Multiple sequence alignment - TraesCS1D01G168500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G168500 chr1D 100.000 4079 0 0 1 4079 240666427 240662349 0.000000e+00 7533.0
1 TraesCS1D01G168500 chr1D 100.000 82 0 0 3687 3768 240662659 240662578 7.060000e-33 152.0
2 TraesCS1D01G168500 chr1D 100.000 82 0 0 3769 3850 240662741 240662660 7.060000e-33 152.0
3 TraesCS1D01G168500 chr1D 97.619 42 1 0 3131 3172 303314732 303314691 5.660000e-09 73.1
4 TraesCS1D01G168500 chr1B 95.580 2896 76 17 886 3768 333595458 333598314 0.000000e+00 4591.0
5 TraesCS1D01G168500 chr1B 92.364 550 25 10 358 898 333501527 333502068 0.000000e+00 767.0
6 TraesCS1D01G168500 chr1B 97.106 311 9 0 3769 4079 333598233 333598543 3.610000e-145 525.0
7 TraesCS1D01G168500 chr1A 95.487 2770 81 19 789 3539 305336235 305333491 0.000000e+00 4383.0
8 TraesCS1D01G168500 chr1A 87.045 247 28 2 3770 4016 305333261 305333019 4.020000e-70 276.0
9 TraesCS1D01G168500 chr1A 90.155 193 11 4 3579 3767 305333370 305333182 1.130000e-60 244.0
10 TraesCS1D01G168500 chr1A 95.238 42 2 0 3131 3172 380947113 380947072 2.630000e-07 67.6
11 TraesCS1D01G168500 chr7B 87.606 355 36 8 3 352 181407945 181408296 4.910000e-109 405.0
12 TraesCS1D01G168500 chr6D 87.784 352 36 5 3 352 138366505 138366159 4.910000e-109 405.0
13 TraesCS1D01G168500 chr6D 80.968 310 50 9 15 320 320716491 320716187 1.900000e-58 237.0
14 TraesCS1D01G168500 chr6D 97.500 40 1 0 3131 3170 410152941 410152902 7.320000e-08 69.4
15 TraesCS1D01G168500 chr6A 84.270 356 45 10 3 353 180927354 180927005 1.820000e-88 337.0
16 TraesCS1D01G168500 chr6A 97.561 41 1 0 3131 3171 99787477 99787437 2.030000e-08 71.3
17 TraesCS1D01G168500 chr3D 83.565 359 47 11 5 357 6302645 6302293 3.930000e-85 326.0
18 TraesCS1D01G168500 chr3D 81.579 152 24 3 177 328 6302538 6302685 5.540000e-24 122.0
19 TraesCS1D01G168500 chr3D 78.571 168 24 12 363 526 1657483 1657324 2.590000e-17 100.0
20 TraesCS1D01G168500 chr3D 95.556 45 1 1 3131 3174 377201903 377201859 2.030000e-08 71.3
21 TraesCS1D01G168500 chr2B 83.051 354 52 5 7 359 65476910 65476564 8.510000e-82 315.0
22 TraesCS1D01G168500 chr4D 84.099 283 23 14 12 279 8624990 8624715 1.880000e-63 254.0
23 TraesCS1D01G168500 chr4D 78.736 174 25 6 1137 1299 392758305 392758477 5.580000e-19 106.0
24 TraesCS1D01G168500 chr3B 81.690 142 20 4 187 328 544546098 544546233 3.330000e-21 113.0
25 TraesCS1D01G168500 chr2A 76.042 192 31 12 382 560 724421433 724421622 7.260000e-13 86.1
26 TraesCS1D01G168500 chr3A 78.676 136 18 10 363 494 7312929 7313057 3.380000e-11 80.5
27 TraesCS1D01G168500 chr5A 93.617 47 2 1 3131 3177 605241816 605241771 7.320000e-08 69.4
28 TraesCS1D01G168500 chr4A 95.000 40 2 0 3131 3170 506167107 506167068 3.400000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G168500 chr1D 240662349 240666427 4078 True 2612.333333 7533 100.000000 1 4079 3 chr1D.!!$R2 4078
1 TraesCS1D01G168500 chr1B 333595458 333598543 3085 False 2558.000000 4591 96.343000 886 4079 2 chr1B.!!$F2 3193
2 TraesCS1D01G168500 chr1B 333501527 333502068 541 False 767.000000 767 92.364000 358 898 1 chr1B.!!$F1 540
3 TraesCS1D01G168500 chr1A 305333019 305336235 3216 True 1634.333333 4383 90.895667 789 4016 3 chr1A.!!$R2 3227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.031857 TGCCACAAATGCGTTTCCTG 59.968 50.000 0.00 0.0 0.00 3.86 F
1089 1103 0.105709 CCTCTTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.0 0.00 4.30 F
1593 1611 0.591741 CGTACGATGGCGACTCCTTC 60.592 60.000 10.44 0.0 41.64 3.46 F
2398 2421 1.216710 CCCCTCGAGTGAAGACAGC 59.783 63.158 12.31 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1445 0.887836 AGAGCGTGTAGTCCGTCACA 60.888 55.000 0.00 0.0 34.66 3.58 R
2553 2576 0.242017 GCATGCACAACTTCCCAGAC 59.758 55.000 14.21 0.0 0.00 3.51 R
2660 2683 2.426024 CACTATTGCTTGGCTGCTCATT 59.574 45.455 0.00 0.0 0.00 2.57 R
3798 3920 0.034756 CATGGGTGTGGTCTTCGACA 59.965 55.000 0.00 0.0 33.68 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.527157 TCTAAAATTTGGTGATATCAAACCTGA 57.473 29.630 7.07 0.00 37.00 3.86
48 49 9.793252 CTAAAATTTGGTGATATCAAACCTGAG 57.207 33.333 7.07 0.00 37.00 3.35
49 50 5.841957 ATTTGGTGATATCAAACCTGAGC 57.158 39.130 7.07 0.00 37.00 4.26
50 51 4.574674 TTGGTGATATCAAACCTGAGCT 57.425 40.909 7.07 0.00 37.36 4.09
51 52 4.142609 TGGTGATATCAAACCTGAGCTC 57.857 45.455 7.07 6.82 37.36 4.09
52 53 3.776969 TGGTGATATCAAACCTGAGCTCT 59.223 43.478 16.19 0.00 37.36 4.09
53 54 4.141846 TGGTGATATCAAACCTGAGCTCTC 60.142 45.833 16.19 0.11 37.36 3.20
54 55 4.141846 GGTGATATCAAACCTGAGCTCTCA 60.142 45.833 16.19 3.01 34.23 3.27
55 56 5.423015 GTGATATCAAACCTGAGCTCTCAA 58.577 41.667 16.19 0.00 39.39 3.02
56 57 6.054295 GTGATATCAAACCTGAGCTCTCAAT 58.946 40.000 16.19 1.95 39.39 2.57
57 58 6.202570 GTGATATCAAACCTGAGCTCTCAATC 59.797 42.308 16.19 5.79 39.39 2.67
58 59 4.840716 ATCAAACCTGAGCTCTCAATCT 57.159 40.909 16.19 0.00 39.39 2.40
59 60 5.946942 ATCAAACCTGAGCTCTCAATCTA 57.053 39.130 16.19 0.00 39.39 1.98
60 61 5.078411 TCAAACCTGAGCTCTCAATCTAC 57.922 43.478 16.19 0.00 39.39 2.59
61 62 4.081420 TCAAACCTGAGCTCTCAATCTACC 60.081 45.833 16.19 0.00 39.39 3.18
62 63 2.393646 ACCTGAGCTCTCAATCTACCC 58.606 52.381 16.19 0.00 39.39 3.69
63 64 2.023501 ACCTGAGCTCTCAATCTACCCT 60.024 50.000 16.19 0.00 39.39 4.34
64 65 2.364970 CCTGAGCTCTCAATCTACCCTG 59.635 54.545 16.19 0.00 39.39 4.45
65 66 3.030291 CTGAGCTCTCAATCTACCCTGT 58.970 50.000 16.19 0.00 39.39 4.00
66 67 2.762887 TGAGCTCTCAATCTACCCTGTG 59.237 50.000 16.19 0.00 36.53 3.66
67 68 2.763448 GAGCTCTCAATCTACCCTGTGT 59.237 50.000 6.43 0.00 0.00 3.72
68 69 2.499289 AGCTCTCAATCTACCCTGTGTG 59.501 50.000 0.00 0.00 0.00 3.82
69 70 2.497675 GCTCTCAATCTACCCTGTGTGA 59.502 50.000 0.00 0.00 0.00 3.58
70 71 3.055819 GCTCTCAATCTACCCTGTGTGAA 60.056 47.826 0.00 0.00 0.00 3.18
71 72 4.563580 GCTCTCAATCTACCCTGTGTGAAA 60.564 45.833 0.00 0.00 0.00 2.69
72 73 5.738909 CTCTCAATCTACCCTGTGTGAAAT 58.261 41.667 0.00 0.00 0.00 2.17
73 74 6.126863 TCTCAATCTACCCTGTGTGAAATT 57.873 37.500 0.00 0.00 0.00 1.82
74 75 6.542821 TCTCAATCTACCCTGTGTGAAATTT 58.457 36.000 0.00 0.00 0.00 1.82
75 76 6.655003 TCTCAATCTACCCTGTGTGAAATTTC 59.345 38.462 11.41 11.41 0.00 2.17
76 77 5.411361 TCAATCTACCCTGTGTGAAATTTCG 59.589 40.000 13.34 0.07 0.00 3.46
77 78 4.345859 TCTACCCTGTGTGAAATTTCGT 57.654 40.909 13.34 5.90 0.00 3.85
78 79 4.062293 TCTACCCTGTGTGAAATTTCGTG 58.938 43.478 13.34 2.08 0.00 4.35
79 80 2.925724 ACCCTGTGTGAAATTTCGTGA 58.074 42.857 13.34 0.00 0.00 4.35
80 81 3.283751 ACCCTGTGTGAAATTTCGTGAA 58.716 40.909 13.34 0.00 0.00 3.18
81 82 3.697045 ACCCTGTGTGAAATTTCGTGAAA 59.303 39.130 13.34 0.00 34.46 2.69
82 83 4.158764 ACCCTGTGTGAAATTTCGTGAAAA 59.841 37.500 13.34 0.00 33.56 2.29
83 84 5.105752 CCCTGTGTGAAATTTCGTGAAAAA 58.894 37.500 13.34 0.00 33.56 1.94
104 105 5.813080 AAAATACCAGGAAACGTATCTGC 57.187 39.130 0.00 0.00 0.00 4.26
105 106 2.572191 TACCAGGAAACGTATCTGCG 57.428 50.000 0.00 0.00 37.94 5.18
106 107 0.108329 ACCAGGAAACGTATCTGCGG 60.108 55.000 0.00 0.00 35.98 5.69
107 108 1.429148 CCAGGAAACGTATCTGCGGC 61.429 60.000 0.00 0.00 35.98 6.53
108 109 1.518572 AGGAAACGTATCTGCGGCG 60.519 57.895 0.51 0.51 35.98 6.46
109 110 1.517694 GGAAACGTATCTGCGGCGA 60.518 57.895 12.98 0.00 35.98 5.54
110 111 1.079875 GGAAACGTATCTGCGGCGAA 61.080 55.000 12.98 0.00 35.98 4.70
111 112 0.297820 GAAACGTATCTGCGGCGAAG 59.702 55.000 12.98 10.94 35.98 3.79
112 113 1.082117 AAACGTATCTGCGGCGAAGG 61.082 55.000 16.28 0.57 35.98 3.46
113 114 1.940883 AACGTATCTGCGGCGAAGGA 61.941 55.000 16.28 7.20 35.98 3.36
114 115 1.226859 CGTATCTGCGGCGAAGGAA 60.227 57.895 16.28 0.00 0.00 3.36
115 116 0.804544 CGTATCTGCGGCGAAGGAAA 60.805 55.000 16.28 0.00 0.00 3.13
116 117 1.583054 GTATCTGCGGCGAAGGAAAT 58.417 50.000 16.28 3.75 0.00 2.17
117 118 2.750948 GTATCTGCGGCGAAGGAAATA 58.249 47.619 16.28 2.66 0.00 1.40
118 119 1.583054 ATCTGCGGCGAAGGAAATAC 58.417 50.000 16.28 0.00 0.00 1.89
119 120 0.461339 TCTGCGGCGAAGGAAATACC 60.461 55.000 16.28 0.00 39.35 2.73
120 121 1.762222 CTGCGGCGAAGGAAATACCG 61.762 60.000 12.98 0.00 46.50 4.02
121 122 1.812507 GCGGCGAAGGAAATACCGT 60.813 57.895 12.98 0.00 45.53 4.83
122 123 1.759293 GCGGCGAAGGAAATACCGTC 61.759 60.000 12.98 0.00 45.53 4.79
123 124 1.149964 CGGCGAAGGAAATACCGTCC 61.150 60.000 0.00 0.00 42.68 4.79
124 125 1.149964 GGCGAAGGAAATACCGTCCG 61.150 60.000 0.00 0.00 42.68 4.79
125 126 0.179129 GCGAAGGAAATACCGTCCGA 60.179 55.000 0.00 0.00 42.68 4.55
126 127 1.736696 GCGAAGGAAATACCGTCCGAA 60.737 52.381 0.00 0.00 42.68 4.30
127 128 1.922545 CGAAGGAAATACCGTCCGAAC 59.077 52.381 0.00 0.00 42.68 3.95
128 129 2.671914 CGAAGGAAATACCGTCCGAACA 60.672 50.000 0.00 0.00 42.68 3.18
129 130 3.328505 GAAGGAAATACCGTCCGAACAA 58.671 45.455 0.00 0.00 44.74 2.83
130 131 3.405823 AGGAAATACCGTCCGAACAAA 57.594 42.857 0.00 0.00 44.74 2.83
131 132 3.742385 AGGAAATACCGTCCGAACAAAA 58.258 40.909 0.00 0.00 44.74 2.44
132 133 4.136051 AGGAAATACCGTCCGAACAAAAA 58.864 39.130 0.00 0.00 44.74 1.94
133 134 4.763279 AGGAAATACCGTCCGAACAAAAAT 59.237 37.500 0.00 0.00 44.74 1.82
134 135 5.090757 GGAAATACCGTCCGAACAAAAATC 58.909 41.667 0.00 0.00 0.00 2.17
135 136 4.690184 AATACCGTCCGAACAAAAATCC 57.310 40.909 0.00 0.00 0.00 3.01
136 137 1.970092 ACCGTCCGAACAAAAATCCA 58.030 45.000 0.00 0.00 0.00 3.41
137 138 2.510613 ACCGTCCGAACAAAAATCCAT 58.489 42.857 0.00 0.00 0.00 3.41
138 139 2.486592 ACCGTCCGAACAAAAATCCATC 59.513 45.455 0.00 0.00 0.00 3.51
139 140 2.159435 CCGTCCGAACAAAAATCCATCC 60.159 50.000 0.00 0.00 0.00 3.51
140 141 2.486203 CGTCCGAACAAAAATCCATCCA 59.514 45.455 0.00 0.00 0.00 3.41
141 142 3.057876 CGTCCGAACAAAAATCCATCCAA 60.058 43.478 0.00 0.00 0.00 3.53
142 143 4.557695 CGTCCGAACAAAAATCCATCCAAA 60.558 41.667 0.00 0.00 0.00 3.28
143 144 5.478407 GTCCGAACAAAAATCCATCCAAAT 58.522 37.500 0.00 0.00 0.00 2.32
144 145 5.348451 GTCCGAACAAAAATCCATCCAAATG 59.652 40.000 0.00 0.00 0.00 2.32
145 146 5.011533 TCCGAACAAAAATCCATCCAAATGT 59.988 36.000 0.00 0.00 0.00 2.71
146 147 5.700373 CCGAACAAAAATCCATCCAAATGTT 59.300 36.000 0.00 0.00 32.89 2.71
147 148 6.204495 CCGAACAAAAATCCATCCAAATGTTT 59.796 34.615 0.00 0.00 30.58 2.83
148 149 7.255070 CCGAACAAAAATCCATCCAAATGTTTT 60.255 33.333 0.00 0.00 30.58 2.43
149 150 8.127954 CGAACAAAAATCCATCCAAATGTTTTT 58.872 29.630 0.00 0.00 34.18 1.94
180 181 8.113675 ACACATACGAAATTTTTGTCTTTTTGC 58.886 29.630 5.28 0.00 0.00 3.68
181 182 7.582319 CACATACGAAATTTTTGTCTTTTTGCC 59.418 33.333 5.28 0.00 0.00 4.52
182 183 7.278868 ACATACGAAATTTTTGTCTTTTTGCCA 59.721 29.630 5.28 0.00 0.00 4.92
183 184 5.863898 ACGAAATTTTTGTCTTTTTGCCAC 58.136 33.333 0.00 0.00 0.00 5.01
184 185 5.409826 ACGAAATTTTTGTCTTTTTGCCACA 59.590 32.000 0.00 0.00 0.00 4.17
185 186 6.073003 ACGAAATTTTTGTCTTTTTGCCACAA 60.073 30.769 0.00 0.00 0.00 3.33
186 187 6.798959 CGAAATTTTTGTCTTTTTGCCACAAA 59.201 30.769 0.00 0.00 38.06 2.83
187 188 7.484324 CGAAATTTTTGTCTTTTTGCCACAAAT 59.516 29.630 0.00 0.00 39.23 2.32
188 189 8.463456 AAATTTTTGTCTTTTTGCCACAAATG 57.537 26.923 0.00 0.00 39.23 2.32
189 190 4.612932 TTTGTCTTTTTGCCACAAATGC 57.387 36.364 0.00 0.00 35.57 3.56
190 191 2.200067 TGTCTTTTTGCCACAAATGCG 58.800 42.857 0.00 0.00 0.00 4.73
191 192 2.200899 GTCTTTTTGCCACAAATGCGT 58.799 42.857 0.00 0.00 0.00 5.24
192 193 2.607180 GTCTTTTTGCCACAAATGCGTT 59.393 40.909 0.00 0.00 0.00 4.84
193 194 3.063316 GTCTTTTTGCCACAAATGCGTTT 59.937 39.130 0.00 0.00 0.00 3.60
194 195 3.308323 TCTTTTTGCCACAAATGCGTTTC 59.692 39.130 0.00 0.00 0.00 2.78
195 196 1.576356 TTTGCCACAAATGCGTTTCC 58.424 45.000 0.00 0.00 0.00 3.13
196 197 0.749649 TTGCCACAAATGCGTTTCCT 59.250 45.000 0.00 0.00 0.00 3.36
197 198 0.031857 TGCCACAAATGCGTTTCCTG 59.968 50.000 0.00 0.00 0.00 3.86
198 199 0.667184 GCCACAAATGCGTTTCCTGG 60.667 55.000 16.00 16.00 0.00 4.45
199 200 0.673437 CCACAAATGCGTTTCCTGGT 59.327 50.000 13.43 2.36 0.00 4.00
200 201 1.883275 CCACAAATGCGTTTCCTGGTA 59.117 47.619 13.43 0.00 0.00 3.25
201 202 2.491693 CCACAAATGCGTTTCCTGGTAT 59.508 45.455 13.43 0.00 0.00 2.73
202 203 3.056891 CCACAAATGCGTTTCCTGGTATT 60.057 43.478 13.43 0.00 0.00 1.89
203 204 4.555262 CACAAATGCGTTTCCTGGTATTT 58.445 39.130 0.00 0.00 0.00 1.40
204 205 4.987912 CACAAATGCGTTTCCTGGTATTTT 59.012 37.500 0.00 0.00 0.00 1.82
205 206 5.118510 CACAAATGCGTTTCCTGGTATTTTC 59.881 40.000 0.00 0.00 0.00 2.29
206 207 5.010617 ACAAATGCGTTTCCTGGTATTTTCT 59.989 36.000 0.00 0.00 0.00 2.52
207 208 4.965119 ATGCGTTTCCTGGTATTTTCTC 57.035 40.909 0.00 0.00 0.00 2.87
208 209 3.745799 TGCGTTTCCTGGTATTTTCTCA 58.254 40.909 0.00 0.00 0.00 3.27
209 210 4.331968 TGCGTTTCCTGGTATTTTCTCAT 58.668 39.130 0.00 0.00 0.00 2.90
210 211 4.155826 TGCGTTTCCTGGTATTTTCTCATG 59.844 41.667 0.00 0.00 0.00 3.07
211 212 4.394920 GCGTTTCCTGGTATTTTCTCATGA 59.605 41.667 0.00 0.00 0.00 3.07
212 213 5.106317 GCGTTTCCTGGTATTTTCTCATGAA 60.106 40.000 0.00 0.00 0.00 2.57
213 214 6.569610 GCGTTTCCTGGTATTTTCTCATGAAA 60.570 38.462 0.00 0.00 40.08 2.69
214 215 7.538575 CGTTTCCTGGTATTTTCTCATGAAAT 58.461 34.615 0.00 0.00 41.24 2.17
215 216 8.028938 CGTTTCCTGGTATTTTCTCATGAAATT 58.971 33.333 0.00 0.00 41.24 1.82
216 217 9.710900 GTTTCCTGGTATTTTCTCATGAAATTT 57.289 29.630 0.00 0.00 41.24 1.82
217 218 9.927668 TTTCCTGGTATTTTCTCATGAAATTTC 57.072 29.630 11.41 11.41 41.24 2.17
218 219 8.648698 TCCTGGTATTTTCTCATGAAATTTCA 57.351 30.769 22.52 22.52 41.24 2.69
219 220 8.522830 TCCTGGTATTTTCTCATGAAATTTCAC 58.477 33.333 22.71 6.32 41.24 3.18
220 221 8.306038 CCTGGTATTTTCTCATGAAATTTCACA 58.694 33.333 22.71 11.61 41.24 3.58
221 222 9.132521 CTGGTATTTTCTCATGAAATTTCACAC 57.867 33.333 22.71 9.25 41.24 3.82
222 223 7.807433 TGGTATTTTCTCATGAAATTTCACACG 59.193 33.333 22.71 14.05 41.24 4.49
223 224 7.273381 GGTATTTTCTCATGAAATTTCACACGG 59.727 37.037 22.71 12.60 41.24 4.94
224 225 4.764679 TTCTCATGAAATTTCACACGGG 57.235 40.909 22.71 14.04 40.49 5.28
225 226 4.014569 TCTCATGAAATTTCACACGGGA 57.985 40.909 22.71 15.98 40.49 5.14
226 227 4.002982 TCTCATGAAATTTCACACGGGAG 58.997 43.478 22.71 20.54 40.49 4.30
227 228 3.750371 TCATGAAATTTCACACGGGAGT 58.250 40.909 22.71 1.94 41.15 3.85
228 229 4.900684 TCATGAAATTTCACACGGGAGTA 58.099 39.130 22.71 0.00 40.23 2.59
229 230 4.935205 TCATGAAATTTCACACGGGAGTAG 59.065 41.667 22.71 4.00 40.23 2.57
230 231 4.610605 TGAAATTTCACACGGGAGTAGA 57.389 40.909 16.91 0.00 34.62 2.59
231 232 5.160607 TGAAATTTCACACGGGAGTAGAT 57.839 39.130 16.91 0.00 34.62 1.98
232 233 5.556915 TGAAATTTCACACGGGAGTAGATT 58.443 37.500 16.91 0.00 34.62 2.40
233 234 5.411361 TGAAATTTCACACGGGAGTAGATTG 59.589 40.000 16.91 0.00 34.62 2.67
234 235 3.328382 TTTCACACGGGAGTAGATTGG 57.672 47.619 0.00 0.00 44.67 3.16
235 236 1.191535 TCACACGGGAGTAGATTGGG 58.808 55.000 0.00 0.00 44.67 4.12
236 237 1.191535 CACACGGGAGTAGATTGGGA 58.808 55.000 0.00 0.00 44.67 4.37
237 238 1.553248 CACACGGGAGTAGATTGGGAA 59.447 52.381 0.00 0.00 44.67 3.97
238 239 1.553704 ACACGGGAGTAGATTGGGAAC 59.446 52.381 0.00 0.00 44.67 3.62
254 255 2.847441 GGAACCCGGGTTTGATATCTC 58.153 52.381 38.48 23.25 38.60 2.75
255 256 2.171870 GGAACCCGGGTTTGATATCTCA 59.828 50.000 38.48 0.00 38.60 3.27
256 257 3.371166 GGAACCCGGGTTTGATATCTCAA 60.371 47.826 38.48 0.00 39.62 3.02
257 258 4.266714 GAACCCGGGTTTGATATCTCAAA 58.733 43.478 38.48 2.34 46.53 2.69
326 327 5.700402 ATGTTCATATAGGGGTATGGAGC 57.300 43.478 0.00 0.00 33.77 4.70
327 328 4.498493 TGTTCATATAGGGGTATGGAGCA 58.502 43.478 0.00 0.00 33.77 4.26
328 329 5.100811 TGTTCATATAGGGGTATGGAGCAT 58.899 41.667 0.00 0.00 33.77 3.79
329 330 5.189736 TGTTCATATAGGGGTATGGAGCATC 59.810 44.000 0.00 0.00 33.77 3.91
341 342 3.543884 GAGCATCCGGGTGTTACAA 57.456 52.632 17.87 0.00 0.00 2.41
342 343 1.816074 GAGCATCCGGGTGTTACAAA 58.184 50.000 17.87 0.00 0.00 2.83
343 344 2.365582 GAGCATCCGGGTGTTACAAAT 58.634 47.619 17.87 0.00 0.00 2.32
344 345 2.354821 GAGCATCCGGGTGTTACAAATC 59.645 50.000 17.87 0.00 0.00 2.17
345 346 1.404035 GCATCCGGGTGTTACAAATCC 59.596 52.381 17.87 0.00 0.00 3.01
346 347 2.717390 CATCCGGGTGTTACAAATCCA 58.283 47.619 6.53 0.00 0.00 3.41
347 348 2.188062 TCCGGGTGTTACAAATCCAC 57.812 50.000 0.00 0.00 0.00 4.02
348 349 1.700739 TCCGGGTGTTACAAATCCACT 59.299 47.619 0.00 0.00 0.00 4.00
349 350 2.106857 TCCGGGTGTTACAAATCCACTT 59.893 45.455 0.00 0.00 0.00 3.16
350 351 2.486592 CCGGGTGTTACAAATCCACTTC 59.513 50.000 0.00 0.00 0.00 3.01
351 352 2.486592 CGGGTGTTACAAATCCACTTCC 59.513 50.000 0.00 0.00 0.00 3.46
352 353 2.823747 GGGTGTTACAAATCCACTTCCC 59.176 50.000 0.00 0.00 0.00 3.97
353 354 3.499745 GGGTGTTACAAATCCACTTCCCT 60.500 47.826 0.00 0.00 0.00 4.20
354 355 4.263594 GGGTGTTACAAATCCACTTCCCTA 60.264 45.833 0.00 0.00 0.00 3.53
355 356 5.506708 GGTGTTACAAATCCACTTCCCTAT 58.493 41.667 0.00 0.00 0.00 2.57
356 357 5.357032 GGTGTTACAAATCCACTTCCCTATG 59.643 44.000 0.00 0.00 0.00 2.23
406 407 7.664110 AAAGCTCACTTCAACATGCAAACATG 61.664 38.462 4.55 4.55 46.62 3.21
578 586 5.656480 TGAAAAGTTTTGCTTTACACCCTC 58.344 37.500 5.36 0.00 45.91 4.30
583 591 4.141111 AGTTTTGCTTTACACCCTCCCTTA 60.141 41.667 0.00 0.00 0.00 2.69
587 595 4.403734 TGCTTTACACCCTCCCTTAAAAG 58.596 43.478 0.00 0.00 0.00 2.27
592 600 7.014518 GCTTTACACCCTCCCTTAAAAGTTTAA 59.985 37.037 0.00 0.00 0.00 1.52
593 601 8.467963 TTTACACCCTCCCTTAAAAGTTTAAG 57.532 34.615 14.13 14.13 45.70 1.85
594 602 6.022107 ACACCCTCCCTTAAAAGTTTAAGT 57.978 37.500 17.89 1.94 45.03 2.24
595 603 6.437755 ACACCCTCCCTTAAAAGTTTAAGTT 58.562 36.000 17.89 0.00 45.03 2.66
596 604 6.548622 ACACCCTCCCTTAAAAGTTTAAGTTC 59.451 38.462 17.89 0.00 45.03 3.01
597 605 6.548251 CACCCTCCCTTAAAAGTTTAAGTTCA 59.452 38.462 17.89 5.14 45.03 3.18
632 640 6.710597 AAGTGACTTAAGGCTATCGTCATA 57.289 37.500 10.33 0.00 37.02 2.15
810 820 3.058016 ACATTGTTGCCATCTTCTTCACG 60.058 43.478 0.00 0.00 0.00 4.35
828 838 7.357303 TCTTCACGCTTTAAATGTTCCTAAAC 58.643 34.615 0.00 0.00 35.85 2.01
912 922 2.045926 GGTGAGCAACTCCGGCAT 60.046 61.111 0.00 0.00 0.00 4.40
917 927 3.512516 GCAACTCCGGCATGCTCC 61.513 66.667 18.92 0.00 37.12 4.70
950 960 2.177531 CCGGTACTCCACGTGTCG 59.822 66.667 15.65 7.29 0.00 4.35
961 972 0.667487 CACGTGTCGAAGCTCACCAT 60.667 55.000 7.58 0.00 0.00 3.55
1074 1088 2.995872 GCACGGCGAGTCTTCCTCT 61.996 63.158 16.62 0.00 38.11 3.69
1075 1089 1.587054 CACGGCGAGTCTTCCTCTT 59.413 57.895 16.62 0.00 38.11 2.85
1076 1090 0.456995 CACGGCGAGTCTTCCTCTTC 60.457 60.000 16.62 0.00 38.11 2.87
1077 1091 1.139947 CGGCGAGTCTTCCTCTTCC 59.860 63.158 0.00 0.00 38.11 3.46
1078 1092 1.316706 CGGCGAGTCTTCCTCTTCCT 61.317 60.000 0.00 0.00 38.11 3.36
1079 1093 0.458260 GGCGAGTCTTCCTCTTCCTC 59.542 60.000 0.00 0.00 38.11 3.71
1080 1094 0.458260 GCGAGTCTTCCTCTTCCTCC 59.542 60.000 0.00 0.00 38.11 4.30
1081 1095 1.958069 GCGAGTCTTCCTCTTCCTCCT 60.958 57.143 0.00 0.00 38.11 3.69
1082 1096 2.021457 CGAGTCTTCCTCTTCCTCCTC 58.979 57.143 0.00 0.00 38.11 3.71
1083 1097 2.384828 GAGTCTTCCTCTTCCTCCTCC 58.615 57.143 0.00 0.00 37.22 4.30
1084 1098 2.007636 AGTCTTCCTCTTCCTCCTCCT 58.992 52.381 0.00 0.00 0.00 3.69
1085 1099 2.024369 AGTCTTCCTCTTCCTCCTCCTC 60.024 54.545 0.00 0.00 0.00 3.71
1089 1103 0.105709 CCTCTTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1100 1114 1.705450 CCTCCTCCTCCCCCTCCTA 60.705 68.421 0.00 0.00 0.00 2.94
1104 1118 2.287427 TCCTCCCCCTCCTACCGA 60.287 66.667 0.00 0.00 0.00 4.69
1317 1331 3.112709 GACAAGGCACGCCGTCTC 61.113 66.667 1.61 0.00 41.95 3.36
1325 1339 2.049063 ACGCCGTCTCTGCTTCAC 60.049 61.111 0.00 0.00 0.00 3.18
1327 1341 2.091112 CGCCGTCTCTGCTTCACTG 61.091 63.158 0.00 0.00 0.00 3.66
1329 1343 1.739562 CCGTCTCTGCTTCACTGCC 60.740 63.158 0.00 0.00 0.00 4.85
1388 1402 1.733912 TGCTCGACTGATTGATTGTGC 59.266 47.619 0.00 0.00 0.00 4.57
1590 1608 2.025727 CCGTACGATGGCGACTCC 59.974 66.667 18.76 0.00 41.64 3.85
1591 1609 2.478890 CCGTACGATGGCGACTCCT 61.479 63.158 18.76 0.00 41.64 3.69
1592 1610 1.432251 CGTACGATGGCGACTCCTT 59.568 57.895 10.44 0.00 41.64 3.36
1593 1611 0.591741 CGTACGATGGCGACTCCTTC 60.592 60.000 10.44 0.00 41.64 3.46
1616 1634 8.909708 TTCTCATTGTTTCAGTTTTGTAGTTG 57.090 30.769 0.00 0.00 0.00 3.16
1618 1636 8.519526 TCTCATTGTTTCAGTTTTGTAGTTGTT 58.480 29.630 0.00 0.00 0.00 2.83
1621 1639 9.527566 CATTGTTTCAGTTTTGTAGTTGTTTTG 57.472 29.630 0.00 0.00 0.00 2.44
1623 1641 7.210873 TGTTTCAGTTTTGTAGTTGTTTTGGT 58.789 30.769 0.00 0.00 0.00 3.67
1634 1657 7.708998 TGTAGTTGTTTTGGTTAGATTGTTCC 58.291 34.615 0.00 0.00 0.00 3.62
1660 1683 6.307800 GGTCGTTGTTAATTCATGTGAAATGG 59.692 38.462 0.00 0.00 37.61 3.16
1827 1850 8.123445 TCTATTAAGCGTAATTTCGGTTCTTC 57.877 34.615 22.29 0.00 46.00 2.87
1868 1891 5.123820 TCTGTGCTATTTTGCTACATGGTTC 59.876 40.000 0.00 0.00 0.00 3.62
1874 1897 6.763610 GCTATTTTGCTACATGGTTCTAGAGT 59.236 38.462 0.00 0.00 0.00 3.24
2269 2292 2.439156 GGTGCTGCCCATGGACTC 60.439 66.667 15.22 2.24 0.00 3.36
2398 2421 1.216710 CCCCTCGAGTGAAGACAGC 59.783 63.158 12.31 0.00 0.00 4.40
2450 2473 2.270986 GCCCCTGGTGTTGCTCTTG 61.271 63.158 0.00 0.00 0.00 3.02
2541 2564 5.744171 TGTATGCATCTTATTCACACCACT 58.256 37.500 0.19 0.00 0.00 4.00
2553 2576 1.939934 CACACCACTTATGCATACCCG 59.060 52.381 5.74 0.66 0.00 5.28
2660 2683 5.800296 TGGCACAAGTTTTAGCTATGACTA 58.200 37.500 9.24 0.00 31.92 2.59
3018 3041 2.830370 GGAAAGGCTGGGATGGCG 60.830 66.667 0.00 0.00 37.59 5.69
3081 3104 2.280628 CCCGCCTATGAACTTTGAGTC 58.719 52.381 0.00 0.00 0.00 3.36
3163 3188 4.224147 TGATCTTACATTTTGGGACGGAGA 59.776 41.667 0.00 0.00 0.00 3.71
3491 3528 6.608539 TTGACCCATGATCATGAACATTTT 57.391 33.333 32.71 11.20 41.20 1.82
3768 3890 2.169561 TGTCGGCAATACCATTCAGCTA 59.830 45.455 0.00 0.00 39.03 3.32
3769 3891 2.544267 GTCGGCAATACCATTCAGCTAC 59.456 50.000 0.00 0.00 39.03 3.58
3770 3892 1.526887 CGGCAATACCATTCAGCTACG 59.473 52.381 0.00 0.00 39.03 3.51
3772 3894 3.202906 GGCAATACCATTCAGCTACGAA 58.797 45.455 0.00 0.00 38.86 3.85
3773 3895 3.248602 GGCAATACCATTCAGCTACGAAG 59.751 47.826 0.00 0.00 38.86 3.79
3774 3896 4.119862 GCAATACCATTCAGCTACGAAGA 58.880 43.478 0.00 0.00 0.00 2.87
3775 3897 4.210120 GCAATACCATTCAGCTACGAAGAG 59.790 45.833 0.00 0.00 0.00 2.85
3776 3898 5.352284 CAATACCATTCAGCTACGAAGAGT 58.648 41.667 0.00 0.00 0.00 3.24
3777 3899 6.504398 CAATACCATTCAGCTACGAAGAGTA 58.496 40.000 0.00 0.00 0.00 2.59
3787 3909 2.599408 ACGAAGAGTAGAGGGGACAA 57.401 50.000 0.00 0.00 0.00 3.18
3788 3910 2.169330 ACGAAGAGTAGAGGGGACAAC 58.831 52.381 0.00 0.00 0.00 3.32
3789 3911 1.132643 CGAAGAGTAGAGGGGACAACG 59.867 57.143 0.00 0.00 0.00 4.10
3790 3912 1.477295 GAAGAGTAGAGGGGACAACGG 59.523 57.143 0.00 0.00 0.00 4.44
3791 3913 0.324460 AGAGTAGAGGGGACAACGGG 60.324 60.000 0.00 0.00 0.00 5.28
3792 3914 0.614134 GAGTAGAGGGGACAACGGGT 60.614 60.000 0.00 0.00 0.00 5.28
3793 3915 0.614134 AGTAGAGGGGACAACGGGTC 60.614 60.000 1.24 1.24 46.20 4.46
3805 3927 4.796231 CGGGTCGCCCTGTCGAAG 62.796 72.222 12.26 0.00 42.67 3.79
3806 3928 3.379445 GGGTCGCCCTGTCGAAGA 61.379 66.667 7.58 0.00 41.34 2.87
3807 3929 3.644399 GGGTCGCCCTGTCGAAGAC 62.644 68.421 7.58 0.00 46.89 3.01
3818 3940 1.676968 TCGAAGACCACACCCATGG 59.323 57.895 4.14 4.14 46.10 3.66
3819 3941 1.377202 CGAAGACCACACCCATGGG 60.377 63.158 30.23 30.23 44.81 4.00
3822 3944 4.028490 GACCACACCCATGGGCGA 62.028 66.667 31.73 0.00 44.81 5.54
3823 3945 3.338250 ACCACACCCATGGGCGAT 61.338 61.111 31.73 13.70 44.81 4.58
3824 3946 1.978455 GACCACACCCATGGGCGATA 61.978 60.000 31.73 0.00 44.81 2.92
3825 3947 1.227943 CCACACCCATGGGCGATAG 60.228 63.158 31.73 17.26 39.32 2.08
3826 3948 1.227943 CACACCCATGGGCGATAGG 60.228 63.158 31.73 15.16 39.32 2.57
3827 3949 2.431683 CACCCATGGGCGATAGGG 59.568 66.667 31.73 4.59 46.96 3.53
3829 3951 3.250847 CCCATGGGCGATAGGGTT 58.749 61.111 20.41 0.00 36.52 4.11
3830 3952 1.228245 CCCATGGGCGATAGGGTTG 60.228 63.158 20.41 0.00 36.52 3.77
3831 3953 1.531748 CCATGGGCGATAGGGTTGT 59.468 57.895 2.85 0.00 0.00 3.32
3832 3954 0.535102 CCATGGGCGATAGGGTTGTC 60.535 60.000 2.85 0.00 0.00 3.18
3833 3955 0.880278 CATGGGCGATAGGGTTGTCG 60.880 60.000 0.00 0.00 40.43 4.35
3834 3956 2.040009 ATGGGCGATAGGGTTGTCGG 62.040 60.000 0.00 0.00 38.25 4.79
3836 3958 2.185867 GCGATAGGGTTGTCGGCA 59.814 61.111 0.00 0.00 38.25 5.69
3837 3959 1.448893 GCGATAGGGTTGTCGGCAA 60.449 57.895 0.00 0.00 38.25 4.52
3838 3960 0.814010 GCGATAGGGTTGTCGGCAAT 60.814 55.000 5.40 0.00 38.25 3.56
3839 3961 1.539496 GCGATAGGGTTGTCGGCAATA 60.539 52.381 5.40 0.00 38.25 1.90
3840 3962 2.132762 CGATAGGGTTGTCGGCAATAC 58.867 52.381 5.40 1.84 36.92 1.89
3841 3963 2.490991 GATAGGGTTGTCGGCAATACC 58.509 52.381 16.03 16.03 36.92 2.73
3842 3964 1.277579 TAGGGTTGTCGGCAATACCA 58.722 50.000 22.93 10.36 39.03 3.25
3843 3965 0.623723 AGGGTTGTCGGCAATACCAT 59.376 50.000 22.93 10.30 39.03 3.55
3844 3966 1.005450 AGGGTTGTCGGCAATACCATT 59.995 47.619 22.93 5.50 39.03 3.16
3845 3967 1.404035 GGGTTGTCGGCAATACCATTC 59.596 52.381 18.11 0.00 39.03 2.67
3846 3968 2.088423 GGTTGTCGGCAATACCATTCA 58.912 47.619 5.40 0.00 39.03 2.57
3847 3969 2.097466 GGTTGTCGGCAATACCATTCAG 59.903 50.000 5.40 0.00 39.03 3.02
3848 3970 1.378531 TGTCGGCAATACCATTCAGC 58.621 50.000 0.00 0.00 39.03 4.26
3849 3971 1.065491 TGTCGGCAATACCATTCAGCT 60.065 47.619 0.00 0.00 39.03 4.24
3850 3972 1.331756 GTCGGCAATACCATTCAGCTG 59.668 52.381 7.63 7.63 39.03 4.24
3851 3973 1.065491 TCGGCAATACCATTCAGCTGT 60.065 47.619 14.67 0.00 39.03 4.40
3852 3974 2.169561 TCGGCAATACCATTCAGCTGTA 59.830 45.455 14.67 4.08 39.03 2.74
3853 3975 2.287915 CGGCAATACCATTCAGCTGTAC 59.712 50.000 14.67 0.00 39.03 2.90
3854 3976 2.618709 GGCAATACCATTCAGCTGTACC 59.381 50.000 14.67 0.00 38.86 3.34
3855 3977 3.278574 GCAATACCATTCAGCTGTACCA 58.721 45.455 14.67 0.00 0.00 3.25
3856 3978 3.313526 GCAATACCATTCAGCTGTACCAG 59.686 47.826 14.67 2.90 34.12 4.00
3857 3979 3.845781 ATACCATTCAGCTGTACCAGG 57.154 47.619 14.67 12.00 31.21 4.45
3893 4018 0.401738 CAGTGTGGAGACCCAACCAT 59.598 55.000 0.00 0.00 45.59 3.55
4022 4147 3.781307 ACTTATGGAGCCGGCGCA 61.781 61.111 31.51 17.74 37.52 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.527157 TCAGGTTTGATATCACCAAATTTTAGA 57.473 29.630 4.48 0.00 36.14 2.10
22 23 9.793252 CTCAGGTTTGATATCACCAAATTTTAG 57.207 33.333 4.48 0.00 36.14 1.85
23 24 8.250332 GCTCAGGTTTGATATCACCAAATTTTA 58.750 33.333 4.48 0.00 36.14 1.52
24 25 7.038799 AGCTCAGGTTTGATATCACCAAATTTT 60.039 33.333 4.48 0.00 36.14 1.82
25 26 6.438425 AGCTCAGGTTTGATATCACCAAATTT 59.562 34.615 4.48 0.00 36.14 1.82
26 27 5.954150 AGCTCAGGTTTGATATCACCAAATT 59.046 36.000 4.48 0.00 36.14 1.82
27 28 5.513233 AGCTCAGGTTTGATATCACCAAAT 58.487 37.500 4.48 0.00 36.14 2.32
28 29 4.922206 AGCTCAGGTTTGATATCACCAAA 58.078 39.130 4.48 0.00 35.25 3.28
29 30 4.225942 AGAGCTCAGGTTTGATATCACCAA 59.774 41.667 17.77 0.00 35.25 3.67
30 31 3.776969 AGAGCTCAGGTTTGATATCACCA 59.223 43.478 17.77 0.00 35.25 4.17
31 32 4.141846 TGAGAGCTCAGGTTTGATATCACC 60.142 45.833 17.77 4.50 34.14 4.02
32 33 5.016051 TGAGAGCTCAGGTTTGATATCAC 57.984 43.478 17.77 0.00 34.14 3.06
33 34 5.682234 TTGAGAGCTCAGGTTTGATATCA 57.318 39.130 17.77 0.00 41.13 2.15
34 35 6.523840 AGATTGAGAGCTCAGGTTTGATATC 58.476 40.000 17.77 0.68 41.13 1.63
35 36 6.497624 AGATTGAGAGCTCAGGTTTGATAT 57.502 37.500 17.77 0.00 41.13 1.63
36 37 5.946942 AGATTGAGAGCTCAGGTTTGATA 57.053 39.130 17.77 0.00 41.13 2.15
37 38 4.840716 AGATTGAGAGCTCAGGTTTGAT 57.159 40.909 17.77 0.00 41.13 2.57
38 39 4.081420 GGTAGATTGAGAGCTCAGGTTTGA 60.081 45.833 17.77 0.00 41.13 2.69
39 40 4.187694 GGTAGATTGAGAGCTCAGGTTTG 58.812 47.826 17.77 0.00 41.13 2.93
40 41 3.198853 GGGTAGATTGAGAGCTCAGGTTT 59.801 47.826 17.77 0.00 41.13 3.27
41 42 2.769095 GGGTAGATTGAGAGCTCAGGTT 59.231 50.000 17.77 0.00 41.13 3.50
42 43 2.023501 AGGGTAGATTGAGAGCTCAGGT 60.024 50.000 17.77 0.00 41.13 4.00
43 44 2.364970 CAGGGTAGATTGAGAGCTCAGG 59.635 54.545 17.77 0.00 41.13 3.86
44 45 3.030291 ACAGGGTAGATTGAGAGCTCAG 58.970 50.000 17.77 0.00 41.13 3.35
45 46 2.762887 CACAGGGTAGATTGAGAGCTCA 59.237 50.000 17.77 0.00 37.91 4.26
46 47 2.763448 ACACAGGGTAGATTGAGAGCTC 59.237 50.000 5.27 5.27 0.00 4.09
47 48 2.499289 CACACAGGGTAGATTGAGAGCT 59.501 50.000 0.00 0.00 0.00 4.09
48 49 2.497675 TCACACAGGGTAGATTGAGAGC 59.502 50.000 0.00 0.00 0.00 4.09
49 50 4.808414 TTCACACAGGGTAGATTGAGAG 57.192 45.455 0.00 0.00 0.00 3.20
50 51 5.762179 ATTTCACACAGGGTAGATTGAGA 57.238 39.130 0.00 0.00 0.00 3.27
51 52 6.402550 CGAAATTTCACACAGGGTAGATTGAG 60.403 42.308 17.99 0.00 0.00 3.02
52 53 5.411361 CGAAATTTCACACAGGGTAGATTGA 59.589 40.000 17.99 0.00 0.00 2.57
53 54 5.181245 ACGAAATTTCACACAGGGTAGATTG 59.819 40.000 17.99 0.00 0.00 2.67
54 55 5.181245 CACGAAATTTCACACAGGGTAGATT 59.819 40.000 17.99 0.00 0.00 2.40
55 56 4.695455 CACGAAATTTCACACAGGGTAGAT 59.305 41.667 17.99 0.00 0.00 1.98
56 57 4.062293 CACGAAATTTCACACAGGGTAGA 58.938 43.478 17.99 0.00 0.00 2.59
57 58 4.062293 TCACGAAATTTCACACAGGGTAG 58.938 43.478 17.99 0.54 0.00 3.18
58 59 4.074627 TCACGAAATTTCACACAGGGTA 57.925 40.909 17.99 0.00 0.00 3.69
59 60 2.925724 TCACGAAATTTCACACAGGGT 58.074 42.857 17.99 3.21 0.00 4.34
60 61 3.980646 TTCACGAAATTTCACACAGGG 57.019 42.857 17.99 2.71 0.00 4.45
81 82 5.163794 CGCAGATACGTTTCCTGGTATTTTT 60.164 40.000 0.00 0.00 29.86 1.94
82 83 4.331717 CGCAGATACGTTTCCTGGTATTTT 59.668 41.667 0.00 0.00 29.86 1.82
83 84 3.869246 CGCAGATACGTTTCCTGGTATTT 59.131 43.478 0.00 0.00 29.86 1.40
84 85 3.454375 CGCAGATACGTTTCCTGGTATT 58.546 45.455 0.00 0.00 29.86 1.89
85 86 2.223971 CCGCAGATACGTTTCCTGGTAT 60.224 50.000 0.00 0.00 32.27 2.73
86 87 1.135527 CCGCAGATACGTTTCCTGGTA 59.864 52.381 0.00 0.00 0.00 3.25
87 88 0.108329 CCGCAGATACGTTTCCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
88 89 1.429148 GCCGCAGATACGTTTCCTGG 61.429 60.000 0.00 0.00 0.00 4.45
89 90 1.752501 CGCCGCAGATACGTTTCCTG 61.753 60.000 0.00 0.00 0.00 3.86
90 91 1.518572 CGCCGCAGATACGTTTCCT 60.519 57.895 0.00 0.00 0.00 3.36
91 92 1.079875 TTCGCCGCAGATACGTTTCC 61.080 55.000 0.00 0.00 0.00 3.13
92 93 0.297820 CTTCGCCGCAGATACGTTTC 59.702 55.000 0.00 0.00 0.00 2.78
93 94 1.082117 CCTTCGCCGCAGATACGTTT 61.082 55.000 0.00 0.00 0.00 3.60
94 95 1.518572 CCTTCGCCGCAGATACGTT 60.519 57.895 0.00 0.00 0.00 3.99
95 96 1.940883 TTCCTTCGCCGCAGATACGT 61.941 55.000 0.00 0.00 0.00 3.57
96 97 0.804544 TTTCCTTCGCCGCAGATACG 60.805 55.000 0.00 0.00 0.00 3.06
97 98 1.583054 ATTTCCTTCGCCGCAGATAC 58.417 50.000 0.00 0.00 0.00 2.24
98 99 2.547218 GGTATTTCCTTCGCCGCAGATA 60.547 50.000 0.00 0.00 0.00 1.98
99 100 1.583054 GTATTTCCTTCGCCGCAGAT 58.417 50.000 0.00 0.00 0.00 2.90
100 101 0.461339 GGTATTTCCTTCGCCGCAGA 60.461 55.000 0.00 0.00 0.00 4.26
101 102 1.762222 CGGTATTTCCTTCGCCGCAG 61.762 60.000 0.00 0.00 35.90 5.18
102 103 1.812093 CGGTATTTCCTTCGCCGCA 60.812 57.895 0.00 0.00 35.90 5.69
103 104 1.759293 GACGGTATTTCCTTCGCCGC 61.759 60.000 0.00 0.00 45.53 6.53
104 105 1.149964 GGACGGTATTTCCTTCGCCG 61.150 60.000 0.00 0.00 46.83 6.46
105 106 1.149964 CGGACGGTATTTCCTTCGCC 61.150 60.000 0.00 0.00 35.60 5.54
106 107 0.179129 TCGGACGGTATTTCCTTCGC 60.179 55.000 0.00 0.00 35.60 4.70
107 108 1.922545 GTTCGGACGGTATTTCCTTCG 59.077 52.381 0.00 0.00 35.60 3.79
108 109 2.963432 TGTTCGGACGGTATTTCCTTC 58.037 47.619 0.00 0.00 34.22 3.46
109 110 3.405823 TTGTTCGGACGGTATTTCCTT 57.594 42.857 0.00 0.00 0.00 3.36
110 111 3.405823 TTTGTTCGGACGGTATTTCCT 57.594 42.857 0.00 0.00 0.00 3.36
111 112 4.486574 TTTTTGTTCGGACGGTATTTCC 57.513 40.909 0.00 0.00 0.00 3.13
112 113 5.090757 GGATTTTTGTTCGGACGGTATTTC 58.909 41.667 0.00 0.00 0.00 2.17
113 114 4.519730 TGGATTTTTGTTCGGACGGTATTT 59.480 37.500 0.00 0.00 0.00 1.40
114 115 4.073549 TGGATTTTTGTTCGGACGGTATT 58.926 39.130 0.00 0.00 0.00 1.89
115 116 3.677190 TGGATTTTTGTTCGGACGGTAT 58.323 40.909 0.00 0.00 0.00 2.73
116 117 3.123157 TGGATTTTTGTTCGGACGGTA 57.877 42.857 0.00 0.00 0.00 4.02
117 118 1.970092 TGGATTTTTGTTCGGACGGT 58.030 45.000 0.00 0.00 0.00 4.83
118 119 2.159435 GGATGGATTTTTGTTCGGACGG 60.159 50.000 0.00 0.00 0.00 4.79
119 120 2.486203 TGGATGGATTTTTGTTCGGACG 59.514 45.455 0.00 0.00 0.00 4.79
120 121 4.513198 TTGGATGGATTTTTGTTCGGAC 57.487 40.909 0.00 0.00 0.00 4.79
121 122 5.011533 ACATTTGGATGGATTTTTGTTCGGA 59.988 36.000 0.00 0.00 37.60 4.55
122 123 5.237048 ACATTTGGATGGATTTTTGTTCGG 58.763 37.500 0.00 0.00 37.60 4.30
123 124 6.783892 AACATTTGGATGGATTTTTGTTCG 57.216 33.333 0.00 0.00 37.60 3.95
154 155 8.113675 GCAAAAAGACAAAAATTTCGTATGTGT 58.886 29.630 0.00 0.00 0.00 3.72
155 156 7.582319 GGCAAAAAGACAAAAATTTCGTATGTG 59.418 33.333 0.00 0.00 0.00 3.21
156 157 7.278868 TGGCAAAAAGACAAAAATTTCGTATGT 59.721 29.630 0.00 0.00 26.55 2.29
157 158 7.582319 GTGGCAAAAAGACAAAAATTTCGTATG 59.418 33.333 0.00 0.00 36.65 2.39
158 159 7.278868 TGTGGCAAAAAGACAAAAATTTCGTAT 59.721 29.630 0.00 0.00 36.65 3.06
159 160 6.590292 TGTGGCAAAAAGACAAAAATTTCGTA 59.410 30.769 0.00 0.00 36.65 3.43
160 161 5.409826 TGTGGCAAAAAGACAAAAATTTCGT 59.590 32.000 0.00 0.00 36.65 3.85
161 162 5.862811 TGTGGCAAAAAGACAAAAATTTCG 58.137 33.333 0.00 0.00 36.65 3.46
166 167 5.397326 GCATTTGTGGCAAAAAGACAAAAA 58.603 33.333 9.04 0.00 46.37 1.94
167 168 4.436584 CGCATTTGTGGCAAAAAGACAAAA 60.437 37.500 9.04 0.00 41.55 2.44
168 169 3.063180 CGCATTTGTGGCAAAAAGACAAA 59.937 39.130 9.04 5.16 42.22 2.83
169 170 2.606725 CGCATTTGTGGCAAAAAGACAA 59.393 40.909 9.04 0.00 36.65 3.18
170 171 2.200067 CGCATTTGTGGCAAAAAGACA 58.800 42.857 9.04 0.00 0.00 3.41
171 172 2.200899 ACGCATTTGTGGCAAAAAGAC 58.799 42.857 9.04 2.38 0.00 3.01
172 173 2.593346 ACGCATTTGTGGCAAAAAGA 57.407 40.000 9.04 0.00 0.00 2.52
173 174 3.545822 GGAAACGCATTTGTGGCAAAAAG 60.546 43.478 9.04 2.61 0.00 2.27
174 175 2.352960 GGAAACGCATTTGTGGCAAAAA 59.647 40.909 5.10 5.10 0.00 1.94
175 176 1.936547 GGAAACGCATTTGTGGCAAAA 59.063 42.857 0.00 0.00 0.00 2.44
176 177 1.137872 AGGAAACGCATTTGTGGCAAA 59.862 42.857 0.00 0.00 0.00 3.68
177 178 0.749649 AGGAAACGCATTTGTGGCAA 59.250 45.000 0.00 0.00 0.00 4.52
178 179 0.031857 CAGGAAACGCATTTGTGGCA 59.968 50.000 0.00 0.00 0.00 4.92
179 180 0.667184 CCAGGAAACGCATTTGTGGC 60.667 55.000 0.00 0.00 0.00 5.01
180 181 0.673437 ACCAGGAAACGCATTTGTGG 59.327 50.000 0.00 2.44 35.72 4.17
181 182 3.848272 ATACCAGGAAACGCATTTGTG 57.152 42.857 0.00 0.00 0.00 3.33
182 183 4.864704 AAATACCAGGAAACGCATTTGT 57.135 36.364 0.00 0.00 0.00 2.83
183 184 5.469479 AGAAAATACCAGGAAACGCATTTG 58.531 37.500 0.00 0.00 0.00 2.32
184 185 5.242838 TGAGAAAATACCAGGAAACGCATTT 59.757 36.000 0.00 0.00 0.00 2.32
185 186 4.764823 TGAGAAAATACCAGGAAACGCATT 59.235 37.500 0.00 0.00 0.00 3.56
186 187 4.331968 TGAGAAAATACCAGGAAACGCAT 58.668 39.130 0.00 0.00 0.00 4.73
187 188 3.745799 TGAGAAAATACCAGGAAACGCA 58.254 40.909 0.00 0.00 0.00 5.24
188 189 4.394920 TCATGAGAAAATACCAGGAAACGC 59.605 41.667 0.00 0.00 0.00 4.84
189 190 6.494893 TTCATGAGAAAATACCAGGAAACG 57.505 37.500 0.00 0.00 29.34 3.60
190 191 9.710900 AAATTTCATGAGAAAATACCAGGAAAC 57.289 29.630 0.00 0.00 46.06 2.78
191 192 9.927668 GAAATTTCATGAGAAAATACCAGGAAA 57.072 29.630 13.40 0.00 46.06 3.13
192 193 9.087871 TGAAATTTCATGAGAAAATACCAGGAA 57.912 29.630 16.91 0.00 46.06 3.36
193 194 8.522830 GTGAAATTTCATGAGAAAATACCAGGA 58.477 33.333 23.05 0.00 46.06 3.86
194 195 8.306038 TGTGAAATTTCATGAGAAAATACCAGG 58.694 33.333 23.05 0.00 46.06 4.45
195 196 9.132521 GTGTGAAATTTCATGAGAAAATACCAG 57.867 33.333 23.05 0.00 46.06 4.00
196 197 7.807433 CGTGTGAAATTTCATGAGAAAATACCA 59.193 33.333 23.05 9.43 46.06 3.25
197 198 7.273381 CCGTGTGAAATTTCATGAGAAAATACC 59.727 37.037 23.05 7.05 46.06 2.73
198 199 7.273381 CCCGTGTGAAATTTCATGAGAAAATAC 59.727 37.037 23.05 7.52 46.06 1.89
199 200 7.175816 TCCCGTGTGAAATTTCATGAGAAAATA 59.824 33.333 23.05 2.74 46.06 1.40
200 201 6.015519 TCCCGTGTGAAATTTCATGAGAAAAT 60.016 34.615 23.05 0.00 46.06 1.82
201 202 5.300539 TCCCGTGTGAAATTTCATGAGAAAA 59.699 36.000 23.05 5.27 46.06 2.29
202 203 4.824537 TCCCGTGTGAAATTTCATGAGAAA 59.175 37.500 23.05 6.64 46.90 2.52
203 204 4.393834 TCCCGTGTGAAATTTCATGAGAA 58.606 39.130 23.05 6.17 39.73 2.87
204 205 4.002982 CTCCCGTGTGAAATTTCATGAGA 58.997 43.478 23.05 14.22 39.73 3.27
205 206 3.753272 ACTCCCGTGTGAAATTTCATGAG 59.247 43.478 23.05 21.58 39.73 2.90
206 207 3.750371 ACTCCCGTGTGAAATTTCATGA 58.250 40.909 23.05 10.91 39.73 3.07
207 208 4.935205 TCTACTCCCGTGTGAAATTTCATG 59.065 41.667 23.05 15.42 39.73 3.07
208 209 5.160607 TCTACTCCCGTGTGAAATTTCAT 57.839 39.130 23.05 7.89 39.73 2.57
209 210 4.610605 TCTACTCCCGTGTGAAATTTCA 57.389 40.909 16.91 16.91 34.20 2.69
210 211 5.163754 CCAATCTACTCCCGTGTGAAATTTC 60.164 44.000 11.41 11.41 0.00 2.17
211 212 4.700213 CCAATCTACTCCCGTGTGAAATTT 59.300 41.667 0.00 0.00 0.00 1.82
212 213 4.261801 CCAATCTACTCCCGTGTGAAATT 58.738 43.478 0.00 0.00 0.00 1.82
213 214 3.370527 CCCAATCTACTCCCGTGTGAAAT 60.371 47.826 0.00 0.00 0.00 2.17
214 215 2.027561 CCCAATCTACTCCCGTGTGAAA 60.028 50.000 0.00 0.00 0.00 2.69
215 216 1.553248 CCCAATCTACTCCCGTGTGAA 59.447 52.381 0.00 0.00 0.00 3.18
216 217 1.191535 CCCAATCTACTCCCGTGTGA 58.808 55.000 0.00 0.00 0.00 3.58
217 218 1.191535 TCCCAATCTACTCCCGTGTG 58.808 55.000 0.00 0.00 0.00 3.82
218 219 1.553704 GTTCCCAATCTACTCCCGTGT 59.446 52.381 0.00 0.00 0.00 4.49
219 220 1.134491 GGTTCCCAATCTACTCCCGTG 60.134 57.143 0.00 0.00 0.00 4.94
220 221 1.201424 GGTTCCCAATCTACTCCCGT 58.799 55.000 0.00 0.00 0.00 5.28
221 222 0.468648 GGGTTCCCAATCTACTCCCG 59.531 60.000 2.59 0.00 0.00 5.14
222 223 0.468648 CGGGTTCCCAATCTACTCCC 59.531 60.000 8.70 0.00 0.00 4.30
223 224 0.468648 CCGGGTTCCCAATCTACTCC 59.531 60.000 8.70 0.00 0.00 3.85
224 225 0.468648 CCCGGGTTCCCAATCTACTC 59.531 60.000 14.18 0.00 0.00 2.59
225 226 0.253020 ACCCGGGTTCCCAATCTACT 60.253 55.000 24.16 0.00 0.00 2.57
226 227 0.622136 AACCCGGGTTCCCAATCTAC 59.378 55.000 33.74 0.00 32.09 2.59
227 228 1.004979 CAAACCCGGGTTCCCAATCTA 59.995 52.381 38.26 0.00 37.35 1.98
228 229 0.251608 CAAACCCGGGTTCCCAATCT 60.252 55.000 38.26 19.00 37.35 2.40
229 230 0.251430 TCAAACCCGGGTTCCCAATC 60.251 55.000 38.26 0.00 37.35 2.67
230 231 0.411848 ATCAAACCCGGGTTCCCAAT 59.588 50.000 38.26 24.19 37.35 3.16
231 232 1.073931 TATCAAACCCGGGTTCCCAA 58.926 50.000 38.26 23.11 37.35 4.12
232 233 1.213430 GATATCAAACCCGGGTTCCCA 59.787 52.381 38.26 24.45 37.35 4.37
233 234 1.493446 AGATATCAAACCCGGGTTCCC 59.507 52.381 38.26 21.67 37.35 3.97
234 235 2.171870 TGAGATATCAAACCCGGGTTCC 59.828 50.000 38.26 21.34 37.35 3.62
235 236 3.553828 TGAGATATCAAACCCGGGTTC 57.446 47.619 38.26 24.75 37.35 3.62
236 237 4.310022 TTTGAGATATCAAACCCGGGTT 57.690 40.909 33.74 33.74 40.45 4.11
237 238 4.310022 TTTTGAGATATCAAACCCGGGT 57.690 40.909 24.16 24.16 39.06 5.28
238 239 5.133221 AGATTTTGAGATATCAAACCCGGG 58.867 41.667 22.25 22.25 39.06 5.73
239 240 5.822519 TGAGATTTTGAGATATCAAACCCGG 59.177 40.000 14.84 0.00 39.06 5.73
240 241 6.763135 TCTGAGATTTTGAGATATCAAACCCG 59.237 38.462 14.84 2.90 39.06 5.28
241 242 7.772757 AGTCTGAGATTTTGAGATATCAAACCC 59.227 37.037 14.84 9.65 39.06 4.11
242 243 8.729805 AGTCTGAGATTTTGAGATATCAAACC 57.270 34.615 14.84 9.97 39.06 3.27
300 301 8.107095 GCTCCATACCCCTATATGAACATTAAA 58.893 37.037 0.00 0.00 34.94 1.52
301 302 7.238723 TGCTCCATACCCCTATATGAACATTAA 59.761 37.037 0.00 0.00 34.94 1.40
302 303 6.733334 TGCTCCATACCCCTATATGAACATTA 59.267 38.462 0.00 0.00 34.94 1.90
303 304 5.551583 TGCTCCATACCCCTATATGAACATT 59.448 40.000 0.00 0.00 34.94 2.71
304 305 5.100811 TGCTCCATACCCCTATATGAACAT 58.899 41.667 0.00 0.00 34.94 2.71
305 306 4.498493 TGCTCCATACCCCTATATGAACA 58.502 43.478 0.00 0.00 34.94 3.18
306 307 5.396884 GGATGCTCCATACCCCTATATGAAC 60.397 48.000 0.00 0.00 36.28 3.18
307 308 4.721776 GGATGCTCCATACCCCTATATGAA 59.278 45.833 0.00 0.00 36.28 2.57
308 309 4.298626 GGATGCTCCATACCCCTATATGA 58.701 47.826 0.00 0.00 36.28 2.15
309 310 3.070159 CGGATGCTCCATACCCCTATATG 59.930 52.174 3.57 0.00 35.91 1.78
310 311 3.309296 CGGATGCTCCATACCCCTATAT 58.691 50.000 3.57 0.00 35.91 0.86
311 312 2.625883 CCGGATGCTCCATACCCCTATA 60.626 54.545 0.00 0.00 35.91 1.31
312 313 1.573108 CGGATGCTCCATACCCCTAT 58.427 55.000 3.57 0.00 35.91 2.57
313 314 0.544357 CCGGATGCTCCATACCCCTA 60.544 60.000 0.00 0.00 35.91 3.53
314 315 1.843376 CCGGATGCTCCATACCCCT 60.843 63.158 0.00 0.00 35.91 4.79
315 316 2.750350 CCGGATGCTCCATACCCC 59.250 66.667 0.00 0.00 35.91 4.95
316 317 2.147387 ACCCGGATGCTCCATACCC 61.147 63.158 0.73 0.00 35.91 3.69
317 318 1.071471 CACCCGGATGCTCCATACC 59.929 63.158 0.73 0.00 35.91 2.73
318 319 0.180406 AACACCCGGATGCTCCATAC 59.820 55.000 0.73 0.00 35.91 2.39
319 320 1.414919 GTAACACCCGGATGCTCCATA 59.585 52.381 0.73 0.00 35.91 2.74
320 321 0.180406 GTAACACCCGGATGCTCCAT 59.820 55.000 0.73 0.00 35.91 3.41
321 322 1.195442 TGTAACACCCGGATGCTCCA 61.195 55.000 0.73 0.00 35.91 3.86
322 323 0.035820 TTGTAACACCCGGATGCTCC 60.036 55.000 0.73 0.00 0.00 4.70
323 324 1.816074 TTTGTAACACCCGGATGCTC 58.184 50.000 0.73 0.00 0.00 4.26
324 325 2.365582 GATTTGTAACACCCGGATGCT 58.634 47.619 0.73 0.00 0.00 3.79
325 326 1.404035 GGATTTGTAACACCCGGATGC 59.596 52.381 0.73 0.00 0.00 3.91
326 327 2.422127 GTGGATTTGTAACACCCGGATG 59.578 50.000 0.73 0.00 0.00 3.51
327 328 2.307686 AGTGGATTTGTAACACCCGGAT 59.692 45.455 0.73 0.00 35.79 4.18
328 329 1.700739 AGTGGATTTGTAACACCCGGA 59.299 47.619 0.73 0.00 35.79 5.14
329 330 2.194201 AGTGGATTTGTAACACCCGG 57.806 50.000 0.00 0.00 35.79 5.73
330 331 2.486592 GGAAGTGGATTTGTAACACCCG 59.513 50.000 0.00 0.00 35.79 5.28
331 332 2.823747 GGGAAGTGGATTTGTAACACCC 59.176 50.000 0.00 0.00 35.79 4.61
332 333 3.763057 AGGGAAGTGGATTTGTAACACC 58.237 45.455 0.00 0.00 35.79 4.16
333 334 5.944007 ACATAGGGAAGTGGATTTGTAACAC 59.056 40.000 0.00 0.00 35.43 3.32
334 335 6.134535 ACATAGGGAAGTGGATTTGTAACA 57.865 37.500 0.00 0.00 0.00 2.41
335 336 6.657541 TCAACATAGGGAAGTGGATTTGTAAC 59.342 38.462 0.00 0.00 0.00 2.50
336 337 6.657541 GTCAACATAGGGAAGTGGATTTGTAA 59.342 38.462 0.00 0.00 0.00 2.41
337 338 6.177610 GTCAACATAGGGAAGTGGATTTGTA 58.822 40.000 0.00 0.00 0.00 2.41
338 339 5.010282 GTCAACATAGGGAAGTGGATTTGT 58.990 41.667 0.00 0.00 0.00 2.83
339 340 5.009631 TGTCAACATAGGGAAGTGGATTTG 58.990 41.667 0.00 0.00 0.00 2.32
340 341 5.255397 TGTCAACATAGGGAAGTGGATTT 57.745 39.130 0.00 0.00 0.00 2.17
341 342 4.927267 TGTCAACATAGGGAAGTGGATT 57.073 40.909 0.00 0.00 0.00 3.01
342 343 4.785301 CATGTCAACATAGGGAAGTGGAT 58.215 43.478 0.00 0.00 34.26 3.41
343 344 3.622206 GCATGTCAACATAGGGAAGTGGA 60.622 47.826 0.00 0.00 34.26 4.02
344 345 2.684881 GCATGTCAACATAGGGAAGTGG 59.315 50.000 0.00 0.00 34.26 4.00
345 346 3.346315 TGCATGTCAACATAGGGAAGTG 58.654 45.455 0.00 0.00 34.26 3.16
346 347 3.719268 TGCATGTCAACATAGGGAAGT 57.281 42.857 0.00 0.00 34.26 3.01
379 380 5.512753 TTGCATGTTGAAGTGAGCTTTTA 57.487 34.783 0.00 0.00 34.61 1.52
529 534 9.857656 AATGAGATTTGGTTGTAGATACATGAT 57.142 29.630 0.00 0.00 35.89 2.45
592 600 8.682936 AAGTCACTTTAAGATTCATGTGAACT 57.317 30.769 0.00 0.00 36.80 3.01
595 603 9.219603 CCTTAAGTCACTTTAAGATTCATGTGA 57.780 33.333 0.00 0.00 41.17 3.58
596 604 7.965107 GCCTTAAGTCACTTTAAGATTCATGTG 59.035 37.037 0.00 0.00 41.17 3.21
597 605 7.885399 AGCCTTAAGTCACTTTAAGATTCATGT 59.115 33.333 0.00 0.00 41.17 3.21
632 640 3.906218 TCACCTATGATCTGCAGGCTAAT 59.094 43.478 15.13 0.00 32.31 1.73
763 773 6.450845 TGCAATATTTCAAACTTTGCTTCG 57.549 33.333 16.01 0.00 42.34 3.79
764 774 8.479829 GTTTGCAATATTTCAAACTTTGCTTC 57.520 30.769 26.44 6.98 45.01 3.86
903 913 2.249413 CTTCTGGAGCATGCCGGAGT 62.249 60.000 15.66 0.00 43.86 3.85
908 918 1.101331 CCTTTCTTCTGGAGCATGCC 58.899 55.000 15.66 5.80 0.00 4.40
909 919 1.101331 CCCTTTCTTCTGGAGCATGC 58.899 55.000 10.51 10.51 0.00 4.06
910 920 2.290514 TGTCCCTTTCTTCTGGAGCATG 60.291 50.000 0.00 0.00 0.00 4.06
911 921 1.988107 TGTCCCTTTCTTCTGGAGCAT 59.012 47.619 0.00 0.00 0.00 3.79
912 922 1.349026 CTGTCCCTTTCTTCTGGAGCA 59.651 52.381 0.00 0.00 0.00 4.26
917 927 0.674895 CCGGCTGTCCCTTTCTTCTG 60.675 60.000 0.00 0.00 0.00 3.02
950 960 1.281899 GCACGTCTATGGTGAGCTTC 58.718 55.000 0.00 0.00 37.60 3.86
1074 1088 1.595058 GGGAGGAGGAGGAGGAGGAA 61.595 65.000 0.00 0.00 0.00 3.36
1075 1089 2.015726 GGGAGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
1076 1090 2.612251 GGGAGGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
1077 1091 2.612251 GGGGAGGAGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
1078 1092 3.036959 GGGGGAGGAGGAGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1079 1093 3.039526 AGGGGGAGGAGGAGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
1080 1094 2.612251 GAGGGGGAGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
1081 1095 2.237751 TAGGAGGGGGAGGAGGAGGA 62.238 65.000 0.00 0.00 0.00 3.71
1082 1096 1.705450 TAGGAGGGGGAGGAGGAGG 60.705 68.421 0.00 0.00 0.00 4.30
1083 1097 1.544703 GTAGGAGGGGGAGGAGGAG 59.455 68.421 0.00 0.00 0.00 3.69
1084 1098 2.019272 GGTAGGAGGGGGAGGAGGA 61.019 68.421 0.00 0.00 0.00 3.71
1085 1099 2.615773 GGTAGGAGGGGGAGGAGG 59.384 72.222 0.00 0.00 0.00 4.30
1089 1103 1.757340 GTGTCGGTAGGAGGGGGAG 60.757 68.421 0.00 0.00 0.00 4.30
1325 1339 1.102154 TGAAACCACAACACAGGCAG 58.898 50.000 0.00 0.00 0.00 4.85
1327 1341 2.888834 AATGAAACCACAACACAGGC 57.111 45.000 0.00 0.00 0.00 4.85
1329 1343 3.371168 CCGAAATGAAACCACAACACAG 58.629 45.455 0.00 0.00 0.00 3.66
1431 1445 0.887836 AGAGCGTGTAGTCCGTCACA 60.888 55.000 0.00 0.00 34.66 3.58
1536 1550 1.227380 ATCGCAGGCTTGGACGATC 60.227 57.895 5.69 0.00 41.06 3.69
1590 1608 9.013490 CAACTACAAAACTGAAACAATGAGAAG 57.987 33.333 0.00 0.00 0.00 2.85
1591 1609 8.519526 ACAACTACAAAACTGAAACAATGAGAA 58.480 29.630 0.00 0.00 0.00 2.87
1592 1610 8.050778 ACAACTACAAAACTGAAACAATGAGA 57.949 30.769 0.00 0.00 0.00 3.27
1593 1611 8.687824 AACAACTACAAAACTGAAACAATGAG 57.312 30.769 0.00 0.00 0.00 2.90
1616 1634 4.612033 CGACCGGAACAATCTAACCAAAAC 60.612 45.833 9.46 0.00 0.00 2.43
1618 1636 3.068560 CGACCGGAACAATCTAACCAAA 58.931 45.455 9.46 0.00 0.00 3.28
1621 1639 2.375173 ACGACCGGAACAATCTAACC 57.625 50.000 9.46 0.00 0.00 2.85
1623 1641 3.389925 ACAACGACCGGAACAATCTAA 57.610 42.857 9.46 0.00 0.00 2.10
1634 1657 4.655440 TCACATGAATTAACAACGACCG 57.345 40.909 0.00 0.00 0.00 4.79
1660 1683 4.043200 GCCTTGCAACCAGGCGAC 62.043 66.667 12.02 0.00 39.06 5.19
1827 1850 7.369803 AGCACAGAATTTAACATACAGACTG 57.630 36.000 0.00 0.00 0.00 3.51
1868 1891 4.653868 AGGTATACCATCCGTGACTCTAG 58.346 47.826 23.87 0.00 38.89 2.43
1874 1897 5.364446 ACAACATTAGGTATACCATCCGTGA 59.636 40.000 23.87 0.00 38.89 4.35
2269 2292 1.674441 AGAACATGCATGATTCCAGCG 59.326 47.619 32.75 3.35 0.00 5.18
2398 2421 1.951130 CACCAGGCGATCGGATTCG 60.951 63.158 18.30 0.00 41.99 3.34
2455 2478 6.032377 CAGCAATACCTGATATGCCTTAGCA 61.032 44.000 0.00 0.00 43.78 3.49
2553 2576 0.242017 GCATGCACAACTTCCCAGAC 59.758 55.000 14.21 0.00 0.00 3.51
2660 2683 2.426024 CACTATTGCTTGGCTGCTCATT 59.574 45.455 0.00 0.00 0.00 2.57
3018 3041 7.498239 GGGTTAACCATGTCTAAAAGGAGATAC 59.502 40.741 25.71 0.00 39.85 2.24
3081 3104 2.816087 GCCTACATACATTGATGCTGGG 59.184 50.000 0.00 0.00 0.00 4.45
3163 3188 7.122948 CAGGGTAGATAAGAACACAAGTACTCT 59.877 40.741 0.00 0.00 0.00 3.24
3254 3279 7.598493 CCCTCACAAACATATTTTACAAAGGTG 59.402 37.037 0.00 0.00 0.00 4.00
3491 3528 4.565652 GGAGAGCCAAGGTTGAGAACATAA 60.566 45.833 0.00 0.00 0.00 1.90
3768 3890 2.169330 GTTGTCCCCTCTACTCTTCGT 58.831 52.381 0.00 0.00 0.00 3.85
3769 3891 1.132643 CGTTGTCCCCTCTACTCTTCG 59.867 57.143 0.00 0.00 0.00 3.79
3770 3892 1.477295 CCGTTGTCCCCTCTACTCTTC 59.523 57.143 0.00 0.00 0.00 2.87
3772 3894 0.324460 CCCGTTGTCCCCTCTACTCT 60.324 60.000 0.00 0.00 0.00 3.24
3773 3895 0.614134 ACCCGTTGTCCCCTCTACTC 60.614 60.000 0.00 0.00 0.00 2.59
3774 3896 0.614134 GACCCGTTGTCCCCTCTACT 60.614 60.000 0.00 0.00 38.09 2.57
3775 3897 1.895966 GACCCGTTGTCCCCTCTAC 59.104 63.158 0.00 0.00 38.09 2.59
3776 3898 1.679977 CGACCCGTTGTCCCCTCTA 60.680 63.158 0.00 0.00 41.18 2.43
3777 3899 2.995574 CGACCCGTTGTCCCCTCT 60.996 66.667 0.00 0.00 41.18 3.69
3778 3900 4.754667 GCGACCCGTTGTCCCCTC 62.755 72.222 0.00 0.00 41.18 4.30
3791 3913 2.126031 GGTCTTCGACAGGGCGAC 60.126 66.667 0.00 0.00 40.42 5.19
3792 3914 2.599281 TGGTCTTCGACAGGGCGA 60.599 61.111 0.00 0.00 38.72 5.54
3793 3915 2.432628 GTGGTCTTCGACAGGGCG 60.433 66.667 0.00 0.00 33.68 6.13
3794 3916 1.668151 GTGTGGTCTTCGACAGGGC 60.668 63.158 0.00 0.00 33.29 5.19
3795 3917 1.004918 GGTGTGGTCTTCGACAGGG 60.005 63.158 0.00 0.00 33.29 4.45
3796 3918 1.004918 GGGTGTGGTCTTCGACAGG 60.005 63.158 0.00 0.00 33.29 4.00
3797 3919 0.321671 ATGGGTGTGGTCTTCGACAG 59.678 55.000 0.00 0.00 33.29 3.51
3798 3920 0.034756 CATGGGTGTGGTCTTCGACA 59.965 55.000 0.00 0.00 33.68 4.35
3799 3921 0.673644 CCATGGGTGTGGTCTTCGAC 60.674 60.000 2.85 0.00 34.46 4.20
3800 3922 1.676968 CCATGGGTGTGGTCTTCGA 59.323 57.895 2.85 0.00 34.46 3.71
3801 3923 1.377202 CCCATGGGTGTGGTCTTCG 60.377 63.158 23.93 0.00 37.57 3.79
3802 3924 1.678970 GCCCATGGGTGTGGTCTTC 60.679 63.158 31.58 8.09 37.57 2.87
3803 3925 2.440599 GCCCATGGGTGTGGTCTT 59.559 61.111 31.58 0.00 37.57 3.01
3804 3926 4.033776 CGCCCATGGGTGTGGTCT 62.034 66.667 32.70 0.00 40.65 3.85
3805 3927 1.978455 TATCGCCCATGGGTGTGGTC 61.978 60.000 37.30 17.66 45.37 4.02
3806 3928 1.983119 CTATCGCCCATGGGTGTGGT 61.983 60.000 37.30 27.02 45.37 4.16
3807 3929 1.227943 CTATCGCCCATGGGTGTGG 60.228 63.158 37.30 24.37 45.37 4.17
3808 3930 1.227943 CCTATCGCCCATGGGTGTG 60.228 63.158 37.30 27.62 45.37 3.82
3809 3931 2.452064 CCCTATCGCCCATGGGTGT 61.452 63.158 37.30 27.51 45.37 4.16
3810 3932 2.431683 CCCTATCGCCCATGGGTG 59.568 66.667 34.77 34.77 46.45 4.61
3812 3934 1.228245 CAACCCTATCGCCCATGGG 60.228 63.158 27.87 27.87 44.89 4.00
3813 3935 0.535102 GACAACCCTATCGCCCATGG 60.535 60.000 4.14 4.14 0.00 3.66
3814 3936 0.880278 CGACAACCCTATCGCCCATG 60.880 60.000 0.00 0.00 0.00 3.66
3815 3937 1.445942 CGACAACCCTATCGCCCAT 59.554 57.895 0.00 0.00 0.00 4.00
3816 3938 2.727392 CCGACAACCCTATCGCCCA 61.727 63.158 0.00 0.00 37.01 5.36
3817 3939 2.108362 CCGACAACCCTATCGCCC 59.892 66.667 0.00 0.00 37.01 6.13
3818 3940 2.588034 GCCGACAACCCTATCGCC 60.588 66.667 0.00 0.00 37.01 5.54
3819 3941 0.814010 ATTGCCGACAACCCTATCGC 60.814 55.000 0.00 0.00 38.99 4.58
3820 3942 2.132762 GTATTGCCGACAACCCTATCG 58.867 52.381 0.00 0.00 38.99 2.92
3821 3943 2.158871 TGGTATTGCCGACAACCCTATC 60.159 50.000 4.11 0.00 38.99 2.08
3822 3944 1.841277 TGGTATTGCCGACAACCCTAT 59.159 47.619 4.11 0.00 38.99 2.57
3823 3945 1.277579 TGGTATTGCCGACAACCCTA 58.722 50.000 4.11 0.00 38.99 3.53
3824 3946 0.623723 ATGGTATTGCCGACAACCCT 59.376 50.000 4.11 0.00 38.99 4.34
3825 3947 1.404035 GAATGGTATTGCCGACAACCC 59.596 52.381 0.00 0.00 38.99 4.11
3826 3948 2.088423 TGAATGGTATTGCCGACAACC 58.912 47.619 0.00 0.00 38.99 3.77
3827 3949 2.477863 GCTGAATGGTATTGCCGACAAC 60.478 50.000 0.00 0.00 38.99 3.32
3828 3950 1.742831 GCTGAATGGTATTGCCGACAA 59.257 47.619 0.00 0.00 41.21 3.18
3829 3951 1.065491 AGCTGAATGGTATTGCCGACA 60.065 47.619 0.00 0.00 41.21 4.35
3830 3952 1.331756 CAGCTGAATGGTATTGCCGAC 59.668 52.381 8.42 0.00 41.21 4.79
3831 3953 1.065491 ACAGCTGAATGGTATTGCCGA 60.065 47.619 23.35 0.00 41.21 5.54
3832 3954 1.382522 ACAGCTGAATGGTATTGCCG 58.617 50.000 23.35 0.00 41.21 5.69
3833 3955 2.618709 GGTACAGCTGAATGGTATTGCC 59.381 50.000 23.35 4.23 37.90 4.52
3834 3956 3.278574 TGGTACAGCTGAATGGTATTGC 58.721 45.455 23.35 0.00 0.00 3.56
3849 3971 1.938585 CACCTCCTCTTCCTGGTACA 58.061 55.000 0.00 0.00 0.00 2.90
3850 3972 0.537653 GCACCTCCTCTTCCTGGTAC 59.462 60.000 0.00 0.00 0.00 3.34
3851 3973 0.116342 TGCACCTCCTCTTCCTGGTA 59.884 55.000 0.00 0.00 0.00 3.25
3852 3974 0.548682 ATGCACCTCCTCTTCCTGGT 60.549 55.000 0.00 0.00 0.00 4.00
3853 3975 1.415659 CTATGCACCTCCTCTTCCTGG 59.584 57.143 0.00 0.00 0.00 4.45
3854 3976 1.202627 GCTATGCACCTCCTCTTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
3855 3977 1.127343 GCTATGCACCTCCTCTTCCT 58.873 55.000 0.00 0.00 0.00 3.36
3856 3978 0.833287 TGCTATGCACCTCCTCTTCC 59.167 55.000 0.00 0.00 31.71 3.46
3857 3979 1.484240 ACTGCTATGCACCTCCTCTTC 59.516 52.381 0.00 0.00 33.79 2.87
3893 4018 1.134098 GGGATTCCCGAGCATCTTTCA 60.134 52.381 5.84 0.00 32.13 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.