.26 0.00 0.00 3.51
4025 4514 4.590918 TCATGTTAACGGAATGGGCTTTA 58.409 39.130 0.26 0.00 0.00 1.85
4026 4515 4.396790 TCATGTTAACGGAATGGGCTTTAC 59.603 41.667 0.26 0.00 0.00 2.01
4027 4516 3.083293 TGTTAACGGAATGGGCTTTACC 58.917 45.455 0.26 0.00 37.93 2.85
4028 4517 3.244981 TGTTAACGGAATGGGCTTTACCT 60.245 43.478 0.26 0.00 39.10 3.08
4029 4518 2.597578 AACGGAATGGGCTTTACCTT 57.402 45.000 0.00 0.00 39.10 3.50
4030 4519 2.124277 ACGGAATGGGCTTTACCTTC 57.876 50.000 0.00 0.00 39.10 3.46
4031 4520 1.340697 ACGGAATGGGCTTTACCTTCC 60.341 52.381 0.00 0.00 39.10 3.46
4032 4521 1.776662 GGAATGGGCTTTACCTTCCC 58.223 55.000 0.00 0.00 40.47 3.97
4033 4522 1.288037 GGAATGGGCTTTACCTTCCCT 59.712 52.381 0.00 0.00 40.69 4.20
4034 4523 2.379005 GAATGGGCTTTACCTTCCCTG 58.621 52.381 0.00 0.00 40.69 4.45
4035 4524 0.033109 ATGGGCTTTACCTTCCCTGC 60.033 55.000 0.00 0.00 40.69 4.85
4036 4525 1.379977 GGGCTTTACCTTCCCTGCC 60.380 63.158 0.00 0.00 39.10 4.85
4037 4526 1.749258 GGCTTTACCTTCCCTGCCG 60.749 63.158 0.00 0.00 34.51 5.69
4038 4527 1.002502 GCTTTACCTTCCCTGCCGT 60.003 57.895 0.00 0.00 0.00 5.68
4039 4528 0.608308 GCTTTACCTTCCCTGCCGTT 60.608 55.000 0.00 0.00 0.00 4.44
4040 4529 1.165270 CTTTACCTTCCCTGCCGTTG 58.835 55.000 0.00 0.00 0.00 4.10
4041 4530 0.891904 TTTACCTTCCCTGCCGTTGC 60.892 55.000 0.00 0.00 38.26 4.17
4042 4531 1.774894 TTACCTTCCCTGCCGTTGCT 61.775 55.000 0.00 0.00 38.71 3.91
4043 4532 2.463589 TACCTTCCCTGCCGTTGCTG 62.464 60.000 0.00 0.00 38.71 4.41
4044 4533 3.741476 CTTCCCTGCCGTTGCTGC 61.741 66.667 0.00 0.00 38.71 5.25
4045 4534 4.269523 TTCCCTGCCGTTGCTGCT 62.270 61.111 0.00 0.00 38.71 4.24
4053 4542 3.964875 CGTTGCTGCTGCCCGTTT 61.965 61.111 13.47 0.00 38.71 3.60
4054 4543 2.417097 GTTGCTGCTGCCCGTTTT 59.583 55.556 13.47 0.00 38.71 2.43
4055 4544 1.227234 GTTGCTGCTGCCCGTTTTT 60.227 52.632 13.47 0.00 38.71 1.94
4081 4570 9.541143 TTTTTCTTTTGTTCTTTTTCACTCAGT 57.459 25.926 0.00 0.00 0.00 3.41
4082 4571 9.541143 TTTTCTTTTGTTCTTTTTCACTCAGTT 57.459 25.926 0.00 0.00 0.00 3.16
4083 4572 9.541143 TTTCTTTTGTTCTTTTTCACTCAGTTT 57.459 25.926 0.00 0.00 0.00 2.66
4084 4573 9.541143 TTCTTTTGTTCTTTTTCACTCAGTTTT 57.459 25.926 0.00 0.00 0.00 2.43
4085 4574 9.191995 TCTTTTGTTCTTTTTCACTCAGTTTTC 57.808 29.630 0.00 0.00 0.00 2.29
4086 4575 9.196552 CTTTTGTTCTTTTTCACTCAGTTTTCT 57.803 29.630 0.00 0.00 0.00 2.52
4087 4576 9.541143 TTTTGTTCTTTTTCACTCAGTTTTCTT 57.459 25.926 0.00 0.00 0.00 2.52
4088 4577 9.541143 TTTGTTCTTTTTCACTCAGTTTTCTTT 57.459 25.926 0.00 0.00 0.00 2.52
4089 4578 8.519492 TGTTCTTTTTCACTCAGTTTTCTTTG 57.481 30.769 0.00 0.00 0.00 2.77
4090 4579 8.141268 TGTTCTTTTTCACTCAGTTTTCTTTGT 58.859 29.630 0.00 0.00 0.00 2.83
4091 4580 8.639428 GTTCTTTTTCACTCAGTTTTCTTTGTC 58.361 33.333 0.00 0.00 0.00 3.18
4092 4581 8.110860 TCTTTTTCACTCAGTTTTCTTTGTCT 57.889 30.769 0.00 0.00 0.00 3.41
4093 4582 8.023128 TCTTTTTCACTCAGTTTTCTTTGTCTG 58.977 33.333 0.00 0.00 0.00 3.51
4094 4583 7.447374 TTTTCACTCAGTTTTCTTTGTCTGA 57.553 32.000 0.00 0.00 35.92 3.27
4095 4584 7.630242 TTTCACTCAGTTTTCTTTGTCTGAT 57.370 32.000 0.00 0.00 36.55 2.90
4096 4585 7.630242 TTCACTCAGTTTTCTTTGTCTGATT 57.370 32.000 0.00 0.00 36.55 2.57
4097 4586 7.630242 TCACTCAGTTTTCTTTGTCTGATTT 57.370 32.000 0.00 0.00 36.55 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.140536 TGTATCATTGCACAACAGGTTCA 58.859 39.130 0.00 0.00 0.00 3.18
148 154 1.067915 GCTCCAGACATCCTCGCTATC 60.068 57.143 0.00 0.00 0.00 2.08
150 156 1.109920 GGCTCCAGACATCCTCGCTA 61.110 60.000 0.00 0.00 0.00 4.26
151 157 2.430610 GGCTCCAGACATCCTCGCT 61.431 63.158 0.00 0.00 0.00 4.93
152 158 2.107953 GGCTCCAGACATCCTCGC 59.892 66.667 0.00 0.00 0.00 5.03
155 161 3.023949 GCACGGCTCCAGACATCCT 62.024 63.158 0.00 0.00 0.00 3.24
156 162 2.512515 GCACGGCTCCAGACATCC 60.513 66.667 0.00 0.00 0.00 3.51
213 220 3.555139 GTCAGCTGAATCAAGAAGGATCG 59.445 47.826 20.19 0.00 0.00 3.69
240 247 6.096001 GGATATGCAAAAACTCTGAAGACCAT 59.904 38.462 0.00 0.00 0.00 3.55
249 256 7.714377 CACAGATAGAGGATATGCAAAAACTCT 59.286 37.037 15.54 15.54 38.67 3.24
266 640 4.688879 ACGCAAATCGAAAACACAGATAGA 59.311 37.500 0.00 0.00 41.67 1.98
272 646 1.849219 GCAACGCAAATCGAAAACACA 59.151 42.857 0.00 0.00 41.67 3.72
279 653 0.110867 CGAACTGCAACGCAAATCGA 60.111 50.000 14.37 0.00 44.03 3.59
302 676 2.426024 GCATACTAGGAGACACCAACGA 59.574 50.000 0.00 0.00 42.04 3.85
326 700 9.677567 GTAGAAGCAACAAATAAAAAGTCATCA 57.322 29.630 0.00 0.00 0.00 3.07
381 755 1.476488 CATCTCGGGCGGGAAATTTTT 59.524 47.619 0.00 0.00 0.00 1.94
382 756 1.102978 CATCTCGGGCGGGAAATTTT 58.897 50.000 0.00 0.00 0.00 1.82
383 757 0.751643 CCATCTCGGGCGGGAAATTT 60.752 55.000 0.00 0.00 0.00 1.82
384 758 1.152963 CCATCTCGGGCGGGAAATT 60.153 57.895 0.00 0.00 0.00 1.82
385 759 2.044806 CTCCATCTCGGGCGGGAAAT 62.045 60.000 0.00 0.00 34.36 2.17
387 761 3.154473 CTCCATCTCGGGCGGGAA 61.154 66.667 0.00 0.00 34.36 3.97
392 766 4.247380 CTGGCCTCCATCTCGGGC 62.247 72.222 3.32 0.00 45.34 6.13
393 767 2.444706 TCTGGCCTCCATCTCGGG 60.445 66.667 3.32 0.00 30.82 5.14
394 768 2.506061 CCTCTGGCCTCCATCTCGG 61.506 68.421 3.32 0.00 30.82 4.63
395 769 3.136750 CCTCTGGCCTCCATCTCG 58.863 66.667 3.32 0.00 30.82 4.04
396 770 2.828145 GCCTCTGGCCTCCATCTC 59.172 66.667 3.32 0.00 44.06 2.75
450 824 3.691609 GTGCCGAAATCTTCTTCCTCATT 59.308 43.478 0.00 0.00 0.00 2.57
480 855 8.576442 ACACCCAGAAAGATAAAATTACAGTTG 58.424 33.333 0.00 0.00 0.00 3.16
483 858 8.023128 CACACACCCAGAAAGATAAAATTACAG 58.977 37.037 0.00 0.00 0.00 2.74
506 881 6.094742 AGTGTCACATGAATTTACAACACACA 59.905 34.615 5.62 0.00 38.51 3.72
565 975 5.553952 CGGTTCGCTTTATCTACATTCGTTC 60.554 44.000 0.00 0.00 0.00 3.95
567 977 3.795101 CGGTTCGCTTTATCTACATTCGT 59.205 43.478 0.00 0.00 0.00 3.85
568 978 3.181774 CCGGTTCGCTTTATCTACATTCG 59.818 47.826 0.00 0.00 0.00 3.34
569 979 3.493503 CCCGGTTCGCTTTATCTACATTC 59.506 47.826 0.00 0.00 0.00 2.67
604 1014 4.261197 GGTGTTTGCCAAGTTTCTCTGTAG 60.261 45.833 0.00 0.00 0.00 2.74
605 1015 3.630312 GGTGTTTGCCAAGTTTCTCTGTA 59.370 43.478 0.00 0.00 0.00 2.74
606 1016 2.427095 GGTGTTTGCCAAGTTTCTCTGT 59.573 45.455 0.00 0.00 0.00 3.41
607 1017 2.541588 CGGTGTTTGCCAAGTTTCTCTG 60.542 50.000 0.00 0.00 0.00 3.35
728 1153 4.223032 ACTGGTGAGAGTGGATAAAATCGT 59.777 41.667 0.00 0.00 0.00 3.73
1139 1588 2.159310 CGAAACAGAAACCAAGCACCAA 60.159 45.455 0.00 0.00 0.00 3.67
1145 1594 3.561725 AGAAGAGCGAAACAGAAACCAAG 59.438 43.478 0.00 0.00 0.00 3.61
1164 1613 2.113774 CCAGCCACCACTGCAGAA 59.886 61.111 23.35 0.00 36.29 3.02
1266 1715 2.045926 GACCTCGCAACCAGCCAT 60.046 61.111 0.00 0.00 41.38 4.40
1277 1726 4.415332 CCGTGACACCCGACCTCG 62.415 72.222 0.00 0.00 39.44 4.63
1278 1727 4.736896 GCCGTGACACCCGACCTC 62.737 72.222 0.00 0.00 0.00 3.85
1311 1760 0.747255 ACGAATCCTCAGGGTCATCG 59.253 55.000 0.00 0.00 38.20 3.84
1320 1769 1.550130 AAAGCCCCGACGAATCCTCA 61.550 55.000 0.00 0.00 0.00 3.86
1338 1787 0.693049 GAGGAGGCCTGAAACCTGAA 59.307 55.000 12.00 0.00 37.77 3.02
1451 1900 4.750098 ACGCTCCATAACTTCCATATTTCG 59.250 41.667 0.00 0.00 0.00 3.46
1596 2047 7.461749 ACAGAAGGAAGGAAAGTATCAAATCA 58.538 34.615 0.00 0.00 0.00 2.57
1721 2177 8.963725 AGGGTTTATAAATACCTTAACAACTGC 58.036 33.333 15.07 0.00 34.75 4.40
1838 2294 3.713858 TCACCAACAGATTGTTTGCAG 57.286 42.857 0.00 0.00 38.77 4.41
1961 2419 2.959421 AGAAGACCCCTCTGATCCTT 57.041 50.000 0.00 0.00 0.00 3.36
1988 2446 1.889105 CGCCACAACAGCAGTCACT 60.889 57.895 0.00 0.00 0.00 3.41
2002 2460 7.255104 CCATAGCTATAAACAAAAAGATCGCCA 60.255 37.037 5.77 0.00 0.00 5.69
2075 2533 3.879295 TCTTTGCAATATAGTGCTGAGCC 59.121 43.478 24.07 0.00 45.17 4.70
2185 2643 3.423539 AGCTCTGATGGTTAGCAACAA 57.576 42.857 0.00 0.00 38.75 2.83
2309 2767 1.674817 CGCCGTAAAGGAATGACACCT 60.675 52.381 0.00 0.00 45.00 4.00
2709 3169 1.633945 AGAAAAATACAGACGCCCCCT 59.366 47.619 0.00 0.00 0.00 4.79
2796 3256 7.596494 AGCGTAGTACACACAAGAGTAAAATA 58.404 34.615 0.38 0.00 0.00 1.40
2835 3305 9.661563 AATTATAAAATGTCAGTACTTCACGGA 57.338 29.630 0.00 0.00 0.00 4.69
2844 3314 9.515226 GCTGGGGATAATTATAAAATGTCAGTA 57.485 33.333 0.00 0.00 0.00 2.74
2929 3399 0.038166 GCATCAGTTTCCCTGTCCCA 59.962 55.000 0.00 0.00 42.19 4.37
3097 3567 1.411246 GGAAAAACCACCCACTTCCAC 59.589 52.381 0.00 0.00 36.39 4.02
3110 3580 8.010733 TCCATGATCCATTGAATAGGAAAAAC 57.989 34.615 0.00 0.00 37.48 2.43
3755 4237 8.812513 AATCCAGATGAATTCTTTGACACATA 57.187 30.769 7.05 0.00 29.93 2.29
3907 4395 5.935206 TCGGTTACTGATATGCACTTGAAAA 59.065 36.000 0.00 0.00 0.00 2.29
3909 4397 5.079689 TCGGTTACTGATATGCACTTGAA 57.920 39.130 0.00 0.00 0.00 2.69
3910 4398 4.159693 ACTCGGTTACTGATATGCACTTGA 59.840 41.667 0.00 0.00 0.00 3.02
3911 4399 4.433615 ACTCGGTTACTGATATGCACTTG 58.566 43.478 0.00 0.00 0.00 3.16
3912 4400 4.737855 ACTCGGTTACTGATATGCACTT 57.262 40.909 0.00 0.00 0.00 3.16
3915 4403 3.702330 CGAACTCGGTTACTGATATGCA 58.298 45.455 0.00 0.00 35.37 3.96
3942 4431 1.081641 GACAAGAACGTCTCGGCGA 60.082 57.895 10.14 10.14 35.59 5.54
3947 4436 2.666069 CGAGTCAGGACAAGAACGTCTC 60.666 54.545 1.84 0.00 36.12 3.36
3952 4441 2.801111 GTTTCCGAGTCAGGACAAGAAC 59.199 50.000 1.84 3.05 40.56 3.01
3968 4457 1.347097 GCGTCGTACGGGAAGTTTCC 61.347 60.000 16.52 2.17 46.82 3.13
3969 4458 0.387750 AGCGTCGTACGGGAAGTTTC 60.388 55.000 16.52 0.00 42.82 2.78
3970 4459 0.881118 TAGCGTCGTACGGGAAGTTT 59.119 50.000 16.52 0.00 42.82 2.66
3971 4460 0.449388 CTAGCGTCGTACGGGAAGTT 59.551 55.000 16.52 5.25 42.82 2.66
3972 4461 1.372087 CCTAGCGTCGTACGGGAAGT 61.372 60.000 16.52 0.00 42.82 3.01
3973 4462 1.354506 CCTAGCGTCGTACGGGAAG 59.645 63.158 16.52 8.76 42.82 3.46
3974 4463 2.114670 CCCTAGCGTCGTACGGGAA 61.115 63.158 16.52 0.00 42.82 3.97
3975 4464 2.514592 CCCTAGCGTCGTACGGGA 60.515 66.667 16.52 0.00 42.82 5.14
3976 4465 2.825836 ACCCTAGCGTCGTACGGG 60.826 66.667 16.52 9.15 42.82 5.28
3977 4466 1.372087 AAGACCCTAGCGTCGTACGG 61.372 60.000 16.52 0.69 42.82 4.02
3978 4467 0.247974 CAAGACCCTAGCGTCGTACG 60.248 60.000 9.53 9.53 45.88 3.67
3979 4468 0.525029 GCAAGACCCTAGCGTCGTAC 60.525 60.000 1.93 0.00 37.85 3.67
3980 4469 1.660560 GGCAAGACCCTAGCGTCGTA 61.661 60.000 1.93 0.00 37.85 3.43
3981 4470 2.572284 GCAAGACCCTAGCGTCGT 59.428 61.111 1.93 0.00 37.85 4.34
3982 4471 2.202756 GGCAAGACCCTAGCGTCG 60.203 66.667 1.93 0.00 37.85 5.12
3983 4472 1.142097 GAGGCAAGACCCTAGCGTC 59.858 63.158 0.00 0.00 40.58 5.19
3984 4473 2.359967 GGAGGCAAGACCCTAGCGT 61.360 63.158 0.00 0.00 40.58 5.07
3985 4474 2.022240 GAGGAGGCAAGACCCTAGCG 62.022 65.000 0.00 0.00 40.58 4.26
3986 4475 0.978146 TGAGGAGGCAAGACCCTAGC 60.978 60.000 0.00 0.00 40.58 3.42
3987 4476 1.415659 CATGAGGAGGCAAGACCCTAG 59.584 57.143 0.00 0.00 40.58 3.02
3988 4477 1.273838 ACATGAGGAGGCAAGACCCTA 60.274 52.381 0.00 0.00 40.58 3.53
3989 4478 0.548682 ACATGAGGAGGCAAGACCCT 60.549 55.000 0.00 0.00 40.58 4.34
3990 4479 0.329596 AACATGAGGAGGCAAGACCC 59.670 55.000 0.00 0.00 40.58 4.46
3991 4480 3.010420 GTTAACATGAGGAGGCAAGACC 58.990 50.000 0.00 0.00 39.61 3.85
3992 4481 2.673368 CGTTAACATGAGGAGGCAAGAC 59.327 50.000 6.39 0.00 0.00 3.01
3993 4482 2.354704 CCGTTAACATGAGGAGGCAAGA 60.355 50.000 6.39 0.00 0.00 3.02
3994 4483 2.009774 CCGTTAACATGAGGAGGCAAG 58.990 52.381 6.39 0.00 0.00 4.01
3995 4484 1.626321 TCCGTTAACATGAGGAGGCAA 59.374 47.619 6.39 0.00 0.00 4.52
3996 4485 1.271856 TCCGTTAACATGAGGAGGCA 58.728 50.000 6.39 0.00 0.00 4.75
3997 4486 2.396590 TTCCGTTAACATGAGGAGGC 57.603 50.000 6.39 0.00 33.89 4.70
3998 4487 3.206150 CCATTCCGTTAACATGAGGAGG 58.794 50.000 6.39 0.00 33.89 4.30
3999 4488 3.206150 CCCATTCCGTTAACATGAGGAG 58.794 50.000 6.39 0.00 33.89 3.69
4000 4489 2.682563 GCCCATTCCGTTAACATGAGGA 60.683 50.000 6.39 1.03 0.00 3.71
4001 4490 1.676006 GCCCATTCCGTTAACATGAGG 59.324 52.381 6.39 6.90 0.00 3.86
4002 4491 2.643551 AGCCCATTCCGTTAACATGAG 58.356 47.619 6.39 0.00 0.00 2.90
4003 4492 2.799126 AGCCCATTCCGTTAACATGA 57.201 45.000 6.39 0.00 0.00 3.07
4004 4493 3.866883 AAAGCCCATTCCGTTAACATG 57.133 42.857 6.39 2.09 0.00 3.21
4005 4494 3.697542 GGTAAAGCCCATTCCGTTAACAT 59.302 43.478 6.39 0.00 0.00 2.71
4006 4495 3.083293 GGTAAAGCCCATTCCGTTAACA 58.917 45.455 6.39 0.00 0.00 2.41
4007 4496 3.349927 AGGTAAAGCCCATTCCGTTAAC 58.650 45.455 0.00 0.00 38.26 2.01
4008 4497 3.724732 AGGTAAAGCCCATTCCGTTAA 57.275 42.857 0.00 0.00 38.26 2.01
4009 4498 3.613030 GAAGGTAAAGCCCATTCCGTTA 58.387 45.455 0.00 0.00 38.26 3.18
4010 4499 2.443416 GAAGGTAAAGCCCATTCCGTT 58.557 47.619 0.00 0.00 38.26 4.44
4011 4500 1.340697 GGAAGGTAAAGCCCATTCCGT 60.341 52.381 0.00 0.00 38.26 4.69
4012 4501 1.389555 GGAAGGTAAAGCCCATTCCG 58.610 55.000 0.00 0.00 38.26 4.30
4013 4502 1.288037 AGGGAAGGTAAAGCCCATTCC 59.712 52.381 0.00 0.00 44.55 3.01
4014 4503 2.379005 CAGGGAAGGTAAAGCCCATTC 58.621 52.381 0.00 0.00 44.55 2.67
4015 4504 1.619704 GCAGGGAAGGTAAAGCCCATT 60.620 52.381 0.00 0.00 44.55 3.16
4016 4505 0.033109 GCAGGGAAGGTAAAGCCCAT 60.033 55.000 0.00 0.00 44.55 4.00
4017 4506 1.382629 GCAGGGAAGGTAAAGCCCA 59.617 57.895 0.00 0.00 44.55 5.36
4018 4507 1.379977 GGCAGGGAAGGTAAAGCCC 60.380 63.158 0.00 0.00 42.37 5.19
4019 4508 1.749258 CGGCAGGGAAGGTAAAGCC 60.749 63.158 0.00 0.00 38.73 4.35
4020 4509 0.608308 AACGGCAGGGAAGGTAAAGC 60.608 55.000 0.00 0.00 0.00 3.51
4021 4510 1.165270 CAACGGCAGGGAAGGTAAAG 58.835 55.000 0.00 0.00 0.00 1.85
4022 4511 0.891904 GCAACGGCAGGGAAGGTAAA 60.892 55.000 0.00 0.00 40.72 2.01
4023 4512 1.302993 GCAACGGCAGGGAAGGTAA 60.303 57.895 0.00 0.00 40.72 2.85
4024 4513 2.221299 AGCAACGGCAGGGAAGGTA 61.221 57.895 0.00 0.00 44.61 3.08
4025 4514 3.570212 AGCAACGGCAGGGAAGGT 61.570 61.111 0.00 0.00 44.61 3.50
4026 4515 3.058160 CAGCAACGGCAGGGAAGG 61.058 66.667 0.00 0.00 44.61 3.46
4027 4516 3.741476 GCAGCAACGGCAGGGAAG 61.741 66.667 0.00 0.00 44.61 3.46
4028 4517 4.269523 AGCAGCAACGGCAGGGAA 62.270 61.111 0.00 0.00 44.61 3.97
4036 4525 2.952291 AAAAACGGGCAGCAGCAACG 62.952 55.000 14.13 14.13 44.61 4.10
4037 4526 1.227234 AAAAACGGGCAGCAGCAAC 60.227 52.632 2.65 0.00 44.61 4.17
4038 4527 3.215245 AAAAACGGGCAGCAGCAA 58.785 50.000 2.65 0.00 44.61 3.91
4055 4544 9.541143 ACTGAGTGAAAAAGAACAAAAGAAAAA 57.459 25.926 0.00 0.00 0.00 1.94
4056 4545 9.541143 AACTGAGTGAAAAAGAACAAAAGAAAA 57.459 25.926 0.00 0.00 0.00 2.29
4057 4546 9.541143 AAACTGAGTGAAAAAGAACAAAAGAAA 57.459 25.926 0.00 0.00 0.00 2.52
4058 4547 9.541143 AAAACTGAGTGAAAAAGAACAAAAGAA 57.459 25.926 0.00 0.00 0.00 2.52
4059 4548 9.191995 GAAAACTGAGTGAAAAAGAACAAAAGA 57.808 29.630 0.00 0.00 0.00 2.52
4060 4549 9.196552 AGAAAACTGAGTGAAAAAGAACAAAAG 57.803 29.630 0.00 0.00 0.00 2.27
4061 4550 9.541143 AAGAAAACTGAGTGAAAAAGAACAAAA 57.459 25.926 0.00 0.00 0.00 2.44
4062 4551 9.541143 AAAGAAAACTGAGTGAAAAAGAACAAA 57.459 25.926 0.00 0.00 0.00 2.83
4063 4552 8.977505 CAAAGAAAACTGAGTGAAAAAGAACAA 58.022 29.630 0.00 0.00 0.00 2.83
4064 4553 8.141268 ACAAAGAAAACTGAGTGAAAAAGAACA 58.859 29.630 0.00 0.00 0.00 3.18
4065 4554 8.520835 ACAAAGAAAACTGAGTGAAAAAGAAC 57.479 30.769 0.00 0.00 0.00 3.01
4066 4555 8.576442 AGACAAAGAAAACTGAGTGAAAAAGAA 58.424 29.630 0.00 0.00 0.00 2.52
4067 4556 8.023128 CAGACAAAGAAAACTGAGTGAAAAAGA 58.977 33.333 0.00 0.00 32.90 2.52
4068 4557 8.023128 TCAGACAAAGAAAACTGAGTGAAAAAG 58.977 33.333 0.00 0.00 35.01 2.27
4069 4558 7.881142 TCAGACAAAGAAAACTGAGTGAAAAA 58.119 30.769 0.00 0.00 35.01 1.94
4070 4559 7.447374 TCAGACAAAGAAAACTGAGTGAAAA 57.553 32.000 0.00 0.00 35.01 2.29
4071 4560 7.630242 ATCAGACAAAGAAAACTGAGTGAAA 57.370 32.000 0.00 0.00 41.55 2.69
4072 4561 7.630242 AATCAGACAAAGAAAACTGAGTGAA 57.370 32.000 0.00 0.00 41.55 3.18
4073 4562 7.630242 AAATCAGACAAAGAAAACTGAGTGA 57.370 32.000 0.00 0.00 41.55 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.