Multiple sequence alignment - TraesCS1D01G166900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G166900 chr1D 100.000 5058 0 0 1 5058 238073417 238068360 0.000000e+00 9341.0
1 TraesCS1D01G166900 chr1D 93.617 47 2 1 4631 4677 451859049 451859094 9.090000e-08 69.4
2 TraesCS1D01G166900 chr1D 100.000 36 0 0 4638 4673 162713755 162713720 3.270000e-07 67.6
3 TraesCS1D01G166900 chr1A 92.517 2539 94 25 234 2726 301780447 301777959 0.000000e+00 3548.0
4 TraesCS1D01G166900 chr1A 96.528 1872 39 7 2759 4606 301777842 301775973 0.000000e+00 3073.0
5 TraesCS1D01G166900 chr1A 86.341 410 25 18 4673 5058 301775972 301775570 7.830000e-113 418.0
6 TraesCS1D01G166900 chr1A 97.368 38 1 0 4504 4541 140371478 140371515 1.180000e-06 65.8
7 TraesCS1D01G166900 chr1B 91.945 1974 115 17 2664 4606 336208853 336210813 0.000000e+00 2724.0
8 TraesCS1D01G166900 chr1B 88.613 1651 95 48 33 1646 336206160 336207754 0.000000e+00 1921.0
9 TraesCS1D01G166900 chr1B 82.302 582 69 20 1819 2391 336207786 336208342 1.650000e-129 473.0
10 TraesCS1D01G166900 chr1B 85.577 208 17 8 2468 2664 336208489 336208694 6.640000e-49 206.0
11 TraesCS1D01G166900 chr1B 96.000 125 5 0 4934 5058 336273491 336273615 2.390000e-48 204.0
12 TraesCS1D01G166900 chr1B 97.500 40 1 0 4638 4677 621487474 621487513 9.090000e-08 69.4
13 TraesCS1D01G166900 chr1B 97.368 38 1 0 4504 4541 634149933 634149896 1.180000e-06 65.8
14 TraesCS1D01G166900 chr3B 100.000 38 0 0 4634 4671 752295141 752295104 2.530000e-08 71.3
15 TraesCS1D01G166900 chr5B 92.157 51 1 2 4621 4671 582898519 582898566 9.090000e-08 69.4
16 TraesCS1D01G166900 chr5B 100.000 29 0 0 209 237 530188487 530188515 3.000000e-03 54.7
17 TraesCS1D01G166900 chr2D 97.500 40 1 0 4633 4672 383338105 383338144 9.090000e-08 69.4
18 TraesCS1D01G166900 chr6D 95.238 42 2 0 4633 4674 137543140 137543099 3.270000e-07 67.6
19 TraesCS1D01G166900 chr6D 100.000 29 0 0 209 237 8901084 8901112 3.000000e-03 54.7
20 TraesCS1D01G166900 chr4B 97.436 39 1 0 4633 4671 643020074 643020036 3.270000e-07 67.6
21 TraesCS1D01G166900 chr7B 86.667 60 6 2 4621 4678 92964043 92964102 1.180000e-06 65.8
22 TraesCS1D01G166900 chr7B 100.000 29 0 0 209 237 4613736 4613764 3.000000e-03 54.7
23 TraesCS1D01G166900 chr7B 100.000 29 0 0 209 237 13758293 13758321 3.000000e-03 54.7
24 TraesCS1D01G166900 chr7B 100.000 29 0 0 209 237 15803675 15803703 3.000000e-03 54.7
25 TraesCS1D01G166900 chr2B 97.368 38 1 0 4504 4541 743322094 743322057 1.180000e-06 65.8
26 TraesCS1D01G166900 chr5D 100.000 30 0 0 209 238 324588062 324588033 7.070000e-04 56.5
27 TraesCS1D01G166900 chr5D 100.000 29 0 0 209 237 361576912 361576884 3.000000e-03 54.7
28 TraesCS1D01G166900 chr6A 100.000 29 0 0 209 237 591899018 591898990 3.000000e-03 54.7
29 TraesCS1D01G166900 chr4D 100.000 29 0 0 209 237 427325401 427325373 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G166900 chr1D 238068360 238073417 5057 True 9341.000000 9341 100.000000 1 5058 1 chr1D.!!$R2 5057
1 TraesCS1D01G166900 chr1A 301775570 301780447 4877 True 2346.333333 3548 91.795333 234 5058 3 chr1A.!!$R1 4824
2 TraesCS1D01G166900 chr1B 336206160 336210813 4653 False 1331.000000 2724 87.109250 33 4606 4 chr1B.!!$F3 4573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 560 0.247460 GATTCAGGCCAAGGGTTTGC 59.753 55.0 5.01 0.00 32.79 3.68 F
1344 1383 0.319728 AGTGATTCGTGCTGCTGTCT 59.680 50.0 0.00 0.00 0.00 3.41 F
1811 1866 1.091771 GTGTGATGCCATCGGACTGG 61.092 60.0 0.00 3.09 39.45 4.00 F
1812 1867 1.264045 TGTGATGCCATCGGACTGGA 61.264 55.0 0.00 0.00 38.69 3.86 F
3769 4171 0.536460 GAGAGAGCCTAGAGGACCGG 60.536 65.0 0.00 0.00 37.39 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 1697 4.755437 AGTTAGTGGTCTTGGTTACCCTA 58.245 43.478 0.00 0.00 36.06 3.53 R
3330 3732 1.003580 TGAGAGGAATGTTGTGCTCCC 59.996 52.381 0.00 0.00 36.69 4.30 R
3769 4171 0.470341 AGGAAATTAGGGCCTCGAGC 59.530 55.000 10.74 2.33 42.60 5.03 R
3961 4363 5.338632 TCTGATTTGTAGTAGAGTTGGGGA 58.661 41.667 0.00 0.00 0.00 4.81 R
4817 5281 0.327924 CCATAGTGGTCTGTGCCCAA 59.672 55.000 0.00 0.00 32.72 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.456795 GCTATTGCTGTCCTTTATTTTCCT 57.543 37.500 0.00 0.00 36.03 3.36
28 29 6.499172 GCTATTGCTGTCCTTTATTTTCCTC 58.501 40.000 0.00 0.00 36.03 3.71
29 30 5.567138 ATTGCTGTCCTTTATTTTCCTCG 57.433 39.130 0.00 0.00 0.00 4.63
30 31 4.015872 TGCTGTCCTTTATTTTCCTCGT 57.984 40.909 0.00 0.00 0.00 4.18
31 32 3.751175 TGCTGTCCTTTATTTTCCTCGTG 59.249 43.478 0.00 0.00 0.00 4.35
70 71 3.893763 GCGCTAGCGAGAGAGGCA 61.894 66.667 39.52 0.00 42.83 4.75
78 79 0.593128 GCGAGAGAGGCAGAGAGATC 59.407 60.000 0.00 0.00 0.00 2.75
84 85 1.748493 AGAGGCAGAGAGATCGAACAC 59.252 52.381 0.00 0.00 0.00 3.32
94 95 3.630312 AGAGATCGAACACTCTCTTAGGC 59.370 47.826 9.92 0.00 44.51 3.93
95 96 2.691011 AGATCGAACACTCTCTTAGGCC 59.309 50.000 0.00 0.00 0.00 5.19
96 97 2.217510 TCGAACACTCTCTTAGGCCT 57.782 50.000 11.78 11.78 0.00 5.19
97 98 2.526432 TCGAACACTCTCTTAGGCCTT 58.474 47.619 12.58 0.00 0.00 4.35
98 99 3.693807 TCGAACACTCTCTTAGGCCTTA 58.306 45.455 12.58 0.00 0.00 2.69
102 103 3.173965 ACACTCTCTTAGGCCTTAGCAA 58.826 45.455 12.58 0.00 42.56 3.91
113 114 5.116084 AGGCCTTAGCAATGATCTGTTTA 57.884 39.130 0.00 0.00 42.56 2.01
124 125 9.323985 AGCAATGATCTGTTTAGAGAAGTAATC 57.676 33.333 0.00 0.00 36.14 1.75
132 136 9.877178 TCTGTTTAGAGAAGTAATCATTTCTCC 57.123 33.333 9.83 0.00 46.65 3.71
133 137 8.703604 TGTTTAGAGAAGTAATCATTTCTCCG 57.296 34.615 9.83 0.00 46.65 4.63
162 166 5.791336 TTCGTAAGCATATGTGGAGAGAT 57.209 39.130 4.29 0.00 37.18 2.75
191 195 5.527026 ATGAAATGAGGTTTCTCCCTTCT 57.473 39.130 2.67 0.00 45.22 2.85
198 202 7.569599 ATGAGGTTTCTCCCTTCTAACTTTA 57.430 36.000 0.00 0.00 39.23 1.85
200 204 5.791666 AGGTTTCTCCCTTCTAACTTTACG 58.208 41.667 0.00 0.00 36.75 3.18
202 206 6.042437 AGGTTTCTCCCTTCTAACTTTACGAA 59.958 38.462 0.00 0.00 36.75 3.85
203 207 6.368243 GGTTTCTCCCTTCTAACTTTACGAAG 59.632 42.308 0.00 0.00 38.87 3.79
205 209 7.765695 TTCTCCCTTCTAACTTTACGAAGTA 57.234 36.000 0.00 0.00 45.18 2.24
206 210 7.150783 TCTCCCTTCTAACTTTACGAAGTAC 57.849 40.000 0.00 0.00 45.76 2.73
207 211 6.944862 TCTCCCTTCTAACTTTACGAAGTACT 59.055 38.462 0.00 0.00 45.76 2.73
208 212 7.120432 TCTCCCTTCTAACTTTACGAAGTACTC 59.880 40.741 0.00 0.00 45.76 2.59
224 228 8.563289 CGAAGTACTCGCTCTTATATTTCTTT 57.437 34.615 0.00 0.00 41.49 2.52
225 229 9.661187 CGAAGTACTCGCTCTTATATTTCTTTA 57.339 33.333 0.00 0.00 41.49 1.85
228 232 9.733219 AGTACTCGCTCTTATATTTCTTTACAC 57.267 33.333 0.00 0.00 0.00 2.90
229 233 9.512435 GTACTCGCTCTTATATTTCTTTACACA 57.488 33.333 0.00 0.00 0.00 3.72
230 234 8.635877 ACTCGCTCTTATATTTCTTTACACAG 57.364 34.615 0.00 0.00 0.00 3.66
231 235 7.707035 ACTCGCTCTTATATTTCTTTACACAGG 59.293 37.037 0.00 0.00 0.00 4.00
232 236 6.984474 TCGCTCTTATATTTCTTTACACAGGG 59.016 38.462 0.00 0.00 0.00 4.45
264 270 2.618709 AGGAAAACAGGCAAAAGAGACG 59.381 45.455 0.00 0.00 0.00 4.18
345 352 2.514824 GTCATCAGGAAGCCGCCC 60.515 66.667 0.00 0.00 0.00 6.13
458 467 6.206243 ACACACCTCAAGAGAATCAAATCAAG 59.794 38.462 0.00 0.00 37.82 3.02
476 485 3.052036 CAAGCAGAAAACAATGAACGGG 58.948 45.455 0.00 0.00 0.00 5.28
540 549 2.045926 AGCGTGTGGGATTCAGGC 60.046 61.111 0.00 0.00 43.88 4.85
541 550 3.134127 GCGTGTGGGATTCAGGCC 61.134 66.667 0.00 0.00 39.68 5.19
550 559 0.897621 GGATTCAGGCCAAGGGTTTG 59.102 55.000 5.01 0.00 0.00 2.93
551 560 0.247460 GATTCAGGCCAAGGGTTTGC 59.753 55.000 5.01 0.00 32.79 3.68
610 623 1.171308 GGCAGCTGAGAAATGCTTCA 58.829 50.000 20.43 0.00 39.88 3.02
749 765 0.458025 GTCCACGTCAGACCGATTCC 60.458 60.000 4.24 0.00 0.00 3.01
753 769 2.413837 CACGTCAGACCGATTCCTTTT 58.586 47.619 0.00 0.00 0.00 2.27
767 783 0.881796 CCTTTTTCTCTTGGGCCGTC 59.118 55.000 0.00 0.00 0.00 4.79
801 822 3.047877 GCCCAAACAGGTCGGTCG 61.048 66.667 0.00 0.00 34.66 4.79
940 971 0.958091 CGCTGCTAGCTACCATCTCT 59.042 55.000 17.23 0.00 39.60 3.10
964 995 1.623081 TTCTCGCCGTCGATTGTTGC 61.623 55.000 0.00 0.00 44.56 4.17
1099 1131 4.988598 CGGTGCACTTCTGGGCGT 62.989 66.667 17.98 0.00 0.00 5.68
1186 1218 1.817209 CTCTTCCTCAGGGTACGCC 59.183 63.158 6.27 0.00 0.00 5.68
1325 1364 0.731514 CGCGTTTAGAGTTCTGGCGA 60.732 55.000 0.00 0.00 44.36 5.54
1344 1383 0.319728 AGTGATTCGTGCTGCTGTCT 59.680 50.000 0.00 0.00 0.00 3.41
1369 1408 2.853731 ACGTTTTCCGCATGTTTGAA 57.146 40.000 0.00 0.00 41.42 2.69
1374 1413 5.923684 ACGTTTTCCGCATGTTTGAATATTT 59.076 32.000 0.00 0.00 41.42 1.40
1375 1414 6.422400 ACGTTTTCCGCATGTTTGAATATTTT 59.578 30.769 0.00 0.00 41.42 1.82
1442 1481 3.610242 CGACAAGCACTATCTGTTGAGTC 59.390 47.826 0.00 0.00 0.00 3.36
1443 1482 4.617067 CGACAAGCACTATCTGTTGAGTCT 60.617 45.833 0.00 0.00 0.00 3.24
1444 1483 4.564041 ACAAGCACTATCTGTTGAGTCTG 58.436 43.478 0.00 0.00 0.00 3.51
1445 1484 4.039730 ACAAGCACTATCTGTTGAGTCTGT 59.960 41.667 0.00 0.00 0.00 3.41
1446 1485 5.243954 ACAAGCACTATCTGTTGAGTCTGTA 59.756 40.000 0.00 0.00 0.00 2.74
1447 1486 5.574891 AGCACTATCTGTTGAGTCTGTAG 57.425 43.478 0.00 0.00 0.00 2.74
1448 1487 5.013547 AGCACTATCTGTTGAGTCTGTAGT 58.986 41.667 0.00 0.00 0.00 2.73
1449 1488 6.181190 AGCACTATCTGTTGAGTCTGTAGTA 58.819 40.000 0.00 0.00 0.00 1.82
1642 1697 3.498774 AAGAGTGTGGAATGACAGCTT 57.501 42.857 0.00 0.00 0.00 3.74
1667 1722 4.711399 GGTAACCAAGACCACTAACTTGT 58.289 43.478 0.00 0.00 40.98 3.16
1809 1864 1.153568 CGTGTGATGCCATCGGACT 60.154 57.895 0.00 0.00 0.00 3.85
1811 1866 1.091771 GTGTGATGCCATCGGACTGG 61.092 60.000 0.00 3.09 39.45 4.00
1812 1867 1.264045 TGTGATGCCATCGGACTGGA 61.264 55.000 0.00 0.00 38.69 3.86
1819 1874 2.705658 TGCCATCGGACTGGAATTCTAT 59.294 45.455 5.23 0.00 38.69 1.98
1925 1988 6.957984 ATGATCCATTCTTTATCGATGACG 57.042 37.500 8.54 0.00 41.26 4.35
2209 2285 7.011576 TGTTAAAGTTGAATTGCACGAGTTCTA 59.988 33.333 0.00 0.00 0.00 2.10
2213 2289 4.340894 TGAATTGCACGAGTTCTATTGC 57.659 40.909 0.00 0.00 35.45 3.56
2287 2363 5.907391 GGCGTGTGTTGATATTATTGTTAGC 59.093 40.000 0.00 0.00 0.00 3.09
2423 2517 5.047802 ACCCTAAAGATTTTGCATGACTGTG 60.048 40.000 0.00 0.00 0.00 3.66
2739 3057 4.697352 TGCTTAGCTCCAGATTTTCTTCAC 59.303 41.667 5.60 0.00 0.00 3.18
2744 3062 3.505293 GCTCCAGATTTTCTTCACTGCTT 59.495 43.478 0.00 0.00 0.00 3.91
2752 3070 2.869233 TCTTCACTGCTTTGCCAAAC 57.131 45.000 0.00 0.00 0.00 2.93
2753 3071 2.098614 TCTTCACTGCTTTGCCAAACA 58.901 42.857 0.00 0.00 0.00 2.83
2755 3073 1.473258 TCACTGCTTTGCCAAACACT 58.527 45.000 0.00 0.00 0.00 3.55
2756 3074 2.649190 TCACTGCTTTGCCAAACACTA 58.351 42.857 0.00 0.00 0.00 2.74
2757 3075 2.357637 TCACTGCTTTGCCAAACACTAC 59.642 45.455 0.00 0.00 0.00 2.73
3024 3426 2.749076 CACGGCAAAATGGATCTTCTGA 59.251 45.455 0.00 0.00 0.00 3.27
3088 3490 5.559148 ACTCCCATCCTGTCATCTTATTC 57.441 43.478 0.00 0.00 0.00 1.75
3325 3727 3.131709 AGTGGTGAACTGAAGGATGTG 57.868 47.619 0.00 0.00 37.88 3.21
3330 3732 5.049405 GTGGTGAACTGAAGGATGTGTTAAG 60.049 44.000 0.00 0.00 0.00 1.85
3750 4152 5.163405 TGACTGAGAAAGGGATTATTCGGAG 60.163 44.000 0.00 0.00 0.00 4.63
3769 4171 0.536460 GAGAGAGCCTAGAGGACCGG 60.536 65.000 0.00 0.00 37.39 5.28
3961 4363 1.073199 CTCGAACTGGCCCACCTTT 59.927 57.895 0.00 0.00 36.63 3.11
3985 4387 5.422331 TCCCCAACTCTACTACAAATCAGAG 59.578 44.000 0.00 0.00 40.31 3.35
4012 4414 1.620822 GGGGCTGTGACATTGTTCTT 58.379 50.000 0.00 0.00 0.00 2.52
4074 4476 3.206150 AGTAGCGGATATTTTGGTGCTG 58.794 45.455 0.00 0.00 34.08 4.41
4258 4664 3.651423 ACCTCTTAAGTGGCCTGTTAGTT 59.349 43.478 20.93 0.00 32.19 2.24
4389 4798 1.078426 GTTCGTGTATGCCCCTGCT 60.078 57.895 0.00 0.00 38.71 4.24
4409 4835 7.882791 CCCTGCTAATATAATGTCATGGTTGTA 59.117 37.037 0.00 0.00 0.00 2.41
4553 5006 8.759641 TGTATTGTTGCACAATTACATTTTCAC 58.240 29.630 16.19 8.39 45.80 3.18
4560 5013 5.668376 GCACAATTACATTTTCACGCCAATG 60.668 40.000 0.00 0.00 36.59 2.82
4618 5071 9.916360 AAATCCGAAAATAAAATAGTACTCCCT 57.084 29.630 0.00 0.00 0.00 4.20
4619 5072 9.557061 AATCCGAAAATAAAATAGTACTCCCTC 57.443 33.333 0.00 0.00 0.00 4.30
4620 5073 8.315220 TCCGAAAATAAAATAGTACTCCCTCT 57.685 34.615 0.00 0.00 0.00 3.69
4621 5074 8.765517 TCCGAAAATAAAATAGTACTCCCTCTT 58.234 33.333 0.00 0.00 0.00 2.85
4622 5075 9.392259 CCGAAAATAAAATAGTACTCCCTCTTT 57.608 33.333 0.00 0.00 0.00 2.52
4629 5082 8.622948 AAAATAGTACTCCCTCTTTTTGACAG 57.377 34.615 0.00 0.00 0.00 3.51
4630 5083 4.625607 AGTACTCCCTCTTTTTGACAGG 57.374 45.455 0.00 0.00 0.00 4.00
4631 5084 3.974642 AGTACTCCCTCTTTTTGACAGGT 59.025 43.478 0.00 0.00 0.00 4.00
4632 5085 3.214696 ACTCCCTCTTTTTGACAGGTG 57.785 47.619 0.00 0.00 0.00 4.00
4633 5086 2.509964 ACTCCCTCTTTTTGACAGGTGT 59.490 45.455 0.00 0.00 0.00 4.16
4634 5087 3.714798 ACTCCCTCTTTTTGACAGGTGTA 59.285 43.478 0.00 0.00 0.00 2.90
4635 5088 4.351111 ACTCCCTCTTTTTGACAGGTGTAT 59.649 41.667 0.00 0.00 0.00 2.29
4636 5089 4.906618 TCCCTCTTTTTGACAGGTGTATC 58.093 43.478 0.00 0.00 0.00 2.24
4637 5090 4.349636 TCCCTCTTTTTGACAGGTGTATCA 59.650 41.667 0.00 0.00 0.00 2.15
4638 5091 5.070001 CCCTCTTTTTGACAGGTGTATCAA 58.930 41.667 0.00 0.00 33.03 2.57
4639 5092 5.534654 CCCTCTTTTTGACAGGTGTATCAAA 59.465 40.000 0.00 0.00 41.80 2.69
4644 5097 3.889196 TGACAGGTGTATCAAAAACGC 57.111 42.857 0.00 0.00 0.00 4.84
4645 5098 3.472652 TGACAGGTGTATCAAAAACGCT 58.527 40.909 0.00 0.00 0.00 5.07
4646 5099 3.496884 TGACAGGTGTATCAAAAACGCTC 59.503 43.478 0.00 0.00 0.00 5.03
4647 5100 3.740115 ACAGGTGTATCAAAAACGCTCT 58.260 40.909 0.00 0.00 0.00 4.09
4648 5101 4.134563 ACAGGTGTATCAAAAACGCTCTT 58.865 39.130 0.00 0.00 0.00 2.85
4649 5102 5.302360 ACAGGTGTATCAAAAACGCTCTTA 58.698 37.500 0.00 0.00 0.00 2.10
4650 5103 5.938125 ACAGGTGTATCAAAAACGCTCTTAT 59.062 36.000 0.00 0.00 0.00 1.73
4651 5104 7.101054 ACAGGTGTATCAAAAACGCTCTTATA 58.899 34.615 0.00 0.00 0.00 0.98
4652 5105 7.769044 ACAGGTGTATCAAAAACGCTCTTATAT 59.231 33.333 0.00 0.00 0.00 0.86
4653 5106 8.612619 CAGGTGTATCAAAAACGCTCTTATATT 58.387 33.333 0.00 0.00 0.00 1.28
4654 5107 9.826574 AGGTGTATCAAAAACGCTCTTATATTA 57.173 29.630 0.00 0.00 0.00 0.98
4661 5114 8.752254 TCAAAAACGCTCTTATATTATGAGACG 58.248 33.333 13.57 13.57 36.53 4.18
4662 5115 8.752254 CAAAAACGCTCTTATATTATGAGACGA 58.248 33.333 18.20 0.00 35.57 4.20
4663 5116 8.867112 AAAACGCTCTTATATTATGAGACGAA 57.133 30.769 18.20 0.00 35.57 3.85
4664 5117 8.508800 AAACGCTCTTATATTATGAGACGAAG 57.491 34.615 18.20 4.07 35.57 3.79
4665 5118 6.613233 ACGCTCTTATATTATGAGACGAAGG 58.387 40.000 18.20 3.81 35.57 3.46
4666 5119 6.030849 CGCTCTTATATTATGAGACGAAGGG 58.969 44.000 11.45 2.16 34.62 3.95
4667 5120 6.127980 CGCTCTTATATTATGAGACGAAGGGA 60.128 42.308 11.45 0.00 34.62 4.20
4668 5121 7.254852 GCTCTTATATTATGAGACGAAGGGAG 58.745 42.308 0.00 0.00 33.20 4.30
4669 5122 7.094118 GCTCTTATATTATGAGACGAAGGGAGT 60.094 40.741 0.00 0.00 33.20 3.85
4670 5123 9.451002 CTCTTATATTATGAGACGAAGGGAGTA 57.549 37.037 0.00 0.00 33.20 2.59
4671 5124 9.451002 TCTTATATTATGAGACGAAGGGAGTAG 57.549 37.037 0.00 0.00 0.00 2.57
4672 5125 9.233649 CTTATATTATGAGACGAAGGGAGTAGT 57.766 37.037 0.00 0.00 0.00 2.73
4674 5127 8.795842 ATATTATGAGACGAAGGGAGTAGTAG 57.204 38.462 0.00 0.00 0.00 2.57
4675 5128 4.774660 ATGAGACGAAGGGAGTAGTAGA 57.225 45.455 0.00 0.00 0.00 2.59
4676 5129 3.871485 TGAGACGAAGGGAGTAGTAGAC 58.129 50.000 0.00 0.00 0.00 2.59
4677 5130 3.262660 TGAGACGAAGGGAGTAGTAGACA 59.737 47.826 0.00 0.00 0.00 3.41
4678 5131 4.260170 GAGACGAAGGGAGTAGTAGACAA 58.740 47.826 0.00 0.00 0.00 3.18
4679 5132 4.857679 AGACGAAGGGAGTAGTAGACAAT 58.142 43.478 0.00 0.00 0.00 2.71
4680 5133 5.262804 AGACGAAGGGAGTAGTAGACAATT 58.737 41.667 0.00 0.00 0.00 2.32
4681 5134 5.715753 AGACGAAGGGAGTAGTAGACAATTT 59.284 40.000 0.00 0.00 0.00 1.82
4755 5208 4.641396 TCACCTACAAAAGACATCTGTGG 58.359 43.478 0.00 0.00 0.00 4.17
4757 5210 4.692625 CACCTACAAAAGACATCTGTGGAG 59.307 45.833 0.00 0.00 0.00 3.86
4761 5214 1.366319 AAAGACATCTGTGGAGGCCT 58.634 50.000 3.86 3.86 0.00 5.19
4768 5224 1.192146 TCTGTGGAGGCCTGTACACC 61.192 60.000 12.00 4.89 33.07 4.16
4773 5229 1.215673 TGGAGGCCTGTACACCAAAAA 59.784 47.619 12.00 0.00 0.00 1.94
4867 5331 1.994779 GTGGCGAAATTTTGCAGGATG 59.005 47.619 27.54 0.00 39.39 3.51
4962 5442 2.152016 GCTACAAACCTGTGGAGAACC 58.848 52.381 0.00 0.00 36.15 3.62
5022 5502 7.803189 CGAGTAAAATATCAAATGAATTCCGGG 59.197 37.037 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.456795 AGGAAAATAAAGGACAGCAATAGC 57.543 37.500 0.00 0.00 42.56 2.97
5 6 6.316390 ACGAGGAAAATAAAGGACAGCAATAG 59.684 38.462 0.00 0.00 0.00 1.73
6 7 6.093495 CACGAGGAAAATAAAGGACAGCAATA 59.907 38.462 0.00 0.00 0.00 1.90
7 8 5.010282 ACGAGGAAAATAAAGGACAGCAAT 58.990 37.500 0.00 0.00 0.00 3.56
8 9 4.215399 CACGAGGAAAATAAAGGACAGCAA 59.785 41.667 0.00 0.00 0.00 3.91
9 10 3.751175 CACGAGGAAAATAAAGGACAGCA 59.249 43.478 0.00 0.00 0.00 4.41
10 11 3.751698 ACACGAGGAAAATAAAGGACAGC 59.248 43.478 0.00 0.00 0.00 4.40
11 12 5.701290 AGAACACGAGGAAAATAAAGGACAG 59.299 40.000 0.00 0.00 0.00 3.51
12 13 5.617252 AGAACACGAGGAAAATAAAGGACA 58.383 37.500 0.00 0.00 0.00 4.02
13 14 7.058298 GTAGAACACGAGGAAAATAAAGGAC 57.942 40.000 0.00 0.00 0.00 3.85
29 30 6.129141 GCTCTCTGAAAAGTTACGTAGAACAC 60.129 42.308 4.15 0.00 0.00 3.32
30 31 5.919141 GCTCTCTGAAAAGTTACGTAGAACA 59.081 40.000 4.15 0.00 0.00 3.18
31 32 5.059465 CGCTCTCTGAAAAGTTACGTAGAAC 59.941 44.000 0.00 0.00 0.00 3.01
39 40 3.512680 GCTAGCGCTCTCTGAAAAGTTA 58.487 45.455 16.34 0.00 0.00 2.24
42 43 0.919981 CGCTAGCGCTCTCTGAAAAG 59.080 55.000 26.07 3.71 0.00 2.27
63 64 2.020720 TGTTCGATCTCTCTGCCTCTC 58.979 52.381 0.00 0.00 0.00 3.20
78 79 3.735514 GCTAAGGCCTAAGAGAGTGTTCG 60.736 52.174 5.16 0.00 0.00 3.95
84 85 4.679373 TCATTGCTAAGGCCTAAGAGAG 57.321 45.455 5.16 0.00 37.74 3.20
93 94 6.051717 TCTCTAAACAGATCATTGCTAAGGC 58.948 40.000 0.00 0.00 39.26 4.35
94 95 7.768120 ACTTCTCTAAACAGATCATTGCTAAGG 59.232 37.037 0.00 0.00 0.00 2.69
95 96 8.715191 ACTTCTCTAAACAGATCATTGCTAAG 57.285 34.615 0.00 0.00 0.00 2.18
98 99 9.323985 GATTACTTCTCTAAACAGATCATTGCT 57.676 33.333 0.00 0.00 0.00 3.91
113 114 5.665459 CACCGGAGAAATGATTACTTCTCT 58.335 41.667 9.46 0.00 44.62 3.10
122 123 2.420022 CGAAAAGCACCGGAGAAATGAT 59.580 45.455 9.46 0.00 0.00 2.45
124 125 1.535462 ACGAAAAGCACCGGAGAAATG 59.465 47.619 9.46 0.00 0.00 2.32
202 206 9.733219 GTGTAAAGAAATATAAGAGCGAGTACT 57.267 33.333 0.00 0.00 0.00 2.73
203 207 9.512435 TGTGTAAAGAAATATAAGAGCGAGTAC 57.488 33.333 0.00 0.00 0.00 2.73
204 208 9.731819 CTGTGTAAAGAAATATAAGAGCGAGTA 57.268 33.333 0.00 0.00 0.00 2.59
205 209 7.707035 CCTGTGTAAAGAAATATAAGAGCGAGT 59.293 37.037 0.00 0.00 0.00 4.18
206 210 7.169982 CCCTGTGTAAAGAAATATAAGAGCGAG 59.830 40.741 0.00 0.00 0.00 5.03
207 211 6.984474 CCCTGTGTAAAGAAATATAAGAGCGA 59.016 38.462 0.00 0.00 0.00 4.93
208 212 6.984474 TCCCTGTGTAAAGAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
209 213 7.988028 ACTCCCTGTGTAAAGAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
215 219 9.614792 GATGTTACTCCCTGTGTAAAGAAATAT 57.385 33.333 0.00 0.00 32.58 1.28
216 220 8.044908 GGATGTTACTCCCTGTGTAAAGAAATA 58.955 37.037 0.00 0.00 32.58 1.40
217 221 6.884836 GGATGTTACTCCCTGTGTAAAGAAAT 59.115 38.462 0.00 0.00 32.58 2.17
218 222 6.183361 TGGATGTTACTCCCTGTGTAAAGAAA 60.183 38.462 0.00 0.00 34.12 2.52
219 223 5.308497 TGGATGTTACTCCCTGTGTAAAGAA 59.692 40.000 0.00 0.00 34.12 2.52
220 224 4.841813 TGGATGTTACTCCCTGTGTAAAGA 59.158 41.667 0.00 0.00 34.12 2.52
221 225 5.160607 TGGATGTTACTCCCTGTGTAAAG 57.839 43.478 0.00 0.00 34.12 1.85
222 226 4.019681 CCTGGATGTTACTCCCTGTGTAAA 60.020 45.833 0.00 0.00 34.12 2.01
223 227 3.517901 CCTGGATGTTACTCCCTGTGTAA 59.482 47.826 0.00 0.00 34.12 2.41
224 228 3.104512 CCTGGATGTTACTCCCTGTGTA 58.895 50.000 0.00 0.00 34.12 2.90
225 229 1.909302 CCTGGATGTTACTCCCTGTGT 59.091 52.381 0.00 0.00 34.12 3.72
226 230 2.187958 TCCTGGATGTTACTCCCTGTG 58.812 52.381 0.00 0.00 34.12 3.66
227 231 2.642171 TCCTGGATGTTACTCCCTGT 57.358 50.000 0.00 0.00 34.12 4.00
228 232 4.010349 GTTTTCCTGGATGTTACTCCCTG 58.990 47.826 0.00 0.00 34.12 4.45
229 233 3.655777 TGTTTTCCTGGATGTTACTCCCT 59.344 43.478 0.00 0.00 34.12 4.20
230 234 4.010349 CTGTTTTCCTGGATGTTACTCCC 58.990 47.826 0.00 0.00 34.12 4.30
231 235 4.010349 CCTGTTTTCCTGGATGTTACTCC 58.990 47.826 0.00 0.00 34.15 3.85
232 236 3.440522 GCCTGTTTTCCTGGATGTTACTC 59.559 47.826 0.00 0.00 34.15 2.59
279 285 0.811281 GCAACTTCGCCTGCCTTTAT 59.189 50.000 0.00 0.00 32.18 1.40
280 286 0.250727 AGCAACTTCGCCTGCCTTTA 60.251 50.000 0.00 0.00 39.47 1.85
293 299 2.906389 TGAGATCCAACTACCAGCAACT 59.094 45.455 0.00 0.00 0.00 3.16
458 467 3.308530 CTTCCCGTTCATTGTTTTCTGC 58.691 45.455 0.00 0.00 0.00 4.26
540 549 1.069596 GTTGCCAGCAAACCCTTGG 59.930 57.895 6.64 0.00 37.70 3.61
541 550 0.177604 TTGTTGCCAGCAAACCCTTG 59.822 50.000 6.64 0.00 37.70 3.61
550 559 2.999331 TCCCTAATAGTTGTTGCCAGC 58.001 47.619 0.00 0.00 0.00 4.85
551 560 4.273480 CGAATCCCTAATAGTTGTTGCCAG 59.727 45.833 0.00 0.00 0.00 4.85
559 568 5.123936 GCCAGAAACGAATCCCTAATAGTT 58.876 41.667 0.00 0.00 0.00 2.24
564 577 1.406341 CGGCCAGAAACGAATCCCTAA 60.406 52.381 2.24 0.00 0.00 2.69
570 583 2.750237 GGGCGGCCAGAAACGAAT 60.750 61.111 25.33 0.00 0.00 3.34
610 623 5.564048 GGCCGACGAGTCTATATAAATCT 57.436 43.478 0.00 0.00 0.00 2.40
649 662 4.874533 CGGGTCCCCTCCCCTACC 62.875 77.778 1.00 0.00 44.32 3.18
749 765 1.537202 CTGACGGCCCAAGAGAAAAAG 59.463 52.381 0.00 0.00 0.00 2.27
753 769 2.347490 GCTGACGGCCCAAGAGAA 59.653 61.111 0.00 0.00 34.27 2.87
778 794 3.511610 ACCTGTTTGGGCCTGGCT 61.512 61.111 19.68 0.00 41.11 4.75
801 822 4.426313 CAGAAGGGGGCCGGAACC 62.426 72.222 5.05 6.30 0.00 3.62
926 957 4.069304 AGAACGCTAGAGATGGTAGCTAG 58.931 47.826 0.00 0.00 40.74 3.42
964 995 0.821711 TCGCACTTCCCCACCAAAAG 60.822 55.000 0.00 0.00 0.00 2.27
1284 1316 1.340248 ACCGCGAATCTGTACCCTATG 59.660 52.381 8.23 0.00 0.00 2.23
1285 1317 1.700955 ACCGCGAATCTGTACCCTAT 58.299 50.000 8.23 0.00 0.00 2.57
1315 1354 3.425578 CGAATCACTCGCCAGAACT 57.574 52.632 0.00 0.00 41.49 3.01
1325 1364 0.319728 AGACAGCAGCACGAATCACT 59.680 50.000 0.00 0.00 0.00 3.41
1344 1383 2.690786 ACATGCGGAAAACGTAGCTTA 58.309 42.857 0.00 0.00 46.52 3.09
1348 1387 3.529634 TCAAACATGCGGAAAACGTAG 57.470 42.857 0.00 0.00 46.52 3.51
1437 1476 7.065923 CACATGCTAACTACTACTACAGACTCA 59.934 40.741 0.00 0.00 0.00 3.41
1439 1478 7.110810 TCACATGCTAACTACTACTACAGACT 58.889 38.462 0.00 0.00 0.00 3.24
1442 1481 7.645735 CACATCACATGCTAACTACTACTACAG 59.354 40.741 0.00 0.00 0.00 2.74
1443 1482 7.122204 ACACATCACATGCTAACTACTACTACA 59.878 37.037 0.00 0.00 0.00 2.74
1444 1483 7.481642 ACACATCACATGCTAACTACTACTAC 58.518 38.462 0.00 0.00 0.00 2.73
1445 1484 7.640597 ACACATCACATGCTAACTACTACTA 57.359 36.000 0.00 0.00 0.00 1.82
1446 1485 6.531503 ACACATCACATGCTAACTACTACT 57.468 37.500 0.00 0.00 0.00 2.57
1447 1486 7.096023 GCATACACATCACATGCTAACTACTAC 60.096 40.741 0.00 0.00 41.44 2.73
1448 1487 6.923508 GCATACACATCACATGCTAACTACTA 59.076 38.462 0.00 0.00 41.44 1.82
1449 1488 5.755375 GCATACACATCACATGCTAACTACT 59.245 40.000 0.00 0.00 41.44 2.57
1642 1697 4.755437 AGTTAGTGGTCTTGGTTACCCTA 58.245 43.478 0.00 0.00 36.06 3.53
1667 1722 4.959210 TGGAAGAACAAAGGGTTTCAATCA 59.041 37.500 0.00 0.00 40.63 2.57
1762 1817 7.973048 AATTATTAGACAGTGGACCAGTAGA 57.027 36.000 0.18 0.00 0.00 2.59
1925 1988 8.196771 TCAGATATCCAAATTACAAAATGGTGC 58.803 33.333 0.00 0.00 34.50 5.01
2101 2164 7.697691 AGAGGTTTATTAGCATGAACAAATCG 58.302 34.615 0.00 0.00 31.78 3.34
2144 2207 5.454755 CGTGACCCTACCAGGATTTGATATT 60.455 44.000 0.00 0.00 37.67 1.28
2209 2285 5.638530 TTTTCCCTTTAAAACTGGGCAAT 57.361 34.783 6.20 0.00 40.69 3.56
2287 2363 6.693315 TTCTTAGAAGTTTGAAAGTGGGTG 57.307 37.500 0.00 0.00 0.00 4.61
2423 2517 6.546972 GCTAGGATGAACCAATTAACTAGC 57.453 41.667 0.00 0.00 43.35 3.42
2556 2702 3.876914 CCTAGCAAACAAAGATATCGCCA 59.123 43.478 0.00 0.00 0.00 5.69
2563 2709 7.829211 TGATTAACTAGCCTAGCAAACAAAGAT 59.171 33.333 0.00 0.00 0.00 2.40
2739 3057 6.683974 ATATAGTAGTGTTTGGCAAAGCAG 57.316 37.500 13.94 0.00 0.00 4.24
2744 3062 9.602568 TCGATAAAATATAGTAGTGTTTGGCAA 57.397 29.630 0.00 0.00 0.00 4.52
3024 3426 4.453819 GCTTCTTCAGTGTACTTTCAGCAT 59.546 41.667 0.00 0.00 0.00 3.79
3088 3490 4.400567 GGTTCTTCTGGATTTCCCTTCATG 59.599 45.833 0.00 0.00 35.38 3.07
3325 3727 3.421844 AGGAATGTTGTGCTCCCTTAAC 58.578 45.455 0.00 0.00 0.00 2.01
3330 3732 1.003580 TGAGAGGAATGTTGTGCTCCC 59.996 52.381 0.00 0.00 36.69 4.30
3750 4152 0.536460 CCGGTCCTCTAGGCTCTCTC 60.536 65.000 0.00 0.00 34.44 3.20
3769 4171 0.470341 AGGAAATTAGGGCCTCGAGC 59.530 55.000 10.74 2.33 42.60 5.03
3961 4363 5.338632 TCTGATTTGTAGTAGAGTTGGGGA 58.661 41.667 0.00 0.00 0.00 4.81
4012 4414 3.495100 GCTCTCCACTCTTTTCCAACTCA 60.495 47.826 0.00 0.00 0.00 3.41
4074 4476 5.574055 TCGAAACACCATAAGACAACGATAC 59.426 40.000 0.00 0.00 0.00 2.24
4258 4664 9.685828 GTAGCAAAAATGAAGTGGTAATACAAA 57.314 29.630 0.00 0.00 0.00 2.83
4283 4689 0.038744 CATCCAGCCTGAACCAAGGT 59.961 55.000 0.00 0.00 39.75 3.50
4389 4798 9.996554 CTGGAGTACAACCATGACATTATATTA 57.003 33.333 11.26 0.00 36.79 0.98
4560 5013 0.179129 CAGGAAAATCCATGCCGCAC 60.179 55.000 0.00 0.00 39.61 5.34
4565 5018 3.192466 GTTCATGCAGGAAAATCCATGC 58.808 45.455 16.43 11.48 39.61 4.06
4606 5059 6.272558 ACCTGTCAAAAAGAGGGAGTACTATT 59.727 38.462 0.00 0.00 42.90 1.73
4608 5061 5.011738 CACCTGTCAAAAAGAGGGAGTACTA 59.988 44.000 0.00 0.00 42.90 1.82
4610 5063 4.065789 CACCTGTCAAAAAGAGGGAGTAC 58.934 47.826 0.00 0.00 42.90 2.73
4611 5064 3.714798 ACACCTGTCAAAAAGAGGGAGTA 59.285 43.478 0.00 0.00 42.90 2.59
4613 5066 3.214696 ACACCTGTCAAAAAGAGGGAG 57.785 47.619 0.00 0.00 42.90 4.30
4614 5067 4.349636 TGATACACCTGTCAAAAAGAGGGA 59.650 41.667 0.00 0.00 42.90 4.20
4616 5069 6.633500 TTTGATACACCTGTCAAAAAGAGG 57.367 37.500 0.00 0.00 44.21 3.69
4621 5074 5.038033 GCGTTTTTGATACACCTGTCAAAA 58.962 37.500 8.66 8.66 46.64 2.44
4622 5075 4.336993 AGCGTTTTTGATACACCTGTCAAA 59.663 37.500 0.00 0.00 41.21 2.69
4623 5076 3.880490 AGCGTTTTTGATACACCTGTCAA 59.120 39.130 0.00 0.00 32.86 3.18
4624 5077 3.472652 AGCGTTTTTGATACACCTGTCA 58.527 40.909 0.00 0.00 0.00 3.58
4625 5078 3.746492 AGAGCGTTTTTGATACACCTGTC 59.254 43.478 0.00 0.00 0.00 3.51
4626 5079 3.740115 AGAGCGTTTTTGATACACCTGT 58.260 40.909 0.00 0.00 0.00 4.00
4627 5080 4.749245 AAGAGCGTTTTTGATACACCTG 57.251 40.909 0.00 0.00 0.00 4.00
4628 5081 8.732746 AATATAAGAGCGTTTTTGATACACCT 57.267 30.769 0.00 0.00 0.00 4.00
4635 5088 8.752254 CGTCTCATAATATAAGAGCGTTTTTGA 58.248 33.333 0.00 0.00 0.00 2.69
4636 5089 8.752254 TCGTCTCATAATATAAGAGCGTTTTTG 58.248 33.333 0.00 0.00 33.70 2.44
4637 5090 8.867112 TCGTCTCATAATATAAGAGCGTTTTT 57.133 30.769 0.00 0.00 33.70 1.94
4638 5091 8.867112 TTCGTCTCATAATATAAGAGCGTTTT 57.133 30.769 0.00 0.00 33.70 2.43
4639 5092 7.595502 CCTTCGTCTCATAATATAAGAGCGTTT 59.404 37.037 0.00 0.00 33.70 3.60
4640 5093 7.085116 CCTTCGTCTCATAATATAAGAGCGTT 58.915 38.462 0.00 0.00 33.70 4.84
4641 5094 6.349445 CCCTTCGTCTCATAATATAAGAGCGT 60.349 42.308 0.00 0.00 33.70 5.07
4642 5095 6.030849 CCCTTCGTCTCATAATATAAGAGCG 58.969 44.000 0.00 0.00 33.46 5.03
4643 5096 7.094118 ACTCCCTTCGTCTCATAATATAAGAGC 60.094 40.741 0.00 0.00 0.00 4.09
4644 5097 8.343168 ACTCCCTTCGTCTCATAATATAAGAG 57.657 38.462 0.00 0.00 0.00 2.85
4645 5098 9.451002 CTACTCCCTTCGTCTCATAATATAAGA 57.549 37.037 0.00 0.00 0.00 2.10
4646 5099 9.233649 ACTACTCCCTTCGTCTCATAATATAAG 57.766 37.037 0.00 0.00 0.00 1.73
4648 5101 9.887629 CTACTACTCCCTTCGTCTCATAATATA 57.112 37.037 0.00 0.00 0.00 0.86
4649 5102 8.604184 TCTACTACTCCCTTCGTCTCATAATAT 58.396 37.037 0.00 0.00 0.00 1.28
4650 5103 7.877097 GTCTACTACTCCCTTCGTCTCATAATA 59.123 40.741 0.00 0.00 0.00 0.98
4651 5104 6.711645 GTCTACTACTCCCTTCGTCTCATAAT 59.288 42.308 0.00 0.00 0.00 1.28
4652 5105 6.054295 GTCTACTACTCCCTTCGTCTCATAA 58.946 44.000 0.00 0.00 0.00 1.90
4653 5106 5.129980 TGTCTACTACTCCCTTCGTCTCATA 59.870 44.000 0.00 0.00 0.00 2.15
4654 5107 4.080469 TGTCTACTACTCCCTTCGTCTCAT 60.080 45.833 0.00 0.00 0.00 2.90
4655 5108 3.262660 TGTCTACTACTCCCTTCGTCTCA 59.737 47.826 0.00 0.00 0.00 3.27
4656 5109 3.871485 TGTCTACTACTCCCTTCGTCTC 58.129 50.000 0.00 0.00 0.00 3.36
4657 5110 3.996921 TGTCTACTACTCCCTTCGTCT 57.003 47.619 0.00 0.00 0.00 4.18
4658 5111 5.579564 AATTGTCTACTACTCCCTTCGTC 57.420 43.478 0.00 0.00 0.00 4.20
4659 5112 5.997384 AAATTGTCTACTACTCCCTTCGT 57.003 39.130 0.00 0.00 0.00 3.85
4720 5173 9.362151 TCTTTTGTAGGTGAAATTTTACAGGAT 57.638 29.630 14.30 1.21 0.00 3.24
4721 5174 8.626526 GTCTTTTGTAGGTGAAATTTTACAGGA 58.373 33.333 14.30 6.00 0.00 3.86
4722 5175 8.410141 TGTCTTTTGTAGGTGAAATTTTACAGG 58.590 33.333 14.30 4.23 0.00 4.00
4737 5190 3.686726 GCCTCCACAGATGTCTTTTGTAG 59.313 47.826 0.00 0.00 0.00 2.74
4816 5280 1.271871 CCATAGTGGTCTGTGCCCAAA 60.272 52.381 0.00 0.00 32.72 3.28
4817 5281 0.327924 CCATAGTGGTCTGTGCCCAA 59.672 55.000 0.00 0.00 32.72 4.12
4818 5282 0.546507 TCCATAGTGGTCTGTGCCCA 60.547 55.000 0.00 0.00 39.03 5.36
4819 5283 0.839946 ATCCATAGTGGTCTGTGCCC 59.160 55.000 0.00 0.00 39.03 5.36
4820 5284 2.224305 GGTATCCATAGTGGTCTGTGCC 60.224 54.545 0.00 0.00 39.03 5.01
4821 5285 2.700897 AGGTATCCATAGTGGTCTGTGC 59.299 50.000 0.00 0.00 39.03 4.57
4822 5286 5.359194 AAAGGTATCCATAGTGGTCTGTG 57.641 43.478 0.00 0.00 39.03 3.66
4823 5287 6.180472 CAAAAAGGTATCCATAGTGGTCTGT 58.820 40.000 0.00 0.00 39.03 3.41
4962 5442 2.270047 CCATAAACAAATTGCTGCCCG 58.730 47.619 0.00 0.00 0.00 6.13
5013 5493 9.557061 AATTTATCTAGTTAGTTCCCGGAATTC 57.443 33.333 0.73 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.