Multiple sequence alignment - TraesCS1D01G168800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G168800 chr1D 100.000 9630 0 0 1 9630 241221332 241230961 0.000000e+00 17784.0
1 TraesCS1D01G168800 chr1D 100.000 122 0 0 9384 9505 241230594 241230715 9.730000e-55 226.0
2 TraesCS1D01G168800 chr1D 100.000 122 0 0 9263 9384 241230715 241230836 9.730000e-55 226.0
3 TraesCS1D01G168800 chr1D 100.000 41 0 0 5529 5569 241226788 241226828 1.040000e-09 76.8
4 TraesCS1D01G168800 chr1D 100.000 41 0 0 5457 5497 241226860 241226900 1.040000e-09 76.8
5 TraesCS1D01G168800 chr1A 94.936 5115 101 35 557 5528 306106556 306111655 0.000000e+00 7866.0
6 TraesCS1D01G168800 chr1A 97.669 2359 29 7 5529 7875 306111702 306114046 0.000000e+00 4028.0
7 TraesCS1D01G168800 chr1A 94.332 1482 31 8 7870 9327 306114135 306115587 0.000000e+00 2222.0
8 TraesCS1D01G168800 chr1A 87.130 575 69 4 1 575 306105331 306105900 0.000000e+00 647.0
9 TraesCS1D01G168800 chr1A 93.651 126 8 0 5395 5520 306111640 306111765 1.280000e-43 189.0
10 TraesCS1D01G168800 chr1A 93.846 65 3 1 9384 9448 306115524 306115587 7.960000e-16 97.1
11 TraesCS1D01G168800 chr1A 100.000 41 0 0 5529 5569 306111584 306111624 1.040000e-09 76.8
12 TraesCS1D01G168800 chr1A 100.000 40 0 0 9587 9626 306115584 306115623 3.730000e-09 75.0
13 TraesCS1D01G168800 chr1B 95.983 2365 62 9 5529 7875 332840600 332838251 0.000000e+00 3810.0
14 TraesCS1D01G168800 chr1B 90.394 2207 129 28 4 2146 332845709 332843522 0.000000e+00 2824.0
15 TraesCS1D01G168800 chr1B 92.292 2011 89 18 2404 4357 332843534 332841533 0.000000e+00 2795.0
16 TraesCS1D01G168800 chr1B 95.385 1300 32 15 8027 9325 332837890 332836618 0.000000e+00 2043.0
17 TraesCS1D01G168800 chr1B 93.706 1001 22 6 4558 5520 332841534 332840537 0.000000e+00 1461.0
18 TraesCS1D01G168800 chr1B 96.933 163 5 0 7871 8033 332838154 332837992 3.430000e-69 274.0
19 TraesCS1D01G168800 chr1B 92.778 180 4 2 5583 5753 121347342 121347521 1.610000e-62 252.0
20 TraesCS1D01G168800 chr7D 89.356 404 42 1 1 404 467526886 467527288 3.100000e-139 507.0
21 TraesCS1D01G168800 chr7D 89.082 403 42 2 1 402 454798832 454799233 5.190000e-137 499.0
22 TraesCS1D01G168800 chr7D 92.414 145 11 0 9447 9591 38730163 38730019 3.520000e-49 207.0
23 TraesCS1D01G168800 chr7D 93.443 61 3 1 9326 9386 38730163 38730104 1.330000e-13 89.8
24 TraesCS1D01G168800 chr5D 89.500 400 40 2 4 403 49673444 49673047 1.120000e-138 505.0
25 TraesCS1D01G168800 chr5D 89.330 403 42 1 1 403 128647813 128648214 1.120000e-138 505.0
26 TraesCS1D01G168800 chr5D 89.526 401 39 3 4 403 556993978 556993580 1.120000e-138 505.0
27 TraesCS1D01G168800 chr5D 94.118 51 3 0 3241 3291 137975048 137974998 2.880000e-10 78.7
28 TraesCS1D01G168800 chr2B 89.330 403 41 2 1 403 230522882 230523282 1.120000e-138 505.0
29 TraesCS1D01G168800 chr2B 94.558 147 7 1 9445 9591 154722642 154722497 9.730000e-55 226.0
30 TraesCS1D01G168800 chr2B 87.586 145 17 1 9444 9587 73358842 73358698 5.980000e-37 167.0
31 TraesCS1D01G168800 chr2B 95.082 61 3 0 9324 9384 154722642 154722582 7.960000e-16 97.1
32 TraesCS1D01G168800 chr3D 88.943 407 44 1 1 407 175026162 175026567 1.440000e-137 501.0
33 TraesCS1D01G168800 chr3D 95.000 40 2 0 3244 3283 573740546 573740585 8.070000e-06 63.9
34 TraesCS1D01G168800 chr3D 91.304 46 3 1 9409 9454 486745724 486745680 2.900000e-05 62.1
35 TraesCS1D01G168800 chr3D 91.304 46 3 1 9288 9333 486745724 486745680 2.900000e-05 62.1
36 TraesCS1D01G168800 chr3D 89.583 48 3 2 9287 9333 79502030 79502076 1.040000e-04 60.2
37 TraesCS1D01G168800 chr3D 89.583 48 3 2 9408 9454 79502030 79502076 1.040000e-04 60.2
38 TraesCS1D01G168800 chr7A 93.151 146 10 0 9445 9590 727721305 727721450 2.110000e-51 215.0
39 TraesCS1D01G168800 chr7A 92.517 147 8 3 9443 9587 54981209 54981354 3.520000e-49 207.0
40 TraesCS1D01G168800 chr2D 90.604 149 14 0 9445 9593 636425162 636425014 2.120000e-46 198.0
41 TraesCS1D01G168800 chr6A 89.041 146 16 0 9447 9592 19884868 19884723 2.140000e-41 182.0
42 TraesCS1D01G168800 chr6A 90.164 61 5 1 9326 9386 19884868 19884809 2.880000e-10 78.7
43 TraesCS1D01G168800 chr2A 88.889 144 16 0 9446 9589 653367743 653367600 2.760000e-40 178.0
44 TraesCS1D01G168800 chr2A 93.333 60 4 0 9325 9384 653367743 653367684 1.330000e-13 89.8
45 TraesCS1D01G168800 chr2A 91.111 45 4 0 9404 9448 459145328 459145284 2.900000e-05 62.1
46 TraesCS1D01G168800 chr2A 91.111 45 4 0 9283 9327 459145328 459145284 2.900000e-05 62.1
47 TraesCS1D01G168800 chr2A 94.737 38 2 0 9287 9324 81014768 81014805 1.040000e-04 60.2
48 TraesCS1D01G168800 chr2A 94.737 38 2 0 9408 9445 81014768 81014805 1.040000e-04 60.2
49 TraesCS1D01G168800 chr4D 86.207 145 20 0 9447 9591 266784402 266784258 3.600000e-34 158.0
50 TraesCS1D01G168800 chr5B 94.000 50 3 0 3242 3291 187046404 187046355 1.040000e-09 76.8
51 TraesCS1D01G168800 chr5B 94.872 39 0 2 3246 3284 75335201 75335165 1.040000e-04 60.2
52 TraesCS1D01G168800 chr5A 94.000 50 3 0 3242 3291 185649746 185649795 1.040000e-09 76.8
53 TraesCS1D01G168800 chr4A 97.619 42 1 0 3241 3282 356552342 356552383 1.340000e-08 73.1
54 TraesCS1D01G168800 chr4B 91.489 47 3 1 9287 9333 273981545 273981590 8.070000e-06 63.9
55 TraesCS1D01G168800 chr4B 91.489 47 3 1 9408 9454 273981545 273981590 8.070000e-06 63.9
56 TraesCS1D01G168800 chr7B 92.683 41 3 0 3251 3291 418057526 418057486 1.040000e-04 60.2
57 TraesCS1D01G168800 chr6D 94.737 38 1 1 9296 9333 14246167 14246203 3.760000e-04 58.4
58 TraesCS1D01G168800 chr6D 94.737 38 1 1 9417 9454 14246167 14246203 3.760000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G168800 chr1D 241221332 241230961 9629 False 17784.000000 17784 100.0000 1 9630 1 chr1D.!!$F1 9629
1 TraesCS1D01G168800 chr1A 306105331 306115623 10292 False 1900.112500 7866 95.1955 1 9626 8 chr1A.!!$F1 9625
2 TraesCS1D01G168800 chr1B 332836618 332845709 9091 True 2201.166667 3810 94.1155 4 9325 6 chr1B.!!$R1 9321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1670 0.660005 CTCTCTCTACTCGCATGCGC 60.660 60.000 34.45 0.00 39.59 6.09 F
1723 2458 0.110010 GCGAGCTCTGTTTCCTTTGC 60.110 55.000 12.85 0.00 0.00 3.68 F
1902 2663 1.927895 CACCTGAGTTATCTGCGTCC 58.072 55.000 0.00 0.00 0.00 4.79 F
3681 4465 0.842030 AGCCACTTGACAGGGATGGA 60.842 55.000 0.00 0.00 31.69 3.41 F
4524 5352 0.512952 CACTACACAAGCGGACAAGC 59.487 55.000 0.00 0.00 37.41 4.01 F
4528 5356 1.302033 CACAAGCGGACAAGCCTCT 60.302 57.895 0.00 0.00 38.01 3.69 F
5641 6562 1.603931 GCAAGGGCAAGAACTCAAAGC 60.604 52.381 0.00 0.00 40.72 3.51 F
6435 7368 2.794910 CACACAGTAACTGTTCGTGGAG 59.205 50.000 16.87 8.94 42.59 3.86 F
7402 8336 3.016736 TCCCTTCATTTGATTTCTCCGC 58.983 45.455 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2829 1.303309 CTCGAGTTCAATGGATGGCC 58.697 55.000 3.62 0.00 0.00 5.36 R
3681 4465 1.632409 TCTGGCCTTGATGCTCTCTTT 59.368 47.619 3.32 0.00 0.00 2.52 R
3941 4733 9.826574 AAATAAGTTACTACGCATAATTCTGGA 57.173 29.630 0.00 0.00 0.00 3.86 R
4593 5421 2.691409 AATGGTGTACACATCGGAGG 57.309 50.000 26.51 0.00 0.00 4.30 R
5721 6642 4.122776 GTGATAGGCCAACATCACTAGTG 58.877 47.826 26.02 17.17 44.94 2.74 R
6562 7495 6.258160 CACCACAAACTGAACTCTAAACTTG 58.742 40.000 0.00 0.00 0.00 3.16 R
7607 8541 0.179468 AGCACAACAGTAACACGGGT 59.821 50.000 0.00 0.00 0.00 5.28 R
7622 8556 2.079925 CCAAGGAACTAGCTGAAGCAC 58.920 52.381 4.90 0.00 40.93 4.40 R
9337 10483 0.099436 GTGATGAAGCGGTGGATTGC 59.901 55.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.328099 GCCTTCACACCGCTCCAAG 61.328 63.158 0.00 0.00 0.00 3.61
128 129 6.071560 TGTGAACTTGGAGATACATAGTCGTT 60.072 38.462 0.00 0.00 0.00 3.85
140 141 1.585267 TAGTCGTTTCCGCGTGCCTA 61.585 55.000 4.92 0.00 0.00 3.93
141 142 1.808390 GTCGTTTCCGCGTGCCTAT 60.808 57.895 4.92 0.00 0.00 2.57
168 169 2.101082 CTCTTACCCGAGCCCTTTACTC 59.899 54.545 0.00 0.00 0.00 2.59
178 179 3.500343 AGCCCTTTACTCATGCACTTTT 58.500 40.909 0.00 0.00 0.00 2.27
186 187 8.564574 CCTTTACTCATGCACTTTTACTTTGTA 58.435 33.333 0.00 0.00 0.00 2.41
191 192 9.284968 ACTCATGCACTTTTACTTTGTAATAGT 57.715 29.630 0.00 7.43 0.00 2.12
267 268 4.522405 AGCATAAGTTGTTGGTGCACATAA 59.478 37.500 20.43 10.44 38.23 1.90
292 293 8.700439 AGTGAGCCTAATTGTTTTAGGTTTTA 57.300 30.769 11.86 0.00 42.68 1.52
343 344 3.057596 TCCGCATTTGTTCAAGCCTAAAG 60.058 43.478 0.00 0.00 0.00 1.85
404 405 4.495349 CGCAACATCCATGATCTTTCACTC 60.495 45.833 0.00 0.00 33.85 3.51
449 450 4.211920 ACCGGATCCAAACTTTTCTTGAA 58.788 39.130 9.46 0.00 0.00 2.69
454 455 6.144402 CGGATCCAAACTTTTCTTGAAACATG 59.856 38.462 13.41 0.00 0.00 3.21
458 459 3.369546 ACTTTTCTTGAAACATGCCGG 57.630 42.857 0.00 0.00 0.00 6.13
478 479 2.875317 GGAAGATTGAAGATCGGGCTTC 59.125 50.000 10.12 10.12 43.53 3.86
479 480 2.629336 AGATTGAAGATCGGGCTTCC 57.371 50.000 13.22 2.00 42.79 3.46
507 508 5.128827 ACCCAGCTTCGTGAAGATCTAATTA 59.871 40.000 13.60 0.00 40.79 1.40
625 1304 1.807573 CGAGGAAGCTCAAGACCGC 60.808 63.158 0.00 0.00 0.00 5.68
824 1516 1.082756 CAACGCACGAAACCAGCTC 60.083 57.895 0.00 0.00 0.00 4.09
852 1550 1.690985 GAGTTCCTCCCCTCCCAGG 60.691 68.421 0.00 0.00 34.30 4.45
962 1665 4.415881 AATCTCTCTCTCTCTACTCGCA 57.584 45.455 0.00 0.00 0.00 5.10
963 1666 4.623932 ATCTCTCTCTCTCTACTCGCAT 57.376 45.455 0.00 0.00 0.00 4.73
964 1667 3.727726 TCTCTCTCTCTCTACTCGCATG 58.272 50.000 0.00 0.00 0.00 4.06
965 1668 2.217750 TCTCTCTCTCTACTCGCATGC 58.782 52.381 7.91 7.91 0.00 4.06
966 1669 0.940833 TCTCTCTCTACTCGCATGCG 59.059 55.000 33.61 33.61 41.35 4.73
967 1670 0.660005 CTCTCTCTACTCGCATGCGC 60.660 60.000 34.45 0.00 39.59 6.09
1491 2210 4.087892 CGGGCTCAGGGGTCAGTG 62.088 72.222 0.00 0.00 0.00 3.66
1525 2258 2.293399 GGTACACAAGTTGCCTTCTTGG 59.707 50.000 1.81 7.86 44.29 3.61
1586 2320 3.538591 CTCGGGTTAGGGTTACCAAATC 58.461 50.000 2.98 0.00 40.13 2.17
1707 2441 3.547249 GACCACCACGAACGAGCGA 62.547 63.158 8.50 0.00 34.83 4.93
1723 2458 0.110010 GCGAGCTCTGTTTCCTTTGC 60.110 55.000 12.85 0.00 0.00 3.68
1740 2478 4.159135 CCTTTGCCTTGTGATGAATAGCTT 59.841 41.667 0.00 0.00 0.00 3.74
1810 2563 2.727916 CGATTAGTTTGCTTTGTCGGGC 60.728 50.000 0.00 0.00 0.00 6.13
1876 2637 2.172717 ACTGACACAACTGGGCTTAAGT 59.827 45.455 4.02 0.00 0.00 2.24
1886 2647 3.118371 ACTGGGCTTAAGTAGTATGCACC 60.118 47.826 4.02 0.00 35.80 5.01
1902 2663 1.927895 CACCTGAGTTATCTGCGTCC 58.072 55.000 0.00 0.00 0.00 4.79
2031 2793 5.975693 TTTGAATTAGAATTTGCTCCGGT 57.024 34.783 0.00 0.00 0.00 5.28
2067 2829 5.997746 TCTGAAGAACATTGTTGGTAGAAGG 59.002 40.000 6.80 0.00 0.00 3.46
2126 2888 7.331026 TCTGTTCAGGAGAGTATACATTTTGG 58.669 38.462 5.50 0.00 0.00 3.28
2209 2981 6.366332 CACTCTTAACTCACTGTCATACCAAC 59.634 42.308 0.00 0.00 0.00 3.77
2329 3101 6.978080 GCCAGTCTTCAAATTTGTTGTTTCTA 59.022 34.615 17.47 0.00 0.00 2.10
2376 3148 9.589111 TTAATAATAAGCGTACTGAACATGTGA 57.411 29.630 0.00 0.00 0.00 3.58
2624 3402 3.272574 TGAAGTGAGGATGCTGGAATC 57.727 47.619 0.00 0.00 0.00 2.52
2661 3439 7.228906 TGAAACGTTTTACCCATTTCTACATCA 59.771 33.333 15.89 0.00 31.86 3.07
2693 3471 9.535878 TGGTTAACATTGTTGAAAGTAAATTCC 57.464 29.630 12.30 0.00 0.00 3.01
2834 3613 9.619316 TTCAAATTTTACACGTATTCCATCTTG 57.381 29.630 0.00 0.00 0.00 3.02
3032 3811 2.202388 CATGCTGCTTTCCGTGCG 60.202 61.111 0.00 0.00 0.00 5.34
3033 3812 4.107051 ATGCTGCTTTCCGTGCGC 62.107 61.111 0.00 0.00 0.00 6.09
3085 3864 4.177026 AGATACTCATGTCGTGACAAAGC 58.823 43.478 6.80 0.00 45.41 3.51
3453 4237 9.817809 GTTATTCAGGTACAAGAGAATCATGTA 57.182 33.333 0.00 0.00 46.32 2.29
3681 4465 0.842030 AGCCACTTGACAGGGATGGA 60.842 55.000 0.00 0.00 31.69 3.41
3941 4733 1.279496 TCAGTGATGGCTTGCCTAGT 58.721 50.000 13.18 0.00 0.00 2.57
4209 5037 9.793252 ATAAACAACATTCAAGCTGTCATTATC 57.207 29.630 0.00 0.00 0.00 1.75
4444 5272 8.908786 ATATGTGTCCAAGGTGATAATACTTG 57.091 34.615 0.00 0.00 40.85 3.16
4458 5286 8.840321 GTGATAATACTTGCATAGGTTTCATGT 58.160 33.333 0.00 0.00 0.00 3.21
4517 5345 3.896648 ACAATTTCCACTACACAAGCG 57.103 42.857 0.00 0.00 0.00 4.68
4518 5346 2.552315 ACAATTTCCACTACACAAGCGG 59.448 45.455 0.00 0.00 0.00 5.52
4519 5347 2.811431 CAATTTCCACTACACAAGCGGA 59.189 45.455 0.00 0.00 34.49 5.54
4520 5348 1.873698 TTTCCACTACACAAGCGGAC 58.126 50.000 0.00 0.00 36.12 4.79
4521 5349 0.753867 TTCCACTACACAAGCGGACA 59.246 50.000 0.00 0.00 36.12 4.02
4522 5350 0.753867 TCCACTACACAAGCGGACAA 59.246 50.000 0.00 0.00 31.19 3.18
4523 5351 1.148310 CCACTACACAAGCGGACAAG 58.852 55.000 0.00 0.00 27.62 3.16
4524 5352 0.512952 CACTACACAAGCGGACAAGC 59.487 55.000 0.00 0.00 37.41 4.01
4528 5356 1.302033 CACAAGCGGACAAGCCTCT 60.302 57.895 0.00 0.00 38.01 3.69
4556 5384 5.827797 AGAGTTTAAGTGAATTGAAGCCACA 59.172 36.000 0.00 0.00 33.53 4.17
4593 5421 3.343941 TGTGTAGTTTATGACCTGGGC 57.656 47.619 0.00 0.00 0.00 5.36
5179 6023 5.634118 TCAGAATTCTTCCACTGTTTCCAT 58.366 37.500 4.86 0.00 0.00 3.41
5341 6208 6.594159 AGTGTTTTTCTATATTGACGACCCAG 59.406 38.462 0.00 0.00 0.00 4.45
5505 6372 5.717119 AGTTTAATATGGTCTCACGTTCGT 58.283 37.500 0.00 0.00 0.00 3.85
5641 6562 1.603931 GCAAGGGCAAGAACTCAAAGC 60.604 52.381 0.00 0.00 40.72 3.51
6435 7368 2.794910 CACACAGTAACTGTTCGTGGAG 59.205 50.000 16.87 8.94 42.59 3.86
7061 7994 6.639563 AGTCTCTTATCTTTTTCTGCTCCTC 58.360 40.000 0.00 0.00 0.00 3.71
7171 8104 3.084039 TCCCTTCTATTTTGCTGTGCAG 58.916 45.455 0.00 0.00 40.61 4.41
7402 8336 3.016736 TCCCTTCATTTGATTTCTCCGC 58.983 45.455 0.00 0.00 0.00 5.54
7607 8541 9.087871 TCTTCCTTTCCATTTGTTTGATTCATA 57.912 29.630 0.00 0.00 0.00 2.15
7610 8544 6.818142 CCTTTCCATTTGTTTGATTCATACCC 59.182 38.462 5.02 0.00 0.00 3.69
7622 8556 4.932799 TGATTCATACCCGTGTTACTGTTG 59.067 41.667 0.00 0.00 0.00 3.33
7744 8678 0.249868 TCTGCTCGTGTTTCTGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
8233 9375 4.848562 TCTGAGTTGTCGTCTGTAATGT 57.151 40.909 0.00 0.00 0.00 2.71
8234 9376 5.196341 TCTGAGTTGTCGTCTGTAATGTT 57.804 39.130 0.00 0.00 0.00 2.71
8235 9377 5.220381 TCTGAGTTGTCGTCTGTAATGTTC 58.780 41.667 0.00 0.00 0.00 3.18
8236 9378 4.304110 TGAGTTGTCGTCTGTAATGTTCC 58.696 43.478 0.00 0.00 0.00 3.62
8237 9379 4.202172 TGAGTTGTCGTCTGTAATGTTCCA 60.202 41.667 0.00 0.00 0.00 3.53
8238 9380 4.894784 AGTTGTCGTCTGTAATGTTCCAT 58.105 39.130 0.00 0.00 0.00 3.41
8239 9381 6.032956 AGTTGTCGTCTGTAATGTTCCATA 57.967 37.500 0.00 0.00 0.00 2.74
8240 9382 5.867716 AGTTGTCGTCTGTAATGTTCCATAC 59.132 40.000 0.00 0.00 0.00 2.39
8357 9499 1.039856 TTTCCAGCTGCCTTCCAAAC 58.960 50.000 8.66 0.00 0.00 2.93
8459 9601 9.082313 AGGAAGCTTATTTTCTTCTTCATTTCA 57.918 29.630 0.00 0.00 38.86 2.69
8479 9621 5.195001 TCAACATTTTACCCTTCTTGTGC 57.805 39.130 0.00 0.00 0.00 4.57
8611 9753 8.150945 ACACACTCATCTGTTACAGAAGTTATT 58.849 33.333 19.42 0.00 44.04 1.40
8714 9856 0.404426 TGTTCCTCCTCGTCTCCTCA 59.596 55.000 0.00 0.00 0.00 3.86
8787 9929 7.280652 TGCCATTCTTTCTTTTCTTTTCCTTTG 59.719 33.333 0.00 0.00 0.00 2.77
8995 10138 3.870274 AGAAGCTTAATGGAACGTACCC 58.130 45.455 0.00 0.00 0.00 3.69
9052 10198 9.677567 GTCTGAAACAGATATTTTGTTTGCTTA 57.322 29.630 18.42 6.68 45.82 3.09
9069 10215 5.699097 TGCTTAATACTGTTCCAAACACC 57.301 39.130 0.00 0.00 36.25 4.16
9101 10247 6.855763 TTCAGCAGATGGATTTTATTTGGT 57.144 33.333 0.00 0.00 0.00 3.67
9124 10270 8.584157 TGGTCAAAATTGTTGCTAGTCAATTAT 58.416 29.630 16.61 6.85 41.44 1.28
9125 10271 8.863049 GGTCAAAATTGTTGCTAGTCAATTATG 58.137 33.333 16.61 7.09 41.44 1.90
9232 10378 6.759497 ATTTGAAAATGGTAGGACTAGCAC 57.241 37.500 12.84 2.40 44.92 4.40
9291 10437 3.369157 GGGTAGTCGTGCATTTCTTAGGT 60.369 47.826 0.00 0.00 0.00 3.08
9323 10469 5.441718 TTGGGCTACAGATTCTTGAGAAT 57.558 39.130 5.95 5.95 46.54 2.40
9324 10470 5.441718 TGGGCTACAGATTCTTGAGAATT 57.558 39.130 7.60 0.00 44.14 2.17
9325 10471 6.560003 TGGGCTACAGATTCTTGAGAATTA 57.440 37.500 7.60 0.00 44.14 1.40
9326 10472 6.586344 TGGGCTACAGATTCTTGAGAATTAG 58.414 40.000 7.60 7.01 44.14 1.73
9327 10473 5.994668 GGGCTACAGATTCTTGAGAATTAGG 59.005 44.000 7.60 3.96 44.14 2.69
9328 10474 5.468409 GGCTACAGATTCTTGAGAATTAGGC 59.532 44.000 15.62 15.62 44.14 3.93
9329 10475 6.287525 GCTACAGATTCTTGAGAATTAGGCT 58.712 40.000 7.60 0.00 44.14 4.58
9330 10476 6.202570 GCTACAGATTCTTGAGAATTAGGCTG 59.797 42.308 7.60 11.44 44.14 4.85
9331 10477 6.059787 ACAGATTCTTGAGAATTAGGCTGT 57.940 37.500 14.89 14.89 44.14 4.40
9332 10478 5.879223 ACAGATTCTTGAGAATTAGGCTGTG 59.121 40.000 17.79 5.63 44.14 3.66
9333 10479 5.879223 CAGATTCTTGAGAATTAGGCTGTGT 59.121 40.000 7.60 0.00 44.14 3.72
9334 10480 6.373774 CAGATTCTTGAGAATTAGGCTGTGTT 59.626 38.462 7.60 0.00 44.14 3.32
9335 10481 6.944862 AGATTCTTGAGAATTAGGCTGTGTTT 59.055 34.615 7.60 0.00 44.14 2.83
9336 10482 5.947228 TCTTGAGAATTAGGCTGTGTTTG 57.053 39.130 0.00 0.00 0.00 2.93
9337 10483 4.761739 TCTTGAGAATTAGGCTGTGTTTGG 59.238 41.667 0.00 0.00 0.00 3.28
9338 10484 2.819608 TGAGAATTAGGCTGTGTTTGGC 59.180 45.455 0.00 0.00 0.00 4.52
9339 10485 2.819608 GAGAATTAGGCTGTGTTTGGCA 59.180 45.455 0.00 0.00 0.00 4.92
9340 10486 3.230134 AGAATTAGGCTGTGTTTGGCAA 58.770 40.909 0.00 0.00 0.00 4.52
9341 10487 3.834231 AGAATTAGGCTGTGTTTGGCAAT 59.166 39.130 0.00 0.00 0.00 3.56
9342 10488 3.874392 ATTAGGCTGTGTTTGGCAATC 57.126 42.857 0.00 0.05 0.00 2.67
9343 10489 1.544724 TAGGCTGTGTTTGGCAATCC 58.455 50.000 0.00 0.00 0.00 3.01
9344 10490 0.469705 AGGCTGTGTTTGGCAATCCA 60.470 50.000 0.00 0.00 41.55 3.41
9345 10491 0.319813 GGCTGTGTTTGGCAATCCAC 60.320 55.000 18.42 18.42 43.33 4.02
9346 10492 0.319813 GCTGTGTTTGGCAATCCACC 60.320 55.000 20.92 8.65 43.33 4.61
9347 10493 0.039256 CTGTGTTTGGCAATCCACCG 60.039 55.000 20.92 14.30 43.33 4.94
9348 10494 1.372872 GTGTTTGGCAATCCACCGC 60.373 57.895 15.77 0.88 43.33 5.68
9349 10495 1.530419 TGTTTGGCAATCCACCGCT 60.530 52.632 0.00 0.00 43.33 5.52
9350 10496 1.112315 TGTTTGGCAATCCACCGCTT 61.112 50.000 0.00 0.00 43.33 4.68
9351 10497 0.388520 GTTTGGCAATCCACCGCTTC 60.389 55.000 0.00 0.00 43.33 3.86
9352 10498 0.825425 TTTGGCAATCCACCGCTTCA 60.825 50.000 0.00 0.00 43.33 3.02
9353 10499 0.611618 TTGGCAATCCACCGCTTCAT 60.612 50.000 0.00 0.00 43.33 2.57
9354 10500 1.031571 TGGCAATCCACCGCTTCATC 61.032 55.000 0.00 0.00 37.47 2.92
9355 10501 1.031571 GGCAATCCACCGCTTCATCA 61.032 55.000 0.00 0.00 0.00 3.07
9356 10502 0.099436 GCAATCCACCGCTTCATCAC 59.901 55.000 0.00 0.00 0.00 3.06
9357 10503 0.734889 CAATCCACCGCTTCATCACC 59.265 55.000 0.00 0.00 0.00 4.02
9358 10504 0.327924 AATCCACCGCTTCATCACCA 59.672 50.000 0.00 0.00 0.00 4.17
9359 10505 0.107508 ATCCACCGCTTCATCACCAG 60.108 55.000 0.00 0.00 0.00 4.00
9360 10506 1.746615 CCACCGCTTCATCACCAGG 60.747 63.158 0.00 0.00 0.00 4.45
9361 10507 1.746615 CACCGCTTCATCACCAGGG 60.747 63.158 0.00 0.00 0.00 4.45
9362 10508 1.918293 ACCGCTTCATCACCAGGGA 60.918 57.895 0.00 0.00 0.00 4.20
9363 10509 1.153289 CCGCTTCATCACCAGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
9364 10510 1.817099 CGCTTCATCACCAGGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
9365 10511 1.817099 GCTTCATCACCAGGGAGCG 60.817 63.158 0.00 0.00 0.00 5.03
9366 10512 1.153289 CTTCATCACCAGGGAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
9367 10513 1.612146 TTCATCACCAGGGAGCGGA 60.612 57.895 0.00 0.00 0.00 5.54
9368 10514 1.617018 TTCATCACCAGGGAGCGGAG 61.617 60.000 0.00 0.00 0.00 4.63
9402 10548 2.489971 CTTGAAAAGGGTAGTCGTGCA 58.510 47.619 0.00 0.00 41.27 4.57
9403 10549 2.851263 TGAAAAGGGTAGTCGTGCAT 57.149 45.000 0.00 0.00 0.00 3.96
9404 10550 3.134574 TGAAAAGGGTAGTCGTGCATT 57.865 42.857 0.00 0.00 0.00 3.56
9405 10551 3.482436 TGAAAAGGGTAGTCGTGCATTT 58.518 40.909 0.00 0.00 0.00 2.32
9406 10552 3.500680 TGAAAAGGGTAGTCGTGCATTTC 59.499 43.478 0.00 0.00 0.00 2.17
9407 10553 3.418684 AAAGGGTAGTCGTGCATTTCT 57.581 42.857 0.00 0.00 0.00 2.52
9408 10554 3.418684 AAGGGTAGTCGTGCATTTCTT 57.581 42.857 0.00 0.00 0.00 2.52
9409 10555 4.546829 AAGGGTAGTCGTGCATTTCTTA 57.453 40.909 0.00 0.00 0.00 2.10
9410 10556 4.124851 AGGGTAGTCGTGCATTTCTTAG 57.875 45.455 0.00 0.00 0.00 2.18
9411 10557 3.118738 AGGGTAGTCGTGCATTTCTTAGG 60.119 47.826 0.00 0.00 0.00 2.69
9412 10558 3.369157 GGGTAGTCGTGCATTTCTTAGGT 60.369 47.826 0.00 0.00 0.00 3.08
9413 10559 3.864003 GGTAGTCGTGCATTTCTTAGGTC 59.136 47.826 0.00 0.00 0.00 3.85
9414 10560 2.973945 AGTCGTGCATTTCTTAGGTCC 58.026 47.619 0.00 0.00 0.00 4.46
9415 10561 2.567615 AGTCGTGCATTTCTTAGGTCCT 59.432 45.455 0.00 0.00 0.00 3.85
9416 10562 2.930682 GTCGTGCATTTCTTAGGTCCTC 59.069 50.000 0.00 0.00 0.00 3.71
9417 10563 2.832129 TCGTGCATTTCTTAGGTCCTCT 59.168 45.455 0.00 0.00 0.00 3.69
9418 10564 3.260884 TCGTGCATTTCTTAGGTCCTCTT 59.739 43.478 0.00 0.00 0.00 2.85
9419 10565 4.003648 CGTGCATTTCTTAGGTCCTCTTT 58.996 43.478 0.00 0.00 0.00 2.52
9420 10566 4.142816 CGTGCATTTCTTAGGTCCTCTTTG 60.143 45.833 0.00 0.00 0.00 2.77
9421 10567 4.762251 GTGCATTTCTTAGGTCCTCTTTGT 59.238 41.667 0.00 0.00 0.00 2.83
9422 10568 5.241728 GTGCATTTCTTAGGTCCTCTTTGTT 59.758 40.000 0.00 0.00 0.00 2.83
9423 10569 5.833131 TGCATTTCTTAGGTCCTCTTTGTTT 59.167 36.000 0.00 0.00 0.00 2.83
9424 10570 6.152379 GCATTTCTTAGGTCCTCTTTGTTTG 58.848 40.000 0.00 0.00 0.00 2.93
9425 10571 6.681777 CATTTCTTAGGTCCTCTTTGTTTGG 58.318 40.000 0.00 0.00 0.00 3.28
9426 10572 4.367039 TCTTAGGTCCTCTTTGTTTGGG 57.633 45.455 0.00 0.00 0.00 4.12
9427 10573 2.579410 TAGGTCCTCTTTGTTTGGGC 57.421 50.000 0.00 0.00 0.00 5.36
9428 10574 0.853530 AGGTCCTCTTTGTTTGGGCT 59.146 50.000 0.00 0.00 0.00 5.19
9429 10575 2.062636 AGGTCCTCTTTGTTTGGGCTA 58.937 47.619 0.00 0.00 0.00 3.93
9430 10576 2.160205 GGTCCTCTTTGTTTGGGCTAC 58.840 52.381 0.00 0.00 0.00 3.58
9431 10577 2.488347 GGTCCTCTTTGTTTGGGCTACA 60.488 50.000 0.00 0.00 0.00 2.74
9432 10578 2.814336 GTCCTCTTTGTTTGGGCTACAG 59.186 50.000 0.00 0.00 0.00 2.74
9433 10579 2.708861 TCCTCTTTGTTTGGGCTACAGA 59.291 45.455 0.00 0.00 0.00 3.41
9434 10580 3.330701 TCCTCTTTGTTTGGGCTACAGAT 59.669 43.478 0.00 0.00 0.00 2.90
9435 10581 4.082125 CCTCTTTGTTTGGGCTACAGATT 58.918 43.478 0.00 0.00 0.00 2.40
9436 10582 4.156739 CCTCTTTGTTTGGGCTACAGATTC 59.843 45.833 0.00 0.00 0.00 2.52
9437 10583 4.985538 TCTTTGTTTGGGCTACAGATTCT 58.014 39.130 0.00 0.00 0.00 2.40
9438 10584 5.385198 TCTTTGTTTGGGCTACAGATTCTT 58.615 37.500 0.00 0.00 0.00 2.52
9439 10585 5.241506 TCTTTGTTTGGGCTACAGATTCTTG 59.758 40.000 0.00 0.00 0.00 3.02
9440 10586 4.365514 TGTTTGGGCTACAGATTCTTGA 57.634 40.909 0.00 0.00 0.00 3.02
9441 10587 4.326826 TGTTTGGGCTACAGATTCTTGAG 58.673 43.478 0.00 0.00 0.00 3.02
9442 10588 4.041567 TGTTTGGGCTACAGATTCTTGAGA 59.958 41.667 0.00 0.00 0.00 3.27
9443 10589 4.908601 TTGGGCTACAGATTCTTGAGAA 57.091 40.909 0.00 0.00 38.56 2.87
9444 10590 5.441718 TTGGGCTACAGATTCTTGAGAAT 57.558 39.130 5.95 5.95 46.54 2.40
9445 10591 5.441718 TGGGCTACAGATTCTTGAGAATT 57.558 39.130 7.60 0.00 44.14 2.17
9446 10592 6.560003 TGGGCTACAGATTCTTGAGAATTA 57.440 37.500 7.60 0.00 44.14 1.40
9447 10593 6.586344 TGGGCTACAGATTCTTGAGAATTAG 58.414 40.000 7.60 7.01 44.14 1.73
9448 10594 5.994668 GGGCTACAGATTCTTGAGAATTAGG 59.005 44.000 7.60 3.96 44.14 2.69
9449 10595 5.468409 GGCTACAGATTCTTGAGAATTAGGC 59.532 44.000 15.62 15.62 44.14 3.93
9450 10596 6.287525 GCTACAGATTCTTGAGAATTAGGCT 58.712 40.000 7.60 0.00 44.14 4.58
9451 10597 6.202570 GCTACAGATTCTTGAGAATTAGGCTG 59.797 42.308 7.60 11.44 44.14 4.85
9452 10598 6.059787 ACAGATTCTTGAGAATTAGGCTGT 57.940 37.500 14.89 14.89 44.14 4.40
9453 10599 5.879223 ACAGATTCTTGAGAATTAGGCTGTG 59.121 40.000 17.79 5.63 44.14 3.66
9454 10600 5.879223 CAGATTCTTGAGAATTAGGCTGTGT 59.121 40.000 7.60 0.00 44.14 3.72
9455 10601 6.373774 CAGATTCTTGAGAATTAGGCTGTGTT 59.626 38.462 7.60 0.00 44.14 3.32
9456 10602 6.944862 AGATTCTTGAGAATTAGGCTGTGTTT 59.055 34.615 7.60 0.00 44.14 2.83
9457 10603 5.947228 TCTTGAGAATTAGGCTGTGTTTG 57.053 39.130 0.00 0.00 0.00 2.93
9458 10604 4.761739 TCTTGAGAATTAGGCTGTGTTTGG 59.238 41.667 0.00 0.00 0.00 3.28
9459 10605 2.819608 TGAGAATTAGGCTGTGTTTGGC 59.180 45.455 0.00 0.00 0.00 4.52
9460 10606 2.819608 GAGAATTAGGCTGTGTTTGGCA 59.180 45.455 0.00 0.00 0.00 4.92
9461 10607 3.230134 AGAATTAGGCTGTGTTTGGCAA 58.770 40.909 0.00 0.00 0.00 4.52
9462 10608 3.834231 AGAATTAGGCTGTGTTTGGCAAT 59.166 39.130 0.00 0.00 0.00 3.56
9463 10609 3.874392 ATTAGGCTGTGTTTGGCAATC 57.126 42.857 0.00 0.05 0.00 2.67
9464 10610 1.544724 TAGGCTGTGTTTGGCAATCC 58.455 50.000 0.00 0.00 0.00 3.01
9465 10611 0.469705 AGGCTGTGTTTGGCAATCCA 60.470 50.000 0.00 0.00 41.55 3.41
9466 10612 0.319813 GGCTGTGTTTGGCAATCCAC 60.320 55.000 18.42 18.42 43.33 4.02
9467 10613 0.319813 GCTGTGTTTGGCAATCCACC 60.320 55.000 20.92 8.65 43.33 4.61
9468 10614 0.039256 CTGTGTTTGGCAATCCACCG 60.039 55.000 20.92 14.30 43.33 4.94
9469 10615 1.372872 GTGTTTGGCAATCCACCGC 60.373 57.895 15.77 0.88 43.33 5.68
9470 10616 1.530419 TGTTTGGCAATCCACCGCT 60.530 52.632 0.00 0.00 43.33 5.52
9471 10617 1.112315 TGTTTGGCAATCCACCGCTT 61.112 50.000 0.00 0.00 43.33 4.68
9472 10618 0.388520 GTTTGGCAATCCACCGCTTC 60.389 55.000 0.00 0.00 43.33 3.86
9473 10619 0.825425 TTTGGCAATCCACCGCTTCA 60.825 50.000 0.00 0.00 43.33 3.02
9474 10620 0.611618 TTGGCAATCCACCGCTTCAT 60.612 50.000 0.00 0.00 43.33 2.57
9475 10621 1.031571 TGGCAATCCACCGCTTCATC 61.032 55.000 0.00 0.00 37.47 2.92
9476 10622 1.031571 GGCAATCCACCGCTTCATCA 61.032 55.000 0.00 0.00 0.00 3.07
9477 10623 0.099436 GCAATCCACCGCTTCATCAC 59.901 55.000 0.00 0.00 0.00 3.06
9478 10624 0.734889 CAATCCACCGCTTCATCACC 59.265 55.000 0.00 0.00 0.00 4.02
9479 10625 0.327924 AATCCACCGCTTCATCACCA 59.672 50.000 0.00 0.00 0.00 4.17
9480 10626 0.107508 ATCCACCGCTTCATCACCAG 60.108 55.000 0.00 0.00 0.00 4.00
9481 10627 1.746615 CCACCGCTTCATCACCAGG 60.747 63.158 0.00 0.00 0.00 4.45
9482 10628 1.746615 CACCGCTTCATCACCAGGG 60.747 63.158 0.00 0.00 0.00 4.45
9483 10629 1.918293 ACCGCTTCATCACCAGGGA 60.918 57.895 0.00 0.00 0.00 4.20
9484 10630 1.153289 CCGCTTCATCACCAGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
9485 10631 1.817099 CGCTTCATCACCAGGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
9486 10632 1.817099 GCTTCATCACCAGGGAGCG 60.817 63.158 0.00 0.00 0.00 5.03
9487 10633 1.153289 CTTCATCACCAGGGAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
9488 10634 1.612146 TTCATCACCAGGGAGCGGA 60.612 57.895 0.00 0.00 0.00 5.54
9489 10635 1.617018 TTCATCACCAGGGAGCGGAG 61.617 60.000 0.00 0.00 0.00 4.63
9511 10657 3.425422 CGGAGCAGCCTATTTGCC 58.575 61.111 0.00 0.00 42.48 4.52
9512 10658 2.537560 CGGAGCAGCCTATTTGCCG 61.538 63.158 0.00 0.00 42.48 5.69
9513 10659 2.718107 GAGCAGCCTATTTGCCGC 59.282 61.111 0.00 0.00 42.48 6.53
9514 10660 2.273449 AGCAGCCTATTTGCCGCT 59.727 55.556 0.00 0.00 42.48 5.52
9515 10661 1.821332 AGCAGCCTATTTGCCGCTC 60.821 57.895 0.00 0.00 40.94 5.03
9516 10662 1.821332 GCAGCCTATTTGCCGCTCT 60.821 57.895 0.00 0.00 35.54 4.09
9517 10663 1.780025 GCAGCCTATTTGCCGCTCTC 61.780 60.000 0.00 0.00 35.54 3.20
9518 10664 1.147153 AGCCTATTTGCCGCTCTCC 59.853 57.895 0.00 0.00 0.00 3.71
9519 10665 2.247437 GCCTATTTGCCGCTCTCCG 61.247 63.158 0.00 0.00 0.00 4.63
9520 10666 1.144057 CCTATTTGCCGCTCTCCGT 59.856 57.895 0.00 0.00 34.38 4.69
9521 10667 0.387929 CCTATTTGCCGCTCTCCGTA 59.612 55.000 0.00 0.00 34.38 4.02
9522 10668 1.000955 CCTATTTGCCGCTCTCCGTAT 59.999 52.381 0.00 0.00 34.38 3.06
9523 10669 2.548067 CCTATTTGCCGCTCTCCGTATT 60.548 50.000 0.00 0.00 34.38 1.89
9524 10670 2.038387 ATTTGCCGCTCTCCGTATTT 57.962 45.000 0.00 0.00 34.38 1.40
9525 10671 1.365699 TTTGCCGCTCTCCGTATTTC 58.634 50.000 0.00 0.00 34.38 2.17
9526 10672 0.535335 TTGCCGCTCTCCGTATTTCT 59.465 50.000 0.00 0.00 34.38 2.52
9527 10673 1.395635 TGCCGCTCTCCGTATTTCTA 58.604 50.000 0.00 0.00 34.38 2.10
9528 10674 1.961394 TGCCGCTCTCCGTATTTCTAT 59.039 47.619 0.00 0.00 34.38 1.98
9529 10675 2.364324 TGCCGCTCTCCGTATTTCTATT 59.636 45.455 0.00 0.00 34.38 1.73
9530 10676 2.731976 GCCGCTCTCCGTATTTCTATTG 59.268 50.000 0.00 0.00 34.38 1.90
9531 10677 3.799232 GCCGCTCTCCGTATTTCTATTGT 60.799 47.826 0.00 0.00 34.38 2.71
9532 10678 4.558095 GCCGCTCTCCGTATTTCTATTGTA 60.558 45.833 0.00 0.00 34.38 2.41
9533 10679 5.710984 CCGCTCTCCGTATTTCTATTGTAT 58.289 41.667 0.00 0.00 34.38 2.29
9534 10680 5.573282 CCGCTCTCCGTATTTCTATTGTATG 59.427 44.000 0.00 0.00 34.38 2.39
9535 10681 5.061064 CGCTCTCCGTATTTCTATTGTATGC 59.939 44.000 0.00 0.00 0.00 3.14
9536 10682 5.348997 GCTCTCCGTATTTCTATTGTATGCC 59.651 44.000 0.00 0.00 0.00 4.40
9537 10683 5.466819 TCTCCGTATTTCTATTGTATGCCG 58.533 41.667 0.00 0.00 0.00 5.69
9538 10684 3.991773 TCCGTATTTCTATTGTATGCCGC 59.008 43.478 0.00 0.00 0.00 6.53
9539 10685 3.994392 CCGTATTTCTATTGTATGCCGCT 59.006 43.478 0.00 0.00 0.00 5.52
9540 10686 4.091509 CCGTATTTCTATTGTATGCCGCTC 59.908 45.833 0.00 0.00 0.00 5.03
9541 10687 4.091509 CGTATTTCTATTGTATGCCGCTCC 59.908 45.833 0.00 0.00 0.00 4.70
9542 10688 2.148916 TTCTATTGTATGCCGCTCCG 57.851 50.000 0.00 0.00 0.00 4.63
9543 10689 0.319555 TCTATTGTATGCCGCTCCGC 60.320 55.000 0.00 0.00 0.00 5.54
9544 10690 0.319900 CTATTGTATGCCGCTCCGCT 60.320 55.000 0.00 0.00 0.00 5.52
9545 10691 0.319555 TATTGTATGCCGCTCCGCTC 60.320 55.000 0.00 0.00 0.00 5.03
9546 10692 2.996168 ATTGTATGCCGCTCCGCTCC 62.996 60.000 0.00 0.00 0.00 4.70
9566 10712 4.867599 GGCGGAGTTACGGAGCGG 62.868 72.222 0.00 0.00 0.00 5.52
9567 10713 3.818787 GCGGAGTTACGGAGCGGA 61.819 66.667 0.00 0.00 0.00 5.54
9568 10714 2.408022 CGGAGTTACGGAGCGGAG 59.592 66.667 0.00 0.00 0.00 4.63
9569 10715 2.806237 GGAGTTACGGAGCGGAGG 59.194 66.667 0.00 0.00 0.00 4.30
9570 10716 2.783288 GGAGTTACGGAGCGGAGGG 61.783 68.421 0.00 0.00 0.00 4.30
9571 10717 1.751927 GAGTTACGGAGCGGAGGGA 60.752 63.158 0.00 0.00 0.00 4.20
9572 10718 1.076192 AGTTACGGAGCGGAGGGAT 60.076 57.895 0.00 0.00 0.00 3.85
9573 10719 0.686769 AGTTACGGAGCGGAGGGATT 60.687 55.000 0.00 0.00 0.00 3.01
9574 10720 0.249363 GTTACGGAGCGGAGGGATTC 60.249 60.000 0.00 0.00 0.00 2.52
9575 10721 1.397390 TTACGGAGCGGAGGGATTCC 61.397 60.000 0.00 0.00 43.04 3.01
9584 10730 0.179070 GGAGGGATTCCGAACAGAGC 60.179 60.000 0.00 0.00 35.91 4.09
9585 10731 0.179070 GAGGGATTCCGAACAGAGCC 60.179 60.000 0.00 0.00 38.33 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.049674 CACGCCCTCGCACAATGT 61.050 61.111 0.00 0.00 39.84 2.71
80 81 0.726827 TTGCGGATGACAATCTTCGC 59.273 50.000 0.00 0.00 41.24 4.70
83 84 1.004745 ACCCTTGCGGATGACAATCTT 59.995 47.619 0.00 0.00 34.64 2.40
90 91 0.605319 GTTCACACCCTTGCGGATGA 60.605 55.000 0.00 0.00 34.64 2.92
128 129 1.411246 AGATAACATAGGCACGCGGAA 59.589 47.619 12.47 0.00 0.00 4.30
140 141 2.633481 GGGCTCGGGTAAGAGATAACAT 59.367 50.000 0.00 0.00 40.57 2.71
141 142 2.037144 GGGCTCGGGTAAGAGATAACA 58.963 52.381 0.00 0.00 40.57 2.41
267 268 7.597288 AAAACCTAAAACAATTAGGCTCACT 57.403 32.000 12.93 0.00 44.13 3.41
292 293 8.865590 AAACTAACGTTTAATTTGTCAAGCAT 57.134 26.923 5.91 0.00 41.36 3.79
359 360 1.204146 GAGGGCTGGTGAATAGTCCA 58.796 55.000 0.00 0.00 42.43 4.02
368 369 4.641645 TTGCGTGGAGGGCTGGTG 62.642 66.667 0.00 0.00 0.00 4.17
449 450 3.071874 TCTTCAATCTTCCGGCATGTT 57.928 42.857 0.00 0.00 0.00 2.71
454 455 1.221414 CCGATCTTCAATCTTCCGGC 58.779 55.000 0.00 0.00 0.00 6.13
458 459 2.875317 GGAAGCCCGATCTTCAATCTTC 59.125 50.000 15.22 0.00 43.14 2.87
478 479 0.251916 TTCACGAAGCTGGGTATGGG 59.748 55.000 0.00 0.00 0.00 4.00
479 480 1.207089 TCTTCACGAAGCTGGGTATGG 59.793 52.381 1.75 0.00 38.28 2.74
507 508 6.365247 CACAAGTAGTAACTACGTTGATGCTT 59.635 38.462 3.44 0.00 41.37 3.91
522 523 5.244189 AGGAGACTGTCTCACAAGTAGTA 57.756 43.478 32.16 0.00 45.12 1.82
523 524 4.107127 AGGAGACTGTCTCACAAGTAGT 57.893 45.455 32.16 8.99 45.12 2.73
524 525 5.461032 AAAGGAGACTGTCTCACAAGTAG 57.539 43.478 32.16 0.00 45.12 2.57
531 532 5.336531 GGTCGAATAAAAGGAGACTGTCTCA 60.337 44.000 32.16 16.53 45.12 3.27
625 1304 1.713597 TGATAGAGCACTTGTGCACG 58.286 50.000 24.82 0.65 37.25 5.34
836 1534 3.412408 GCCTGGGAGGGGAGGAAC 61.412 72.222 0.00 0.00 35.37 3.62
852 1550 4.529731 GGGGATTCTGGCCTGGGC 62.530 72.222 14.23 14.23 41.06 5.36
888 1591 1.064357 TGGGTTTCGAACGTTTTGCTC 59.936 47.619 0.46 0.00 0.00 4.26
1106 1825 4.891727 CATCCCCGCCGTCGAAGG 62.892 72.222 13.59 13.59 38.10 3.46
1491 2210 2.846193 TGTGTACCAAGAGAAAGGTGC 58.154 47.619 0.00 0.00 40.42 5.01
1689 2423 3.103911 CGCTCGTTCGTGGTGGTC 61.104 66.667 0.00 0.00 0.00 4.02
1707 2441 1.959282 CAAGGCAAAGGAAACAGAGCT 59.041 47.619 0.00 0.00 0.00 4.09
1723 2458 7.637229 CATGAGTTAAGCTATTCATCACAAGG 58.363 38.462 0.00 0.00 0.00 3.61
1740 2478 5.863397 GCAAACAAATAAGCTGCATGAGTTA 59.137 36.000 1.02 0.00 33.19 2.24
1810 2563 9.226345 GTGAAGTCTTGATTCTACAACAAAAAG 57.774 33.333 0.00 0.00 0.00 2.27
1876 2637 4.261614 CGCAGATAACTCAGGTGCATACTA 60.262 45.833 0.00 0.00 33.59 1.82
1886 2647 2.544685 CTTGGGACGCAGATAACTCAG 58.455 52.381 0.00 0.00 0.00 3.35
1902 2663 2.089980 CAAAGAGACCATCCTGCTTGG 58.910 52.381 0.00 0.00 40.26 3.61
2031 2793 9.121658 ACAATGTTCTTCAGACGTATCTATAGA 57.878 33.333 4.57 4.57 32.25 1.98
2067 2829 1.303309 CTCGAGTTCAATGGATGGCC 58.697 55.000 3.62 0.00 0.00 5.36
2126 2888 5.918576 GGTTCAATACTGCACTTTTGGTTAC 59.081 40.000 0.00 0.00 0.00 2.50
2137 2899 6.953101 TCAAATAGGTAGGTTCAATACTGCA 58.047 36.000 0.00 0.00 0.00 4.41
2244 3016 9.372369 ACTATACAGATCAAAGAAAAGCAGTAC 57.628 33.333 0.00 0.00 0.00 2.73
2376 3148 9.923143 GAACTTACCCAGTTTAAATAAGCATTT 57.077 29.630 5.73 0.00 46.53 2.32
2624 3402 7.041644 TGGGTAAAACGTTTCAAGAATCTAGTG 60.042 37.037 15.01 0.00 0.00 2.74
2640 3418 6.737254 ACTGATGTAGAAATGGGTAAAACG 57.263 37.500 0.00 0.00 0.00 3.60
2661 3439 8.691661 ACTTTCAACAATGTTAACCATCTACT 57.308 30.769 2.48 0.00 31.75 2.57
2815 3594 8.089597 TGAGTAACAAGATGGAATACGTGTAAA 58.910 33.333 0.00 0.00 0.00 2.01
2834 3613 5.339990 ACAAAACATGCACTTGTGAGTAAC 58.660 37.500 4.79 0.00 33.90 2.50
3101 3880 9.561069 AGAAAGAAAGCAAATACTTCTACAAGA 57.439 29.630 0.00 0.00 33.34 3.02
3230 4010 8.919145 ACATTTTATAGACTTGAGAGGGAGTAG 58.081 37.037 0.00 0.00 0.00 2.57
3453 4237 7.039882 ACCGAATACACGATTCTGAATTTAGT 58.960 34.615 4.11 6.15 41.72 2.24
3681 4465 1.632409 TCTGGCCTTGATGCTCTCTTT 59.368 47.619 3.32 0.00 0.00 2.52
3941 4733 9.826574 AAATAAGTTACTACGCATAATTCTGGA 57.173 29.630 0.00 0.00 0.00 3.86
4209 5037 3.811497 TCTTCAGCATTGTGACAGAACAG 59.189 43.478 0.00 0.00 0.00 3.16
4444 5272 4.274459 GTCTCCATGACATGAAACCTATGC 59.726 45.833 17.24 0.00 44.73 3.14
4517 5345 4.545208 AAACTCTAAGAGAGGCTTGTCC 57.455 45.455 10.26 0.00 46.45 4.02
4518 5346 6.588373 CACTTAAACTCTAAGAGAGGCTTGTC 59.412 42.308 10.26 0.00 46.45 3.18
4519 5347 6.267928 TCACTTAAACTCTAAGAGAGGCTTGT 59.732 38.462 10.26 0.27 46.45 3.16
4520 5348 6.692486 TCACTTAAACTCTAAGAGAGGCTTG 58.308 40.000 10.26 0.00 46.45 4.01
4521 5349 6.919775 TCACTTAAACTCTAAGAGAGGCTT 57.080 37.500 10.26 5.60 46.45 4.35
4522 5350 6.919775 TTCACTTAAACTCTAAGAGAGGCT 57.080 37.500 10.26 0.00 46.45 4.58
4523 5351 7.819900 TCAATTCACTTAAACTCTAAGAGAGGC 59.180 37.037 10.26 0.00 46.45 4.70
4524 5352 9.712305 TTCAATTCACTTAAACTCTAAGAGAGG 57.288 33.333 10.26 0.00 46.45 3.69
4528 5356 7.936847 TGGCTTCAATTCACTTAAACTCTAAGA 59.063 33.333 0.00 0.00 0.00 2.10
4556 5384 3.013921 ACACAAACCAGAAACACGACAT 58.986 40.909 0.00 0.00 0.00 3.06
4593 5421 2.691409 AATGGTGTACACATCGGAGG 57.309 50.000 26.51 0.00 0.00 4.30
5505 6372 6.979465 TGAACATTTGTGCACATGAGAATTA 58.021 32.000 23.70 3.52 0.00 1.40
5721 6642 4.122776 GTGATAGGCCAACATCACTAGTG 58.877 47.826 26.02 17.17 44.94 2.74
6562 7495 6.258160 CACCACAAACTGAACTCTAAACTTG 58.742 40.000 0.00 0.00 0.00 3.16
7171 8104 7.010091 CCACCAACTGTTCAAAAGTTTCAATAC 59.990 37.037 0.00 0.00 35.70 1.89
7569 8503 4.141251 TGGAAAGGAAGAAAGTAACAGGCT 60.141 41.667 0.00 0.00 0.00 4.58
7607 8541 0.179468 AGCACAACAGTAACACGGGT 59.821 50.000 0.00 0.00 0.00 5.28
7610 8544 2.599848 GCTGAAGCACAACAGTAACACG 60.600 50.000 0.00 0.00 41.59 4.49
7622 8556 2.079925 CCAAGGAACTAGCTGAAGCAC 58.920 52.381 4.90 0.00 40.93 4.40
7691 8625 3.624777 CCTACAGCCAGGTCATGAAATT 58.375 45.455 0.00 0.00 0.00 1.82
7744 8678 2.857152 CTCTGCGCATTCTTAGACAGAC 59.143 50.000 12.24 0.00 31.32 3.51
8233 9375 4.468510 ACTCACCGTAATGGAAGTATGGAA 59.531 41.667 0.28 0.00 46.10 3.53
8234 9376 4.028131 ACTCACCGTAATGGAAGTATGGA 58.972 43.478 0.28 0.00 46.10 3.41
8236 9378 5.416083 TCAACTCACCGTAATGGAAGTATG 58.584 41.667 0.00 0.00 42.00 2.39
8237 9379 5.670792 TCAACTCACCGTAATGGAAGTAT 57.329 39.130 0.00 0.00 42.00 2.12
8238 9380 5.670792 ATCAACTCACCGTAATGGAAGTA 57.329 39.130 0.00 0.00 42.00 2.24
8239 9381 4.553330 ATCAACTCACCGTAATGGAAGT 57.447 40.909 0.00 0.00 42.00 3.01
8240 9382 4.437390 GCAATCAACTCACCGTAATGGAAG 60.437 45.833 0.00 0.00 42.00 3.46
8459 9601 6.493458 ACATAGCACAAGAAGGGTAAAATGTT 59.507 34.615 0.00 0.00 0.00 2.71
8479 9621 3.242220 CGCAGCAGCAAGTAGAAACATAG 60.242 47.826 0.82 0.00 42.27 2.23
8611 9753 8.415553 CCATCCTATCATAGTTTGCATTTTTCA 58.584 33.333 0.00 0.00 0.00 2.69
8714 9856 4.166888 AGGTCATCTGCGGCGCAT 62.167 61.111 36.35 19.74 38.13 4.73
8763 9905 7.254898 GCCAAAGGAAAAGAAAAGAAAGAATGG 60.255 37.037 0.00 0.00 0.00 3.16
8995 10138 2.141122 AAACCAAACGGCATGGCGAG 62.141 55.000 43.12 30.14 41.89 5.03
9052 10198 3.495434 TCCGGTGTTTGGAACAGTATT 57.505 42.857 0.00 0.00 43.10 1.89
9069 10215 3.732212 TCCATCTGCTGAATGTAATCCG 58.268 45.455 0.00 0.00 0.00 4.18
9101 10247 8.087136 TGCATAATTGACTAGCAACAATTTTGA 58.913 29.630 25.48 16.43 42.28 2.69
9226 10372 3.369756 TCGTTTAATTTGAGCGGTGCTAG 59.630 43.478 0.00 0.00 39.88 3.42
9232 10378 7.792508 GTCACTATATTCGTTTAATTTGAGCGG 59.207 37.037 0.00 0.00 0.00 5.52
9291 10437 2.708861 TCTGTAGCCCAAACAAAGAGGA 59.291 45.455 0.00 0.00 0.00 3.71
9323 10469 1.892474 GGATTGCCAAACACAGCCTAA 59.108 47.619 0.00 0.00 0.00 2.69
9324 10470 1.202989 TGGATTGCCAAACACAGCCTA 60.203 47.619 0.00 0.00 42.49 3.93
9325 10471 0.469705 TGGATTGCCAAACACAGCCT 60.470 50.000 0.00 0.00 42.49 4.58
9326 10472 2.048601 TGGATTGCCAAACACAGCC 58.951 52.632 0.00 0.00 42.49 4.85
9335 10481 1.001020 ATGAAGCGGTGGATTGCCA 60.001 52.632 0.00 0.00 43.47 4.92
9336 10482 1.031571 TGATGAAGCGGTGGATTGCC 61.032 55.000 0.00 0.00 0.00 4.52
9337 10483 0.099436 GTGATGAAGCGGTGGATTGC 59.901 55.000 0.00 0.00 0.00 3.56
9338 10484 0.734889 GGTGATGAAGCGGTGGATTG 59.265 55.000 0.00 0.00 0.00 2.67
9339 10485 0.327924 TGGTGATGAAGCGGTGGATT 59.672 50.000 0.00 0.00 0.00 3.01
9340 10486 0.107508 CTGGTGATGAAGCGGTGGAT 60.108 55.000 0.00 0.00 0.00 3.41
9341 10487 1.296392 CTGGTGATGAAGCGGTGGA 59.704 57.895 0.00 0.00 0.00 4.02
9342 10488 1.746615 CCTGGTGATGAAGCGGTGG 60.747 63.158 0.00 0.00 0.00 4.61
9343 10489 1.746615 CCCTGGTGATGAAGCGGTG 60.747 63.158 0.00 0.00 0.00 4.94
9344 10490 1.903877 CTCCCTGGTGATGAAGCGGT 61.904 60.000 0.00 0.00 0.00 5.68
9345 10491 1.153289 CTCCCTGGTGATGAAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
9346 10492 1.817099 GCTCCCTGGTGATGAAGCG 60.817 63.158 0.00 0.00 0.00 4.68
9347 10493 1.817099 CGCTCCCTGGTGATGAAGC 60.817 63.158 0.00 0.00 0.00 3.86
9348 10494 1.153289 CCGCTCCCTGGTGATGAAG 60.153 63.158 0.00 0.00 0.00 3.02
9349 10495 1.612146 TCCGCTCCCTGGTGATGAA 60.612 57.895 0.00 0.00 0.00 2.57
9350 10496 2.038813 TCCGCTCCCTGGTGATGA 59.961 61.111 0.00 0.00 0.00 2.92
9351 10497 2.503061 CTCCGCTCCCTGGTGATG 59.497 66.667 0.00 0.00 0.00 3.07
9352 10498 3.474570 GCTCCGCTCCCTGGTGAT 61.475 66.667 0.00 0.00 0.00 3.06
9371 10517 2.518836 CTTTTCAAGGCTGCTCCGCG 62.519 60.000 0.00 0.00 40.77 6.46
9372 10518 1.211190 CTTTTCAAGGCTGCTCCGC 59.789 57.895 0.00 0.00 40.77 5.54
9373 10519 1.878775 CCTTTTCAAGGCTGCTCCG 59.121 57.895 0.00 0.00 42.78 4.63
9382 10528 2.489971 TGCACGACTACCCTTTTCAAG 58.510 47.619 0.00 0.00 0.00 3.02
9383 10529 2.623878 TGCACGACTACCCTTTTCAA 57.376 45.000 0.00 0.00 0.00 2.69
9384 10530 2.851263 ATGCACGACTACCCTTTTCA 57.149 45.000 0.00 0.00 0.00 2.69
9385 10531 3.751698 AGAAATGCACGACTACCCTTTTC 59.248 43.478 0.00 0.00 0.00 2.29
9386 10532 3.751518 AGAAATGCACGACTACCCTTTT 58.248 40.909 0.00 0.00 0.00 2.27
9387 10533 3.418684 AGAAATGCACGACTACCCTTT 57.581 42.857 0.00 0.00 0.00 3.11
9388 10534 3.418684 AAGAAATGCACGACTACCCTT 57.581 42.857 0.00 0.00 0.00 3.95
9389 10535 3.118738 CCTAAGAAATGCACGACTACCCT 60.119 47.826 0.00 0.00 0.00 4.34
9390 10536 3.195661 CCTAAGAAATGCACGACTACCC 58.804 50.000 0.00 0.00 0.00 3.69
9391 10537 3.858247 ACCTAAGAAATGCACGACTACC 58.142 45.455 0.00 0.00 0.00 3.18
9392 10538 3.864003 GGACCTAAGAAATGCACGACTAC 59.136 47.826 0.00 0.00 0.00 2.73
9393 10539 3.767673 AGGACCTAAGAAATGCACGACTA 59.232 43.478 0.00 0.00 0.00 2.59
9394 10540 2.567615 AGGACCTAAGAAATGCACGACT 59.432 45.455 0.00 0.00 0.00 4.18
9395 10541 2.930682 GAGGACCTAAGAAATGCACGAC 59.069 50.000 0.00 0.00 0.00 4.34
9396 10542 2.832129 AGAGGACCTAAGAAATGCACGA 59.168 45.455 0.00 0.00 0.00 4.35
9397 10543 3.252974 AGAGGACCTAAGAAATGCACG 57.747 47.619 0.00 0.00 0.00 5.34
9398 10544 4.762251 ACAAAGAGGACCTAAGAAATGCAC 59.238 41.667 0.00 0.00 0.00 4.57
9399 10545 4.985538 ACAAAGAGGACCTAAGAAATGCA 58.014 39.130 0.00 0.00 0.00 3.96
9400 10546 5.966742 AACAAAGAGGACCTAAGAAATGC 57.033 39.130 0.00 0.00 0.00 3.56
9401 10547 6.294731 CCCAAACAAAGAGGACCTAAGAAATG 60.295 42.308 0.00 0.00 0.00 2.32
9402 10548 5.775195 CCCAAACAAAGAGGACCTAAGAAAT 59.225 40.000 0.00 0.00 0.00 2.17
9403 10549 5.137551 CCCAAACAAAGAGGACCTAAGAAA 58.862 41.667 0.00 0.00 0.00 2.52
9404 10550 4.725490 CCCAAACAAAGAGGACCTAAGAA 58.275 43.478 0.00 0.00 0.00 2.52
9405 10551 3.497942 GCCCAAACAAAGAGGACCTAAGA 60.498 47.826 0.00 0.00 0.00 2.10
9406 10552 2.820197 GCCCAAACAAAGAGGACCTAAG 59.180 50.000 0.00 0.00 0.00 2.18
9407 10553 2.445525 AGCCCAAACAAAGAGGACCTAA 59.554 45.455 0.00 0.00 0.00 2.69
9408 10554 2.062636 AGCCCAAACAAAGAGGACCTA 58.937 47.619 0.00 0.00 0.00 3.08
9409 10555 0.853530 AGCCCAAACAAAGAGGACCT 59.146 50.000 0.00 0.00 0.00 3.85
9410 10556 2.160205 GTAGCCCAAACAAAGAGGACC 58.840 52.381 0.00 0.00 0.00 4.46
9411 10557 2.814336 CTGTAGCCCAAACAAAGAGGAC 59.186 50.000 0.00 0.00 0.00 3.85
9412 10558 2.708861 TCTGTAGCCCAAACAAAGAGGA 59.291 45.455 0.00 0.00 0.00 3.71
9413 10559 3.140325 TCTGTAGCCCAAACAAAGAGG 57.860 47.619 0.00 0.00 0.00 3.69
9414 10560 5.006386 AGAATCTGTAGCCCAAACAAAGAG 58.994 41.667 0.00 0.00 0.00 2.85
9415 10561 4.985538 AGAATCTGTAGCCCAAACAAAGA 58.014 39.130 0.00 0.00 0.00 2.52
9416 10562 5.241506 TCAAGAATCTGTAGCCCAAACAAAG 59.758 40.000 0.00 0.00 0.00 2.77
9417 10563 5.136828 TCAAGAATCTGTAGCCCAAACAAA 58.863 37.500 0.00 0.00 0.00 2.83
9418 10564 4.724399 TCAAGAATCTGTAGCCCAAACAA 58.276 39.130 0.00 0.00 0.00 2.83
9419 10565 4.041567 TCTCAAGAATCTGTAGCCCAAACA 59.958 41.667 0.00 0.00 0.00 2.83
9420 10566 4.579869 TCTCAAGAATCTGTAGCCCAAAC 58.420 43.478 0.00 0.00 0.00 2.93
9421 10567 4.908601 TCTCAAGAATCTGTAGCCCAAA 57.091 40.909 0.00 0.00 0.00 3.28
9422 10568 4.908601 TTCTCAAGAATCTGTAGCCCAA 57.091 40.909 0.00 0.00 0.00 4.12
9423 10569 5.441718 AATTCTCAAGAATCTGTAGCCCA 57.558 39.130 5.75 0.00 43.41 5.36
9424 10570 5.994668 CCTAATTCTCAAGAATCTGTAGCCC 59.005 44.000 5.75 0.00 43.41 5.19
9425 10571 5.468409 GCCTAATTCTCAAGAATCTGTAGCC 59.532 44.000 5.75 0.00 43.41 3.93
9426 10572 6.202570 CAGCCTAATTCTCAAGAATCTGTAGC 59.797 42.308 5.75 5.69 43.41 3.58
9427 10573 7.224362 CACAGCCTAATTCTCAAGAATCTGTAG 59.776 40.741 17.51 11.16 43.41 2.74
9428 10574 7.044181 CACAGCCTAATTCTCAAGAATCTGTA 58.956 38.462 17.51 4.44 43.41 2.74
9429 10575 5.879223 CACAGCCTAATTCTCAAGAATCTGT 59.121 40.000 14.39 14.39 43.41 3.41
9430 10576 5.879223 ACACAGCCTAATTCTCAAGAATCTG 59.121 40.000 13.50 13.50 43.41 2.90
9431 10577 6.059787 ACACAGCCTAATTCTCAAGAATCT 57.940 37.500 5.75 0.00 43.41 2.40
9432 10578 6.749923 AACACAGCCTAATTCTCAAGAATC 57.250 37.500 5.75 0.00 43.41 2.52
9433 10579 6.071728 CCAAACACAGCCTAATTCTCAAGAAT 60.072 38.462 0.00 0.00 45.91 2.40
9434 10580 5.241506 CCAAACACAGCCTAATTCTCAAGAA 59.758 40.000 0.00 0.00 38.56 2.52
9435 10581 4.761739 CCAAACACAGCCTAATTCTCAAGA 59.238 41.667 0.00 0.00 0.00 3.02
9436 10582 4.616835 GCCAAACACAGCCTAATTCTCAAG 60.617 45.833 0.00 0.00 0.00 3.02
9437 10583 3.255642 GCCAAACACAGCCTAATTCTCAA 59.744 43.478 0.00 0.00 0.00 3.02
9438 10584 2.819608 GCCAAACACAGCCTAATTCTCA 59.180 45.455 0.00 0.00 0.00 3.27
9439 10585 2.819608 TGCCAAACACAGCCTAATTCTC 59.180 45.455 0.00 0.00 0.00 2.87
9440 10586 2.875296 TGCCAAACACAGCCTAATTCT 58.125 42.857 0.00 0.00 0.00 2.40
9441 10587 3.658757 TTGCCAAACACAGCCTAATTC 57.341 42.857 0.00 0.00 0.00 2.17
9442 10588 3.055891 GGATTGCCAAACACAGCCTAATT 60.056 43.478 0.00 0.00 0.00 1.40
9443 10589 2.497273 GGATTGCCAAACACAGCCTAAT 59.503 45.455 0.00 0.00 0.00 1.73
9444 10590 1.892474 GGATTGCCAAACACAGCCTAA 59.108 47.619 0.00 0.00 0.00 2.69
9445 10591 1.202989 TGGATTGCCAAACACAGCCTA 60.203 47.619 0.00 0.00 42.49 3.93
9446 10592 0.469705 TGGATTGCCAAACACAGCCT 60.470 50.000 0.00 0.00 42.49 4.58
9447 10593 2.048601 TGGATTGCCAAACACAGCC 58.951 52.632 0.00 0.00 42.49 4.85
9456 10602 1.001020 ATGAAGCGGTGGATTGCCA 60.001 52.632 0.00 0.00 43.47 4.92
9457 10603 1.031571 TGATGAAGCGGTGGATTGCC 61.032 55.000 0.00 0.00 0.00 4.52
9458 10604 0.099436 GTGATGAAGCGGTGGATTGC 59.901 55.000 0.00 0.00 0.00 3.56
9459 10605 0.734889 GGTGATGAAGCGGTGGATTG 59.265 55.000 0.00 0.00 0.00 2.67
9460 10606 0.327924 TGGTGATGAAGCGGTGGATT 59.672 50.000 0.00 0.00 0.00 3.01
9461 10607 0.107508 CTGGTGATGAAGCGGTGGAT 60.108 55.000 0.00 0.00 0.00 3.41
9462 10608 1.296392 CTGGTGATGAAGCGGTGGA 59.704 57.895 0.00 0.00 0.00 4.02
9463 10609 1.746615 CCTGGTGATGAAGCGGTGG 60.747 63.158 0.00 0.00 0.00 4.61
9464 10610 1.746615 CCCTGGTGATGAAGCGGTG 60.747 63.158 0.00 0.00 0.00 4.94
9465 10611 1.903877 CTCCCTGGTGATGAAGCGGT 61.904 60.000 0.00 0.00 0.00 5.68
9466 10612 1.153289 CTCCCTGGTGATGAAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
9467 10613 1.817099 GCTCCCTGGTGATGAAGCG 60.817 63.158 0.00 0.00 0.00 4.68
9468 10614 1.817099 CGCTCCCTGGTGATGAAGC 60.817 63.158 0.00 0.00 0.00 3.86
9469 10615 1.153289 CCGCTCCCTGGTGATGAAG 60.153 63.158 0.00 0.00 0.00 3.02
9470 10616 1.612146 TCCGCTCCCTGGTGATGAA 60.612 57.895 0.00 0.00 0.00 2.57
9471 10617 2.038813 TCCGCTCCCTGGTGATGA 59.961 61.111 0.00 0.00 0.00 2.92
9472 10618 2.503061 CTCCGCTCCCTGGTGATG 59.497 66.667 0.00 0.00 0.00 3.07
9473 10619 3.474570 GCTCCGCTCCCTGGTGAT 61.475 66.667 0.00 0.00 0.00 3.06
9491 10637 2.897350 AAATAGGCTGCTCCGCGC 60.897 61.111 0.00 0.00 40.77 6.86
9492 10638 3.017323 CAAATAGGCTGCTCCGCG 58.983 61.111 0.00 0.00 40.77 6.46
9493 10639 2.718107 GCAAATAGGCTGCTCCGC 59.282 61.111 0.00 0.00 40.77 5.54
9494 10640 2.537560 CGGCAAATAGGCTGCTCCG 61.538 63.158 0.00 0.00 39.82 4.63
9495 10641 3.425422 CGGCAAATAGGCTGCTCC 58.575 61.111 0.00 0.00 39.82 4.70
9499 10645 1.162800 GGAGAGCGGCAAATAGGCTG 61.163 60.000 1.45 0.00 43.14 4.85
9500 10646 1.147153 GGAGAGCGGCAAATAGGCT 59.853 57.895 1.45 0.00 41.46 4.58
9501 10647 2.247437 CGGAGAGCGGCAAATAGGC 61.247 63.158 1.45 0.00 39.93 3.93
9502 10648 0.387929 TACGGAGAGCGGCAAATAGG 59.612 55.000 1.45 0.00 0.00 2.57
9503 10649 2.440539 ATACGGAGAGCGGCAAATAG 57.559 50.000 1.45 0.00 0.00 1.73
9504 10650 2.902705 AATACGGAGAGCGGCAAATA 57.097 45.000 1.45 0.00 0.00 1.40
9505 10651 1.940613 GAAATACGGAGAGCGGCAAAT 59.059 47.619 1.45 0.00 0.00 2.32
9506 10652 1.066430 AGAAATACGGAGAGCGGCAAA 60.066 47.619 1.45 0.00 0.00 3.68
9507 10653 0.535335 AGAAATACGGAGAGCGGCAA 59.465 50.000 1.45 0.00 0.00 4.52
9508 10654 1.395635 TAGAAATACGGAGAGCGGCA 58.604 50.000 1.45 0.00 0.00 5.69
9509 10655 2.726832 ATAGAAATACGGAGAGCGGC 57.273 50.000 0.00 0.00 0.00 6.53
9510 10656 3.978687 ACAATAGAAATACGGAGAGCGG 58.021 45.455 0.00 0.00 0.00 5.52
9511 10657 5.061064 GCATACAATAGAAATACGGAGAGCG 59.939 44.000 0.00 0.00 0.00 5.03
9512 10658 5.348997 GGCATACAATAGAAATACGGAGAGC 59.651 44.000 0.00 0.00 0.00 4.09
9513 10659 5.573282 CGGCATACAATAGAAATACGGAGAG 59.427 44.000 0.00 0.00 0.00 3.20
9514 10660 5.466819 CGGCATACAATAGAAATACGGAGA 58.533 41.667 0.00 0.00 0.00 3.71
9515 10661 4.091509 GCGGCATACAATAGAAATACGGAG 59.908 45.833 0.00 0.00 0.00 4.63
9516 10662 3.991773 GCGGCATACAATAGAAATACGGA 59.008 43.478 0.00 0.00 0.00 4.69
9517 10663 3.994392 AGCGGCATACAATAGAAATACGG 59.006 43.478 1.45 0.00 0.00 4.02
9518 10664 4.091509 GGAGCGGCATACAATAGAAATACG 59.908 45.833 1.45 0.00 0.00 3.06
9519 10665 4.091509 CGGAGCGGCATACAATAGAAATAC 59.908 45.833 1.45 0.00 0.00 1.89
9520 10666 4.242475 CGGAGCGGCATACAATAGAAATA 58.758 43.478 1.45 0.00 0.00 1.40
9521 10667 3.067106 CGGAGCGGCATACAATAGAAAT 58.933 45.455 1.45 0.00 0.00 2.17
9522 10668 2.479837 CGGAGCGGCATACAATAGAAA 58.520 47.619 1.45 0.00 0.00 2.52
9523 10669 2.148916 CGGAGCGGCATACAATAGAA 57.851 50.000 1.45 0.00 0.00 2.10
9524 10670 3.886044 CGGAGCGGCATACAATAGA 57.114 52.632 1.45 0.00 0.00 1.98
9549 10695 4.867599 CCGCTCCGTAACTCCGCC 62.868 72.222 0.00 0.00 0.00 6.13
9550 10696 3.753070 CTCCGCTCCGTAACTCCGC 62.753 68.421 0.00 0.00 0.00 5.54
9551 10697 2.408022 CTCCGCTCCGTAACTCCG 59.592 66.667 0.00 0.00 0.00 4.63
9552 10698 2.783288 CCCTCCGCTCCGTAACTCC 61.783 68.421 0.00 0.00 0.00 3.85
9553 10699 1.108132 ATCCCTCCGCTCCGTAACTC 61.108 60.000 0.00 0.00 0.00 3.01
9554 10700 0.686769 AATCCCTCCGCTCCGTAACT 60.687 55.000 0.00 0.00 0.00 2.24
9555 10701 0.249363 GAATCCCTCCGCTCCGTAAC 60.249 60.000 0.00 0.00 0.00 2.50
9556 10702 1.397390 GGAATCCCTCCGCTCCGTAA 61.397 60.000 0.00 0.00 33.37 3.18
9557 10703 1.831286 GGAATCCCTCCGCTCCGTA 60.831 63.158 0.00 0.00 33.37 4.02
9558 10704 3.155167 GGAATCCCTCCGCTCCGT 61.155 66.667 0.00 0.00 33.37 4.69
9565 10711 0.179070 GCTCTGTTCGGAATCCCTCC 60.179 60.000 0.00 0.00 41.40 4.30
9566 10712 0.179070 GGCTCTGTTCGGAATCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
9567 10713 0.618968 AGGCTCTGTTCGGAATCCCT 60.619 55.000 0.00 0.00 0.00 4.20
9568 10714 0.253327 AAGGCTCTGTTCGGAATCCC 59.747 55.000 0.00 0.00 0.00 3.85
9569 10715 2.168728 ACTAAGGCTCTGTTCGGAATCC 59.831 50.000 0.00 0.00 0.00 3.01
9570 10716 3.528597 ACTAAGGCTCTGTTCGGAATC 57.471 47.619 0.00 0.00 0.00 2.52
9571 10717 3.008049 ACAACTAAGGCTCTGTTCGGAAT 59.992 43.478 0.00 0.00 0.00 3.01
9572 10718 2.367567 ACAACTAAGGCTCTGTTCGGAA 59.632 45.455 2.68 0.00 0.00 4.30
9573 10719 1.968493 ACAACTAAGGCTCTGTTCGGA 59.032 47.619 2.68 0.00 0.00 4.55
9574 10720 2.069273 CACAACTAAGGCTCTGTTCGG 58.931 52.381 2.68 0.00 0.00 4.30
9575 10721 2.069273 CCACAACTAAGGCTCTGTTCG 58.931 52.381 2.68 2.80 0.00 3.95
9584 10730 6.260936 CACTATAATCCAAGCCACAACTAAGG 59.739 42.308 0.00 0.00 0.00 2.69
9585 10731 7.047891 TCACTATAATCCAAGCCACAACTAAG 58.952 38.462 0.00 0.00 0.00 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.