Multiple sequence alignment - TraesCS1D01G167300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G167300 chr1D 100.000 5083 0 0 1 5083 238333518 238328436 0.000000e+00 9387.0
1 TraesCS1D01G167300 chr1D 76.923 351 70 10 208 554 400011878 400011535 6.720000e-44 189.0
2 TraesCS1D01G167300 chr1D 100.000 29 0 0 4112 4140 372835989 372835961 3.000000e-03 54.7
3 TraesCS1D01G167300 chr1A 95.484 3587 94 18 568 4111 301899542 301895981 0.000000e+00 5664.0
4 TraesCS1D01G167300 chr1A 91.497 882 35 18 4232 5083 301894986 301894115 0.000000e+00 1177.0
5 TraesCS1D01G167300 chr1A 78.158 467 93 9 5 467 474710249 474710710 6.440000e-74 289.0
6 TraesCS1D01G167300 chr1B 94.647 2802 83 22 550 3320 335972089 335974854 0.000000e+00 4281.0
7 TraesCS1D01G167300 chr1B 93.387 877 31 10 4216 5083 335975965 335976823 0.000000e+00 1273.0
8 TraesCS1D01G167300 chr1B 95.057 789 29 5 3322 4108 335975142 335975922 0.000000e+00 1232.0
9 TraesCS1D01G167300 chr1B 77.551 245 48 7 208 448 390471517 390471276 1.910000e-29 141.0
10 TraesCS1D01G167300 chr4D 79.787 564 94 13 1 558 47558253 47558802 4.770000e-105 392.0
11 TraesCS1D01G167300 chr3A 80.380 474 74 17 1 467 426868187 426867726 4.870000e-90 342.0
12 TraesCS1D01G167300 chr3A 78.095 420 81 11 17 431 430316778 430317191 6.530000e-64 255.0
13 TraesCS1D01G167300 chr3A 76.903 381 79 7 73 448 187245345 187245721 1.850000e-49 207.0
14 TraesCS1D01G167300 chr3B 79.717 424 74 10 4 422 17764274 17764690 3.850000e-76 296.0
15 TraesCS1D01G167300 chr3B 77.872 470 97 6 1 467 194275330 194274865 8.330000e-73 285.0
16 TraesCS1D01G167300 chr7A 78.005 441 75 17 4 439 531103619 531104042 1.820000e-64 257.0
17 TraesCS1D01G167300 chr5D 75.267 562 116 18 1 552 448685098 448685646 3.930000e-61 246.0
18 TraesCS1D01G167300 chrUn 76.389 432 89 10 1 425 28755023 28754598 2.380000e-53 220.0
19 TraesCS1D01G167300 chr7B 78.776 245 46 5 208 449 77568680 77568921 5.270000e-35 159.0
20 TraesCS1D01G167300 chr2D 97.222 36 1 0 4101 4136 644287777 644287742 1.530000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G167300 chr1D 238328436 238333518 5082 True 9387.0 9387 100.000000 1 5083 1 chr1D.!!$R1 5082
1 TraesCS1D01G167300 chr1A 301894115 301899542 5427 True 3420.5 5664 93.490500 568 5083 2 chr1A.!!$R1 4515
2 TraesCS1D01G167300 chr1B 335972089 335976823 4734 False 2262.0 4281 94.363667 550 5083 3 chr1B.!!$F1 4533
3 TraesCS1D01G167300 chr4D 47558253 47558802 549 False 392.0 392 79.787000 1 558 1 chr4D.!!$F1 557
4 TraesCS1D01G167300 chr5D 448685098 448685646 548 False 246.0 246 75.267000 1 552 1 chr5D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.035630 GAGGCAGTGAGAGGTTGCAT 60.036 55.0 0.00 0.0 39.54 3.96 F
483 484 0.038744 CAGACCTGTTGGATGGCCTT 59.961 55.0 3.32 0.0 37.04 4.35 F
571 572 0.182775 AAAGTTGGGGCGAGTGAGTT 59.817 50.0 0.00 0.0 0.00 3.01 F
1741 1847 0.473886 GGGGGAGGATAAGGCAGCTA 60.474 60.0 0.00 0.0 0.00 3.32 F
2560 2693 0.036858 AGGTTTTCGCCTCTCTCTGC 60.037 55.0 0.00 0.0 32.39 4.26 F
3739 4164 0.038166 CCAAGTGCCCAGCTCCTAAA 59.962 55.0 0.00 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1848 0.038166 TCCCTTGCCCTGAATCACAC 59.962 55.0 0.00 0.00 0.00 3.82 R
1743 1849 0.329261 CTCCCTTGCCCTGAATCACA 59.671 55.0 0.00 0.00 0.00 3.58 R
1745 1851 0.329261 CACTCCCTTGCCCTGAATCA 59.671 55.0 0.00 0.00 0.00 2.57 R
3233 3371 0.401738 ACCACATGGCACTACAAGCT 59.598 50.0 0.00 0.00 39.32 3.74 R
3796 4223 0.759346 AGTTCAGGCACTTCGAAGGT 59.241 50.0 27.86 11.72 34.60 3.50 R
5058 6395 0.038159 AAAGAGAGCTCCACGTTCGG 60.038 55.0 10.93 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.477975 CCGGTGAGGCGAGTCGTC 62.478 72.222 9.65 9.65 0.00 4.20
18 19 4.477975 CGGTGAGGCGAGTCGTCC 62.478 72.222 14.65 15.15 28.67 4.79
19 20 4.477975 GGTGAGGCGAGTCGTCCG 62.478 72.222 14.65 0.00 28.67 4.79
20 21 4.477975 GTGAGGCGAGTCGTCCGG 62.478 72.222 14.65 0.00 28.67 5.14
27 28 4.773117 GAGTCGTCCGGGTGCGTC 62.773 72.222 0.00 2.34 0.00 5.19
29 30 4.651008 GTCGTCCGGGTGCGTCAA 62.651 66.667 0.00 0.00 0.00 3.18
30 31 3.687102 TCGTCCGGGTGCGTCAAT 61.687 61.111 0.00 0.00 0.00 2.57
31 32 3.487202 CGTCCGGGTGCGTCAATG 61.487 66.667 0.00 0.00 0.00 2.82
32 33 3.799755 GTCCGGGTGCGTCAATGC 61.800 66.667 0.00 0.00 0.00 3.56
48 49 4.819761 GCGCGATGCAGGAGTGGA 62.820 66.667 12.10 0.00 45.45 4.02
49 50 2.107750 CGCGATGCAGGAGTGGAT 59.892 61.111 0.00 0.00 37.46 3.41
50 51 1.522355 CGCGATGCAGGAGTGGATT 60.522 57.895 0.00 0.00 34.30 3.01
51 52 1.091771 CGCGATGCAGGAGTGGATTT 61.092 55.000 0.00 0.00 34.30 2.17
52 53 0.659957 GCGATGCAGGAGTGGATTTC 59.340 55.000 0.00 0.00 34.30 2.17
53 54 1.745141 GCGATGCAGGAGTGGATTTCT 60.745 52.381 0.00 0.00 34.30 2.52
54 55 2.208431 CGATGCAGGAGTGGATTTCTC 58.792 52.381 0.00 0.00 34.30 2.87
55 56 2.208431 GATGCAGGAGTGGATTTCTCG 58.792 52.381 0.00 0.00 34.30 4.04
56 57 0.250234 TGCAGGAGTGGATTTCTCGG 59.750 55.000 0.00 0.00 33.26 4.63
57 58 1.092345 GCAGGAGTGGATTTCTCGGC 61.092 60.000 0.00 0.00 33.26 5.54
58 59 0.462759 CAGGAGTGGATTTCTCGGCC 60.463 60.000 0.00 0.00 33.26 6.13
59 60 1.521681 GGAGTGGATTTCTCGGCCG 60.522 63.158 22.12 22.12 33.26 6.13
60 61 1.521681 GAGTGGATTTCTCGGCCGG 60.522 63.158 27.83 16.54 0.00 6.13
61 62 3.202706 GTGGATTTCTCGGCCGGC 61.203 66.667 27.83 21.18 0.00 6.13
62 63 4.830765 TGGATTTCTCGGCCGGCG 62.831 66.667 27.83 17.20 0.00 6.46
63 64 4.524318 GGATTTCTCGGCCGGCGA 62.524 66.667 27.83 19.40 0.00 5.54
64 65 2.962253 GATTTCTCGGCCGGCGAG 60.962 66.667 32.35 32.35 35.05 5.03
74 75 2.203070 CCGGCGAGCCTGCTTAAT 60.203 61.111 9.30 0.00 34.52 1.40
75 76 2.537560 CCGGCGAGCCTGCTTAATG 61.538 63.158 9.30 0.00 34.52 1.90
76 77 1.521457 CGGCGAGCCTGCTTAATGA 60.521 57.895 12.70 0.00 34.52 2.57
77 78 1.766143 CGGCGAGCCTGCTTAATGAC 61.766 60.000 12.70 0.00 34.52 3.06
78 79 1.638467 GCGAGCCTGCTTAATGACG 59.362 57.895 0.00 0.00 0.00 4.35
79 80 1.766143 GCGAGCCTGCTTAATGACGG 61.766 60.000 0.00 0.00 0.00 4.79
80 81 1.766143 CGAGCCTGCTTAATGACGGC 61.766 60.000 0.00 0.00 40.99 5.68
81 82 0.744414 GAGCCTGCTTAATGACGGCA 60.744 55.000 0.00 0.00 43.07 5.69
82 83 0.107017 AGCCTGCTTAATGACGGCAT 60.107 50.000 0.00 0.00 43.07 4.40
83 84 1.140852 AGCCTGCTTAATGACGGCATA 59.859 47.619 2.90 0.00 43.07 3.14
84 85 1.264288 GCCTGCTTAATGACGGCATAC 59.736 52.381 2.90 0.00 40.41 2.39
85 86 2.560504 CCTGCTTAATGACGGCATACA 58.439 47.619 2.90 0.00 35.37 2.29
86 87 2.545526 CCTGCTTAATGACGGCATACAG 59.454 50.000 2.90 10.25 35.37 2.74
87 88 3.457234 CTGCTTAATGACGGCATACAGA 58.543 45.455 2.90 0.00 35.37 3.41
88 89 3.194861 TGCTTAATGACGGCATACAGAC 58.805 45.455 2.90 0.92 33.44 3.51
89 90 3.194861 GCTTAATGACGGCATACAGACA 58.805 45.455 2.90 0.00 33.44 3.41
90 91 3.621268 GCTTAATGACGGCATACAGACAA 59.379 43.478 2.90 0.00 33.44 3.18
91 92 4.273480 GCTTAATGACGGCATACAGACAAT 59.727 41.667 2.90 0.00 33.44 2.71
92 93 5.559035 GCTTAATGACGGCATACAGACAATC 60.559 44.000 2.90 0.00 33.44 2.67
93 94 3.541996 ATGACGGCATACAGACAATCA 57.458 42.857 0.00 0.00 31.57 2.57
94 95 3.326836 TGACGGCATACAGACAATCAA 57.673 42.857 0.00 0.00 0.00 2.57
95 96 3.000041 TGACGGCATACAGACAATCAAC 59.000 45.455 0.00 0.00 0.00 3.18
96 97 1.999735 ACGGCATACAGACAATCAACG 59.000 47.619 0.00 0.00 0.00 4.10
97 98 2.267426 CGGCATACAGACAATCAACGA 58.733 47.619 0.00 0.00 0.00 3.85
98 99 2.029244 CGGCATACAGACAATCAACGAC 59.971 50.000 0.00 0.00 0.00 4.34
99 100 3.000041 GGCATACAGACAATCAACGACA 59.000 45.455 0.00 0.00 0.00 4.35
100 101 3.623060 GGCATACAGACAATCAACGACAT 59.377 43.478 0.00 0.00 0.00 3.06
101 102 4.094887 GGCATACAGACAATCAACGACATT 59.905 41.667 0.00 0.00 0.00 2.71
102 103 5.023920 GCATACAGACAATCAACGACATTG 58.976 41.667 0.00 0.00 39.94 2.82
109 110 1.856688 TCAACGACATTGAACGGCG 59.143 52.632 4.80 4.80 44.59 6.46
110 111 1.792057 CAACGACATTGAACGGCGC 60.792 57.895 6.90 0.00 41.23 6.53
111 112 2.248135 AACGACATTGAACGGCGCA 61.248 52.632 10.83 0.00 0.00 6.09
112 113 1.573829 AACGACATTGAACGGCGCAT 61.574 50.000 10.83 0.00 0.00 4.73
113 114 0.738063 ACGACATTGAACGGCGCATA 60.738 50.000 10.83 0.00 0.00 3.14
114 115 0.043053 CGACATTGAACGGCGCATAG 60.043 55.000 10.83 1.82 0.00 2.23
115 116 1.006832 GACATTGAACGGCGCATAGT 58.993 50.000 10.83 2.59 0.00 2.12
116 117 2.198406 GACATTGAACGGCGCATAGTA 58.802 47.619 10.83 0.00 0.00 1.82
117 118 2.201732 ACATTGAACGGCGCATAGTAG 58.798 47.619 10.83 0.00 0.00 2.57
118 119 2.159156 ACATTGAACGGCGCATAGTAGA 60.159 45.455 10.83 0.00 0.00 2.59
119 120 2.882927 TTGAACGGCGCATAGTAGAT 57.117 45.000 10.83 0.00 0.00 1.98
120 121 3.994204 TTGAACGGCGCATAGTAGATA 57.006 42.857 10.83 0.00 0.00 1.98
121 122 4.514781 TTGAACGGCGCATAGTAGATAT 57.485 40.909 10.83 0.00 0.00 1.63
122 123 4.514781 TGAACGGCGCATAGTAGATATT 57.485 40.909 10.83 0.00 0.00 1.28
123 124 4.878439 TGAACGGCGCATAGTAGATATTT 58.122 39.130 10.83 0.00 0.00 1.40
124 125 4.684242 TGAACGGCGCATAGTAGATATTTG 59.316 41.667 10.83 0.00 0.00 2.32
125 126 4.252971 ACGGCGCATAGTAGATATTTGT 57.747 40.909 10.83 0.00 0.00 2.83
126 127 4.235360 ACGGCGCATAGTAGATATTTGTC 58.765 43.478 10.83 0.00 0.00 3.18
127 128 3.612860 CGGCGCATAGTAGATATTTGTCC 59.387 47.826 10.83 0.00 0.00 4.02
128 129 3.933332 GGCGCATAGTAGATATTTGTCCC 59.067 47.826 10.83 0.00 0.00 4.46
129 130 4.562757 GGCGCATAGTAGATATTTGTCCCA 60.563 45.833 10.83 0.00 0.00 4.37
130 131 5.178797 GCGCATAGTAGATATTTGTCCCAT 58.821 41.667 0.30 0.00 0.00 4.00
131 132 5.292101 GCGCATAGTAGATATTTGTCCCATC 59.708 44.000 0.30 0.00 0.00 3.51
132 133 5.812642 CGCATAGTAGATATTTGTCCCATCC 59.187 44.000 0.00 0.00 0.00 3.51
133 134 6.116126 GCATAGTAGATATTTGTCCCATCCC 58.884 44.000 0.00 0.00 0.00 3.85
134 135 4.891992 AGTAGATATTTGTCCCATCCCG 57.108 45.455 0.00 0.00 0.00 5.14
135 136 4.232091 AGTAGATATTTGTCCCATCCCGT 58.768 43.478 0.00 0.00 0.00 5.28
136 137 3.771577 AGATATTTGTCCCATCCCGTC 57.228 47.619 0.00 0.00 0.00 4.79
137 138 2.372172 AGATATTTGTCCCATCCCGTCC 59.628 50.000 0.00 0.00 0.00 4.79
138 139 1.585895 TATTTGTCCCATCCCGTCCA 58.414 50.000 0.00 0.00 0.00 4.02
139 140 0.255890 ATTTGTCCCATCCCGTCCAG 59.744 55.000 0.00 0.00 0.00 3.86
140 141 1.131303 TTTGTCCCATCCCGTCCAGT 61.131 55.000 0.00 0.00 0.00 4.00
141 142 1.550130 TTGTCCCATCCCGTCCAGTC 61.550 60.000 0.00 0.00 0.00 3.51
142 143 1.987855 GTCCCATCCCGTCCAGTCA 60.988 63.158 0.00 0.00 0.00 3.41
143 144 1.987855 TCCCATCCCGTCCAGTCAC 60.988 63.158 0.00 0.00 0.00 3.67
144 145 2.290287 CCCATCCCGTCCAGTCACA 61.290 63.158 0.00 0.00 0.00 3.58
145 146 1.079127 CCATCCCGTCCAGTCACAC 60.079 63.158 0.00 0.00 0.00 3.82
146 147 1.446099 CATCCCGTCCAGTCACACG 60.446 63.158 0.00 0.00 35.72 4.49
147 148 1.906824 ATCCCGTCCAGTCACACGT 60.907 57.895 0.00 0.00 34.06 4.49
148 149 1.874345 ATCCCGTCCAGTCACACGTC 61.874 60.000 0.00 0.00 34.06 4.34
149 150 2.561956 CCCGTCCAGTCACACGTCT 61.562 63.158 0.00 0.00 34.06 4.18
150 151 1.081376 CCGTCCAGTCACACGTCTC 60.081 63.158 0.00 0.00 34.06 3.36
151 152 1.081376 CGTCCAGTCACACGTCTCC 60.081 63.158 0.00 0.00 0.00 3.71
152 153 1.081376 GTCCAGTCACACGTCTCCG 60.081 63.158 0.00 0.00 40.83 4.63
153 154 2.258591 CCAGTCACACGTCTCCGG 59.741 66.667 0.00 0.00 38.78 5.14
154 155 2.430921 CAGTCACACGTCTCCGGC 60.431 66.667 0.00 0.00 38.78 6.13
155 156 2.910479 AGTCACACGTCTCCGGCA 60.910 61.111 0.00 0.00 38.78 5.69
156 157 2.261671 GTCACACGTCTCCGGCAT 59.738 61.111 0.00 0.00 38.78 4.40
157 158 1.374252 GTCACACGTCTCCGGCATT 60.374 57.895 0.00 0.00 38.78 3.56
158 159 1.374125 TCACACGTCTCCGGCATTG 60.374 57.895 0.00 0.00 38.78 2.82
159 160 1.374125 CACACGTCTCCGGCATTGA 60.374 57.895 0.00 0.00 38.78 2.57
160 161 0.948623 CACACGTCTCCGGCATTGAA 60.949 55.000 0.00 0.00 38.78 2.69
161 162 0.949105 ACACGTCTCCGGCATTGAAC 60.949 55.000 0.00 0.00 38.78 3.18
162 163 0.948623 CACGTCTCCGGCATTGAACA 60.949 55.000 0.00 0.00 38.78 3.18
163 164 0.670546 ACGTCTCCGGCATTGAACAG 60.671 55.000 0.00 0.00 38.78 3.16
164 165 1.361668 CGTCTCCGGCATTGAACAGG 61.362 60.000 0.00 0.00 0.00 4.00
165 166 1.377202 TCTCCGGCATTGAACAGGC 60.377 57.895 0.00 0.00 0.00 4.85
168 169 4.817063 CGGCATTGAACAGGCGCG 62.817 66.667 0.00 0.00 46.46 6.86
169 170 4.481112 GGCATTGAACAGGCGCGG 62.481 66.667 8.83 0.00 0.00 6.46
170 171 3.430862 GCATTGAACAGGCGCGGA 61.431 61.111 8.83 0.00 0.00 5.54
171 172 2.480555 CATTGAACAGGCGCGGAC 59.519 61.111 8.83 0.00 0.00 4.79
172 173 2.746277 ATTGAACAGGCGCGGACC 60.746 61.111 8.83 0.15 0.00 4.46
184 185 3.633116 CGGACCCCAAAGACCCGT 61.633 66.667 0.00 0.00 35.83 5.28
185 186 2.350134 GGACCCCAAAGACCCGTC 59.650 66.667 0.00 0.00 0.00 4.79
186 187 2.047560 GACCCCAAAGACCCGTCG 60.048 66.667 0.00 0.00 34.09 5.12
187 188 2.845795 ACCCCAAAGACCCGTCGT 60.846 61.111 0.00 0.00 34.09 4.34
188 189 2.358247 CCCCAAAGACCCGTCGTG 60.358 66.667 0.00 0.00 34.09 4.35
189 190 2.358247 CCCAAAGACCCGTCGTGG 60.358 66.667 11.59 11.59 38.55 4.94
190 191 2.738480 CCAAAGACCCGTCGTGGA 59.262 61.111 12.71 0.00 42.00 4.02
191 192 1.666872 CCAAAGACCCGTCGTGGAC 60.667 63.158 12.71 1.30 42.00 4.02
219 220 2.099062 GCTGACGCCGCTTCAATG 59.901 61.111 0.79 0.00 0.00 2.82
220 221 2.390599 GCTGACGCCGCTTCAATGA 61.391 57.895 0.79 0.00 0.00 2.57
221 222 1.421485 CTGACGCCGCTTCAATGAC 59.579 57.895 0.79 0.00 0.00 3.06
222 223 2.283780 CTGACGCCGCTTCAATGACG 62.284 60.000 0.79 0.00 0.00 4.35
227 228 3.093278 CGCTTCAATGACGGAGGC 58.907 61.111 0.00 0.00 34.38 4.70
228 229 1.741401 CGCTTCAATGACGGAGGCA 60.741 57.895 0.00 0.00 37.22 4.75
229 230 1.699656 CGCTTCAATGACGGAGGCAG 61.700 60.000 0.00 0.00 37.22 4.85
230 231 0.674895 GCTTCAATGACGGAGGCAGT 60.675 55.000 0.00 0.00 37.33 4.40
231 232 1.081892 CTTCAATGACGGAGGCAGTG 58.918 55.000 0.00 0.00 33.05 3.66
232 233 0.684535 TTCAATGACGGAGGCAGTGA 59.315 50.000 1.60 1.60 38.41 3.41
233 234 0.247460 TCAATGACGGAGGCAGTGAG 59.753 55.000 1.60 0.00 35.70 3.51
234 235 0.247460 CAATGACGGAGGCAGTGAGA 59.753 55.000 0.00 0.00 33.54 3.27
235 236 0.534412 AATGACGGAGGCAGTGAGAG 59.466 55.000 0.00 0.00 0.00 3.20
236 237 1.326213 ATGACGGAGGCAGTGAGAGG 61.326 60.000 0.00 0.00 0.00 3.69
237 238 1.979693 GACGGAGGCAGTGAGAGGT 60.980 63.158 0.00 0.00 0.00 3.85
238 239 1.534235 ACGGAGGCAGTGAGAGGTT 60.534 57.895 0.00 0.00 0.00 3.50
239 240 1.079543 CGGAGGCAGTGAGAGGTTG 60.080 63.158 0.00 0.00 0.00 3.77
240 241 1.376553 GGAGGCAGTGAGAGGTTGC 60.377 63.158 0.00 0.00 37.11 4.17
241 242 1.372683 GAGGCAGTGAGAGGTTGCA 59.627 57.895 0.00 0.00 39.54 4.08
242 243 0.035630 GAGGCAGTGAGAGGTTGCAT 60.036 55.000 0.00 0.00 39.54 3.96
243 244 0.035630 AGGCAGTGAGAGGTTGCATC 60.036 55.000 0.00 0.00 39.54 3.91
244 245 1.028868 GGCAGTGAGAGGTTGCATCC 61.029 60.000 5.61 5.61 39.54 3.51
245 246 1.364626 GCAGTGAGAGGTTGCATCCG 61.365 60.000 8.17 0.00 37.75 4.18
246 247 1.078848 AGTGAGAGGTTGCATCCGC 60.079 57.895 9.34 9.34 39.24 5.54
247 248 2.109126 GTGAGAGGTTGCATCCGCC 61.109 63.158 13.28 7.39 37.32 6.13
248 249 2.293318 TGAGAGGTTGCATCCGCCT 61.293 57.895 13.28 11.66 37.32 5.52
249 250 1.078143 GAGAGGTTGCATCCGCCTT 60.078 57.895 13.28 0.00 37.32 4.35
250 251 1.372087 GAGAGGTTGCATCCGCCTTG 61.372 60.000 13.28 0.00 37.32 3.61
251 252 1.377202 GAGGTTGCATCCGCCTTGA 60.377 57.895 8.17 0.00 37.32 3.02
252 253 1.372087 GAGGTTGCATCCGCCTTGAG 61.372 60.000 8.17 0.00 37.32 3.02
253 254 2.486966 GTTGCATCCGCCTTGAGC 59.513 61.111 0.00 0.00 37.32 4.26
254 255 2.751436 TTGCATCCGCCTTGAGCC 60.751 61.111 0.00 0.00 38.78 4.70
262 263 2.672996 GCCTTGAGCCGCCTTCAA 60.673 61.111 0.00 0.00 34.35 2.69
263 264 2.048603 GCCTTGAGCCGCCTTCAAT 61.049 57.895 0.00 0.00 34.33 2.57
264 265 1.805254 CCTTGAGCCGCCTTCAATG 59.195 57.895 0.00 0.00 34.33 2.82
265 266 0.962356 CCTTGAGCCGCCTTCAATGT 60.962 55.000 0.00 0.00 34.33 2.71
266 267 0.883833 CTTGAGCCGCCTTCAATGTT 59.116 50.000 0.00 0.00 34.33 2.71
267 268 0.597568 TTGAGCCGCCTTCAATGTTG 59.402 50.000 0.00 0.00 30.03 3.33
268 269 0.250684 TGAGCCGCCTTCAATGTTGA 60.251 50.000 0.00 0.00 34.92 3.18
269 270 0.881118 GAGCCGCCTTCAATGTTGAA 59.119 50.000 7.84 7.84 44.31 2.69
270 271 1.474077 GAGCCGCCTTCAATGTTGAAT 59.526 47.619 8.48 0.00 45.26 2.57
271 272 1.203052 AGCCGCCTTCAATGTTGAATG 59.797 47.619 8.48 7.37 45.26 2.67
272 273 1.736696 GCCGCCTTCAATGTTGAATGG 60.737 52.381 8.48 12.06 45.26 3.16
273 274 1.632422 CGCCTTCAATGTTGAATGGC 58.368 50.000 23.88 23.88 45.26 4.40
274 275 1.632422 GCCTTCAATGTTGAATGGCG 58.368 50.000 21.65 8.43 45.26 5.69
275 276 1.632422 CCTTCAATGTTGAATGGCGC 58.368 50.000 8.48 0.00 45.26 6.53
276 277 1.261989 CTTCAATGTTGAATGGCGCG 58.738 50.000 0.00 0.00 45.26 6.86
277 278 0.732196 TTCAATGTTGAATGGCGCGC 60.732 50.000 25.94 25.94 41.88 6.86
278 279 1.153978 CAATGTTGAATGGCGCGCT 60.154 52.632 32.29 11.92 0.00 5.92
279 280 1.135699 CAATGTTGAATGGCGCGCTC 61.136 55.000 32.29 21.27 0.00 5.03
280 281 1.308069 AATGTTGAATGGCGCGCTCT 61.308 50.000 32.29 15.86 0.00 4.09
281 282 0.461870 ATGTTGAATGGCGCGCTCTA 60.462 50.000 32.29 18.05 0.00 2.43
282 283 1.348594 GTTGAATGGCGCGCTCTAC 59.651 57.895 32.29 22.33 0.00 2.59
283 284 1.079474 TTGAATGGCGCGCTCTACA 60.079 52.632 32.29 20.78 0.00 2.74
284 285 0.672091 TTGAATGGCGCGCTCTACAA 60.672 50.000 32.29 25.81 0.00 2.41
285 286 1.348594 GAATGGCGCGCTCTACAAC 59.651 57.895 32.29 12.98 0.00 3.32
286 287 2.348140 GAATGGCGCGCTCTACAACG 62.348 60.000 32.29 0.00 0.00 4.10
290 291 2.885644 CGCGCTCTACAACGGCAT 60.886 61.111 5.56 0.00 0.00 4.40
291 292 2.703409 GCGCTCTACAACGGCATG 59.297 61.111 0.00 0.00 0.00 4.06
292 293 1.809619 GCGCTCTACAACGGCATGA 60.810 57.895 0.00 0.00 0.00 3.07
293 294 1.756375 GCGCTCTACAACGGCATGAG 61.756 60.000 0.00 0.00 0.00 2.90
294 295 0.458543 CGCTCTACAACGGCATGAGT 60.459 55.000 0.00 0.00 0.00 3.41
295 296 1.002366 GCTCTACAACGGCATGAGTG 58.998 55.000 0.00 0.00 0.00 3.51
312 313 3.337889 GCGTGCAGCTTGTGTCGA 61.338 61.111 0.00 0.00 44.04 4.20
313 314 2.881266 GCGTGCAGCTTGTGTCGAA 61.881 57.895 0.00 0.00 44.04 3.71
314 315 1.862123 CGTGCAGCTTGTGTCGAAT 59.138 52.632 0.00 0.00 0.00 3.34
315 316 0.451628 CGTGCAGCTTGTGTCGAATG 60.452 55.000 0.00 0.00 0.00 2.67
316 317 0.110056 GTGCAGCTTGTGTCGAATGG 60.110 55.000 0.00 0.00 0.00 3.16
317 318 1.236616 TGCAGCTTGTGTCGAATGGG 61.237 55.000 0.00 0.00 0.00 4.00
318 319 0.955428 GCAGCTTGTGTCGAATGGGA 60.955 55.000 0.00 0.00 0.00 4.37
319 320 1.522668 CAGCTTGTGTCGAATGGGAA 58.477 50.000 0.00 0.00 0.00 3.97
320 321 1.197721 CAGCTTGTGTCGAATGGGAAC 59.802 52.381 0.00 0.00 0.00 3.62
321 322 0.165944 GCTTGTGTCGAATGGGAACG 59.834 55.000 0.00 0.00 0.00 3.95
322 323 0.165944 CTTGTGTCGAATGGGAACGC 59.834 55.000 0.00 0.00 0.00 4.84
323 324 1.561717 TTGTGTCGAATGGGAACGCG 61.562 55.000 3.53 3.53 0.00 6.01
324 325 3.115892 TGTCGAATGGGAACGCGC 61.116 61.111 5.73 0.00 0.00 6.86
325 326 3.115892 GTCGAATGGGAACGCGCA 61.116 61.111 5.73 0.00 41.50 6.09
326 327 3.115892 TCGAATGGGAACGCGCAC 61.116 61.111 5.73 0.00 39.97 5.34
327 328 3.118454 CGAATGGGAACGCGCACT 61.118 61.111 5.73 0.00 39.97 4.40
328 329 2.480555 GAATGGGAACGCGCACTG 59.519 61.111 5.73 0.00 39.97 3.66
329 330 3.039202 GAATGGGAACGCGCACTGG 62.039 63.158 5.73 0.00 39.97 4.00
340 341 2.202987 GCACTGGCGAGGGATGAG 60.203 66.667 0.45 0.00 0.00 2.90
341 342 2.725312 GCACTGGCGAGGGATGAGA 61.725 63.158 0.45 0.00 0.00 3.27
342 343 1.440893 CACTGGCGAGGGATGAGAG 59.559 63.158 0.00 0.00 0.00 3.20
343 344 1.039785 CACTGGCGAGGGATGAGAGA 61.040 60.000 0.00 0.00 0.00 3.10
344 345 0.105760 ACTGGCGAGGGATGAGAGAT 60.106 55.000 0.00 0.00 0.00 2.75
345 346 1.047002 CTGGCGAGGGATGAGAGATT 58.953 55.000 0.00 0.00 0.00 2.40
346 347 1.415659 CTGGCGAGGGATGAGAGATTT 59.584 52.381 0.00 0.00 0.00 2.17
347 348 1.839994 TGGCGAGGGATGAGAGATTTT 59.160 47.619 0.00 0.00 0.00 1.82
348 349 3.038280 TGGCGAGGGATGAGAGATTTTA 58.962 45.455 0.00 0.00 0.00 1.52
349 350 3.454447 TGGCGAGGGATGAGAGATTTTAA 59.546 43.478 0.00 0.00 0.00 1.52
350 351 4.103153 TGGCGAGGGATGAGAGATTTTAAT 59.897 41.667 0.00 0.00 0.00 1.40
351 352 4.453819 GGCGAGGGATGAGAGATTTTAATG 59.546 45.833 0.00 0.00 0.00 1.90
352 353 4.453819 GCGAGGGATGAGAGATTTTAATGG 59.546 45.833 0.00 0.00 0.00 3.16
353 354 4.999950 CGAGGGATGAGAGATTTTAATGGG 59.000 45.833 0.00 0.00 0.00 4.00
354 355 5.221722 CGAGGGATGAGAGATTTTAATGGGA 60.222 44.000 0.00 0.00 0.00 4.37
355 356 5.946486 AGGGATGAGAGATTTTAATGGGAC 58.054 41.667 0.00 0.00 0.00 4.46
367 368 4.631740 TGGGACAGGGCGGTCAGA 62.632 66.667 9.66 0.00 39.59 3.27
368 369 3.319198 GGGACAGGGCGGTCAGAA 61.319 66.667 9.66 0.00 39.59 3.02
369 370 2.266055 GGACAGGGCGGTCAGAAG 59.734 66.667 9.66 0.00 39.59 2.85
370 371 2.283529 GGACAGGGCGGTCAGAAGA 61.284 63.158 9.66 0.00 39.59 2.87
371 372 1.216710 GACAGGGCGGTCAGAAGAG 59.783 63.158 3.40 0.00 37.73 2.85
372 373 2.232298 GACAGGGCGGTCAGAAGAGG 62.232 65.000 3.40 0.00 37.73 3.69
373 374 2.685380 AGGGCGGTCAGAAGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
374 375 3.003763 GGGCGGTCAGAAGAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
375 376 2.266055 GGCGGTCAGAAGAGGGTG 59.734 66.667 0.00 0.00 0.00 4.61
376 377 2.584391 GGCGGTCAGAAGAGGGTGT 61.584 63.158 0.00 0.00 0.00 4.16
377 378 1.079750 GCGGTCAGAAGAGGGTGTC 60.080 63.158 0.00 0.00 0.00 3.67
378 379 1.213013 CGGTCAGAAGAGGGTGTCG 59.787 63.158 0.00 0.00 0.00 4.35
379 380 1.592223 GGTCAGAAGAGGGTGTCGG 59.408 63.158 0.00 0.00 0.00 4.79
380 381 0.898789 GGTCAGAAGAGGGTGTCGGA 60.899 60.000 0.00 0.00 0.00 4.55
381 382 1.187087 GTCAGAAGAGGGTGTCGGAT 58.813 55.000 0.00 0.00 0.00 4.18
382 383 1.135333 GTCAGAAGAGGGTGTCGGATC 59.865 57.143 0.00 0.00 0.00 3.36
383 384 0.101399 CAGAAGAGGGTGTCGGATCG 59.899 60.000 0.00 0.00 0.00 3.69
384 385 1.038130 AGAAGAGGGTGTCGGATCGG 61.038 60.000 0.00 0.00 0.00 4.18
385 386 1.305046 AAGAGGGTGTCGGATCGGT 60.305 57.895 0.00 0.00 0.00 4.69
386 387 0.903454 AAGAGGGTGTCGGATCGGTT 60.903 55.000 0.00 0.00 0.00 4.44
387 388 1.141234 GAGGGTGTCGGATCGGTTC 59.859 63.158 0.00 0.00 0.00 3.62
388 389 2.202703 GGGTGTCGGATCGGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
389 390 2.202703 GGTGTCGGATCGGTTCGG 60.203 66.667 0.00 0.00 0.00 4.30
390 391 2.703798 GGTGTCGGATCGGTTCGGA 61.704 63.158 0.00 0.00 0.00 4.55
392 393 3.194719 GTCGGATCGGTTCGGACT 58.805 61.111 15.49 0.00 46.06 3.85
393 394 1.063811 GTCGGATCGGTTCGGACTC 59.936 63.158 15.49 0.00 46.06 3.36
394 395 2.117156 TCGGATCGGTTCGGACTCC 61.117 63.158 0.00 0.00 0.00 3.85
395 396 2.813200 GGATCGGTTCGGACTCCC 59.187 66.667 0.00 0.00 0.00 4.30
420 421 3.663202 CCCCCACGTTTTTCTCCG 58.337 61.111 0.00 0.00 0.00 4.63
421 422 1.969589 CCCCCACGTTTTTCTCCGG 60.970 63.158 0.00 0.00 0.00 5.14
422 423 1.228033 CCCCACGTTTTTCTCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
423 424 0.820482 CCCCACGTTTTTCTCCGGTT 60.820 55.000 0.00 0.00 0.00 4.44
424 425 1.026584 CCCACGTTTTTCTCCGGTTT 58.973 50.000 0.00 0.00 0.00 3.27
425 426 2.220313 CCCACGTTTTTCTCCGGTTTA 58.780 47.619 0.00 0.00 0.00 2.01
426 427 2.031769 CCCACGTTTTTCTCCGGTTTAC 60.032 50.000 0.00 0.00 0.00 2.01
427 428 2.348779 CCACGTTTTTCTCCGGTTTACG 60.349 50.000 0.00 7.02 43.80 3.18
439 440 3.363788 CGGTTTACGGAAGAAATCGTG 57.636 47.619 0.00 0.00 40.05 4.35
440 441 2.733026 CGGTTTACGGAAGAAATCGTGT 59.267 45.455 0.00 0.00 40.05 4.49
441 442 3.181537 CGGTTTACGGAAGAAATCGTGTC 60.182 47.826 0.00 0.00 40.05 3.67
442 443 3.124128 GGTTTACGGAAGAAATCGTGTCC 59.876 47.826 0.00 0.00 40.05 4.02
445 446 3.826637 GGAAGAAATCGTGTCCGGA 57.173 52.632 0.00 0.00 33.95 5.14
446 447 1.356938 GGAAGAAATCGTGTCCGGAC 58.643 55.000 28.17 28.17 33.95 4.79
447 448 1.356938 GAAGAAATCGTGTCCGGACC 58.643 55.000 31.19 20.60 33.95 4.46
448 449 0.389426 AAGAAATCGTGTCCGGACCG 60.389 55.000 31.19 29.74 33.95 4.79
449 450 2.433664 AAATCGTGTCCGGACCGC 60.434 61.111 31.19 21.85 33.95 5.68
450 451 3.229156 AAATCGTGTCCGGACCGCA 62.229 57.895 31.19 20.91 33.95 5.69
451 452 3.927163 AATCGTGTCCGGACCGCAC 62.927 63.158 31.19 21.21 33.95 5.34
467 468 2.203800 GCACCACGAATCGATACAGA 57.796 50.000 10.55 0.00 0.00 3.41
468 469 1.852895 GCACCACGAATCGATACAGAC 59.147 52.381 10.55 0.00 0.00 3.51
469 470 2.460918 CACCACGAATCGATACAGACC 58.539 52.381 10.55 0.00 0.00 3.85
470 471 2.099263 CACCACGAATCGATACAGACCT 59.901 50.000 10.55 0.00 0.00 3.85
471 472 2.099263 ACCACGAATCGATACAGACCTG 59.901 50.000 10.55 0.00 0.00 4.00
472 473 2.099263 CCACGAATCGATACAGACCTGT 59.901 50.000 10.55 7.86 46.87 4.00
473 474 3.428999 CCACGAATCGATACAGACCTGTT 60.429 47.826 10.55 0.00 41.83 3.16
474 475 3.547868 CACGAATCGATACAGACCTGTTG 59.452 47.826 10.55 0.00 41.83 3.33
475 476 3.116300 CGAATCGATACAGACCTGTTGG 58.884 50.000 8.06 0.00 41.83 3.77
476 477 3.181490 CGAATCGATACAGACCTGTTGGA 60.181 47.826 8.06 4.36 41.83 3.53
477 478 4.499865 CGAATCGATACAGACCTGTTGGAT 60.500 45.833 8.06 6.29 41.83 3.41
478 479 3.801114 TCGATACAGACCTGTTGGATG 57.199 47.619 8.06 0.00 41.83 3.51
479 480 2.430694 TCGATACAGACCTGTTGGATGG 59.569 50.000 8.06 0.00 41.83 3.51
480 481 2.565841 GATACAGACCTGTTGGATGGC 58.434 52.381 8.06 0.00 41.83 4.40
481 482 0.618458 TACAGACCTGTTGGATGGCC 59.382 55.000 8.06 0.00 41.83 5.36
482 483 1.136329 ACAGACCTGTTGGATGGCCT 61.136 55.000 3.32 0.00 41.83 5.19
483 484 0.038744 CAGACCTGTTGGATGGCCTT 59.961 55.000 3.32 0.00 37.04 4.35
484 485 0.329596 AGACCTGTTGGATGGCCTTC 59.670 55.000 10.18 10.18 37.04 3.46
485 486 0.329596 GACCTGTTGGATGGCCTTCT 59.670 55.000 17.48 0.00 37.04 2.85
486 487 0.779997 ACCTGTTGGATGGCCTTCTT 59.220 50.000 17.48 0.00 37.04 2.52
487 488 1.147817 ACCTGTTGGATGGCCTTCTTT 59.852 47.619 17.48 0.00 37.04 2.52
488 489 2.378547 ACCTGTTGGATGGCCTTCTTTA 59.621 45.455 17.48 3.15 37.04 1.85
489 490 3.011708 ACCTGTTGGATGGCCTTCTTTAT 59.988 43.478 17.48 0.00 37.04 1.40
490 491 3.633986 CCTGTTGGATGGCCTTCTTTATC 59.366 47.826 17.48 4.35 34.57 1.75
491 492 3.631250 TGTTGGATGGCCTTCTTTATCC 58.369 45.455 17.48 13.65 39.59 2.59
492 493 2.618709 GTTGGATGGCCTTCTTTATCCG 59.381 50.000 17.48 0.00 41.54 4.18
493 494 1.142870 TGGATGGCCTTCTTTATCCGG 59.857 52.381 17.48 0.00 41.54 5.14
494 495 1.420138 GGATGGCCTTCTTTATCCGGA 59.580 52.381 17.48 6.61 30.77 5.14
495 496 2.495084 GATGGCCTTCTTTATCCGGAC 58.505 52.381 6.12 0.00 0.00 4.79
496 497 1.281419 TGGCCTTCTTTATCCGGACA 58.719 50.000 6.12 0.00 30.53 4.02
497 498 1.209504 TGGCCTTCTTTATCCGGACAG 59.790 52.381 6.12 3.09 29.44 3.51
498 499 1.300481 GCCTTCTTTATCCGGACAGC 58.700 55.000 6.12 0.00 0.00 4.40
499 500 1.406887 GCCTTCTTTATCCGGACAGCA 60.407 52.381 6.12 0.00 0.00 4.41
500 501 2.280628 CCTTCTTTATCCGGACAGCAC 58.719 52.381 6.12 0.00 0.00 4.40
501 502 1.927174 CTTCTTTATCCGGACAGCACG 59.073 52.381 6.12 0.00 0.00 5.34
510 511 2.935955 GACAGCACGGTCCAAACG 59.064 61.111 0.00 0.00 37.36 3.60
511 512 3.236618 GACAGCACGGTCCAAACGC 62.237 63.158 0.00 0.00 34.00 4.84
512 513 3.276091 CAGCACGGTCCAAACGCA 61.276 61.111 0.00 0.00 34.00 5.24
513 514 2.281484 AGCACGGTCCAAACGCAT 60.281 55.556 0.00 0.00 34.00 4.73
514 515 2.126888 GCACGGTCCAAACGCATG 60.127 61.111 0.00 0.00 34.00 4.06
515 516 2.126888 CACGGTCCAAACGCATGC 60.127 61.111 7.91 7.91 34.00 4.06
516 517 3.361977 ACGGTCCAAACGCATGCC 61.362 61.111 13.15 0.00 34.00 4.40
517 518 4.459331 CGGTCCAAACGCATGCCG 62.459 66.667 13.15 10.04 44.21 5.69
518 519 4.114997 GGTCCAAACGCATGCCGG 62.115 66.667 13.15 7.93 42.52 6.13
519 520 3.053291 GTCCAAACGCATGCCGGA 61.053 61.111 13.15 10.30 42.52 5.14
520 521 2.745884 TCCAAACGCATGCCGGAG 60.746 61.111 13.15 0.00 42.52 4.63
533 534 4.449391 CGGAGGTTTGTTGGTCGT 57.551 55.556 0.00 0.00 0.00 4.34
534 535 2.231820 CGGAGGTTTGTTGGTCGTC 58.768 57.895 0.00 0.00 0.00 4.20
535 536 1.554042 CGGAGGTTTGTTGGTCGTCG 61.554 60.000 0.00 0.00 0.00 5.12
536 537 0.531311 GGAGGTTTGTTGGTCGTCGT 60.531 55.000 0.00 0.00 0.00 4.34
537 538 1.292992 GAGGTTTGTTGGTCGTCGTT 58.707 50.000 0.00 0.00 0.00 3.85
538 539 1.004292 GAGGTTTGTTGGTCGTCGTTG 60.004 52.381 0.00 0.00 0.00 4.10
539 540 1.008329 GGTTTGTTGGTCGTCGTTGA 58.992 50.000 0.00 0.00 0.00 3.18
540 541 1.397692 GGTTTGTTGGTCGTCGTTGAA 59.602 47.619 0.00 0.00 0.00 2.69
541 542 2.538132 GGTTTGTTGGTCGTCGTTGAAG 60.538 50.000 0.00 0.00 0.00 3.02
542 543 2.296831 TTGTTGGTCGTCGTTGAAGA 57.703 45.000 0.00 0.00 0.00 2.87
543 544 2.519377 TGTTGGTCGTCGTTGAAGAT 57.481 45.000 0.00 0.00 0.00 2.40
544 545 2.131972 TGTTGGTCGTCGTTGAAGATG 58.868 47.619 0.00 0.00 0.00 2.90
545 546 1.136336 GTTGGTCGTCGTTGAAGATGC 60.136 52.381 0.00 0.00 0.00 3.91
546 547 0.669318 TGGTCGTCGTTGAAGATGCC 60.669 55.000 0.00 0.00 0.00 4.40
547 548 0.669318 GGTCGTCGTTGAAGATGCCA 60.669 55.000 0.00 0.00 0.00 4.92
548 549 1.359848 GTCGTCGTTGAAGATGCCAT 58.640 50.000 0.00 0.00 0.00 4.40
551 552 3.000322 GTCGTCGTTGAAGATGCCATAAG 60.000 47.826 0.00 0.00 0.00 1.73
566 567 2.618045 CCATAAGAAAGTTGGGGCGAGT 60.618 50.000 0.00 0.00 0.00 4.18
570 571 0.250338 GAAAGTTGGGGCGAGTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
571 572 0.182775 AAAGTTGGGGCGAGTGAGTT 59.817 50.000 0.00 0.00 0.00 3.01
581 585 2.000447 GCGAGTGAGTTTAGCGGAAAT 59.000 47.619 0.00 0.00 0.00 2.17
596 600 2.030805 CGGAAATAATTGCCTAGCCAGC 60.031 50.000 0.00 0.00 0.00 4.85
684 689 2.952978 CGGCTGTATTCTACACTCTCCT 59.047 50.000 0.00 0.00 34.46 3.69
690 695 5.692928 TGTATTCTACACTCTCCTACTCCC 58.307 45.833 0.00 0.00 32.89 4.30
691 696 3.278668 TTCTACACTCTCCTACTCCCG 57.721 52.381 0.00 0.00 0.00 5.14
733 750 0.678684 AAGTAAATCCAACCCGGCCG 60.679 55.000 21.04 21.04 33.14 6.13
734 751 2.116533 GTAAATCCAACCCGGCCGG 61.117 63.158 37.99 37.99 37.81 6.13
735 752 2.299429 TAAATCCAACCCGGCCGGA 61.299 57.895 45.44 26.15 37.50 5.14
773 790 2.394545 TAGCGATAACACATCGACCG 57.605 50.000 10.60 0.00 43.59 4.79
837 854 3.583276 TTCCCTGTACACGCGCCTG 62.583 63.158 5.73 2.58 0.00 4.85
1074 1119 2.768344 GAGGCCAGGGATCCCGAA 60.768 66.667 25.48 0.00 41.95 4.30
1369 1424 2.269241 CTCTCCCCTTTGCCGGTC 59.731 66.667 1.90 0.00 0.00 4.79
1713 1819 7.700234 TGCGTTGTAAATTATGCTAATCCTTTG 59.300 33.333 0.00 0.00 0.00 2.77
1730 1836 0.768997 TTGGACGAAAAGGGGGAGGA 60.769 55.000 0.00 0.00 0.00 3.71
1731 1837 0.549169 TGGACGAAAAGGGGGAGGAT 60.549 55.000 0.00 0.00 0.00 3.24
1732 1838 1.273953 TGGACGAAAAGGGGGAGGATA 60.274 52.381 0.00 0.00 0.00 2.59
1733 1839 1.841919 GGACGAAAAGGGGGAGGATAA 59.158 52.381 0.00 0.00 0.00 1.75
1734 1840 2.158798 GGACGAAAAGGGGGAGGATAAG 60.159 54.545 0.00 0.00 0.00 1.73
1735 1841 1.844497 ACGAAAAGGGGGAGGATAAGG 59.156 52.381 0.00 0.00 0.00 2.69
1736 1842 1.477014 CGAAAAGGGGGAGGATAAGGC 60.477 57.143 0.00 0.00 0.00 4.35
1737 1843 1.569072 GAAAAGGGGGAGGATAAGGCA 59.431 52.381 0.00 0.00 0.00 4.75
1738 1844 1.226311 AAAGGGGGAGGATAAGGCAG 58.774 55.000 0.00 0.00 0.00 4.85
1739 1845 1.356494 AAGGGGGAGGATAAGGCAGC 61.356 60.000 0.00 0.00 0.00 5.25
1740 1846 1.772156 GGGGGAGGATAAGGCAGCT 60.772 63.158 0.00 0.00 0.00 4.24
1741 1847 0.473886 GGGGGAGGATAAGGCAGCTA 60.474 60.000 0.00 0.00 0.00 3.32
1742 1848 0.980423 GGGGAGGATAAGGCAGCTAG 59.020 60.000 0.00 0.00 0.00 3.42
1743 1849 1.723288 GGGAGGATAAGGCAGCTAGT 58.277 55.000 0.00 0.00 0.00 2.57
1744 1850 1.346068 GGGAGGATAAGGCAGCTAGTG 59.654 57.143 0.00 0.00 0.00 2.74
1745 1851 2.043227 GGAGGATAAGGCAGCTAGTGT 58.957 52.381 0.00 0.00 0.00 3.55
1746 1852 2.224161 GGAGGATAAGGCAGCTAGTGTG 60.224 54.545 0.00 0.00 0.00 3.82
1779 1902 2.105128 GTGGGATCTCTGACCGCG 59.895 66.667 0.00 0.00 0.00 6.46
1867 1991 2.264794 CTGTCGTTTAGCCCCGCT 59.735 61.111 0.00 0.00 43.41 5.52
2131 2263 2.158726 TCCTTGTTACTTTGGCCGAAGT 60.159 45.455 35.26 35.26 42.27 3.01
2252 2384 6.408548 GGATCACTGATATGGAGGACAAGAAA 60.409 42.308 0.00 0.00 0.00 2.52
2267 2399 1.166531 AGAAACAGAAGGCCGTGTGC 61.167 55.000 15.79 8.03 40.16 4.57
2396 2529 1.226945 GTTGCCCAACTGCACACAC 60.227 57.895 3.99 0.00 41.88 3.82
2417 2550 2.123342 GCGATGTGTCTCAGATGCTAC 58.877 52.381 0.00 0.00 0.00 3.58
2439 2572 2.744202 CAGGACTGGTATGCACAAACTC 59.256 50.000 0.00 0.00 0.00 3.01
2559 2692 3.383185 AGATAGGTTTTCGCCTCTCTCTG 59.617 47.826 0.00 0.00 37.48 3.35
2560 2693 0.036858 AGGTTTTCGCCTCTCTCTGC 60.037 55.000 0.00 0.00 32.39 4.26
2618 2751 1.012086 CCTTCTGTCGCATGGATGTG 58.988 55.000 0.00 0.00 39.55 3.21
2619 2752 1.676916 CCTTCTGTCGCATGGATGTGT 60.677 52.381 0.00 0.00 39.25 3.72
2729 2867 3.228188 TCAGGTTGCTTCTCCACATTT 57.772 42.857 0.00 0.00 0.00 2.32
2912 3050 3.329520 AGCAACACCCTACAAAGTGGATA 59.670 43.478 0.00 0.00 38.34 2.59
2942 3080 4.522297 GCAAACTGCGGATAGTCTAAAG 57.478 45.455 0.00 0.00 31.71 1.85
2973 3111 4.660168 ACTGACGACTTAAGACTTCCCTA 58.340 43.478 10.09 0.00 0.00 3.53
3044 3182 1.615883 TGAGCACTGACTGTTCTCCTC 59.384 52.381 9.07 2.44 38.00 3.71
3164 3302 8.011673 GGTTTTGGTCGTACTTACATTTACTTC 58.988 37.037 0.00 0.00 0.00 3.01
3196 3334 3.143728 TCACTAGTTAGACGCTGTGTGA 58.856 45.455 0.00 0.00 32.66 3.58
3238 3376 7.529880 AGTTTCATGTTTCTGAAAAAGCTTG 57.470 32.000 0.00 2.29 44.38 4.01
3303 3441 1.828979 ACAACTTCCACGTGGTGTTT 58.171 45.000 32.74 20.35 33.46 2.83
3313 3451 4.039488 TCCACGTGGTGTTTCTACAATAGT 59.961 41.667 32.74 0.00 35.69 2.12
3320 3458 8.879759 CGTGGTGTTTCTACAATAGTTATGATT 58.120 33.333 0.00 0.00 35.69 2.57
3337 3761 9.875691 AGTTATGATTTATTTTCTTTCCTTGCC 57.124 29.630 0.00 0.00 0.00 4.52
3414 3838 1.935933 CTGCCATGTAGTTACGACCC 58.064 55.000 0.00 0.00 0.00 4.46
3737 4162 2.971598 GCCAAGTGCCCAGCTCCTA 61.972 63.158 0.00 0.00 0.00 2.94
3738 4163 1.685224 CCAAGTGCCCAGCTCCTAA 59.315 57.895 0.00 0.00 0.00 2.69
3739 4164 0.038166 CCAAGTGCCCAGCTCCTAAA 59.962 55.000 0.00 0.00 0.00 1.85
3740 4165 1.341383 CCAAGTGCCCAGCTCCTAAAT 60.341 52.381 0.00 0.00 0.00 1.40
3741 4166 2.092429 CCAAGTGCCCAGCTCCTAAATA 60.092 50.000 0.00 0.00 0.00 1.40
3796 4223 1.367346 TTCCATGCCTGTACCCAAGA 58.633 50.000 0.00 0.00 0.00 3.02
3837 4264 2.096417 GTCGCATTTGTAGTCGCAAACT 60.096 45.455 0.00 0.00 40.58 2.66
3974 4403 1.526575 AATGGAGGCGGTGCTGTTTG 61.527 55.000 0.00 0.00 0.00 2.93
4127 4791 6.925165 CCAAAGCTGCGAAAATTAATATGGAT 59.075 34.615 0.00 0.00 0.00 3.41
4128 4792 7.115378 CCAAAGCTGCGAAAATTAATATGGATC 59.885 37.037 0.00 0.00 0.00 3.36
4133 4797 5.411361 TGCGAAAATTAATATGGATCGGAGG 59.589 40.000 0.00 0.00 0.00 4.30
4136 4800 6.092259 CGAAAATTAATATGGATCGGAGGGAC 59.908 42.308 0.00 0.00 0.00 4.46
4141 4805 2.002505 ATGGATCGGAGGGACTACTG 57.997 55.000 0.00 0.00 41.55 2.74
4215 5207 5.213891 TCTCTTGCTGACAAAGTGATACA 57.786 39.130 0.00 0.00 34.74 2.29
4223 5215 5.333645 GCTGACAAAGTGATACAACAGTGAG 60.334 44.000 0.00 0.00 0.00 3.51
4318 5620 7.280356 AGTAATACATCCGCAGATTTTTACCT 58.720 34.615 0.00 0.00 0.00 3.08
4338 5640 4.724798 ACCTAGATACTGTTATTTGGGGCA 59.275 41.667 0.00 0.00 27.60 5.36
4379 5681 8.506437 CATTTCACAGTAAATAAGCTCAACTCA 58.494 33.333 0.00 0.00 0.00 3.41
4380 5682 8.621532 TTTCACAGTAAATAAGCTCAACTCAT 57.378 30.769 0.00 0.00 0.00 2.90
4381 5683 7.601073 TCACAGTAAATAAGCTCAACTCATG 57.399 36.000 0.00 0.00 0.00 3.07
4383 5685 8.311109 TCACAGTAAATAAGCTCAACTCATGTA 58.689 33.333 0.00 0.00 0.00 2.29
4384 5686 8.935844 CACAGTAAATAAGCTCAACTCATGTAA 58.064 33.333 0.00 0.00 0.00 2.41
4386 5688 9.760660 CAGTAAATAAGCTCAACTCATGTAAAC 57.239 33.333 0.00 0.00 0.00 2.01
4387 5689 9.726438 AGTAAATAAGCTCAACTCATGTAAACT 57.274 29.630 0.00 0.00 0.00 2.66
4448 5755 0.519077 GCGAAGTGAAGAAGCCTTGG 59.481 55.000 0.00 0.00 31.62 3.61
4565 5872 2.436115 GCCTTCCGGTAAAGCGCT 60.436 61.111 2.64 2.64 0.00 5.92
4734 6070 2.872858 GTTCAGACCAAAAGCTTCGACT 59.127 45.455 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.773117 GACGCACCCGGACGACTC 62.773 72.222 16.67 3.13 39.22 3.36
12 13 3.927163 ATTGACGCACCCGGACGAC 62.927 63.158 16.67 11.58 39.22 4.34
13 14 3.687102 ATTGACGCACCCGGACGA 61.687 61.111 16.67 0.00 39.22 4.20
14 15 3.487202 CATTGACGCACCCGGACG 61.487 66.667 0.73 6.47 39.22 4.79
15 16 3.799755 GCATTGACGCACCCGGAC 61.800 66.667 0.73 0.00 39.22 4.79
31 32 4.819761 TCCACTCCTGCATCGCGC 62.820 66.667 0.00 0.00 42.89 6.86
32 33 1.091771 AAATCCACTCCTGCATCGCG 61.092 55.000 0.00 0.00 0.00 5.87
33 34 0.659957 GAAATCCACTCCTGCATCGC 59.340 55.000 0.00 0.00 0.00 4.58
34 35 2.208431 GAGAAATCCACTCCTGCATCG 58.792 52.381 0.00 0.00 0.00 3.84
35 36 2.208431 CGAGAAATCCACTCCTGCATC 58.792 52.381 0.00 0.00 0.00 3.91
36 37 1.134280 CCGAGAAATCCACTCCTGCAT 60.134 52.381 0.00 0.00 0.00 3.96
37 38 0.250234 CCGAGAAATCCACTCCTGCA 59.750 55.000 0.00 0.00 0.00 4.41
38 39 1.092345 GCCGAGAAATCCACTCCTGC 61.092 60.000 0.00 0.00 0.00 4.85
39 40 0.462759 GGCCGAGAAATCCACTCCTG 60.463 60.000 0.00 0.00 0.00 3.86
40 41 1.908483 GGCCGAGAAATCCACTCCT 59.092 57.895 0.00 0.00 0.00 3.69
41 42 1.521681 CGGCCGAGAAATCCACTCC 60.522 63.158 24.07 0.00 0.00 3.85
42 43 1.521681 CCGGCCGAGAAATCCACTC 60.522 63.158 30.73 0.00 0.00 3.51
43 44 2.584608 CCGGCCGAGAAATCCACT 59.415 61.111 30.73 0.00 0.00 4.00
44 45 3.202706 GCCGGCCGAGAAATCCAC 61.203 66.667 30.73 0.00 0.00 4.02
45 46 4.830765 CGCCGGCCGAGAAATCCA 62.831 66.667 30.73 0.00 40.02 3.41
46 47 4.524318 TCGCCGGCCGAGAAATCC 62.524 66.667 30.73 4.38 41.89 3.01
57 58 2.203070 ATTAAGCAGGCTCGCCGG 60.203 61.111 0.00 0.00 41.95 6.13
58 59 1.521457 TCATTAAGCAGGCTCGCCG 60.521 57.895 1.69 0.00 41.95 6.46
59 60 1.766143 CGTCATTAAGCAGGCTCGCC 61.766 60.000 0.00 0.00 0.00 5.54
60 61 1.638467 CGTCATTAAGCAGGCTCGC 59.362 57.895 0.00 1.36 0.00 5.03
61 62 1.766143 GCCGTCATTAAGCAGGCTCG 61.766 60.000 0.00 0.00 44.06 5.03
62 63 2.017752 GCCGTCATTAAGCAGGCTC 58.982 57.895 0.00 0.00 44.06 4.70
63 64 4.225497 GCCGTCATTAAGCAGGCT 57.775 55.556 6.74 0.00 44.06 4.58
65 66 2.545526 CTGTATGCCGTCATTAAGCAGG 59.454 50.000 0.00 0.00 40.40 4.85
66 67 3.246226 GTCTGTATGCCGTCATTAAGCAG 59.754 47.826 0.00 0.00 40.40 4.24
67 68 3.194861 GTCTGTATGCCGTCATTAAGCA 58.805 45.455 0.00 0.00 41.50 3.91
68 69 3.194861 TGTCTGTATGCCGTCATTAAGC 58.805 45.455 0.00 0.00 34.22 3.09
69 70 5.523552 TGATTGTCTGTATGCCGTCATTAAG 59.476 40.000 0.00 0.00 34.22 1.85
70 71 5.423886 TGATTGTCTGTATGCCGTCATTAA 58.576 37.500 0.00 0.00 34.22 1.40
71 72 5.017294 TGATTGTCTGTATGCCGTCATTA 57.983 39.130 0.00 0.00 34.22 1.90
72 73 3.872696 TGATTGTCTGTATGCCGTCATT 58.127 40.909 0.00 0.00 34.22 2.57
73 74 3.541996 TGATTGTCTGTATGCCGTCAT 57.458 42.857 0.00 0.00 36.73 3.06
74 75 3.000041 GTTGATTGTCTGTATGCCGTCA 59.000 45.455 0.00 0.00 0.00 4.35
75 76 2.029244 CGTTGATTGTCTGTATGCCGTC 59.971 50.000 0.00 0.00 0.00 4.79
76 77 1.999735 CGTTGATTGTCTGTATGCCGT 59.000 47.619 0.00 0.00 0.00 5.68
77 78 2.029244 GTCGTTGATTGTCTGTATGCCG 59.971 50.000 0.00 0.00 0.00 5.69
78 79 3.000041 TGTCGTTGATTGTCTGTATGCC 59.000 45.455 0.00 0.00 0.00 4.40
79 80 4.864916 ATGTCGTTGATTGTCTGTATGC 57.135 40.909 0.00 0.00 0.00 3.14
80 81 6.407475 TCAATGTCGTTGATTGTCTGTATG 57.593 37.500 3.23 0.00 41.79 2.39
81 82 6.401047 CGTTCAATGTCGTTGATTGTCTGTAT 60.401 38.462 8.30 0.00 45.77 2.29
82 83 5.107645 CGTTCAATGTCGTTGATTGTCTGTA 60.108 40.000 8.30 0.00 45.77 2.74
83 84 4.318760 CGTTCAATGTCGTTGATTGTCTGT 60.319 41.667 8.30 0.00 45.77 3.41
84 85 4.143835 CGTTCAATGTCGTTGATTGTCTG 58.856 43.478 8.30 0.00 45.77 3.51
85 86 3.186409 CCGTTCAATGTCGTTGATTGTCT 59.814 43.478 8.30 0.00 45.77 3.41
86 87 3.479006 CCGTTCAATGTCGTTGATTGTC 58.521 45.455 8.30 0.52 45.77 3.18
87 88 2.350388 GCCGTTCAATGTCGTTGATTGT 60.350 45.455 8.30 0.00 45.77 2.71
88 89 2.241722 GCCGTTCAATGTCGTTGATTG 58.758 47.619 8.30 4.45 45.77 2.67
89 90 1.136085 CGCCGTTCAATGTCGTTGATT 60.136 47.619 8.30 0.00 45.77 2.57
90 91 0.442310 CGCCGTTCAATGTCGTTGAT 59.558 50.000 8.30 0.00 45.77 2.57
91 92 1.856688 CGCCGTTCAATGTCGTTGA 59.143 52.632 3.23 3.23 44.87 3.18
92 93 1.792057 GCGCCGTTCAATGTCGTTG 60.792 57.895 0.00 0.00 39.25 4.10
93 94 1.573829 ATGCGCCGTTCAATGTCGTT 61.574 50.000 4.18 0.00 0.00 3.85
94 95 0.738063 TATGCGCCGTTCAATGTCGT 60.738 50.000 4.18 0.00 0.00 4.34
95 96 0.043053 CTATGCGCCGTTCAATGTCG 60.043 55.000 4.18 0.00 0.00 4.35
96 97 1.006832 ACTATGCGCCGTTCAATGTC 58.993 50.000 4.18 0.00 0.00 3.06
97 98 2.159156 TCTACTATGCGCCGTTCAATGT 60.159 45.455 4.18 0.00 0.00 2.71
98 99 2.469826 TCTACTATGCGCCGTTCAATG 58.530 47.619 4.18 0.00 0.00 2.82
99 100 2.882927 TCTACTATGCGCCGTTCAAT 57.117 45.000 4.18 0.00 0.00 2.57
100 101 2.882927 ATCTACTATGCGCCGTTCAA 57.117 45.000 4.18 0.00 0.00 2.69
101 102 4.514781 AATATCTACTATGCGCCGTTCA 57.485 40.909 4.18 0.00 0.00 3.18
102 103 4.684703 ACAAATATCTACTATGCGCCGTTC 59.315 41.667 4.18 0.00 0.00 3.95
103 104 4.628074 ACAAATATCTACTATGCGCCGTT 58.372 39.130 4.18 0.00 0.00 4.44
104 105 4.235360 GACAAATATCTACTATGCGCCGT 58.765 43.478 4.18 1.58 0.00 5.68
105 106 3.612860 GGACAAATATCTACTATGCGCCG 59.387 47.826 4.18 0.00 0.00 6.46
106 107 3.933332 GGGACAAATATCTACTATGCGCC 59.067 47.826 4.18 0.00 0.00 6.53
107 108 4.566004 TGGGACAAATATCTACTATGCGC 58.434 43.478 0.00 0.00 31.92 6.09
124 125 1.987855 TGACTGGACGGGATGGGAC 60.988 63.158 0.00 0.00 0.00 4.46
125 126 1.987855 GTGACTGGACGGGATGGGA 60.988 63.158 0.00 0.00 0.00 4.37
126 127 2.290287 TGTGACTGGACGGGATGGG 61.290 63.158 0.00 0.00 0.00 4.00
127 128 1.079127 GTGTGACTGGACGGGATGG 60.079 63.158 0.00 0.00 0.00 3.51
128 129 1.446099 CGTGTGACTGGACGGGATG 60.446 63.158 0.00 0.00 31.84 3.51
129 130 1.874345 GACGTGTGACTGGACGGGAT 61.874 60.000 0.00 0.00 39.94 3.85
130 131 2.520020 ACGTGTGACTGGACGGGA 60.520 61.111 0.00 0.00 39.94 5.14
131 132 2.049433 GACGTGTGACTGGACGGG 60.049 66.667 0.00 0.00 39.94 5.28
132 133 1.081376 GAGACGTGTGACTGGACGG 60.081 63.158 0.00 0.00 39.94 4.79
133 134 1.081376 GGAGACGTGTGACTGGACG 60.081 63.158 0.00 0.00 41.41 4.79
134 135 4.968197 GGAGACGTGTGACTGGAC 57.032 61.111 0.00 0.00 0.00 4.02
146 147 1.648467 GCCTGTTCAATGCCGGAGAC 61.648 60.000 5.05 0.00 0.00 3.36
147 148 1.377202 GCCTGTTCAATGCCGGAGA 60.377 57.895 5.05 0.00 0.00 3.71
148 149 2.753966 CGCCTGTTCAATGCCGGAG 61.754 63.158 5.05 0.00 0.00 4.63
149 150 2.745884 CGCCTGTTCAATGCCGGA 60.746 61.111 5.05 0.00 0.00 5.14
150 151 4.481112 GCGCCTGTTCAATGCCGG 62.481 66.667 0.00 0.00 0.00 6.13
151 152 4.817063 CGCGCCTGTTCAATGCCG 62.817 66.667 0.00 0.00 0.00 5.69
152 153 4.481112 CCGCGCCTGTTCAATGCC 62.481 66.667 0.00 0.00 0.00 4.40
153 154 3.430862 TCCGCGCCTGTTCAATGC 61.431 61.111 0.00 0.00 0.00 3.56
154 155 2.480555 GTCCGCGCCTGTTCAATG 59.519 61.111 0.00 0.00 0.00 2.82
155 156 2.746277 GGTCCGCGCCTGTTCAAT 60.746 61.111 0.00 0.00 0.00 2.57
167 168 3.600898 GACGGGTCTTTGGGGTCCG 62.601 68.421 0.00 0.00 45.42 4.79
168 169 2.350134 GACGGGTCTTTGGGGTCC 59.650 66.667 0.00 0.00 0.00 4.46
169 170 2.047560 CGACGGGTCTTTGGGGTC 60.048 66.667 0.00 0.00 0.00 4.46
170 171 2.845795 ACGACGGGTCTTTGGGGT 60.846 61.111 0.00 0.00 0.00 4.95
171 172 2.358247 CACGACGGGTCTTTGGGG 60.358 66.667 0.00 0.00 0.00 4.96
172 173 2.358247 CCACGACGGGTCTTTGGG 60.358 66.667 0.00 0.00 30.82 4.12
173 174 1.666872 GTCCACGACGGGTCTTTGG 60.667 63.158 0.00 9.08 33.87 3.28
174 175 3.946907 GTCCACGACGGGTCTTTG 58.053 61.111 0.00 0.00 34.36 2.77
202 203 2.099062 CATTGAAGCGGCGTCAGC 59.901 61.111 17.53 0.00 44.18 4.26
203 204 1.421485 GTCATTGAAGCGGCGTCAG 59.579 57.895 17.53 8.50 0.00 3.51
204 205 2.379634 CGTCATTGAAGCGGCGTCA 61.380 57.895 14.57 14.57 0.00 4.35
205 206 2.395690 CGTCATTGAAGCGGCGTC 59.604 61.111 9.37 9.04 0.00 5.19
206 207 3.118454 CCGTCATTGAAGCGGCGT 61.118 61.111 9.37 0.00 38.99 5.68
207 208 2.802667 CTCCGTCATTGAAGCGGCG 61.803 63.158 0.51 0.51 44.58 6.46
208 209 2.464459 CCTCCGTCATTGAAGCGGC 61.464 63.158 10.09 0.00 44.58 6.53
209 210 2.464459 GCCTCCGTCATTGAAGCGG 61.464 63.158 8.93 8.93 46.12 5.52
210 211 1.699656 CTGCCTCCGTCATTGAAGCG 61.700 60.000 0.00 0.00 0.00 4.68
211 212 0.674895 ACTGCCTCCGTCATTGAAGC 60.675 55.000 0.00 0.00 0.00 3.86
212 213 1.081892 CACTGCCTCCGTCATTGAAG 58.918 55.000 0.00 0.00 0.00 3.02
213 214 0.684535 TCACTGCCTCCGTCATTGAA 59.315 50.000 0.00 0.00 0.00 2.69
214 215 0.247460 CTCACTGCCTCCGTCATTGA 59.753 55.000 0.00 0.00 0.00 2.57
215 216 0.247460 TCTCACTGCCTCCGTCATTG 59.753 55.000 0.00 0.00 0.00 2.82
216 217 0.534412 CTCTCACTGCCTCCGTCATT 59.466 55.000 0.00 0.00 0.00 2.57
217 218 1.326213 CCTCTCACTGCCTCCGTCAT 61.326 60.000 0.00 0.00 0.00 3.06
218 219 1.979155 CCTCTCACTGCCTCCGTCA 60.979 63.158 0.00 0.00 0.00 4.35
219 220 1.536943 AACCTCTCACTGCCTCCGTC 61.537 60.000 0.00 0.00 0.00 4.79
220 221 1.534235 AACCTCTCACTGCCTCCGT 60.534 57.895 0.00 0.00 0.00 4.69
221 222 1.079543 CAACCTCTCACTGCCTCCG 60.080 63.158 0.00 0.00 0.00 4.63
222 223 1.376553 GCAACCTCTCACTGCCTCC 60.377 63.158 0.00 0.00 0.00 4.30
223 224 0.035630 ATGCAACCTCTCACTGCCTC 60.036 55.000 0.00 0.00 35.13 4.70
224 225 0.035630 GATGCAACCTCTCACTGCCT 60.036 55.000 0.00 0.00 35.13 4.75
225 226 1.028868 GGATGCAACCTCTCACTGCC 61.029 60.000 5.61 0.00 35.13 4.85
226 227 1.364626 CGGATGCAACCTCTCACTGC 61.365 60.000 11.65 0.00 36.60 4.40
227 228 1.364626 GCGGATGCAACCTCTCACTG 61.365 60.000 11.65 0.00 42.15 3.66
228 229 1.078848 GCGGATGCAACCTCTCACT 60.079 57.895 11.65 0.00 42.15 3.41
229 230 2.109126 GGCGGATGCAACCTCTCAC 61.109 63.158 11.65 0.00 45.35 3.51
230 231 1.841302 AAGGCGGATGCAACCTCTCA 61.841 55.000 11.65 0.00 45.35 3.27
231 232 1.078143 AAGGCGGATGCAACCTCTC 60.078 57.895 11.65 0.58 45.35 3.20
232 233 1.377725 CAAGGCGGATGCAACCTCT 60.378 57.895 11.65 5.74 45.35 3.69
233 234 1.372087 CTCAAGGCGGATGCAACCTC 61.372 60.000 11.65 2.52 45.35 3.85
234 235 1.377725 CTCAAGGCGGATGCAACCT 60.378 57.895 11.65 3.29 45.35 3.50
235 236 3.056313 GCTCAAGGCGGATGCAACC 62.056 63.158 2.19 2.19 45.35 3.77
236 237 2.486966 GCTCAAGGCGGATGCAAC 59.513 61.111 0.00 0.00 45.35 4.17
237 238 2.751436 GGCTCAAGGCGGATGCAA 60.751 61.111 0.00 0.00 45.35 4.08
245 246 2.048603 ATTGAAGGCGGCTCAAGGC 61.049 57.895 13.70 0.17 36.30 4.35
246 247 0.962356 ACATTGAAGGCGGCTCAAGG 60.962 55.000 23.51 23.51 39.76 3.61
247 248 0.883833 AACATTGAAGGCGGCTCAAG 59.116 50.000 13.70 13.36 36.30 3.02
248 249 0.597568 CAACATTGAAGGCGGCTCAA 59.402 50.000 13.70 17.97 37.22 3.02
249 250 0.250684 TCAACATTGAAGGCGGCTCA 60.251 50.000 13.70 9.57 33.55 4.26
250 251 0.881118 TTCAACATTGAAGGCGGCTC 59.119 50.000 13.70 6.72 41.88 4.70
251 252 3.034924 TTCAACATTGAAGGCGGCT 57.965 47.368 5.25 5.25 41.88 5.52
259 260 1.154054 GCGCGCCATTCAACATTGA 60.154 52.632 23.24 0.00 34.92 2.57
260 261 1.135699 GAGCGCGCCATTCAACATTG 61.136 55.000 30.33 0.00 0.00 2.82
261 262 1.137404 GAGCGCGCCATTCAACATT 59.863 52.632 30.33 4.23 0.00 2.71
262 263 0.461870 TAGAGCGCGCCATTCAACAT 60.462 50.000 30.33 5.17 0.00 2.71
263 264 1.079474 TAGAGCGCGCCATTCAACA 60.079 52.632 30.33 5.61 0.00 3.33
264 265 1.348594 GTAGAGCGCGCCATTCAAC 59.651 57.895 30.33 13.89 0.00 3.18
265 266 0.672091 TTGTAGAGCGCGCCATTCAA 60.672 50.000 30.33 23.71 0.00 2.69
266 267 1.079474 TTGTAGAGCGCGCCATTCA 60.079 52.632 30.33 19.26 0.00 2.57
267 268 1.348594 GTTGTAGAGCGCGCCATTC 59.651 57.895 30.33 19.60 0.00 2.67
268 269 2.452813 CGTTGTAGAGCGCGCCATT 61.453 57.895 30.33 16.30 0.00 3.16
269 270 2.885644 CGTTGTAGAGCGCGCCAT 60.886 61.111 30.33 19.65 0.00 4.40
273 274 2.885644 ATGCCGTTGTAGAGCGCG 60.886 61.111 0.00 0.00 0.00 6.86
274 275 1.756375 CTCATGCCGTTGTAGAGCGC 61.756 60.000 0.00 0.00 0.00 5.92
275 276 0.458543 ACTCATGCCGTTGTAGAGCG 60.459 55.000 0.00 0.00 0.00 5.03
276 277 1.002366 CACTCATGCCGTTGTAGAGC 58.998 55.000 0.00 0.00 0.00 4.09
277 278 1.002366 GCACTCATGCCGTTGTAGAG 58.998 55.000 0.00 0.00 46.97 2.43
278 279 3.137484 GCACTCATGCCGTTGTAGA 57.863 52.632 0.00 0.00 46.97 2.59
288 289 1.154282 CAAGCTGCACGCACTCATG 60.154 57.895 1.02 0.00 42.61 3.07
289 290 1.598962 ACAAGCTGCACGCACTCAT 60.599 52.632 1.02 0.00 42.61 2.90
290 291 2.203056 ACAAGCTGCACGCACTCA 60.203 55.556 1.02 0.00 42.61 3.41
291 292 2.250485 CACAAGCTGCACGCACTC 59.750 61.111 1.02 0.00 42.61 3.51
292 293 2.514592 ACACAAGCTGCACGCACT 60.515 55.556 1.02 0.00 42.61 4.40
293 294 2.051882 GACACAAGCTGCACGCAC 60.052 61.111 1.02 0.00 42.61 5.34
294 295 3.639008 CGACACAAGCTGCACGCA 61.639 61.111 1.02 0.00 42.61 5.24
295 296 2.175184 ATTCGACACAAGCTGCACGC 62.175 55.000 1.02 0.47 39.57 5.34
296 297 0.451628 CATTCGACACAAGCTGCACG 60.452 55.000 1.02 0.00 0.00 5.34
297 298 0.110056 CCATTCGACACAAGCTGCAC 60.110 55.000 1.02 0.00 0.00 4.57
298 299 1.236616 CCCATTCGACACAAGCTGCA 61.237 55.000 1.02 0.00 0.00 4.41
299 300 0.955428 TCCCATTCGACACAAGCTGC 60.955 55.000 0.00 0.00 0.00 5.25
300 301 1.197721 GTTCCCATTCGACACAAGCTG 59.802 52.381 0.00 0.00 0.00 4.24
301 302 1.523758 GTTCCCATTCGACACAAGCT 58.476 50.000 0.00 0.00 0.00 3.74
302 303 0.165944 CGTTCCCATTCGACACAAGC 59.834 55.000 0.00 0.00 0.00 4.01
303 304 0.165944 GCGTTCCCATTCGACACAAG 59.834 55.000 0.00 0.00 0.00 3.16
304 305 1.561717 CGCGTTCCCATTCGACACAA 61.562 55.000 0.00 0.00 0.00 3.33
305 306 2.024868 CGCGTTCCCATTCGACACA 61.025 57.895 0.00 0.00 0.00 3.72
306 307 2.776072 CGCGTTCCCATTCGACAC 59.224 61.111 0.00 0.00 0.00 3.67
307 308 3.115892 GCGCGTTCCCATTCGACA 61.116 61.111 8.43 0.00 0.00 4.35
308 309 3.115892 TGCGCGTTCCCATTCGAC 61.116 61.111 8.43 0.00 0.00 4.20
309 310 3.115892 GTGCGCGTTCCCATTCGA 61.116 61.111 8.43 0.00 0.00 3.71
310 311 3.118454 AGTGCGCGTTCCCATTCG 61.118 61.111 8.43 0.00 0.00 3.34
311 312 2.480555 CAGTGCGCGTTCCCATTC 59.519 61.111 8.43 0.00 0.00 2.67
312 313 3.055719 CCAGTGCGCGTTCCCATT 61.056 61.111 8.43 0.00 0.00 3.16
323 324 2.202987 CTCATCCCTCGCCAGTGC 60.203 66.667 0.00 0.00 0.00 4.40
324 325 1.039785 TCTCTCATCCCTCGCCAGTG 61.040 60.000 0.00 0.00 0.00 3.66
325 326 0.105760 ATCTCTCATCCCTCGCCAGT 60.106 55.000 0.00 0.00 0.00 4.00
326 327 1.047002 AATCTCTCATCCCTCGCCAG 58.953 55.000 0.00 0.00 0.00 4.85
327 328 1.500474 AAATCTCTCATCCCTCGCCA 58.500 50.000 0.00 0.00 0.00 5.69
328 329 2.629336 AAAATCTCTCATCCCTCGCC 57.371 50.000 0.00 0.00 0.00 5.54
329 330 4.453819 CCATTAAAATCTCTCATCCCTCGC 59.546 45.833 0.00 0.00 0.00 5.03
330 331 4.999950 CCCATTAAAATCTCTCATCCCTCG 59.000 45.833 0.00 0.00 0.00 4.63
331 332 6.000840 GTCCCATTAAAATCTCTCATCCCTC 58.999 44.000 0.00 0.00 0.00 4.30
332 333 5.433051 TGTCCCATTAAAATCTCTCATCCCT 59.567 40.000 0.00 0.00 0.00 4.20
333 334 5.694995 TGTCCCATTAAAATCTCTCATCCC 58.305 41.667 0.00 0.00 0.00 3.85
334 335 5.767168 CCTGTCCCATTAAAATCTCTCATCC 59.233 44.000 0.00 0.00 0.00 3.51
335 336 5.767168 CCCTGTCCCATTAAAATCTCTCATC 59.233 44.000 0.00 0.00 0.00 2.92
336 337 5.699143 CCCTGTCCCATTAAAATCTCTCAT 58.301 41.667 0.00 0.00 0.00 2.90
337 338 4.628715 GCCCTGTCCCATTAAAATCTCTCA 60.629 45.833 0.00 0.00 0.00 3.27
338 339 3.885901 GCCCTGTCCCATTAAAATCTCTC 59.114 47.826 0.00 0.00 0.00 3.20
339 340 3.685550 CGCCCTGTCCCATTAAAATCTCT 60.686 47.826 0.00 0.00 0.00 3.10
340 341 2.618709 CGCCCTGTCCCATTAAAATCTC 59.381 50.000 0.00 0.00 0.00 2.75
341 342 2.654863 CGCCCTGTCCCATTAAAATCT 58.345 47.619 0.00 0.00 0.00 2.40
342 343 1.681264 CCGCCCTGTCCCATTAAAATC 59.319 52.381 0.00 0.00 0.00 2.17
343 344 1.006639 ACCGCCCTGTCCCATTAAAAT 59.993 47.619 0.00 0.00 0.00 1.82
344 345 0.406361 ACCGCCCTGTCCCATTAAAA 59.594 50.000 0.00 0.00 0.00 1.52
345 346 0.034863 GACCGCCCTGTCCCATTAAA 60.035 55.000 0.00 0.00 0.00 1.52
346 347 1.202099 TGACCGCCCTGTCCCATTAA 61.202 55.000 0.00 0.00 34.25 1.40
347 348 1.613928 TGACCGCCCTGTCCCATTA 60.614 57.895 0.00 0.00 34.25 1.90
348 349 2.933287 TGACCGCCCTGTCCCATT 60.933 61.111 0.00 0.00 34.25 3.16
349 350 3.402681 CTGACCGCCCTGTCCCAT 61.403 66.667 0.00 0.00 34.25 4.00
350 351 4.631740 TCTGACCGCCCTGTCCCA 62.632 66.667 0.00 0.00 34.25 4.37
351 352 3.316573 CTTCTGACCGCCCTGTCCC 62.317 68.421 0.00 0.00 34.25 4.46
352 353 2.232298 CTCTTCTGACCGCCCTGTCC 62.232 65.000 0.00 0.00 34.25 4.02
353 354 1.216710 CTCTTCTGACCGCCCTGTC 59.783 63.158 0.00 0.00 35.77 3.51
354 355 2.286523 CCTCTTCTGACCGCCCTGT 61.287 63.158 0.00 0.00 0.00 4.00
355 356 2.581354 CCTCTTCTGACCGCCCTG 59.419 66.667 0.00 0.00 0.00 4.45
356 357 2.685380 CCCTCTTCTGACCGCCCT 60.685 66.667 0.00 0.00 0.00 5.19
357 358 3.003763 ACCCTCTTCTGACCGCCC 61.004 66.667 0.00 0.00 0.00 6.13
358 359 2.266055 CACCCTCTTCTGACCGCC 59.734 66.667 0.00 0.00 0.00 6.13
359 360 1.079750 GACACCCTCTTCTGACCGC 60.080 63.158 0.00 0.00 0.00 5.68
360 361 1.213013 CGACACCCTCTTCTGACCG 59.787 63.158 0.00 0.00 0.00 4.79
361 362 0.898789 TCCGACACCCTCTTCTGACC 60.899 60.000 0.00 0.00 0.00 4.02
362 363 1.135333 GATCCGACACCCTCTTCTGAC 59.865 57.143 0.00 0.00 0.00 3.51
363 364 1.475403 GATCCGACACCCTCTTCTGA 58.525 55.000 0.00 0.00 0.00 3.27
364 365 0.101399 CGATCCGACACCCTCTTCTG 59.899 60.000 0.00 0.00 0.00 3.02
365 366 1.038130 CCGATCCGACACCCTCTTCT 61.038 60.000 0.00 0.00 0.00 2.85
366 367 1.321074 ACCGATCCGACACCCTCTTC 61.321 60.000 0.00 0.00 0.00 2.87
367 368 0.903454 AACCGATCCGACACCCTCTT 60.903 55.000 0.00 0.00 0.00 2.85
368 369 1.305046 AACCGATCCGACACCCTCT 60.305 57.895 0.00 0.00 0.00 3.69
369 370 1.141234 GAACCGATCCGACACCCTC 59.859 63.158 0.00 0.00 0.00 4.30
370 371 2.707849 CGAACCGATCCGACACCCT 61.708 63.158 0.00 0.00 0.00 4.34
371 372 2.202703 CGAACCGATCCGACACCC 60.203 66.667 0.00 0.00 0.00 4.61
372 373 2.202703 CCGAACCGATCCGACACC 60.203 66.667 0.00 0.00 0.00 4.16
373 374 1.515736 GTCCGAACCGATCCGACAC 60.516 63.158 0.00 0.00 36.61 3.67
374 375 1.651240 GAGTCCGAACCGATCCGACA 61.651 60.000 10.46 0.00 38.35 4.35
375 376 1.063811 GAGTCCGAACCGATCCGAC 59.936 63.158 0.00 0.00 36.78 4.79
376 377 2.117156 GGAGTCCGAACCGATCCGA 61.117 63.158 0.00 0.00 0.00 4.55
377 378 2.412112 GGAGTCCGAACCGATCCG 59.588 66.667 0.00 0.00 0.00 4.18
378 379 2.813200 GGGAGTCCGAACCGATCC 59.187 66.667 2.26 0.00 0.00 3.36
403 404 1.969589 CCGGAGAAAAACGTGGGGG 60.970 63.158 0.00 0.00 0.00 5.40
404 405 0.820482 AACCGGAGAAAAACGTGGGG 60.820 55.000 9.46 0.00 0.00 4.96
405 406 1.026584 AAACCGGAGAAAAACGTGGG 58.973 50.000 9.46 0.00 0.00 4.61
406 407 2.348779 CGTAAACCGGAGAAAAACGTGG 60.349 50.000 9.46 0.00 0.00 4.94
407 408 2.895062 CGTAAACCGGAGAAAAACGTG 58.105 47.619 9.46 0.00 0.00 4.49
419 420 2.733026 ACACGATTTCTTCCGTAAACCG 59.267 45.455 0.00 0.00 37.23 4.44
420 421 3.124128 GGACACGATTTCTTCCGTAAACC 59.876 47.826 0.00 0.00 37.23 3.27
421 422 3.181537 CGGACACGATTTCTTCCGTAAAC 60.182 47.826 0.66 0.00 44.90 2.01
422 423 2.988493 CGGACACGATTTCTTCCGTAAA 59.012 45.455 0.66 0.00 44.90 2.01
423 424 2.598589 CGGACACGATTTCTTCCGTAA 58.401 47.619 0.66 0.00 44.90 3.18
424 425 2.267188 CGGACACGATTTCTTCCGTA 57.733 50.000 0.66 0.00 44.90 4.02
425 426 3.117589 CGGACACGATTTCTTCCGT 57.882 52.632 0.66 0.00 44.90 4.69
427 428 1.356938 GTCCGGACACGATTTCTTCC 58.643 55.000 29.75 0.00 44.60 3.46
428 429 1.356938 GGTCCGGACACGATTTCTTC 58.643 55.000 34.40 10.52 44.60 2.87
429 430 0.389426 CGGTCCGGACACGATTTCTT 60.389 55.000 34.40 0.00 44.60 2.52
430 431 1.214589 CGGTCCGGACACGATTTCT 59.785 57.895 34.40 0.00 44.60 2.52
431 432 2.450345 GCGGTCCGGACACGATTTC 61.450 63.158 34.74 20.44 44.60 2.17
432 433 2.433664 GCGGTCCGGACACGATTT 60.434 61.111 34.74 0.00 44.60 2.17
433 434 3.687102 TGCGGTCCGGACACGATT 61.687 61.111 34.74 0.00 44.60 3.34
434 435 4.430765 GTGCGGTCCGGACACGAT 62.431 66.667 34.74 0.00 46.80 3.73
441 442 4.752879 ATTCGTGGTGCGGTCCGG 62.753 66.667 14.38 0.00 41.72 5.14
442 443 3.186047 GATTCGTGGTGCGGTCCG 61.186 66.667 6.99 6.99 41.72 4.79
443 444 2.901051 ATCGATTCGTGGTGCGGTCC 62.901 60.000 5.89 0.00 41.72 4.46
444 445 0.248743 TATCGATTCGTGGTGCGGTC 60.249 55.000 1.71 0.00 41.72 4.79
445 446 0.526954 GTATCGATTCGTGGTGCGGT 60.527 55.000 1.71 0.00 41.72 5.68
446 447 0.526739 TGTATCGATTCGTGGTGCGG 60.527 55.000 1.71 0.00 41.72 5.69
447 448 0.846401 CTGTATCGATTCGTGGTGCG 59.154 55.000 1.71 0.00 43.01 5.34
448 449 1.852895 GTCTGTATCGATTCGTGGTGC 59.147 52.381 1.71 0.00 0.00 5.01
449 450 2.099263 AGGTCTGTATCGATTCGTGGTG 59.901 50.000 1.71 0.00 0.00 4.17
450 451 2.099263 CAGGTCTGTATCGATTCGTGGT 59.901 50.000 1.71 0.00 0.00 4.16
451 452 2.099263 ACAGGTCTGTATCGATTCGTGG 59.901 50.000 1.71 0.00 42.90 4.94
452 453 3.422417 ACAGGTCTGTATCGATTCGTG 57.578 47.619 1.71 4.63 42.90 4.35
453 454 3.428999 CCAACAGGTCTGTATCGATTCGT 60.429 47.826 1.71 0.00 44.13 3.85
454 455 3.116300 CCAACAGGTCTGTATCGATTCG 58.884 50.000 1.71 0.00 44.13 3.34
455 456 4.386867 TCCAACAGGTCTGTATCGATTC 57.613 45.455 1.71 0.00 44.13 2.52
456 457 4.443457 CCATCCAACAGGTCTGTATCGATT 60.443 45.833 1.71 0.00 44.13 3.34
457 458 3.070159 CCATCCAACAGGTCTGTATCGAT 59.930 47.826 2.16 2.16 44.13 3.59
458 459 2.430694 CCATCCAACAGGTCTGTATCGA 59.569 50.000 3.87 0.00 44.13 3.59
459 460 2.826428 CCATCCAACAGGTCTGTATCG 58.174 52.381 3.87 0.00 44.13 2.92
460 461 2.565841 GCCATCCAACAGGTCTGTATC 58.434 52.381 3.87 0.00 44.13 2.24
461 462 1.212935 GGCCATCCAACAGGTCTGTAT 59.787 52.381 0.00 0.00 44.13 2.29
462 463 0.618458 GGCCATCCAACAGGTCTGTA 59.382 55.000 0.00 0.00 44.13 2.74
464 465 0.038744 AAGGCCATCCAACAGGTCTG 59.961 55.000 5.01 0.00 39.37 3.51
465 466 0.329596 GAAGGCCATCCAACAGGTCT 59.670 55.000 5.01 0.00 42.86 3.85
466 467 0.329596 AGAAGGCCATCCAACAGGTC 59.670 55.000 5.01 0.00 33.74 3.85
467 468 0.779997 AAGAAGGCCATCCAACAGGT 59.220 50.000 5.01 0.00 33.74 4.00
468 469 1.928868 AAAGAAGGCCATCCAACAGG 58.071 50.000 5.01 0.00 33.74 4.00
469 470 3.633986 GGATAAAGAAGGCCATCCAACAG 59.366 47.826 5.01 0.00 37.49 3.16
470 471 3.631250 GGATAAAGAAGGCCATCCAACA 58.369 45.455 5.01 0.00 37.49 3.33
471 472 2.618709 CGGATAAAGAAGGCCATCCAAC 59.381 50.000 15.72 0.42 37.41 3.77
472 473 2.422803 CCGGATAAAGAAGGCCATCCAA 60.423 50.000 15.72 0.00 37.41 3.53
473 474 1.142870 CCGGATAAAGAAGGCCATCCA 59.857 52.381 15.72 0.00 37.41 3.41
474 475 1.420138 TCCGGATAAAGAAGGCCATCC 59.580 52.381 5.01 6.48 34.75 3.51
475 476 2.158813 TGTCCGGATAAAGAAGGCCATC 60.159 50.000 7.81 1.19 0.00 3.51
476 477 1.843851 TGTCCGGATAAAGAAGGCCAT 59.156 47.619 7.81 0.00 0.00 4.40
477 478 1.209504 CTGTCCGGATAAAGAAGGCCA 59.790 52.381 7.81 0.00 0.00 5.36
478 479 1.954927 CTGTCCGGATAAAGAAGGCC 58.045 55.000 7.81 0.00 0.00 5.19
479 480 1.300481 GCTGTCCGGATAAAGAAGGC 58.700 55.000 7.81 0.00 0.00 4.35
480 481 2.280628 GTGCTGTCCGGATAAAGAAGG 58.719 52.381 7.81 0.00 0.00 3.46
481 482 1.927174 CGTGCTGTCCGGATAAAGAAG 59.073 52.381 7.81 0.00 0.00 2.85
482 483 2.004583 CGTGCTGTCCGGATAAAGAA 57.995 50.000 7.81 0.00 0.00 2.52
483 484 3.733236 CGTGCTGTCCGGATAAAGA 57.267 52.632 7.81 0.00 0.00 2.52
493 494 2.935955 CGTTTGGACCGTGCTGTC 59.064 61.111 0.00 0.00 34.42 3.51
494 495 3.276846 GCGTTTGGACCGTGCTGT 61.277 61.111 0.00 0.00 0.00 4.40
495 496 2.616330 ATGCGTTTGGACCGTGCTG 61.616 57.895 0.00 0.00 0.00 4.41
496 497 2.281484 ATGCGTTTGGACCGTGCT 60.281 55.556 0.00 0.00 0.00 4.40
497 498 2.126888 CATGCGTTTGGACCGTGC 60.127 61.111 0.00 0.00 0.00 5.34
498 499 2.126888 GCATGCGTTTGGACCGTG 60.127 61.111 0.00 0.00 0.00 4.94
499 500 3.361977 GGCATGCGTTTGGACCGT 61.362 61.111 12.44 0.00 0.00 4.83
500 501 4.459331 CGGCATGCGTTTGGACCG 62.459 66.667 12.44 2.74 0.00 4.79
501 502 4.114997 CCGGCATGCGTTTGGACC 62.115 66.667 12.44 0.00 0.00 4.46
502 503 3.039202 CTCCGGCATGCGTTTGGAC 62.039 63.158 12.44 0.00 0.00 4.02
503 504 2.745884 CTCCGGCATGCGTTTGGA 60.746 61.111 12.44 14.52 0.00 3.53
504 505 3.814268 CCTCCGGCATGCGTTTGG 61.814 66.667 12.44 10.87 0.00 3.28
505 506 2.141122 AAACCTCCGGCATGCGTTTG 62.141 55.000 16.58 5.58 0.00 2.93
506 507 1.901464 AAACCTCCGGCATGCGTTT 60.901 52.632 12.44 12.74 0.00 3.60
507 508 2.282180 AAACCTCCGGCATGCGTT 60.282 55.556 12.44 6.85 0.00 4.84
508 509 3.055719 CAAACCTCCGGCATGCGT 61.056 61.111 12.44 0.00 0.00 5.24
509 510 2.625823 AACAAACCTCCGGCATGCG 61.626 57.895 12.44 7.08 0.00 4.73
510 511 1.080569 CAACAAACCTCCGGCATGC 60.081 57.895 9.90 9.90 0.00 4.06
511 512 1.178534 ACCAACAAACCTCCGGCATG 61.179 55.000 0.00 0.00 0.00 4.06
512 513 0.893727 GACCAACAAACCTCCGGCAT 60.894 55.000 0.00 0.00 0.00 4.40
513 514 1.527380 GACCAACAAACCTCCGGCA 60.527 57.895 0.00 0.00 0.00 5.69
514 515 2.613506 CGACCAACAAACCTCCGGC 61.614 63.158 0.00 0.00 0.00 6.13
515 516 1.226030 GACGACCAACAAACCTCCGG 61.226 60.000 0.00 0.00 0.00 5.14
516 517 1.554042 CGACGACCAACAAACCTCCG 61.554 60.000 0.00 0.00 0.00 4.63
517 518 0.531311 ACGACGACCAACAAACCTCC 60.531 55.000 0.00 0.00 0.00 4.30
518 519 1.004292 CAACGACGACCAACAAACCTC 60.004 52.381 0.00 0.00 0.00 3.85
519 520 1.011333 CAACGACGACCAACAAACCT 58.989 50.000 0.00 0.00 0.00 3.50
520 521 1.008329 TCAACGACGACCAACAAACC 58.992 50.000 0.00 0.00 0.00 3.27
521 522 2.349275 TCTTCAACGACGACCAACAAAC 59.651 45.455 0.00 0.00 0.00 2.93
522 523 2.619147 TCTTCAACGACGACCAACAAA 58.381 42.857 0.00 0.00 0.00 2.83
523 524 2.296831 TCTTCAACGACGACCAACAA 57.703 45.000 0.00 0.00 0.00 2.83
524 525 2.131972 CATCTTCAACGACGACCAACA 58.868 47.619 0.00 0.00 0.00 3.33
525 526 1.136336 GCATCTTCAACGACGACCAAC 60.136 52.381 0.00 0.00 0.00 3.77
526 527 1.144969 GCATCTTCAACGACGACCAA 58.855 50.000 0.00 0.00 0.00 3.67
527 528 0.669318 GGCATCTTCAACGACGACCA 60.669 55.000 0.00 0.00 0.00 4.02
528 529 0.669318 TGGCATCTTCAACGACGACC 60.669 55.000 0.00 0.00 0.00 4.79
529 530 1.359848 ATGGCATCTTCAACGACGAC 58.640 50.000 0.00 0.00 0.00 4.34
530 531 2.951457 TATGGCATCTTCAACGACGA 57.049 45.000 1.65 0.00 0.00 4.20
531 532 3.186909 TCTTATGGCATCTTCAACGACG 58.813 45.455 1.65 0.00 0.00 5.12
532 533 5.122396 ACTTTCTTATGGCATCTTCAACGAC 59.878 40.000 1.65 0.00 0.00 4.34
533 534 5.245531 ACTTTCTTATGGCATCTTCAACGA 58.754 37.500 1.65 0.00 0.00 3.85
534 535 5.551760 ACTTTCTTATGGCATCTTCAACG 57.448 39.130 1.65 0.00 0.00 4.10
535 536 6.095377 CCAACTTTCTTATGGCATCTTCAAC 58.905 40.000 1.65 0.00 0.00 3.18
536 537 5.185635 CCCAACTTTCTTATGGCATCTTCAA 59.814 40.000 1.65 0.00 32.71 2.69
537 538 4.706476 CCCAACTTTCTTATGGCATCTTCA 59.294 41.667 1.65 0.00 32.71 3.02
538 539 4.098501 CCCCAACTTTCTTATGGCATCTTC 59.901 45.833 1.65 0.00 32.71 2.87
539 540 4.026052 CCCCAACTTTCTTATGGCATCTT 58.974 43.478 1.65 0.00 32.71 2.40
540 541 3.635591 CCCCAACTTTCTTATGGCATCT 58.364 45.455 1.65 0.00 32.71 2.90
541 542 2.101415 GCCCCAACTTTCTTATGGCATC 59.899 50.000 1.65 0.00 37.36 3.91
542 543 2.110578 GCCCCAACTTTCTTATGGCAT 58.889 47.619 4.88 4.88 37.36 4.40
543 544 1.555967 GCCCCAACTTTCTTATGGCA 58.444 50.000 0.00 0.00 37.36 4.92
544 545 0.455815 CGCCCCAACTTTCTTATGGC 59.544 55.000 0.00 0.00 32.71 4.40
545 546 2.017049 CTCGCCCCAACTTTCTTATGG 58.983 52.381 0.00 0.00 0.00 2.74
546 547 2.420022 CACTCGCCCCAACTTTCTTATG 59.580 50.000 0.00 0.00 0.00 1.90
547 548 2.304761 TCACTCGCCCCAACTTTCTTAT 59.695 45.455 0.00 0.00 0.00 1.73
548 549 1.695242 TCACTCGCCCCAACTTTCTTA 59.305 47.619 0.00 0.00 0.00 2.10
551 552 0.250338 ACTCACTCGCCCCAACTTTC 60.250 55.000 0.00 0.00 0.00 2.62
566 567 4.947388 AGGCAATTATTTCCGCTAAACTCA 59.053 37.500 0.00 0.00 0.00 3.41
570 571 4.277423 GGCTAGGCAATTATTTCCGCTAAA 59.723 41.667 12.16 0.00 0.00 1.85
571 572 3.818773 GGCTAGGCAATTATTTCCGCTAA 59.181 43.478 12.16 0.00 0.00 3.09
581 585 0.539518 TCGTGCTGGCTAGGCAATTA 59.460 50.000 20.64 6.57 41.54 1.40
596 600 2.926200 CACAAGCTCCAATACTCTCGTG 59.074 50.000 0.00 0.00 0.00 4.35
690 695 1.589993 CAGATGCTCCGTACCAGCG 60.590 63.158 6.91 0.00 40.01 5.18
691 696 1.884926 GCAGATGCTCCGTACCAGC 60.885 63.158 4.77 4.77 38.21 4.85
733 750 1.144276 GCTTAACCGCCTCTCCTCC 59.856 63.158 0.00 0.00 0.00 4.30
734 751 1.227002 CGCTTAACCGCCTCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
735 752 1.043673 ATCGCTTAACCGCCTCTCCT 61.044 55.000 0.00 0.00 0.00 3.69
773 790 3.838271 TGAGGTGCCGCTCGATCC 61.838 66.667 0.00 0.00 0.00 3.36
837 854 3.654173 GAGCCGGACCCGTGGTAAC 62.654 68.421 5.05 0.00 35.25 2.50
1369 1424 2.737180 CATGGACCGATCCCTCCG 59.263 66.667 0.00 0.00 45.59 4.63
1446 1501 1.164662 GGTCGGTCGATCGATCTCCA 61.165 60.000 25.41 7.09 41.40 3.86
1713 1819 1.503800 TATCCTCCCCCTTTTCGTCC 58.496 55.000 0.00 0.00 0.00 4.79
1730 1836 4.444022 CCTGAATCACACTAGCTGCCTTAT 60.444 45.833 0.00 0.00 0.00 1.73
1731 1837 3.118629 CCTGAATCACACTAGCTGCCTTA 60.119 47.826 0.00 0.00 0.00 2.69
1732 1838 2.355513 CCTGAATCACACTAGCTGCCTT 60.356 50.000 0.00 0.00 0.00 4.35
1733 1839 1.209019 CCTGAATCACACTAGCTGCCT 59.791 52.381 0.00 0.00 0.00 4.75
1734 1840 1.661341 CCTGAATCACACTAGCTGCC 58.339 55.000 0.00 0.00 0.00 4.85
1735 1841 1.661341 CCCTGAATCACACTAGCTGC 58.339 55.000 0.00 0.00 0.00 5.25
1736 1842 1.065926 TGCCCTGAATCACACTAGCTG 60.066 52.381 0.00 0.00 0.00 4.24
1737 1843 1.279496 TGCCCTGAATCACACTAGCT 58.721 50.000 0.00 0.00 0.00 3.32
1738 1844 2.012673 CTTGCCCTGAATCACACTAGC 58.987 52.381 0.00 0.00 0.00 3.42
1739 1845 2.636830 CCTTGCCCTGAATCACACTAG 58.363 52.381 0.00 0.00 0.00 2.57
1740 1846 1.281867 CCCTTGCCCTGAATCACACTA 59.718 52.381 0.00 0.00 0.00 2.74
1741 1847 0.038744 CCCTTGCCCTGAATCACACT 59.961 55.000 0.00 0.00 0.00 3.55
1742 1848 0.038166 TCCCTTGCCCTGAATCACAC 59.962 55.000 0.00 0.00 0.00 3.82
1743 1849 0.329261 CTCCCTTGCCCTGAATCACA 59.671 55.000 0.00 0.00 0.00 3.58
1744 1850 0.329596 ACTCCCTTGCCCTGAATCAC 59.670 55.000 0.00 0.00 0.00 3.06
1745 1851 0.329261 CACTCCCTTGCCCTGAATCA 59.671 55.000 0.00 0.00 0.00 2.57
1746 1852 0.394899 CCACTCCCTTGCCCTGAATC 60.395 60.000 0.00 0.00 0.00 2.52
1779 1902 3.549827 CCTGCACGTCAGATAGATCACTC 60.550 52.174 14.19 0.00 45.72 3.51
1867 1991 1.486310 AGGAAGAGGAATATGTGCGCA 59.514 47.619 5.66 5.66 0.00 6.09
2123 2255 1.134670 AGCATAGTCAGAACTTCGGCC 60.135 52.381 0.00 0.00 36.92 6.13
2131 2263 4.895889 AGTATACAGGCAGCATAGTCAGAA 59.104 41.667 5.50 0.00 0.00 3.02
2252 2384 1.968017 CATGCACACGGCCTTCTGT 60.968 57.895 0.00 0.00 43.89 3.41
2267 2399 3.636300 CTCTCCTTCTGTACCTCTCCATG 59.364 52.174 0.00 0.00 0.00 3.66
2396 2529 0.527169 AGCATCTGAGACACATCGCG 60.527 55.000 0.00 0.00 0.00 5.87
2439 2572 1.523258 CGCATGGGGAGAAGCTGAG 60.523 63.158 0.89 0.00 0.00 3.35
2559 2692 2.550978 ACATACATAACACGAGGCAGC 58.449 47.619 0.00 0.00 0.00 5.25
2560 2693 4.209288 GCTAACATACATAACACGAGGCAG 59.791 45.833 0.00 0.00 0.00 4.85
2618 2751 9.436957 TGTAAACTTCCATTATTCTCAAGAGAC 57.563 33.333 0.00 0.00 37.14 3.36
2619 2752 9.436957 GTGTAAACTTCCATTATTCTCAAGAGA 57.563 33.333 0.00 0.00 35.27 3.10
2665 2803 5.334879 CCACAAGTCAACACTATAAACAGCC 60.335 44.000 0.00 0.00 30.14 4.85
2912 3050 1.617850 TCCGCAGTTTGCAAATTGGAT 59.382 42.857 29.00 7.26 45.36 3.41
2942 3080 4.864806 TCTTAAGTCGTCAGTCAATGCATC 59.135 41.667 0.00 0.00 0.00 3.91
2973 3111 7.067494 AGAGCAAAGAACAACAGAATACAGTTT 59.933 33.333 0.00 0.00 0.00 2.66
3044 3182 3.224884 ACACAAACTGGACCAAAAACG 57.775 42.857 0.00 0.00 0.00 3.60
3140 3278 8.659925 TGAAGTAAATGTAAGTACGACCAAAA 57.340 30.769 0.00 0.00 0.00 2.44
3143 3281 5.865552 GCTGAAGTAAATGTAAGTACGACCA 59.134 40.000 0.00 0.00 0.00 4.02
3164 3302 2.119801 AACTAGTGAATGGCCAGCTG 57.880 50.000 13.05 6.78 0.00 4.24
3196 3334 3.944055 ACTACGTTGATCTGCAGAACT 57.056 42.857 22.50 4.69 0.00 3.01
3226 3364 3.988379 TGGCACTACAAGCTTTTTCAG 57.012 42.857 0.00 0.00 0.00 3.02
3233 3371 0.401738 ACCACATGGCACTACAAGCT 59.598 50.000 0.00 0.00 39.32 3.74
3238 3376 2.710377 TGAATCACCACATGGCACTAC 58.290 47.619 0.00 0.00 39.32 2.73
3279 3417 3.757493 ACACCACGTGGAAGTTGTTAAAA 59.243 39.130 40.21 0.00 37.94 1.52
3313 3451 7.491048 GCGGCAAGGAAAGAAAATAAATCATAA 59.509 33.333 0.00 0.00 0.00 1.90
3320 3458 2.232696 GGGCGGCAAGGAAAGAAAATAA 59.767 45.455 12.47 0.00 0.00 1.40
3331 3755 2.676121 TGTTCATGGGCGGCAAGG 60.676 61.111 12.47 0.00 0.00 3.61
3337 3761 1.600957 CAGATAAGCTGTTCATGGGCG 59.399 52.381 0.00 0.00 39.85 6.13
3738 4163 9.314133 GGGAGCTTTGGGAATAGATTAAATATT 57.686 33.333 0.00 0.00 0.00 1.28
3739 4164 8.456124 TGGGAGCTTTGGGAATAGATTAAATAT 58.544 33.333 0.00 0.00 0.00 1.28
3740 4165 7.821566 TGGGAGCTTTGGGAATAGATTAAATA 58.178 34.615 0.00 0.00 0.00 1.40
3741 4166 6.682537 TGGGAGCTTTGGGAATAGATTAAAT 58.317 36.000 0.00 0.00 0.00 1.40
3771 4198 1.271926 GGTACAGGCATGGAAACCAGT 60.272 52.381 12.98 0.00 36.75 4.00
3796 4223 0.759346 AGTTCAGGCACTTCGAAGGT 59.241 50.000 27.86 11.72 34.60 3.50
3974 4403 3.500471 GGGGGAAAACATGGGAGGATATC 60.500 52.174 0.00 0.00 0.00 1.63
4103 4532 7.149080 CGATCCATATTAATTTTCGCAGCTTTG 60.149 37.037 0.00 0.00 0.00 2.77
4108 4537 6.402550 CCTCCGATCCATATTAATTTTCGCAG 60.403 42.308 0.00 0.00 0.00 5.18
4111 4540 6.092259 GTCCCTCCGATCCATATTAATTTTCG 59.908 42.308 0.00 0.00 0.00 3.46
4114 4778 6.704056 AGTCCCTCCGATCCATATTAATTT 57.296 37.500 0.00 0.00 0.00 1.82
4127 4791 3.321111 GCATTAATCAGTAGTCCCTCCGA 59.679 47.826 0.00 0.00 0.00 4.55
4128 4792 3.322254 AGCATTAATCAGTAGTCCCTCCG 59.678 47.826 0.00 0.00 0.00 4.63
4133 4797 6.985188 TTCACAAGCATTAATCAGTAGTCC 57.015 37.500 0.00 0.00 0.00 3.85
4136 4800 9.282247 GTCAATTTCACAAGCATTAATCAGTAG 57.718 33.333 0.00 0.00 0.00 2.57
4188 5178 9.534565 GTATCACTTTGTCAGCAAGAGAATATA 57.465 33.333 0.00 0.00 35.82 0.86
4203 5193 5.036117 ACCTCACTGTTGTATCACTTTGT 57.964 39.130 0.00 0.00 0.00 2.83
4204 5194 5.277974 CCAACCTCACTGTTGTATCACTTTG 60.278 44.000 3.54 0.00 43.22 2.77
4207 5197 3.807209 GCCAACCTCACTGTTGTATCACT 60.807 47.826 3.54 0.00 43.22 3.41
4208 5198 2.484264 GCCAACCTCACTGTTGTATCAC 59.516 50.000 3.54 0.00 43.22 3.06
4209 5199 2.371841 AGCCAACCTCACTGTTGTATCA 59.628 45.455 3.54 0.00 43.22 2.15
4210 5200 3.003480 GAGCCAACCTCACTGTTGTATC 58.997 50.000 3.54 0.00 43.22 2.24
4215 5207 1.490490 TGAAGAGCCAACCTCACTGTT 59.510 47.619 0.00 0.00 43.31 3.16
4223 5215 1.032014 TTGTTGCTGAAGAGCCAACC 58.968 50.000 0.00 0.00 45.57 3.77
4263 5565 4.211164 TGATGTTGCAGTTTCAGACTAACG 59.789 41.667 0.00 0.00 36.65 3.18
4318 5620 7.069331 CCAAATTGCCCCAAATAACAGTATCTA 59.931 37.037 0.00 0.00 0.00 1.98
4338 5640 2.557924 TGAAATGTCTGCGCTCCAAATT 59.442 40.909 9.73 0.00 0.00 1.82
4448 5755 2.540265 AATCATCAGGATCGGAGCAC 57.460 50.000 0.00 0.00 34.28 4.40
4705 6012 0.110486 TTTGGTCTGAACTCCTGGCC 59.890 55.000 0.00 0.00 38.77 5.36
4734 6070 0.780637 TGATTTTACCACCCTGCCCA 59.219 50.000 0.00 0.00 0.00 5.36
5058 6395 0.038159 AAAGAGAGCTCCACGTTCGG 60.038 55.000 10.93 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.