Multiple sequence alignment - TraesCS1D01G168200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G168200 chr1D 100.000 3866 0 0 603 4468 240587028 240590893 0.000000e+00 7140.0
1 TraesCS1D01G168200 chr1D 100.000 241 0 0 1 241 240586426 240586666 3.170000e-121 446.0
2 TraesCS1D01G168200 chr1B 96.587 3252 91 10 605 3837 333633941 333630691 0.000000e+00 5373.0
3 TraesCS1D01G168200 chr1B 95.556 180 6 1 3912 4091 333630689 333630512 2.030000e-73 287.0
4 TraesCS1D01G168200 chr1B 83.916 286 25 6 4188 4468 333630479 333630210 2.060000e-63 254.0
5 TraesCS1D01G168200 chr1A 96.518 3245 74 16 605 3820 304996075 304999309 0.000000e+00 5330.0
6 TraesCS1D01G168200 chr1A 95.200 125 6 0 4074 4198 208212527 208212651 9.800000e-47 198.0
7 TraesCS1D01G168200 chr4D 90.854 2810 227 15 854 3654 486099658 486102446 0.000000e+00 3738.0
8 TraesCS1D01G168200 chr4D 89.480 2538 230 18 1132 3649 486319088 486316568 0.000000e+00 3173.0
9 TraesCS1D01G168200 chr4D 88.926 298 19 2 857 1140 486342188 486341891 5.500000e-94 355.0
10 TraesCS1D01G168200 chr4D 89.091 165 13 4 604 763 486099451 486099615 2.730000e-47 200.0
11 TraesCS1D01G168200 chr4D 95.161 124 6 0 4076 4199 55352437 55352560 3.530000e-46 196.0
12 TraesCS1D01G168200 chr4D 90.511 137 13 0 618 754 486342382 486342246 9.870000e-42 182.0
13 TraesCS1D01G168200 chr5A 90.271 2210 201 9 1460 3660 666704985 666707189 0.000000e+00 2878.0
14 TraesCS1D01G168200 chr5A 85.435 666 55 13 644 1309 666703371 666703994 0.000000e+00 654.0
15 TraesCS1D01G168200 chr5A 89.855 69 6 1 3820 3887 223139190 223139258 2.210000e-13 87.9
16 TraesCS1D01G168200 chr4B 95.868 121 5 0 4077 4197 564869465 564869585 3.530000e-46 196.0
17 TraesCS1D01G168200 chr4B 85.556 90 6 5 3820 3904 262872621 262872534 2.210000e-13 87.9
18 TraesCS1D01G168200 chr4B 87.013 77 4 4 3832 3904 193527682 193527608 1.030000e-11 82.4
19 TraesCS1D01G168200 chr3D 91.608 143 11 1 4066 4208 82747971 82748112 3.530000e-46 196.0
20 TraesCS1D01G168200 chr3D 94.915 59 2 1 3829 3887 206968879 206968936 1.710000e-14 91.6
21 TraesCS1D01G168200 chr3D 86.420 81 5 4 3828 3904 582796967 582796889 2.860000e-12 84.2
22 TraesCS1D01G168200 chr4A 92.424 132 9 1 4080 4210 589013609 589013478 2.120000e-43 187.0
23 TraesCS1D01G168200 chr3A 91.241 137 11 1 4073 4208 12239987 12239851 7.630000e-43 185.0
24 TraesCS1D01G168200 chr3A 88.514 148 15 2 4054 4200 623938193 623938339 1.280000e-40 178.0
25 TraesCS1D01G168200 chr2A 93.548 124 8 0 4074 4197 431044790 431044667 7.630000e-43 185.0
26 TraesCS1D01G168200 chr2D 90.580 138 13 0 4060 4197 470676027 470676164 2.740000e-42 183.0
27 TraesCS1D01G168200 chr6A 90.667 75 5 2 3829 3902 412367401 412367474 1.020000e-16 99.0
28 TraesCS1D01G168200 chr6D 92.647 68 3 2 3837 3904 419760075 419760140 3.680000e-16 97.1
29 TraesCS1D01G168200 chr7D 90.909 66 4 1 3837 3902 412155197 412155260 2.210000e-13 87.9
30 TraesCS1D01G168200 chr5D 87.838 74 5 1 3832 3901 69940124 69940051 2.860000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G168200 chr1D 240586426 240590893 4467 False 3793.000000 7140 100.000000 1 4468 2 chr1D.!!$F1 4467
1 TraesCS1D01G168200 chr1B 333630210 333633941 3731 True 1971.333333 5373 92.019667 605 4468 3 chr1B.!!$R1 3863
2 TraesCS1D01G168200 chr1A 304996075 304999309 3234 False 5330.000000 5330 96.518000 605 3820 1 chr1A.!!$F2 3215
3 TraesCS1D01G168200 chr4D 486316568 486319088 2520 True 3173.000000 3173 89.480000 1132 3649 1 chr4D.!!$R1 2517
4 TraesCS1D01G168200 chr4D 486099451 486102446 2995 False 1969.000000 3738 89.972500 604 3654 2 chr4D.!!$F2 3050
5 TraesCS1D01G168200 chr5A 666703371 666707189 3818 False 1766.000000 2878 87.853000 644 3660 2 chr5A.!!$F2 3016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.039180 AATCTTCCCCGACCCAAACC 59.961 55.000 0.0 0.0 0.00 3.27 F
231 232 0.681243 GACCCAAACCCATCTGCTCC 60.681 60.000 0.0 0.0 0.00 4.70 F
1170 1173 1.209747 GAAATTGGGGACTACTCGGCT 59.790 52.381 0.0 0.0 0.00 5.52 F
1335 1340 1.669440 GGTTACCGACCTGACTGCA 59.331 57.895 0.0 0.0 45.55 4.41 F
1383 1388 1.689813 TCGCTGAAGTTGGACAGGTTA 59.310 47.619 0.0 0.0 35.05 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1388 1.561542 AGCCCAGAAACTGAATCCGAT 59.438 47.619 0.00 0.0 32.44 4.18 R
1965 2845 1.742308 TCTCCCTGGCCTTGTTAAGT 58.258 50.000 3.32 0.0 0.00 2.24 R
2880 3770 2.789203 GCGCGACTTACTCAAGCCG 61.789 63.158 12.10 0.0 40.23 5.52 R
3453 4343 7.054491 ACCTTAACGAAACAGTAAGGACTAA 57.946 36.000 14.11 0.0 39.58 2.24 R
3534 4433 7.905265 AGAAGTAGCTACATTATGCATCAGAT 58.095 34.615 25.28 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.599730 TGGAGATGCTCTAATATGGCG 57.400 47.619 0.00 0.00 0.00 5.69
21 22 2.234661 TGGAGATGCTCTAATATGGCGG 59.765 50.000 0.00 0.00 0.00 6.13
22 23 2.497675 GGAGATGCTCTAATATGGCGGA 59.502 50.000 0.00 0.00 0.00 5.54
23 24 3.133721 GGAGATGCTCTAATATGGCGGAT 59.866 47.826 0.00 0.00 0.00 4.18
24 25 4.118410 GAGATGCTCTAATATGGCGGATG 58.882 47.826 0.00 0.00 0.00 3.51
25 26 2.768253 TGCTCTAATATGGCGGATGG 57.232 50.000 0.00 0.00 0.00 3.51
26 27 2.256306 TGCTCTAATATGGCGGATGGA 58.744 47.619 0.00 0.00 0.00 3.41
27 28 2.637382 TGCTCTAATATGGCGGATGGAA 59.363 45.455 0.00 0.00 0.00 3.53
28 29 3.264193 TGCTCTAATATGGCGGATGGAAT 59.736 43.478 0.00 0.00 0.00 3.01
29 30 3.624861 GCTCTAATATGGCGGATGGAATG 59.375 47.826 0.00 0.00 0.00 2.67
30 31 3.609853 TCTAATATGGCGGATGGAATGC 58.390 45.455 0.00 0.00 0.00 3.56
31 32 2.291209 AATATGGCGGATGGAATGCA 57.709 45.000 0.00 0.00 32.20 3.96
32 33 2.519771 ATATGGCGGATGGAATGCAT 57.480 45.000 0.00 0.00 32.20 3.96
33 34 3.650281 ATATGGCGGATGGAATGCATA 57.350 42.857 0.00 0.00 32.20 3.14
34 35 2.519771 ATGGCGGATGGAATGCATAT 57.480 45.000 0.00 0.00 32.20 1.78
35 36 1.825090 TGGCGGATGGAATGCATATC 58.175 50.000 0.00 0.00 32.20 1.63
36 37 1.352017 TGGCGGATGGAATGCATATCT 59.648 47.619 0.00 0.00 32.20 1.98
37 38 2.224843 TGGCGGATGGAATGCATATCTT 60.225 45.455 0.00 0.00 32.20 2.40
38 39 2.821969 GGCGGATGGAATGCATATCTTT 59.178 45.455 0.00 0.00 32.20 2.52
39 40 3.119708 GGCGGATGGAATGCATATCTTTC 60.120 47.826 0.00 0.00 32.20 2.62
40 41 3.503363 GCGGATGGAATGCATATCTTTCA 59.497 43.478 0.00 0.00 32.20 2.69
41 42 4.157289 GCGGATGGAATGCATATCTTTCAT 59.843 41.667 0.00 0.00 32.20 2.57
42 43 5.336213 GCGGATGGAATGCATATCTTTCATT 60.336 40.000 0.00 0.00 32.20 2.57
43 44 6.320171 CGGATGGAATGCATATCTTTCATTC 58.680 40.000 0.00 0.00 43.06 2.67
44 45 6.320171 GGATGGAATGCATATCTTTCATTCG 58.680 40.000 0.00 0.00 44.09 3.34
45 46 6.149973 GGATGGAATGCATATCTTTCATTCGA 59.850 38.462 0.00 5.14 44.09 3.71
46 47 6.304356 TGGAATGCATATCTTTCATTCGAC 57.696 37.500 0.00 0.00 44.09 4.20
47 48 6.057533 TGGAATGCATATCTTTCATTCGACT 58.942 36.000 0.00 0.00 44.09 4.18
48 49 6.543465 TGGAATGCATATCTTTCATTCGACTT 59.457 34.615 0.00 0.00 44.09 3.01
49 50 6.854892 GGAATGCATATCTTTCATTCGACTTG 59.145 38.462 0.00 0.00 44.09 3.16
50 51 5.160699 TGCATATCTTTCATTCGACTTGC 57.839 39.130 0.00 0.00 0.00 4.01
51 52 4.635324 TGCATATCTTTCATTCGACTTGCA 59.365 37.500 0.00 0.00 34.33 4.08
52 53 5.297527 TGCATATCTTTCATTCGACTTGCAT 59.702 36.000 0.00 0.00 32.01 3.96
53 54 6.482973 TGCATATCTTTCATTCGACTTGCATA 59.517 34.615 0.00 0.00 32.01 3.14
54 55 7.173735 TGCATATCTTTCATTCGACTTGCATAT 59.826 33.333 0.00 0.00 32.01 1.78
55 56 8.019669 GCATATCTTTCATTCGACTTGCATATT 58.980 33.333 0.00 0.00 0.00 1.28
56 57 9.326339 CATATCTTTCATTCGACTTGCATATTG 57.674 33.333 0.00 0.00 0.00 1.90
57 58 5.572211 TCTTTCATTCGACTTGCATATTGC 58.428 37.500 0.00 0.00 45.29 3.56
90 91 2.512515 GGCACCGCCTCTCATGAC 60.513 66.667 0.00 0.00 46.69 3.06
91 92 2.512515 GCACCGCCTCTCATGACC 60.513 66.667 0.00 0.00 0.00 4.02
92 93 2.202797 CACCGCCTCTCATGACCG 60.203 66.667 0.00 0.00 0.00 4.79
93 94 2.362503 ACCGCCTCTCATGACCGA 60.363 61.111 0.00 0.00 0.00 4.69
94 95 2.105128 CCGCCTCTCATGACCGAC 59.895 66.667 0.00 0.00 0.00 4.79
95 96 2.418910 CCGCCTCTCATGACCGACT 61.419 63.158 0.00 0.00 0.00 4.18
96 97 1.513158 CGCCTCTCATGACCGACTT 59.487 57.895 0.00 0.00 0.00 3.01
97 98 0.803768 CGCCTCTCATGACCGACTTG 60.804 60.000 0.00 0.00 0.00 3.16
98 99 0.532573 GCCTCTCATGACCGACTTGA 59.467 55.000 0.00 0.00 0.00 3.02
99 100 1.066858 GCCTCTCATGACCGACTTGAA 60.067 52.381 0.00 0.00 33.39 2.69
100 101 2.611518 CCTCTCATGACCGACTTGAAC 58.388 52.381 0.00 0.00 33.39 3.18
101 102 2.611518 CTCTCATGACCGACTTGAACC 58.388 52.381 0.00 0.00 33.39 3.62
102 103 1.967779 TCTCATGACCGACTTGAACCA 59.032 47.619 0.00 0.00 33.39 3.67
103 104 2.367241 TCTCATGACCGACTTGAACCAA 59.633 45.455 0.00 0.00 33.39 3.67
104 105 3.138304 CTCATGACCGACTTGAACCAAA 58.862 45.455 0.00 0.00 33.39 3.28
105 106 3.546724 TCATGACCGACTTGAACCAAAA 58.453 40.909 0.00 0.00 31.30 2.44
106 107 3.314080 TCATGACCGACTTGAACCAAAAC 59.686 43.478 0.00 0.00 31.30 2.43
107 108 2.712709 TGACCGACTTGAACCAAAACA 58.287 42.857 0.00 0.00 0.00 2.83
108 109 2.420722 TGACCGACTTGAACCAAAACAC 59.579 45.455 0.00 0.00 0.00 3.32
109 110 2.420722 GACCGACTTGAACCAAAACACA 59.579 45.455 0.00 0.00 0.00 3.72
110 111 2.162809 ACCGACTTGAACCAAAACACAC 59.837 45.455 0.00 0.00 0.00 3.82
111 112 2.478879 CCGACTTGAACCAAAACACACC 60.479 50.000 0.00 0.00 0.00 4.16
112 113 2.162608 CGACTTGAACCAAAACACACCA 59.837 45.455 0.00 0.00 0.00 4.17
113 114 3.366476 CGACTTGAACCAAAACACACCAA 60.366 43.478 0.00 0.00 0.00 3.67
114 115 4.561105 GACTTGAACCAAAACACACCAAA 58.439 39.130 0.00 0.00 0.00 3.28
115 116 4.962155 ACTTGAACCAAAACACACCAAAA 58.038 34.783 0.00 0.00 0.00 2.44
116 117 4.994217 ACTTGAACCAAAACACACCAAAAG 59.006 37.500 0.00 0.00 0.00 2.27
117 118 3.931578 TGAACCAAAACACACCAAAAGG 58.068 40.909 0.00 0.00 0.00 3.11
118 119 3.266636 GAACCAAAACACACCAAAAGGG 58.733 45.455 0.00 0.00 44.81 3.95
119 120 1.557371 ACCAAAACACACCAAAAGGGG 59.443 47.619 0.00 0.00 42.91 4.79
120 121 1.557371 CCAAAACACACCAAAAGGGGT 59.443 47.619 0.00 0.00 43.56 4.95
121 122 2.419436 CCAAAACACACCAAAAGGGGTC 60.419 50.000 0.00 0.00 39.79 4.46
122 123 1.491668 AAACACACCAAAAGGGGTCC 58.508 50.000 0.00 0.00 39.79 4.46
123 124 0.753848 AACACACCAAAAGGGGTCCG 60.754 55.000 0.00 0.00 39.79 4.79
124 125 1.149627 CACACCAAAAGGGGTCCGA 59.850 57.895 0.00 0.00 39.79 4.55
125 126 0.889186 CACACCAAAAGGGGTCCGAG 60.889 60.000 0.00 0.00 39.79 4.63
126 127 1.057851 ACACCAAAAGGGGTCCGAGA 61.058 55.000 0.00 0.00 39.79 4.04
127 128 0.605589 CACCAAAAGGGGTCCGAGAC 60.606 60.000 0.00 0.00 39.79 3.36
142 143 0.863144 GAGACCTCGAGCTAGCTACG 59.137 60.000 19.38 21.42 0.00 3.51
143 144 0.533308 AGACCTCGAGCTAGCTACGG 60.533 60.000 25.72 22.75 0.00 4.02
144 145 2.120355 GACCTCGAGCTAGCTACGGC 62.120 65.000 25.72 12.31 39.06 5.68
145 146 2.187493 CCTCGAGCTAGCTACGGCA 61.187 63.158 25.72 13.61 41.70 5.69
146 147 1.725557 CCTCGAGCTAGCTACGGCAA 61.726 60.000 25.72 13.10 41.70 4.52
147 148 0.100682 CTCGAGCTAGCTACGGCAAA 59.899 55.000 25.72 12.85 41.70 3.68
148 149 0.100682 TCGAGCTAGCTACGGCAAAG 59.899 55.000 25.72 10.12 41.70 2.77
149 150 0.872021 CGAGCTAGCTACGGCAAAGG 60.872 60.000 19.38 0.00 41.70 3.11
150 151 1.153349 AGCTAGCTACGGCAAAGGC 60.153 57.895 17.69 0.00 41.70 4.35
160 161 4.111016 GCAAAGGCCGGTTACGCC 62.111 66.667 1.90 0.00 39.22 5.68
161 162 2.359478 CAAAGGCCGGTTACGCCT 60.359 61.111 1.90 0.00 44.55 5.52
162 163 2.046604 AAAGGCCGGTTACGCCTC 60.047 61.111 1.90 0.00 42.81 4.70
163 164 3.617143 AAAGGCCGGTTACGCCTCC 62.617 63.158 1.90 0.00 42.81 4.30
166 167 4.171103 GCCGGTTACGCCTCCCAT 62.171 66.667 1.90 0.00 39.22 4.00
167 168 2.108362 CCGGTTACGCCTCCCATC 59.892 66.667 0.00 0.00 39.22 3.51
168 169 2.432300 CCGGTTACGCCTCCCATCT 61.432 63.158 0.00 0.00 39.22 2.90
169 170 1.520666 CGGTTACGCCTCCCATCTT 59.479 57.895 0.00 0.00 34.25 2.40
170 171 0.529992 CGGTTACGCCTCCCATCTTC 60.530 60.000 0.00 0.00 34.25 2.87
171 172 0.179054 GGTTACGCCTCCCATCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
172 173 0.179054 GTTACGCCTCCCATCTTCCC 60.179 60.000 0.00 0.00 0.00 3.97
173 174 0.326238 TTACGCCTCCCATCTTCCCT 60.326 55.000 0.00 0.00 0.00 4.20
174 175 1.048724 TACGCCTCCCATCTTCCCTG 61.049 60.000 0.00 0.00 0.00 4.45
175 176 2.066393 CGCCTCCCATCTTCCCTGA 61.066 63.158 0.00 0.00 0.00 3.86
176 177 1.529309 GCCTCCCATCTTCCCTGAC 59.471 63.158 0.00 0.00 0.00 3.51
177 178 1.988982 GCCTCCCATCTTCCCTGACC 61.989 65.000 0.00 0.00 0.00 4.02
178 179 1.690219 CCTCCCATCTTCCCTGACCG 61.690 65.000 0.00 0.00 0.00 4.79
179 180 1.689233 TCCCATCTTCCCTGACCGG 60.689 63.158 0.00 0.00 0.00 5.28
180 181 2.190578 CCATCTTCCCTGACCGGC 59.809 66.667 0.00 0.00 0.00 6.13
181 182 2.370445 CCATCTTCCCTGACCGGCT 61.370 63.158 0.00 0.00 0.00 5.52
182 183 1.153289 CATCTTCCCTGACCGGCTG 60.153 63.158 0.00 0.00 0.00 4.85
183 184 1.306141 ATCTTCCCTGACCGGCTGA 60.306 57.895 0.00 0.00 0.00 4.26
184 185 1.617947 ATCTTCCCTGACCGGCTGAC 61.618 60.000 0.00 0.00 0.00 3.51
185 186 3.316573 CTTCCCTGACCGGCTGACC 62.317 68.421 0.00 0.00 0.00 4.02
188 189 4.087892 CCTGACCGGCTGACCCTG 62.088 72.222 0.00 0.00 0.00 4.45
189 190 3.314331 CTGACCGGCTGACCCTGT 61.314 66.667 0.00 0.00 33.24 4.00
190 191 2.847234 TGACCGGCTGACCCTGTT 60.847 61.111 0.00 0.00 30.36 3.16
191 192 2.047179 GACCGGCTGACCCTGTTC 60.047 66.667 0.00 0.00 30.36 3.18
192 193 2.526873 ACCGGCTGACCCTGTTCT 60.527 61.111 0.00 0.00 0.00 3.01
193 194 1.229082 ACCGGCTGACCCTGTTCTA 60.229 57.895 0.00 0.00 0.00 2.10
194 195 0.834687 ACCGGCTGACCCTGTTCTAA 60.835 55.000 0.00 0.00 0.00 2.10
195 196 0.323629 CCGGCTGACCCTGTTCTAAA 59.676 55.000 0.00 0.00 0.00 1.85
196 197 1.271163 CCGGCTGACCCTGTTCTAAAA 60.271 52.381 0.00 0.00 0.00 1.52
197 198 2.076863 CGGCTGACCCTGTTCTAAAAG 58.923 52.381 0.00 0.00 0.00 2.27
198 199 2.437413 GGCTGACCCTGTTCTAAAAGG 58.563 52.381 0.00 0.00 0.00 3.11
199 200 2.039879 GGCTGACCCTGTTCTAAAAGGA 59.960 50.000 0.09 0.00 35.40 3.36
200 201 3.339141 GCTGACCCTGTTCTAAAAGGAG 58.661 50.000 0.09 0.00 35.40 3.69
201 202 3.008049 GCTGACCCTGTTCTAAAAGGAGA 59.992 47.826 0.09 0.00 35.40 3.71
202 203 4.505039 GCTGACCCTGTTCTAAAAGGAGAA 60.505 45.833 0.09 0.00 35.40 2.87
203 204 5.621193 CTGACCCTGTTCTAAAAGGAGAAA 58.379 41.667 0.09 0.00 37.20 2.52
204 205 6.200878 TGACCCTGTTCTAAAAGGAGAAAT 57.799 37.500 0.09 0.00 37.20 2.17
205 206 6.238648 TGACCCTGTTCTAAAAGGAGAAATC 58.761 40.000 0.09 0.00 37.20 2.17
206 207 6.044404 TGACCCTGTTCTAAAAGGAGAAATCT 59.956 38.462 0.09 0.00 37.20 2.40
207 208 6.853490 ACCCTGTTCTAAAAGGAGAAATCTT 58.147 36.000 0.09 0.00 37.20 2.40
208 209 6.943146 ACCCTGTTCTAAAAGGAGAAATCTTC 59.057 38.462 0.09 0.00 37.20 2.87
209 210 6.375736 CCCTGTTCTAAAAGGAGAAATCTTCC 59.624 42.308 0.09 0.00 37.20 3.46
210 211 6.375736 CCTGTTCTAAAAGGAGAAATCTTCCC 59.624 42.308 0.00 0.00 37.20 3.97
211 212 6.246163 TGTTCTAAAAGGAGAAATCTTCCCC 58.754 40.000 0.00 0.00 37.20 4.81
212 213 5.099042 TCTAAAAGGAGAAATCTTCCCCG 57.901 43.478 0.00 0.00 31.97 5.73
213 214 4.781087 TCTAAAAGGAGAAATCTTCCCCGA 59.219 41.667 0.00 0.00 31.97 5.14
214 215 3.351794 AAAGGAGAAATCTTCCCCGAC 57.648 47.619 0.00 0.00 31.97 4.79
215 216 1.205055 AGGAGAAATCTTCCCCGACC 58.795 55.000 0.00 0.00 31.97 4.79
216 217 0.180642 GGAGAAATCTTCCCCGACCC 59.819 60.000 0.00 0.00 0.00 4.46
217 218 0.909623 GAGAAATCTTCCCCGACCCA 59.090 55.000 0.00 0.00 0.00 4.51
218 219 1.280998 GAGAAATCTTCCCCGACCCAA 59.719 52.381 0.00 0.00 0.00 4.12
219 220 1.708551 AGAAATCTTCCCCGACCCAAA 59.291 47.619 0.00 0.00 0.00 3.28
220 221 1.816835 GAAATCTTCCCCGACCCAAAC 59.183 52.381 0.00 0.00 0.00 2.93
221 222 0.039180 AATCTTCCCCGACCCAAACC 59.961 55.000 0.00 0.00 0.00 3.27
222 223 1.859841 ATCTTCCCCGACCCAAACCC 61.860 60.000 0.00 0.00 0.00 4.11
223 224 2.777400 TTCCCCGACCCAAACCCA 60.777 61.111 0.00 0.00 0.00 4.51
224 225 2.150014 CTTCCCCGACCCAAACCCAT 62.150 60.000 0.00 0.00 0.00 4.00
225 226 2.044352 CCCCGACCCAAACCCATC 60.044 66.667 0.00 0.00 0.00 3.51
226 227 2.612493 CCCCGACCCAAACCCATCT 61.612 63.158 0.00 0.00 0.00 2.90
227 228 1.378514 CCCGACCCAAACCCATCTG 60.379 63.158 0.00 0.00 0.00 2.90
228 229 2.046285 CCGACCCAAACCCATCTGC 61.046 63.158 0.00 0.00 0.00 4.26
229 230 1.002134 CGACCCAAACCCATCTGCT 60.002 57.895 0.00 0.00 0.00 4.24
230 231 1.026718 CGACCCAAACCCATCTGCTC 61.027 60.000 0.00 0.00 0.00 4.26
231 232 0.681243 GACCCAAACCCATCTGCTCC 60.681 60.000 0.00 0.00 0.00 4.70
232 233 1.750399 CCCAAACCCATCTGCTCCG 60.750 63.158 0.00 0.00 0.00 4.63
233 234 2.409870 CCAAACCCATCTGCTCCGC 61.410 63.158 0.00 0.00 0.00 5.54
234 235 2.044946 AAACCCATCTGCTCCGCC 60.045 61.111 0.00 0.00 0.00 6.13
235 236 3.976701 AAACCCATCTGCTCCGCCG 62.977 63.158 0.00 0.00 0.00 6.46
1170 1173 1.209747 GAAATTGGGGACTACTCGGCT 59.790 52.381 0.00 0.00 0.00 5.52
1335 1340 1.669440 GGTTACCGACCTGACTGCA 59.331 57.895 0.00 0.00 45.55 4.41
1383 1388 1.689813 TCGCTGAAGTTGGACAGGTTA 59.310 47.619 0.00 0.00 35.05 2.85
1965 2845 4.227300 ACATATGACCAGGCAAAGAAGGTA 59.773 41.667 10.38 0.00 33.77 3.08
2007 2887 2.879756 GCTCAACAAGGAACCTGCCATA 60.880 50.000 0.00 0.00 0.00 2.74
2106 2992 4.780021 AGATCTTTGCAGAGAGAAGGGTTA 59.220 41.667 12.98 0.00 30.36 2.85
2652 3538 2.609459 CGAGAGGGTTTGGATGAAATCG 59.391 50.000 0.00 0.00 46.86 3.34
2840 3730 2.036098 CTGCCCTGGTTGCATCCA 59.964 61.111 15.66 15.66 38.22 3.41
2880 3770 6.540083 AGCTAGTCTAGAGGAGAGGATAAAC 58.460 44.000 11.27 0.00 33.72 2.01
3453 4343 0.333993 ATCCCAATGCTGCAGAACCT 59.666 50.000 20.43 0.00 0.00 3.50
3471 4361 5.303845 AGAACCTTAGTCCTTACTGTTTCGT 59.696 40.000 0.00 0.00 36.36 3.85
3533 4432 6.053650 TCAATGTATTCTCATGCTCTGAAGG 58.946 40.000 0.00 0.00 32.14 3.46
3534 4433 5.883685 ATGTATTCTCATGCTCTGAAGGA 57.116 39.130 0.00 0.00 32.14 3.36
3545 4444 3.644738 TGCTCTGAAGGATCTGATGCATA 59.355 43.478 11.83 0.00 35.23 3.14
3703 4647 2.600731 TGTTGTGCCGTTTTCTTTGTG 58.399 42.857 0.00 0.00 0.00 3.33
3705 4649 0.179124 TGTGCCGTTTTCTTTGTGGC 60.179 50.000 0.00 0.00 45.91 5.01
3771 4716 2.946329 TGTTGTTTACTTCATGCGTGGT 59.054 40.909 5.98 0.00 0.00 4.16
3802 4747 7.071950 TGCTGTATTACCCCATAAGATGTTAGT 59.928 37.037 0.00 0.00 0.00 2.24
3804 4749 8.326765 TGTATTACCCCATAAGATGTTAGTGT 57.673 34.615 0.00 0.00 0.00 3.55
3842 4787 9.099454 CAGTTAAACTGTTAAGATGATACTCCC 57.901 37.037 0.00 0.00 41.19 4.30
3843 4788 9.047947 AGTTAAACTGTTAAGATGATACTCCCT 57.952 33.333 0.00 0.00 29.74 4.20
3844 4789 9.315525 GTTAAACTGTTAAGATGATACTCCCTC 57.684 37.037 0.00 0.00 29.74 4.30
3845 4790 6.487299 AACTGTTAAGATGATACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
3846 4791 4.585162 ACTGTTAAGATGATACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
3847 4792 4.543689 TGTTAAGATGATACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
3848 4793 4.583489 TGTTAAGATGATACTCCCTCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
3849 4794 2.296073 AGATGATACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
3850 4795 1.203075 AGATGATACTCCCTCCGTCCC 60.203 57.143 0.00 0.00 0.00 4.46
3851 4796 0.561184 ATGATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
3852 4797 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
3853 4798 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
3854 4799 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
3855 4800 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3856 4801 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3857 4802 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3858 4803 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3859 4804 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3860 4805 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3861 4806 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3862 4807 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3863 4808 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3864 4809 4.324267 CTCCGTCCCAAAATAAGTGACTT 58.676 43.478 2.37 2.37 0.00 3.01
3865 4810 5.484715 CTCCGTCCCAAAATAAGTGACTTA 58.515 41.667 7.60 7.60 0.00 2.24
3866 4811 5.867330 TCCGTCCCAAAATAAGTGACTTAA 58.133 37.500 9.35 0.00 29.35 1.85
3867 4812 5.702209 TCCGTCCCAAAATAAGTGACTTAAC 59.298 40.000 9.35 0.45 29.35 2.01
3868 4813 5.704053 CCGTCCCAAAATAAGTGACTTAACT 59.296 40.000 9.35 0.00 29.35 2.24
3869 4814 6.206048 CCGTCCCAAAATAAGTGACTTAACTT 59.794 38.462 9.35 3.45 42.89 2.66
3870 4815 7.255346 CCGTCCCAAAATAAGTGACTTAACTTT 60.255 37.037 9.35 9.10 40.77 2.66
3871 4816 7.589954 CGTCCCAAAATAAGTGACTTAACTTTG 59.410 37.037 23.09 23.09 40.77 2.77
3872 4817 8.410912 GTCCCAAAATAAGTGACTTAACTTTGT 58.589 33.333 25.39 7.77 40.77 2.83
3873 4818 9.629878 TCCCAAAATAAGTGACTTAACTTTGTA 57.370 29.630 25.39 17.43 40.77 2.41
3874 4819 9.673454 CCCAAAATAAGTGACTTAACTTTGTAC 57.327 33.333 25.39 0.00 40.77 2.90
4004 4949 7.986085 AAATATTGGTCATAGATGTACTGGC 57.014 36.000 0.00 0.00 0.00 4.85
4026 4971 5.641209 GGCAACTATCATATCGCAATCTTCT 59.359 40.000 0.00 0.00 0.00 2.85
4045 4990 6.868622 TCTTCTTACTCAGAGTTAGCATTCC 58.131 40.000 8.80 0.00 31.12 3.01
4046 4991 6.437477 TCTTCTTACTCAGAGTTAGCATTCCA 59.563 38.462 8.80 0.00 31.12 3.53
4088 5033 9.982651 TGCATAATTTTATCTAGTACTCACTCC 57.017 33.333 0.00 0.00 36.14 3.85
4092 5037 6.690194 TTTTATCTAGTACTCACTCCGTCC 57.310 41.667 0.00 0.00 36.14 4.79
4093 5038 2.306341 TCTAGTACTCACTCCGTCCG 57.694 55.000 0.00 0.00 36.14 4.79
4094 5039 1.827344 TCTAGTACTCACTCCGTCCGA 59.173 52.381 0.00 0.00 36.14 4.55
4095 5040 2.234661 TCTAGTACTCACTCCGTCCGAA 59.765 50.000 0.00 0.00 36.14 4.30
4096 5041 1.901591 AGTACTCACTCCGTCCGAAA 58.098 50.000 0.00 0.00 0.00 3.46
4098 5043 2.624838 AGTACTCACTCCGTCCGAAAAA 59.375 45.455 0.00 0.00 0.00 1.94
4099 5044 2.150397 ACTCACTCCGTCCGAAAAAG 57.850 50.000 0.00 0.00 0.00 2.27
4100 5045 0.790814 CTCACTCCGTCCGAAAAAGC 59.209 55.000 0.00 0.00 0.00 3.51
4101 5046 0.391597 TCACTCCGTCCGAAAAAGCT 59.608 50.000 0.00 0.00 0.00 3.74
4102 5047 1.202604 TCACTCCGTCCGAAAAAGCTT 60.203 47.619 0.00 0.00 0.00 3.74
4103 5048 1.069906 CACTCCGTCCGAAAAAGCTTG 60.070 52.381 0.00 0.00 0.00 4.01
4104 5049 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
4105 5050 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
4107 5052 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
4108 5053 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
4110 5055 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
4111 5056 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
4118 5063 2.140065 GCTTGTCCCAAGCTTGTTTC 57.860 50.000 24.35 13.85 40.01 2.78
4120 5065 2.287849 GCTTGTCCCAAGCTTGTTTCTC 60.288 50.000 24.35 10.65 40.01 2.87
4122 5067 3.011566 TGTCCCAAGCTTGTTTCTCAA 57.988 42.857 24.35 1.41 34.61 3.02
4123 5068 3.360867 TGTCCCAAGCTTGTTTCTCAAA 58.639 40.909 24.35 0.00 35.48 2.69
4124 5069 3.960102 TGTCCCAAGCTTGTTTCTCAAAT 59.040 39.130 24.35 0.00 35.48 2.32
4125 5070 4.202141 TGTCCCAAGCTTGTTTCTCAAATG 60.202 41.667 24.35 5.47 35.48 2.32
4126 5071 3.321682 TCCCAAGCTTGTTTCTCAAATGG 59.678 43.478 24.35 14.01 35.48 3.16
4127 5072 3.321682 CCCAAGCTTGTTTCTCAAATGGA 59.678 43.478 24.35 0.00 36.92 3.41
4128 5073 4.020839 CCCAAGCTTGTTTCTCAAATGGAT 60.021 41.667 24.35 0.00 36.92 3.41
4129 5074 4.927425 CCAAGCTTGTTTCTCAAATGGATG 59.073 41.667 24.35 0.00 36.92 3.51
4130 5075 5.510179 CCAAGCTTGTTTCTCAAATGGATGT 60.510 40.000 24.35 0.00 36.92 3.06
4131 5076 6.294675 CCAAGCTTGTTTCTCAAATGGATGTA 60.295 38.462 24.35 0.00 36.92 2.29
4132 5077 7.318141 CAAGCTTGTTTCTCAAATGGATGTAT 58.682 34.615 18.65 0.00 35.48 2.29
4133 5078 7.093322 AGCTTGTTTCTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
4134 5079 6.888632 AGCTTGTTTCTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
4135 5080 8.049117 AGCTTGTTTCTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
4136 5081 8.341173 GCTTGTTTCTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
4137 5082 7.792374 TGTTTCTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
4138 5083 7.337938 TGTTTCTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
4139 5084 7.280876 TGTTTCTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
4140 5085 6.737720 TCTCAAATGGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
4141 5086 7.839680 TCTCAAATGGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
4142 5087 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
4143 5088 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
4144 5089 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
4145 5090 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
4146 5091 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
4147 5092 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
4148 5093 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
4149 5094 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
4161 5106 6.810911 CACTAACTTGGTGCTAGATACATCT 58.189 40.000 0.00 0.00 40.86 2.90
4162 5107 7.941919 CACTAACTTGGTGCTAGATACATCTA 58.058 38.462 0.00 0.00 38.32 1.98
4163 5108 8.580720 CACTAACTTGGTGCTAGATACATCTAT 58.419 37.037 0.00 0.00 38.60 1.98
4164 5109 9.148879 ACTAACTTGGTGCTAGATACATCTATT 57.851 33.333 0.00 0.00 38.60 1.73
4165 5110 9.988815 CTAACTTGGTGCTAGATACATCTATTT 57.011 33.333 0.00 0.00 38.60 1.40
4166 5111 8.668510 AACTTGGTGCTAGATACATCTATTTG 57.331 34.615 0.00 0.00 38.60 2.32
4167 5112 8.023021 ACTTGGTGCTAGATACATCTATTTGA 57.977 34.615 0.00 0.00 38.60 2.69
4168 5113 8.147058 ACTTGGTGCTAGATACATCTATTTGAG 58.853 37.037 0.00 0.00 38.60 3.02
4169 5114 6.997655 TGGTGCTAGATACATCTATTTGAGG 58.002 40.000 0.00 0.00 38.60 3.86
4170 5115 6.014242 TGGTGCTAGATACATCTATTTGAGGG 60.014 42.308 0.00 0.00 38.60 4.30
4171 5116 6.211584 GGTGCTAGATACATCTATTTGAGGGA 59.788 42.308 0.00 0.00 38.60 4.20
4172 5117 7.093992 GTGCTAGATACATCTATTTGAGGGAC 58.906 42.308 0.00 0.00 38.60 4.46
4173 5118 6.782494 TGCTAGATACATCTATTTGAGGGACA 59.218 38.462 0.00 0.00 38.60 4.02
4174 5119 7.290014 TGCTAGATACATCTATTTGAGGGACAA 59.710 37.037 0.00 0.00 38.60 3.18
4175 5120 7.816995 GCTAGATACATCTATTTGAGGGACAAG 59.183 40.741 0.00 0.00 38.60 3.16
4176 5121 6.529220 AGATACATCTATTTGAGGGACAAGC 58.471 40.000 0.00 0.00 36.19 4.01
4177 5122 3.891049 ACATCTATTTGAGGGACAAGCC 58.109 45.455 0.00 0.00 39.77 4.35
4178 5123 3.525199 ACATCTATTTGAGGGACAAGCCT 59.475 43.478 0.00 0.00 39.77 4.58
4179 5124 4.018050 ACATCTATTTGAGGGACAAGCCTT 60.018 41.667 0.00 0.00 39.77 4.35
4180 5125 4.657814 TCTATTTGAGGGACAAGCCTTT 57.342 40.909 0.00 0.00 39.77 3.11
4181 5126 4.998051 TCTATTTGAGGGACAAGCCTTTT 58.002 39.130 0.00 0.00 39.77 2.27
4182 5127 5.010282 TCTATTTGAGGGACAAGCCTTTTC 58.990 41.667 0.00 0.00 39.77 2.29
4183 5128 1.604604 TTGAGGGACAAGCCTTTTCG 58.395 50.000 0.00 0.00 36.66 3.46
4184 5129 0.250727 TGAGGGACAAGCCTTTTCGG 60.251 55.000 0.00 0.00 36.66 4.30
4185 5130 0.036306 GAGGGACAAGCCTTTTCGGA 59.964 55.000 0.00 0.00 36.66 4.55
4186 5131 0.250770 AGGGACAAGCCTTTTCGGAC 60.251 55.000 0.00 0.00 36.66 4.79
4190 5135 0.602905 ACAAGCCTTTTCGGACGGAG 60.603 55.000 0.00 0.00 33.16 4.63
4199 5144 0.911769 TTCGGACGGAGGGAGTAGTA 59.088 55.000 0.00 0.00 0.00 1.82
4233 5179 7.889073 GTCCATATCAGTCCTATAGGTACAGAA 59.111 40.741 18.51 8.87 36.34 3.02
4252 5198 2.592102 ACATTTGTCCAGCCATCACT 57.408 45.000 0.00 0.00 0.00 3.41
4271 5217 5.947663 TCACTTTTTGTCCTTTCTGGGATA 58.052 37.500 0.00 0.00 37.73 2.59
4272 5218 6.552008 TCACTTTTTGTCCTTTCTGGGATAT 58.448 36.000 0.00 0.00 37.73 1.63
4273 5219 7.695055 TCACTTTTTGTCCTTTCTGGGATATA 58.305 34.615 0.00 0.00 37.73 0.86
4274 5220 8.336235 TCACTTTTTGTCCTTTCTGGGATATAT 58.664 33.333 0.00 0.00 37.73 0.86
4275 5221 8.624776 CACTTTTTGTCCTTTCTGGGATATATC 58.375 37.037 3.96 3.96 37.73 1.63
4276 5222 8.336235 ACTTTTTGTCCTTTCTGGGATATATCA 58.664 33.333 14.60 0.00 37.73 2.15
4277 5223 9.359653 CTTTTTGTCCTTTCTGGGATATATCAT 57.640 33.333 14.60 0.00 37.73 2.45
4278 5224 8.924511 TTTTGTCCTTTCTGGGATATATCATC 57.075 34.615 14.60 6.70 37.73 2.92
4279 5225 7.878621 TTGTCCTTTCTGGGATATATCATCT 57.121 36.000 14.60 0.00 37.73 2.90
4280 5226 7.487822 TGTCCTTTCTGGGATATATCATCTC 57.512 40.000 14.60 2.15 37.73 2.75
4281 5227 7.018769 TGTCCTTTCTGGGATATATCATCTCA 58.981 38.462 14.60 6.19 37.73 3.27
4282 5228 7.038729 TGTCCTTTCTGGGATATATCATCTCAC 60.039 40.741 14.60 0.00 37.73 3.51
4283 5229 7.018769 TCCTTTCTGGGATATATCATCTCACA 58.981 38.462 14.60 0.00 36.20 3.58
4293 5239 2.105006 TCATCTCACAGCCAAGCTTC 57.895 50.000 0.00 0.00 36.40 3.86
4296 5242 0.761187 TCTCACAGCCAAGCTTCAGT 59.239 50.000 0.00 0.00 36.40 3.41
4299 5245 1.134128 TCACAGCCAAGCTTCAGTCAA 60.134 47.619 0.00 0.00 36.40 3.18
4307 5253 2.693797 AGCTTCAGTCAATGCAAACG 57.306 45.000 0.00 0.00 0.00 3.60
4326 5272 9.018716 TGCAAACGAAATAGCATTATTGTTATG 57.981 29.630 0.00 0.00 30.60 1.90
4350 5296 6.649973 TGCAATAGGACACCAAAAATTGAATG 59.350 34.615 0.00 0.00 0.00 2.67
4354 5300 6.729690 AGGACACCAAAAATTGAATGAGAA 57.270 33.333 0.00 0.00 0.00 2.87
4359 5305 8.652810 ACACCAAAAATTGAATGAGAAAGAAG 57.347 30.769 0.00 0.00 0.00 2.85
4360 5306 7.225341 ACACCAAAAATTGAATGAGAAAGAAGC 59.775 33.333 0.00 0.00 0.00 3.86
4366 5312 2.303022 TGAATGAGAAAGAAGCGAGGGT 59.697 45.455 0.00 0.00 0.00 4.34
4369 5315 1.691976 TGAGAAAGAAGCGAGGGTGAA 59.308 47.619 0.00 0.00 0.00 3.18
4377 5323 4.003648 AGAAGCGAGGGTGAAGTAATTTG 58.996 43.478 0.00 0.00 0.00 2.32
4378 5324 3.418684 AGCGAGGGTGAAGTAATTTGT 57.581 42.857 0.00 0.00 0.00 2.83
4405 5355 6.806249 TCACAATGTCTTTTTGTTCAGTGTTC 59.194 34.615 0.00 0.00 37.08 3.18
4415 5365 9.520204 CTTTTTGTTCAGTGTTCAATAATCTGT 57.480 29.630 0.00 0.00 0.00 3.41
4416 5366 9.868277 TTTTTGTTCAGTGTTCAATAATCTGTT 57.132 25.926 0.00 0.00 0.00 3.16
4459 5409 0.833287 TGGATAGGGAAGCTCAGTGC 59.167 55.000 0.00 0.00 43.29 4.40
4462 5412 2.549778 GGATAGGGAAGCTCAGTGCATC 60.550 54.545 0.00 0.00 45.94 3.91
4465 5415 2.121948 AGGGAAGCTCAGTGCATCATA 58.878 47.619 0.00 0.00 45.94 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.118629 TCCATCCGCCATATTAGAGCATC 60.119 47.826 0.00 0.00 0.00 3.91
5 6 2.840038 TCCATCCGCCATATTAGAGCAT 59.160 45.455 0.00 0.00 0.00 3.79
6 7 2.256306 TCCATCCGCCATATTAGAGCA 58.744 47.619 0.00 0.00 0.00 4.26
7 8 3.334583 TTCCATCCGCCATATTAGAGC 57.665 47.619 0.00 0.00 0.00 4.09
8 9 3.624861 GCATTCCATCCGCCATATTAGAG 59.375 47.826 0.00 0.00 0.00 2.43
9 10 3.008923 TGCATTCCATCCGCCATATTAGA 59.991 43.478 0.00 0.00 0.00 2.10
10 11 3.346315 TGCATTCCATCCGCCATATTAG 58.654 45.455 0.00 0.00 0.00 1.73
11 12 3.431673 TGCATTCCATCCGCCATATTA 57.568 42.857 0.00 0.00 0.00 0.98
12 13 2.291209 TGCATTCCATCCGCCATATT 57.709 45.000 0.00 0.00 0.00 1.28
13 14 2.519771 ATGCATTCCATCCGCCATAT 57.480 45.000 0.00 0.00 0.00 1.78
14 15 3.200605 AGATATGCATTCCATCCGCCATA 59.799 43.478 3.54 0.00 35.34 2.74
15 16 2.025605 AGATATGCATTCCATCCGCCAT 60.026 45.455 3.54 0.00 35.34 4.40
16 17 1.352017 AGATATGCATTCCATCCGCCA 59.648 47.619 3.54 0.00 35.34 5.69
17 18 2.119801 AGATATGCATTCCATCCGCC 57.880 50.000 3.54 0.00 35.34 6.13
18 19 3.503363 TGAAAGATATGCATTCCATCCGC 59.497 43.478 3.54 0.00 35.34 5.54
19 20 5.892160 ATGAAAGATATGCATTCCATCCG 57.108 39.130 3.54 0.00 35.34 4.18
20 21 6.149973 TCGAATGAAAGATATGCATTCCATCC 59.850 38.462 3.54 0.00 42.91 3.51
21 22 7.020010 GTCGAATGAAAGATATGCATTCCATC 58.980 38.462 3.54 1.60 42.91 3.51
22 23 6.713903 AGTCGAATGAAAGATATGCATTCCAT 59.286 34.615 3.54 0.00 42.91 3.41
23 24 6.057533 AGTCGAATGAAAGATATGCATTCCA 58.942 36.000 3.54 0.00 42.91 3.53
24 25 6.551385 AGTCGAATGAAAGATATGCATTCC 57.449 37.500 3.54 0.00 42.91 3.01
25 26 6.359087 GCAAGTCGAATGAAAGATATGCATTC 59.641 38.462 3.54 2.49 42.61 2.67
26 27 6.183360 TGCAAGTCGAATGAAAGATATGCATT 60.183 34.615 3.54 0.00 36.56 3.56
27 28 5.297527 TGCAAGTCGAATGAAAGATATGCAT 59.702 36.000 3.79 3.79 36.56 3.96
28 29 4.635324 TGCAAGTCGAATGAAAGATATGCA 59.365 37.500 0.95 0.95 37.97 3.96
29 30 5.160699 TGCAAGTCGAATGAAAGATATGC 57.839 39.130 3.77 0.00 33.99 3.14
30 31 9.326339 CAATATGCAAGTCGAATGAAAGATATG 57.674 33.333 3.77 0.00 0.00 1.78
31 32 8.019669 GCAATATGCAAGTCGAATGAAAGATAT 58.980 33.333 3.77 0.00 44.26 1.63
32 33 7.355017 GCAATATGCAAGTCGAATGAAAGATA 58.645 34.615 3.77 0.00 44.26 1.98
33 34 6.204359 GCAATATGCAAGTCGAATGAAAGAT 58.796 36.000 3.77 0.00 44.26 2.40
34 35 5.572211 GCAATATGCAAGTCGAATGAAAGA 58.428 37.500 3.77 0.00 44.26 2.52
35 36 4.435554 CGCAATATGCAAGTCGAATGAAAG 59.564 41.667 2.99 0.00 45.36 2.62
36 37 4.094146 TCGCAATATGCAAGTCGAATGAAA 59.906 37.500 2.99 0.00 45.36 2.69
37 38 3.620821 TCGCAATATGCAAGTCGAATGAA 59.379 39.130 2.99 0.00 45.36 2.57
38 39 3.194062 TCGCAATATGCAAGTCGAATGA 58.806 40.909 2.99 0.00 45.36 2.57
39 40 3.538780 CTCGCAATATGCAAGTCGAATG 58.461 45.455 2.99 0.00 45.36 2.67
40 41 2.545526 CCTCGCAATATGCAAGTCGAAT 59.454 45.455 2.99 0.00 45.36 3.34
41 42 1.933181 CCTCGCAATATGCAAGTCGAA 59.067 47.619 2.99 0.00 45.36 3.71
42 43 1.570813 CCTCGCAATATGCAAGTCGA 58.429 50.000 2.99 0.00 45.36 4.20
43 44 0.583438 CCCTCGCAATATGCAAGTCG 59.417 55.000 2.99 0.00 45.36 4.18
44 45 1.953559 TCCCTCGCAATATGCAAGTC 58.046 50.000 2.99 0.00 45.36 3.01
45 46 2.418368 TTCCCTCGCAATATGCAAGT 57.582 45.000 2.99 0.00 45.36 3.16
46 47 3.781079 TTTTCCCTCGCAATATGCAAG 57.219 42.857 2.99 0.00 45.36 4.01
74 75 2.512515 GGTCATGAGAGGCGGTGC 60.513 66.667 0.00 0.00 0.00 5.01
75 76 2.202797 CGGTCATGAGAGGCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
76 77 2.362503 TCGGTCATGAGAGGCGGT 60.363 61.111 0.00 0.00 0.00 5.68
77 78 1.949847 AAGTCGGTCATGAGAGGCGG 61.950 60.000 0.00 0.00 0.00 6.13
78 79 0.803768 CAAGTCGGTCATGAGAGGCG 60.804 60.000 0.00 0.00 0.00 5.52
79 80 0.532573 TCAAGTCGGTCATGAGAGGC 59.467 55.000 0.00 0.00 0.00 4.70
80 81 2.611518 GTTCAAGTCGGTCATGAGAGG 58.388 52.381 0.00 0.00 0.00 3.69
81 82 2.029020 TGGTTCAAGTCGGTCATGAGAG 60.029 50.000 0.00 0.00 0.00 3.20
82 83 1.967779 TGGTTCAAGTCGGTCATGAGA 59.032 47.619 0.00 0.00 0.00 3.27
83 84 2.455674 TGGTTCAAGTCGGTCATGAG 57.544 50.000 0.00 0.00 0.00 2.90
84 85 2.920724 TTGGTTCAAGTCGGTCATGA 57.079 45.000 0.00 0.00 0.00 3.07
85 86 3.066064 TGTTTTGGTTCAAGTCGGTCATG 59.934 43.478 0.00 0.00 0.00 3.07
86 87 3.066203 GTGTTTTGGTTCAAGTCGGTCAT 59.934 43.478 0.00 0.00 0.00 3.06
87 88 2.420722 GTGTTTTGGTTCAAGTCGGTCA 59.579 45.455 0.00 0.00 0.00 4.02
88 89 2.420722 TGTGTTTTGGTTCAAGTCGGTC 59.579 45.455 0.00 0.00 0.00 4.79
89 90 2.162809 GTGTGTTTTGGTTCAAGTCGGT 59.837 45.455 0.00 0.00 0.00 4.69
90 91 2.478879 GGTGTGTTTTGGTTCAAGTCGG 60.479 50.000 0.00 0.00 0.00 4.79
91 92 2.162608 TGGTGTGTTTTGGTTCAAGTCG 59.837 45.455 0.00 0.00 0.00 4.18
92 93 3.859411 TGGTGTGTTTTGGTTCAAGTC 57.141 42.857 0.00 0.00 0.00 3.01
93 94 4.608948 TTTGGTGTGTTTTGGTTCAAGT 57.391 36.364 0.00 0.00 0.00 3.16
94 95 4.391523 CCTTTTGGTGTGTTTTGGTTCAAG 59.608 41.667 0.00 0.00 34.07 3.02
95 96 4.319177 CCTTTTGGTGTGTTTTGGTTCAA 58.681 39.130 0.00 0.00 34.07 2.69
96 97 3.307059 CCCTTTTGGTGTGTTTTGGTTCA 60.307 43.478 0.00 0.00 38.10 3.18
97 98 3.266636 CCCTTTTGGTGTGTTTTGGTTC 58.733 45.455 0.00 0.00 38.10 3.62
98 99 2.026729 CCCCTTTTGGTGTGTTTTGGTT 60.027 45.455 0.00 0.00 38.10 3.67
99 100 1.557371 CCCCTTTTGGTGTGTTTTGGT 59.443 47.619 0.00 0.00 38.10 3.67
100 101 1.557371 ACCCCTTTTGGTGTGTTTTGG 59.443 47.619 0.00 0.00 37.20 3.28
101 102 2.419436 GGACCCCTTTTGGTGTGTTTTG 60.419 50.000 0.00 0.00 39.24 2.44
102 103 1.834896 GGACCCCTTTTGGTGTGTTTT 59.165 47.619 0.00 0.00 39.24 2.43
103 104 1.491668 GGACCCCTTTTGGTGTGTTT 58.508 50.000 0.00 0.00 39.24 2.83
104 105 0.753848 CGGACCCCTTTTGGTGTGTT 60.754 55.000 0.00 0.00 39.24 3.32
105 106 1.152839 CGGACCCCTTTTGGTGTGT 60.153 57.895 0.00 0.00 39.24 3.72
106 107 0.889186 CTCGGACCCCTTTTGGTGTG 60.889 60.000 0.00 0.00 39.24 3.82
107 108 1.057851 TCTCGGACCCCTTTTGGTGT 61.058 55.000 0.00 0.00 39.24 4.16
108 109 0.605589 GTCTCGGACCCCTTTTGGTG 60.606 60.000 0.00 0.00 39.24 4.17
109 110 1.759236 GTCTCGGACCCCTTTTGGT 59.241 57.895 0.00 0.00 42.79 3.67
110 111 1.002502 GGTCTCGGACCCCTTTTGG 60.003 63.158 10.92 0.00 46.19 3.28
111 112 4.716003 GGTCTCGGACCCCTTTTG 57.284 61.111 10.92 0.00 46.19 2.44
123 124 0.863144 CGTAGCTAGCTCGAGGTCTC 59.137 60.000 23.26 13.72 0.00 3.36
124 125 0.533308 CCGTAGCTAGCTCGAGGTCT 60.533 60.000 27.24 15.34 0.00 3.85
125 126 1.943293 CCGTAGCTAGCTCGAGGTC 59.057 63.158 27.24 7.88 0.00 3.85
126 127 2.188161 GCCGTAGCTAGCTCGAGGT 61.188 63.158 27.24 22.31 35.50 3.85
127 128 1.725557 TTGCCGTAGCTAGCTCGAGG 61.726 60.000 27.24 24.60 40.80 4.63
128 129 0.100682 TTTGCCGTAGCTAGCTCGAG 59.899 55.000 27.24 20.35 40.80 4.04
129 130 0.100682 CTTTGCCGTAGCTAGCTCGA 59.899 55.000 27.24 10.12 40.80 4.04
130 131 0.872021 CCTTTGCCGTAGCTAGCTCG 60.872 60.000 23.26 22.44 40.80 5.03
131 132 1.154814 GCCTTTGCCGTAGCTAGCTC 61.155 60.000 23.26 12.07 40.80 4.09
132 133 1.153349 GCCTTTGCCGTAGCTAGCT 60.153 57.895 23.12 23.12 40.80 3.32
133 134 3.410958 GCCTTTGCCGTAGCTAGC 58.589 61.111 6.62 6.62 40.80 3.42
150 151 1.968050 AAGATGGGAGGCGTAACCGG 61.968 60.000 0.00 0.00 46.52 5.28
151 152 0.529992 GAAGATGGGAGGCGTAACCG 60.530 60.000 0.00 0.00 46.52 4.44
152 153 0.179054 GGAAGATGGGAGGCGTAACC 60.179 60.000 0.00 0.00 39.61 2.85
153 154 0.179054 GGGAAGATGGGAGGCGTAAC 60.179 60.000 0.00 0.00 0.00 2.50
154 155 0.326238 AGGGAAGATGGGAGGCGTAA 60.326 55.000 0.00 0.00 0.00 3.18
155 156 1.048724 CAGGGAAGATGGGAGGCGTA 61.049 60.000 0.00 0.00 0.00 4.42
156 157 2.041265 AGGGAAGATGGGAGGCGT 59.959 61.111 0.00 0.00 0.00 5.68
157 158 2.066393 TCAGGGAAGATGGGAGGCG 61.066 63.158 0.00 0.00 0.00 5.52
158 159 1.529309 GTCAGGGAAGATGGGAGGC 59.471 63.158 0.00 0.00 0.00 4.70
159 160 1.690219 CGGTCAGGGAAGATGGGAGG 61.690 65.000 0.00 0.00 0.00 4.30
160 161 1.690219 CCGGTCAGGGAAGATGGGAG 61.690 65.000 0.00 0.00 35.97 4.30
161 162 1.689233 CCGGTCAGGGAAGATGGGA 60.689 63.158 0.00 0.00 35.97 4.37
162 163 2.911143 CCGGTCAGGGAAGATGGG 59.089 66.667 0.00 0.00 35.97 4.00
163 164 2.190578 GCCGGTCAGGGAAGATGG 59.809 66.667 1.90 0.00 41.48 3.51
164 165 1.153289 CAGCCGGTCAGGGAAGATG 60.153 63.158 1.90 0.00 41.48 2.90
165 166 1.306141 TCAGCCGGTCAGGGAAGAT 60.306 57.895 1.90 0.00 41.48 2.40
166 167 2.119611 TCAGCCGGTCAGGGAAGA 59.880 61.111 1.90 0.00 41.48 2.87
167 168 2.266055 GTCAGCCGGTCAGGGAAG 59.734 66.667 1.90 0.00 41.48 3.46
168 169 3.319198 GGTCAGCCGGTCAGGGAA 61.319 66.667 1.90 0.00 41.48 3.97
171 172 4.087892 CAGGGTCAGCCGGTCAGG 62.088 72.222 1.90 0.00 44.97 3.86
172 173 2.788191 GAACAGGGTCAGCCGGTCAG 62.788 65.000 1.90 0.00 34.97 3.51
173 174 2.847234 AACAGGGTCAGCCGGTCA 60.847 61.111 1.90 0.00 34.97 4.02
174 175 1.255667 TAGAACAGGGTCAGCCGGTC 61.256 60.000 1.90 0.00 34.97 4.79
175 176 0.834687 TTAGAACAGGGTCAGCCGGT 60.835 55.000 1.90 0.00 34.97 5.28
176 177 0.323629 TTTAGAACAGGGTCAGCCGG 59.676 55.000 0.00 0.00 34.97 6.13
177 178 2.076863 CTTTTAGAACAGGGTCAGCCG 58.923 52.381 0.00 0.00 34.97 5.52
178 179 2.039879 TCCTTTTAGAACAGGGTCAGCC 59.960 50.000 0.00 0.00 0.00 4.85
179 180 3.008049 TCTCCTTTTAGAACAGGGTCAGC 59.992 47.826 0.00 0.00 0.00 4.26
180 181 4.891992 TCTCCTTTTAGAACAGGGTCAG 57.108 45.455 0.00 0.00 0.00 3.51
181 182 5.640158 TTTCTCCTTTTAGAACAGGGTCA 57.360 39.130 0.00 0.00 35.25 4.02
182 183 6.477253 AGATTTCTCCTTTTAGAACAGGGTC 58.523 40.000 0.00 0.00 35.25 4.46
183 184 6.455690 AGATTTCTCCTTTTAGAACAGGGT 57.544 37.500 0.00 0.00 35.25 4.34
184 185 6.375736 GGAAGATTTCTCCTTTTAGAACAGGG 59.624 42.308 0.00 0.00 35.25 4.45
185 186 6.375736 GGGAAGATTTCTCCTTTTAGAACAGG 59.624 42.308 0.00 0.00 35.25 4.00
186 187 7.384439 GGGAAGATTTCTCCTTTTAGAACAG 57.616 40.000 0.00 0.00 35.25 3.16
198 199 0.909623 TGGGTCGGGGAAGATTTCTC 59.090 55.000 0.00 0.00 0.00 2.87
199 200 1.368374 TTGGGTCGGGGAAGATTTCT 58.632 50.000 0.00 0.00 0.00 2.52
200 201 1.816835 GTTTGGGTCGGGGAAGATTTC 59.183 52.381 0.00 0.00 0.00 2.17
201 202 1.549265 GGTTTGGGTCGGGGAAGATTT 60.549 52.381 0.00 0.00 0.00 2.17
202 203 0.039180 GGTTTGGGTCGGGGAAGATT 59.961 55.000 0.00 0.00 0.00 2.40
203 204 1.689412 GGTTTGGGTCGGGGAAGAT 59.311 57.895 0.00 0.00 0.00 2.40
204 205 2.531601 GGGTTTGGGTCGGGGAAGA 61.532 63.158 0.00 0.00 0.00 2.87
205 206 2.035155 GGGTTTGGGTCGGGGAAG 59.965 66.667 0.00 0.00 0.00 3.46
206 207 2.144859 GATGGGTTTGGGTCGGGGAA 62.145 60.000 0.00 0.00 0.00 3.97
207 208 2.533232 ATGGGTTTGGGTCGGGGA 60.533 61.111 0.00 0.00 0.00 4.81
208 209 2.044352 GATGGGTTTGGGTCGGGG 60.044 66.667 0.00 0.00 0.00 5.73
209 210 1.378514 CAGATGGGTTTGGGTCGGG 60.379 63.158 0.00 0.00 0.00 5.14
210 211 2.046285 GCAGATGGGTTTGGGTCGG 61.046 63.158 0.00 0.00 0.00 4.79
211 212 1.002134 AGCAGATGGGTTTGGGTCG 60.002 57.895 0.00 0.00 0.00 4.79
212 213 0.681243 GGAGCAGATGGGTTTGGGTC 60.681 60.000 0.00 0.00 0.00 4.46
213 214 1.384191 GGAGCAGATGGGTTTGGGT 59.616 57.895 0.00 0.00 0.00 4.51
214 215 1.750399 CGGAGCAGATGGGTTTGGG 60.750 63.158 0.00 0.00 0.00 4.12
215 216 3.909662 CGGAGCAGATGGGTTTGG 58.090 61.111 0.00 0.00 0.00 3.28
1035 1038 3.055240 ACTTCTCAATCTCCTGCTTGAGG 60.055 47.826 10.26 0.00 45.41 3.86
1170 1173 5.643551 CGAAACGCTTCTTCTTGTTGCGA 62.644 47.826 12.48 0.00 44.20 5.10
1335 1340 2.376225 TACCACGACCCTCACCCACT 62.376 60.000 0.00 0.00 0.00 4.00
1383 1388 1.561542 AGCCCAGAAACTGAATCCGAT 59.438 47.619 0.00 0.00 32.44 4.18
1965 2845 1.742308 TCTCCCTGGCCTTGTTAAGT 58.258 50.000 3.32 0.00 0.00 2.24
2106 2992 2.834549 CCACGCCTCCCTATCAATATCT 59.165 50.000 0.00 0.00 0.00 1.98
2652 3538 4.098501 CCTAATTCCCTCTCAACAATTGCC 59.901 45.833 5.05 0.00 0.00 4.52
2880 3770 2.789203 GCGCGACTTACTCAAGCCG 61.789 63.158 12.10 0.00 40.23 5.52
3453 4343 7.054491 ACCTTAACGAAACAGTAAGGACTAA 57.946 36.000 14.11 0.00 39.58 2.24
3533 4432 8.034215 AGAAGTAGCTACATTATGCATCAGATC 58.966 37.037 25.28 0.00 0.00 2.75
3534 4433 7.905265 AGAAGTAGCTACATTATGCATCAGAT 58.095 34.615 25.28 0.00 0.00 2.90
3545 4444 8.314751 AGACACACAATAAGAAGTAGCTACATT 58.685 33.333 25.28 17.73 0.00 2.71
3703 4647 1.166531 ACAGCCAACAAAGAGACGCC 61.167 55.000 0.00 0.00 0.00 5.68
3705 4649 0.868406 GGACAGCCAACAAAGAGACG 59.132 55.000 0.00 0.00 0.00 4.18
3743 4688 6.183360 ACGCATGAAGTAAACAACAGAAGAAA 60.183 34.615 0.00 0.00 0.00 2.52
3746 4691 4.905866 CACGCATGAAGTAAACAACAGAAG 59.094 41.667 0.00 0.00 0.00 2.85
3759 4704 0.443869 GCAGTACACCACGCATGAAG 59.556 55.000 0.00 0.00 0.00 3.02
3771 4716 5.900699 TCTTATGGGGTAATACAGCAGTACA 59.099 40.000 0.00 0.00 31.96 2.90
3827 4772 4.150359 GGACGGAGGGAGTATCATCTTAA 58.850 47.826 0.00 0.00 36.25 1.85
3837 4782 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3838 4783 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3839 4784 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3840 4785 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3841 4786 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3842 4787 3.939066 AGTCACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 33.84 4.63
3843 4788 4.360951 AAGTCACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 33.84 4.69
3844 4789 5.704053 AGTTAAGTCACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 33.84 4.79
3845 4790 6.796705 AGTTAAGTCACTTATTTTGGGACG 57.203 37.500 0.00 0.00 33.84 4.79
3846 4791 8.410912 ACAAAGTTAAGTCACTTATTTTGGGAC 58.589 33.333 24.61 10.71 35.87 4.46
3847 4792 8.528044 ACAAAGTTAAGTCACTTATTTTGGGA 57.472 30.769 24.61 1.03 35.87 4.37
3848 4793 9.673454 GTACAAAGTTAAGTCACTTATTTTGGG 57.327 33.333 24.61 11.73 35.87 4.12
3901 4846 8.989980 GCATACATCTTAAAACATACTACCCTC 58.010 37.037 0.00 0.00 0.00 4.30
3902 4847 7.937394 GGCATACATCTTAAAACATACTACCCT 59.063 37.037 0.00 0.00 0.00 4.34
3903 4848 7.937394 AGGCATACATCTTAAAACATACTACCC 59.063 37.037 0.00 0.00 0.00 3.69
3904 4849 8.904099 AGGCATACATCTTAAAACATACTACC 57.096 34.615 0.00 0.00 0.00 3.18
3905 4850 8.700644 CGAGGCATACATCTTAAAACATACTAC 58.299 37.037 0.00 0.00 0.00 2.73
3906 4851 7.384115 GCGAGGCATACATCTTAAAACATACTA 59.616 37.037 0.00 0.00 0.00 1.82
3907 4852 6.202954 GCGAGGCATACATCTTAAAACATACT 59.797 38.462 0.00 0.00 0.00 2.12
3908 4853 6.018262 TGCGAGGCATACATCTTAAAACATAC 60.018 38.462 0.00 0.00 31.71 2.39
3909 4854 6.052360 TGCGAGGCATACATCTTAAAACATA 58.948 36.000 0.00 0.00 31.71 2.29
3910 4855 4.881273 TGCGAGGCATACATCTTAAAACAT 59.119 37.500 0.00 0.00 31.71 2.71
4004 4949 9.416794 AGTAAGAAGATTGCGATATGATAGTTG 57.583 33.333 0.00 0.00 0.00 3.16
4026 4971 9.905713 ATTTATTGGAATGCTAACTCTGAGTAA 57.094 29.630 11.30 0.00 0.00 2.24
4088 5033 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
4099 5044 6.232513 TTGAGAAACAAGCTTGGGACAAGC 62.233 45.833 29.18 22.54 43.31 4.01
4100 5045 3.381272 TTGAGAAACAAGCTTGGGACAAG 59.619 43.478 29.18 3.71 37.48 3.16
4101 5046 3.360867 TTGAGAAACAAGCTTGGGACAA 58.639 40.909 29.18 21.59 37.48 3.18
4102 5047 2.727123 TGAGAAACAAGCTTGGGACA 57.273 45.000 29.18 17.71 0.00 4.02
4103 5048 4.301628 CATTTGAGAAACAAGCTTGGGAC 58.698 43.478 29.18 18.46 39.77 4.46
4104 5049 3.321682 CCATTTGAGAAACAAGCTTGGGA 59.678 43.478 29.18 7.03 39.77 4.37
4105 5050 3.321682 TCCATTTGAGAAACAAGCTTGGG 59.678 43.478 29.18 16.37 39.77 4.12
4107 5052 5.535333 ACATCCATTTGAGAAACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
4108 5053 5.796424 ACATCCATTTGAGAAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
4110 5055 7.093322 AGATACATCCATTTGAGAAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
4111 5056 8.341173 GCTAGATACATCCATTTGAGAAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
4113 5058 7.280876 GTGCTAGATACATCCATTTGAGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
4114 5059 7.497249 AGTGCTAGATACATCCATTTGAGAAAC 59.503 37.037 0.00 0.00 0.00 2.78
4117 5062 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
4118 5063 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
4120 5065 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
4122 5067 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
4123 5068 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
4124 5069 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
4125 5070 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
4137 5082 6.810911 AGATGTATCTAGCACCAAGTTAGTG 58.189 40.000 0.00 0.00 34.85 2.74
4138 5083 8.713708 ATAGATGTATCTAGCACCAAGTTAGT 57.286 34.615 7.57 0.00 42.20 2.24
4139 5084 9.988815 AAATAGATGTATCTAGCACCAAGTTAG 57.011 33.333 7.57 0.00 42.20 2.34
4140 5085 9.764363 CAAATAGATGTATCTAGCACCAAGTTA 57.236 33.333 7.57 0.00 42.20 2.24
4141 5086 8.486210 TCAAATAGATGTATCTAGCACCAAGTT 58.514 33.333 7.57 0.00 42.20 2.66
4142 5087 8.023021 TCAAATAGATGTATCTAGCACCAAGT 57.977 34.615 7.57 0.00 42.20 3.16
4143 5088 7.601886 CCTCAAATAGATGTATCTAGCACCAAG 59.398 40.741 7.57 1.72 42.20 3.61
4144 5089 7.445121 CCTCAAATAGATGTATCTAGCACCAA 58.555 38.462 7.57 0.00 42.20 3.67
4145 5090 6.014242 CCCTCAAATAGATGTATCTAGCACCA 60.014 42.308 7.57 0.00 42.20 4.17
4146 5091 6.211584 TCCCTCAAATAGATGTATCTAGCACC 59.788 42.308 7.57 0.00 42.20 5.01
4147 5092 7.093992 GTCCCTCAAATAGATGTATCTAGCAC 58.906 42.308 7.57 0.00 42.20 4.40
4148 5093 6.782494 TGTCCCTCAAATAGATGTATCTAGCA 59.218 38.462 7.57 0.00 42.20 3.49
4149 5094 7.233389 TGTCCCTCAAATAGATGTATCTAGC 57.767 40.000 7.57 0.00 42.20 3.42
4150 5095 7.816995 GCTTGTCCCTCAAATAGATGTATCTAG 59.183 40.741 7.57 0.00 36.19 2.43
4151 5096 7.256332 GGCTTGTCCCTCAAATAGATGTATCTA 60.256 40.741 4.22 4.22 36.64 1.98
4152 5097 6.465035 GGCTTGTCCCTCAAATAGATGTATCT 60.465 42.308 0.00 0.00 36.97 1.98
4153 5098 5.703130 GGCTTGTCCCTCAAATAGATGTATC 59.297 44.000 0.00 0.00 35.48 2.24
4154 5099 5.370880 AGGCTTGTCCCTCAAATAGATGTAT 59.629 40.000 0.00 0.00 35.48 2.29
4155 5100 4.721776 AGGCTTGTCCCTCAAATAGATGTA 59.278 41.667 0.00 0.00 35.48 2.29
4156 5101 3.525199 AGGCTTGTCCCTCAAATAGATGT 59.475 43.478 0.00 0.00 35.48 3.06
4157 5102 4.162040 AGGCTTGTCCCTCAAATAGATG 57.838 45.455 0.00 0.00 35.48 2.90
4158 5103 4.870021 AAGGCTTGTCCCTCAAATAGAT 57.130 40.909 0.00 0.00 35.48 1.98
4159 5104 4.657814 AAAGGCTTGTCCCTCAAATAGA 57.342 40.909 0.00 0.00 35.48 1.98
4160 5105 4.142600 CGAAAAGGCTTGTCCCTCAAATAG 60.143 45.833 11.78 0.00 35.48 1.73
4161 5106 3.756434 CGAAAAGGCTTGTCCCTCAAATA 59.244 43.478 11.78 0.00 35.48 1.40
4162 5107 2.558359 CGAAAAGGCTTGTCCCTCAAAT 59.442 45.455 11.78 0.00 35.48 2.32
4163 5108 1.953686 CGAAAAGGCTTGTCCCTCAAA 59.046 47.619 11.78 0.00 35.48 2.69
4164 5109 1.604604 CGAAAAGGCTTGTCCCTCAA 58.395 50.000 11.78 0.00 32.93 3.02
4165 5110 0.250727 CCGAAAAGGCTTGTCCCTCA 60.251 55.000 11.78 0.00 32.93 3.86
4166 5111 0.036306 TCCGAAAAGGCTTGTCCCTC 59.964 55.000 11.78 0.00 40.77 4.30
4167 5112 0.250770 GTCCGAAAAGGCTTGTCCCT 60.251 55.000 11.78 0.00 40.77 4.20
4168 5113 1.574702 CGTCCGAAAAGGCTTGTCCC 61.575 60.000 11.78 0.00 40.77 4.46
4169 5114 1.574702 CCGTCCGAAAAGGCTTGTCC 61.575 60.000 11.78 0.00 40.77 4.02
4170 5115 0.601841 TCCGTCCGAAAAGGCTTGTC 60.602 55.000 7.39 7.39 40.77 3.18
4171 5116 0.602905 CTCCGTCCGAAAAGGCTTGT 60.603 55.000 0.00 0.00 40.77 3.16
4172 5117 1.298859 CCTCCGTCCGAAAAGGCTTG 61.299 60.000 0.00 0.00 40.77 4.01
4173 5118 1.003718 CCTCCGTCCGAAAAGGCTT 60.004 57.895 0.00 0.00 40.77 4.35
4174 5119 2.663196 CCTCCGTCCGAAAAGGCT 59.337 61.111 0.00 0.00 40.77 4.58
4175 5120 2.436115 CCCTCCGTCCGAAAAGGC 60.436 66.667 0.00 0.00 40.77 4.35
4176 5121 1.218316 CTCCCTCCGTCCGAAAAGG 59.782 63.158 0.00 0.00 42.97 3.11
4177 5122 1.134560 CTACTCCCTCCGTCCGAAAAG 59.865 57.143 0.00 0.00 0.00 2.27
4178 5123 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
4179 5124 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
4180 5125 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
4181 5126 0.179000 GTACTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
4182 5127 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
4183 5128 2.134789 TTGTACTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
4184 5129 3.760684 TCTTTTGTACTACTCCCTCCGTC 59.239 47.826 0.00 0.00 0.00 4.79
4185 5130 3.762823 CTCTTTTGTACTACTCCCTCCGT 59.237 47.826 0.00 0.00 0.00 4.69
4186 5131 3.762823 ACTCTTTTGTACTACTCCCTCCG 59.237 47.826 0.00 0.00 0.00 4.63
4190 5135 5.678955 ATGGACTCTTTTGTACTACTCCC 57.321 43.478 0.00 0.00 0.00 4.30
4199 5144 7.682787 ATAGGACTGATATGGACTCTTTTGT 57.317 36.000 0.00 0.00 0.00 2.83
4233 5179 2.592102 AGTGATGGCTGGACAAATGT 57.408 45.000 0.00 0.00 0.00 2.71
4252 5198 9.354673 GATGATATATCCCAGAAAGGACAAAAA 57.645 33.333 10.25 0.00 39.24 1.94
4271 5217 4.141551 TGAAGCTTGGCTGTGAGATGATAT 60.142 41.667 2.10 0.00 39.62 1.63
4272 5218 3.198417 TGAAGCTTGGCTGTGAGATGATA 59.802 43.478 2.10 0.00 39.62 2.15
4273 5219 2.026542 TGAAGCTTGGCTGTGAGATGAT 60.027 45.455 2.10 0.00 39.62 2.45
4274 5220 1.348696 TGAAGCTTGGCTGTGAGATGA 59.651 47.619 2.10 0.00 39.62 2.92
4275 5221 1.738350 CTGAAGCTTGGCTGTGAGATG 59.262 52.381 2.10 0.00 39.62 2.90
4276 5222 1.350351 ACTGAAGCTTGGCTGTGAGAT 59.650 47.619 2.10 0.00 39.62 2.75
4277 5223 0.761187 ACTGAAGCTTGGCTGTGAGA 59.239 50.000 2.10 0.00 39.62 3.27
4278 5224 1.155042 GACTGAAGCTTGGCTGTGAG 58.845 55.000 2.10 0.00 39.62 3.51
4279 5225 0.469494 TGACTGAAGCTTGGCTGTGA 59.531 50.000 2.10 0.00 39.62 3.58
4280 5226 1.311859 TTGACTGAAGCTTGGCTGTG 58.688 50.000 2.10 0.00 39.62 3.66
4281 5227 1.884579 CATTGACTGAAGCTTGGCTGT 59.115 47.619 2.10 0.00 39.62 4.40
4282 5228 1.402456 GCATTGACTGAAGCTTGGCTG 60.402 52.381 2.10 0.00 39.62 4.85
4283 5229 0.886563 GCATTGACTGAAGCTTGGCT 59.113 50.000 2.10 0.00 42.56 4.75
4293 5239 4.475028 TGCTATTTCGTTTGCATTGACTG 58.525 39.130 0.00 0.00 0.00 3.51
4299 5245 9.748708 ATAACAATAATGCTATTTCGTTTGCAT 57.251 25.926 0.00 0.00 46.46 3.96
4320 5266 6.656632 TTTTTGGTGTCCTATTGCATAACA 57.343 33.333 0.00 0.00 0.00 2.41
4326 5272 6.873076 TCATTCAATTTTTGGTGTCCTATTGC 59.127 34.615 0.00 0.00 0.00 3.56
4331 5277 6.729690 TTCTCATTCAATTTTTGGTGTCCT 57.270 33.333 0.00 0.00 0.00 3.85
4350 5296 2.289133 ACTTCACCCTCGCTTCTTTCTC 60.289 50.000 0.00 0.00 0.00 2.87
4354 5300 3.983044 ATTACTTCACCCTCGCTTCTT 57.017 42.857 0.00 0.00 0.00 2.52
4359 5305 4.023536 TGAAACAAATTACTTCACCCTCGC 60.024 41.667 0.00 0.00 0.00 5.03
4360 5306 5.449304 GTGAAACAAATTACTTCACCCTCG 58.551 41.667 12.78 0.00 41.94 4.63
4377 5323 7.116233 ACACTGAACAAAAAGACATTGTGAAAC 59.884 33.333 0.00 0.00 39.98 2.78
4378 5324 7.151308 ACACTGAACAAAAAGACATTGTGAAA 58.849 30.769 0.00 0.00 39.98 2.69
4425 5375 5.659525 TCCCTATCCATACACTTTCGAAAGA 59.340 40.000 37.54 20.28 39.31 2.52
4426 5376 5.914033 TCCCTATCCATACACTTTCGAAAG 58.086 41.667 31.29 31.29 41.73 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.