Multiple sequence alignment - TraesCS1D01G166400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G166400 chr1D 100.000 5215 0 0 1 5215 237359316 237364530 0.000000e+00 9631.0
1 TraesCS1D01G166400 chr1D 90.939 309 25 3 1 308 413585071 413585377 3.760000e-111 412.0
2 TraesCS1D01G166400 chr1D 86.093 151 15 3 779 924 433461776 433461925 1.940000e-34 158.0
3 TraesCS1D01G166400 chr1B 96.971 2212 53 3 961 3158 338015627 338013416 0.000000e+00 3701.0
4 TraesCS1D01G166400 chr1B 98.161 1033 17 2 3144 4176 338011310 338010280 0.000000e+00 1801.0
5 TraesCS1D01G166400 chr1B 96.150 1065 32 7 4159 5215 338008460 338007397 0.000000e+00 1731.0
6 TraesCS1D01G166400 chr1B 92.063 441 33 2 1 441 338017342 338016904 2.060000e-173 619.0
7 TraesCS1D01G166400 chr1B 86.093 151 15 4 779 924 207881419 207881270 1.940000e-34 158.0
8 TraesCS1D01G166400 chr1A 91.560 1801 94 22 3434 5215 301133298 301135059 0.000000e+00 2431.0
9 TraesCS1D01G166400 chr1A 91.241 1644 94 25 1809 3435 301129481 301131091 0.000000e+00 2193.0
10 TraesCS1D01G166400 chr1A 93.750 672 34 6 924 1593 301128249 301128914 0.000000e+00 1002.0
11 TraesCS1D01G166400 chr1A 85.256 156 17 2 779 929 309712144 309712298 6.990000e-34 156.0
12 TraesCS1D01G166400 chr1A 89.189 111 11 1 614 724 29885481 29885372 2.530000e-28 137.0
13 TraesCS1D01G166400 chr1A 91.379 58 3 1 724 781 394445426 394445371 1.560000e-10 78.7
14 TraesCS1D01G166400 chr1A 91.379 58 3 1 724 781 394533820 394533765 1.560000e-10 78.7
15 TraesCS1D01G166400 chr2B 92.233 309 22 2 1 308 786863630 786863937 2.230000e-118 436.0
16 TraesCS1D01G166400 chr2B 83.333 180 21 6 779 950 717045508 717045686 1.940000e-34 158.0
17 TraesCS1D01G166400 chr7D 91.909 309 23 2 1 308 614650873 614650566 1.040000e-116 431.0
18 TraesCS1D01G166400 chr7D 92.000 175 14 0 439 613 391965320 391965494 4.030000e-61 246.0
19 TraesCS1D01G166400 chr7D 85.625 160 16 4 779 933 511926977 511926820 1.500000e-35 161.0
20 TraesCS1D01G166400 chr7D 79.787 188 15 7 614 780 110583672 110583487 1.190000e-21 115.0
21 TraesCS1D01G166400 chr4D 91.456 316 24 3 1 315 452559671 452559984 1.040000e-116 431.0
22 TraesCS1D01G166400 chr4D 95.918 49 2 0 726 774 10486977 10486929 4.330000e-11 80.5
23 TraesCS1D01G166400 chr7A 92.027 301 21 2 8 308 421728403 421728106 2.250000e-113 420.0
24 TraesCS1D01G166400 chr7A 92.529 174 13 0 440 613 452751140 452751313 3.120000e-62 250.0
25 TraesCS1D01G166400 chr7A 92.000 175 14 0 439 613 486173323 486173149 4.030000e-61 246.0
26 TraesCS1D01G166400 chr7A 88.079 151 12 4 779 924 546431864 546432013 1.930000e-39 174.0
27 TraesCS1D01G166400 chr6B 90.968 310 25 3 1 308 707216967 707216659 1.040000e-111 414.0
28 TraesCS1D01G166400 chr6B 87.387 111 14 0 614 724 472135939 472135829 1.520000e-25 128.0
29 TraesCS1D01G166400 chr7B 90.850 306 25 3 1 305 6086325 6086628 1.750000e-109 407.0
30 TraesCS1D01G166400 chr7B 92.529 174 13 0 440 613 710460333 710460160 3.120000e-62 250.0
31 TraesCS1D01G166400 chr3A 90.615 309 25 3 1 308 545048611 545048306 1.750000e-109 407.0
32 TraesCS1D01G166400 chr3A 92.486 173 13 0 441 613 36136645 36136817 1.120000e-61 248.0
33 TraesCS1D01G166400 chr3A 91.061 179 16 0 435 613 518488431 518488609 5.220000e-60 243.0
34 TraesCS1D01G166400 chr3A 91.071 112 9 1 614 724 575006770 575006659 3.250000e-32 150.0
35 TraesCS1D01G166400 chr3A 97.561 41 1 0 684 724 8229092 8229132 2.610000e-08 71.3
36 TraesCS1D01G166400 chr6A 92.000 175 14 0 438 612 558991574 558991748 4.030000e-61 246.0
37 TraesCS1D01G166400 chr6A 92.000 175 14 0 438 612 558992252 558992426 4.030000e-61 246.0
38 TraesCS1D01G166400 chr6A 83.168 101 16 1 616 715 477135907 477135807 2.000000e-14 91.6
39 TraesCS1D01G166400 chr2D 91.573 178 14 1 437 613 572036408 572036231 1.450000e-60 244.0
40 TraesCS1D01G166400 chr2D 92.982 57 2 2 723 779 58734607 58734661 1.200000e-11 82.4
41 TraesCS1D01G166400 chr6D 88.079 151 12 2 779 924 98871618 98871469 1.930000e-39 174.0
42 TraesCS1D01G166400 chr6D 96.000 50 2 0 724 773 9340722 9340771 1.200000e-11 82.4
43 TraesCS1D01G166400 chr4B 93.636 110 7 0 614 723 657807182 657807291 1.160000e-36 165.0
44 TraesCS1D01G166400 chr4B 93.333 45 3 0 1770 1814 144758329 144758285 3.370000e-07 67.6
45 TraesCS1D01G166400 chr5D 86.093 151 15 4 779 924 136352089 136352238 1.940000e-34 158.0
46 TraesCS1D01G166400 chr5D 80.000 190 16 6 614 783 189162436 189162249 2.550000e-23 121.0
47 TraesCS1D01G166400 chr3D 86.093 151 15 3 779 924 123313147 123313296 1.940000e-34 158.0
48 TraesCS1D01G166400 chr3D 85.714 119 15 2 614 732 316418399 316418283 1.970000e-24 124.0
49 TraesCS1D01G166400 chr3D 80.319 188 13 7 614 781 464249714 464249531 2.550000e-23 121.0
50 TraesCS1D01G166400 chr5B 88.793 116 10 3 614 728 545120373 545120486 7.040000e-29 139.0
51 TraesCS1D01G166400 chr4A 85.345 116 15 2 614 728 732863152 732863038 9.170000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G166400 chr1D 237359316 237364530 5214 False 9631.000000 9631 100.000000 1 5215 1 chr1D.!!$F1 5214
1 TraesCS1D01G166400 chr1B 338007397 338017342 9945 True 1963.000000 3701 95.836250 1 5215 4 chr1B.!!$R2 5214
2 TraesCS1D01G166400 chr1A 301128249 301135059 6810 False 1875.333333 2431 92.183667 924 5215 3 chr1A.!!$F2 4291
3 TraesCS1D01G166400 chr6A 558991574 558992426 852 False 246.000000 246 92.000000 438 612 2 chr6A.!!$F1 174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 628 0.100146 GTGTATCGACTGTCGTCCCC 59.900 60.000 27.16 15.06 41.35 4.81 F
630 631 0.177836 TATCGACTGTCGTCCCCGTA 59.822 55.000 27.16 8.87 41.35 4.02 F
726 727 0.179018 GCCCCAGCCGTTATCTGATT 60.179 55.000 0.00 0.00 33.54 2.57 F
1210 2494 0.321122 CAGCGAGCTCAAGGGTTCTT 60.321 55.000 15.40 0.00 0.00 2.52 F
1887 3585 2.092968 GCATGGGACTAGATGGTGTGAA 60.093 50.000 0.00 0.00 0.00 3.18 F
1899 3597 4.703575 AGATGGTGTGAAGTGGAATTCATG 59.296 41.667 7.93 0.00 41.05 3.07 F
2330 4038 4.811555 TTTGTGTGTGTATGTTGAGAGC 57.188 40.909 0.00 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2330 4038 0.591170 ATTTGGGCACACTTCGAACG 59.409 50.000 0.00 0.0 0.00 3.95 R
2580 4288 6.262944 GTGCAACCATACTTTATCATCATCCA 59.737 38.462 0.00 0.0 0.00 3.41 R
2673 4381 4.898265 TGAAAAACAAATGGGAGATGGACA 59.102 37.500 0.00 0.0 0.00 4.02 R
2674 4382 5.243730 TCTGAAAAACAAATGGGAGATGGAC 59.756 40.000 0.00 0.0 0.00 4.02 R
3380 7214 2.900546 AGTAGCACTTACTTGCCTCAGT 59.099 45.455 0.00 0.0 44.14 3.41 R
3803 9845 3.192844 CAGTCATTTTCAGGAGCTGCATT 59.807 43.478 8.35 0.0 0.00 3.56 R
4275 12162 1.186267 ACAGAACCCTCCACGAGTCC 61.186 60.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.237846 GTGAAAAGTACAGAGATTTGGAAAAAG 57.762 33.333 0.00 0.00 0.00 2.27
87 88 8.966868 TGAAAAGTACAGAGATTTGGAAAAAGT 58.033 29.630 0.00 0.00 0.00 2.66
163 164 4.074647 GGTCAAAACCGGGGTGAG 57.925 61.111 6.32 0.00 35.36 3.51
167 168 1.830408 CAAAACCGGGGTGAGCCAA 60.830 57.895 6.32 0.00 36.17 4.52
186 187 3.194062 CAACACCAAAACCGCTCAAAAT 58.806 40.909 0.00 0.00 0.00 1.82
188 189 2.050691 CACCAAAACCGCTCAAAATCG 58.949 47.619 0.00 0.00 0.00 3.34
209 210 3.369892 CGAGACCAGGGATGAATCTTGTT 60.370 47.826 0.00 0.00 0.00 2.83
216 217 4.010349 AGGGATGAATCTTGTTCGGTTTC 58.990 43.478 0.00 0.00 0.00 2.78
231 232 1.607148 GGTTTCAGTAGTTGTGGGTGC 59.393 52.381 0.00 0.00 0.00 5.01
241 242 1.380403 TTGTGGGTGCAAGTTGTCCG 61.380 55.000 4.48 0.00 0.00 4.79
242 243 2.203280 TGGGTGCAAGTTGTCCGG 60.203 61.111 4.48 0.00 0.00 5.14
247 248 0.316689 GTGCAAGTTGTCCGGTTTCG 60.317 55.000 0.00 0.00 0.00 3.46
256 257 1.616865 TGTCCGGTTTCGAAGATGAGT 59.383 47.619 0.00 0.00 39.00 3.41
265 266 6.543736 GGTTTCGAAGATGAGTAACCAAATC 58.456 40.000 6.53 0.00 37.61 2.17
268 269 8.932791 GTTTCGAAGATGAGTAACCAAATCTAA 58.067 33.333 0.00 0.00 35.04 2.10
286 287 7.562454 AATCTAAACTCCGTCAAAAGTTGAA 57.438 32.000 0.00 0.00 42.15 2.69
300 301 8.553696 GTCAAAAGTTGAAGGACGAAAAGTATA 58.446 33.333 0.00 0.00 42.15 1.47
334 335 7.551617 TCCTATTCTACGGGAATTTCAAGAAAC 59.448 37.037 10.31 0.00 41.42 2.78
335 336 5.600908 TTCTACGGGAATTTCAAGAAACG 57.399 39.130 0.00 0.18 32.51 3.60
346 347 8.654215 GGAATTTCAAGAAACGTAGGTTAGTAG 58.346 37.037 0.43 0.00 34.62 2.57
379 380 5.007136 TCAAAACGGCACCAAATGAAAATTC 59.993 36.000 0.00 0.00 0.00 2.17
382 383 3.573967 ACGGCACCAAATGAAAATTCTCT 59.426 39.130 0.00 0.00 0.00 3.10
412 413 7.607615 AATCCCATCATTCAAAATTCCTAGG 57.392 36.000 0.82 0.82 0.00 3.02
425 426 9.898152 TCAAAATTCCTAGGTTTTTGATTTGTT 57.102 25.926 30.39 9.62 41.75 2.83
427 428 8.587952 AAATTCCTAGGTTTTTGATTTGTTCG 57.412 30.769 9.08 0.00 0.00 3.95
428 429 6.945938 TTCCTAGGTTTTTGATTTGTTCGA 57.054 33.333 9.08 0.00 0.00 3.71
429 430 6.945938 TCCTAGGTTTTTGATTTGTTCGAA 57.054 33.333 9.08 0.00 0.00 3.71
430 431 7.336161 TCCTAGGTTTTTGATTTGTTCGAAA 57.664 32.000 9.08 0.00 36.18 3.46
431 432 7.197703 TCCTAGGTTTTTGATTTGTTCGAAAC 58.802 34.615 9.08 0.00 37.43 2.78
432 433 6.975772 CCTAGGTTTTTGATTTGTTCGAAACA 59.024 34.615 0.00 0.00 37.43 2.83
433 434 6.885735 AGGTTTTTGATTTGTTCGAAACAG 57.114 33.333 0.00 0.00 43.27 3.16
434 435 6.626302 AGGTTTTTGATTTGTTCGAAACAGA 58.374 32.000 0.00 0.00 43.27 3.41
435 436 7.093992 AGGTTTTTGATTTGTTCGAAACAGAA 58.906 30.769 0.00 0.00 43.27 3.02
508 509 0.698238 TAGGGTTGAAGTGGCATGCT 59.302 50.000 18.92 0.00 0.00 3.79
511 512 1.180029 GGTTGAAGTGGCATGCTCAT 58.820 50.000 18.92 4.25 0.00 2.90
544 545 9.950496 CCTATAGGATTAGCAATGAGTGTTTAT 57.050 33.333 14.11 0.00 37.39 1.40
588 589 6.405278 AATTGTAAAAAGAGGTTGGAGTGG 57.595 37.500 0.00 0.00 0.00 4.00
600 601 5.892348 AGGTTGGAGTGGATGTTAGATTTT 58.108 37.500 0.00 0.00 0.00 1.82
605 606 8.616076 GTTGGAGTGGATGTTAGATTTTCTATG 58.384 37.037 0.00 0.00 0.00 2.23
606 607 8.089625 TGGAGTGGATGTTAGATTTTCTATGA 57.910 34.615 0.00 0.00 0.00 2.15
607 608 8.548025 TGGAGTGGATGTTAGATTTTCTATGAA 58.452 33.333 0.00 0.00 0.00 2.57
608 609 9.050601 GGAGTGGATGTTAGATTTTCTATGAAG 57.949 37.037 0.00 0.00 0.00 3.02
609 610 9.606631 GAGTGGATGTTAGATTTTCTATGAAGT 57.393 33.333 0.00 0.00 0.00 3.01
610 611 9.388506 AGTGGATGTTAGATTTTCTATGAAGTG 57.611 33.333 0.00 0.00 0.00 3.16
611 612 9.167311 GTGGATGTTAGATTTTCTATGAAGTGT 57.833 33.333 0.00 0.00 0.00 3.55
619 620 8.864069 AGATTTTCTATGAAGTGTATCGACTG 57.136 34.615 0.00 0.00 0.00 3.51
620 621 8.470805 AGATTTTCTATGAAGTGTATCGACTGT 58.529 33.333 0.00 0.00 0.00 3.55
621 622 8.635877 ATTTTCTATGAAGTGTATCGACTGTC 57.364 34.615 0.00 0.00 0.00 3.51
622 623 5.405331 TCTATGAAGTGTATCGACTGTCG 57.595 43.478 23.33 23.33 42.10 4.35
623 624 4.874396 TCTATGAAGTGTATCGACTGTCGT 59.126 41.667 27.16 17.58 41.35 4.34
624 625 3.466712 TGAAGTGTATCGACTGTCGTC 57.533 47.619 27.16 16.71 41.35 4.20
625 626 2.161012 TGAAGTGTATCGACTGTCGTCC 59.839 50.000 27.16 16.91 41.35 4.79
626 627 1.093159 AGTGTATCGACTGTCGTCCC 58.907 55.000 27.16 16.60 41.35 4.46
627 628 0.100146 GTGTATCGACTGTCGTCCCC 59.900 60.000 27.16 15.06 41.35 4.81
628 629 1.354506 GTATCGACTGTCGTCCCCG 59.645 63.158 27.16 4.07 41.35 5.73
629 630 1.078214 TATCGACTGTCGTCCCCGT 60.078 57.895 27.16 11.59 41.35 5.28
630 631 0.177836 TATCGACTGTCGTCCCCGTA 59.822 55.000 27.16 8.87 41.35 4.02
631 632 1.094073 ATCGACTGTCGTCCCCGTAG 61.094 60.000 27.16 0.00 41.35 3.51
632 633 2.037136 CGACTGTCGTCCCCGTAGT 61.037 63.158 21.30 0.00 36.82 2.73
633 634 1.505353 GACTGTCGTCCCCGTAGTG 59.495 63.158 0.00 0.00 34.50 2.74
634 635 1.228367 ACTGTCGTCCCCGTAGTGT 60.228 57.895 0.00 0.00 33.62 3.55
635 636 1.239968 ACTGTCGTCCCCGTAGTGTC 61.240 60.000 0.00 0.00 33.62 3.67
636 637 2.249557 CTGTCGTCCCCGTAGTGTCG 62.250 65.000 0.00 0.00 35.01 4.35
637 638 3.434319 TCGTCCCCGTAGTGTCGC 61.434 66.667 0.00 0.00 35.01 5.19
638 639 3.437795 CGTCCCCGTAGTGTCGCT 61.438 66.667 0.00 0.00 0.00 4.93
639 640 2.968206 GTCCCCGTAGTGTCGCTT 59.032 61.111 0.00 0.00 0.00 4.68
640 641 1.153881 GTCCCCGTAGTGTCGCTTC 60.154 63.158 0.00 0.00 0.00 3.86
641 642 2.202570 CCCCGTAGTGTCGCTTCG 60.203 66.667 5.53 5.53 37.67 3.79
642 643 2.879462 CCCGTAGTGTCGCTTCGC 60.879 66.667 6.89 0.00 36.79 4.70
654 655 2.887568 CTTCGCGGCTGCCACTAG 60.888 66.667 20.29 5.45 38.08 2.57
655 656 4.451150 TTCGCGGCTGCCACTAGG 62.451 66.667 20.29 2.53 38.08 3.02
700 701 9.918630 CTTTTATGATTTCTTGGACTTGATTGT 57.081 29.630 0.00 0.00 0.00 2.71
701 702 9.695526 TTTTATGATTTCTTGGACTTGATTGTG 57.304 29.630 0.00 0.00 0.00 3.33
702 703 5.125100 TGATTTCTTGGACTTGATTGTGC 57.875 39.130 0.00 0.00 0.00 4.57
703 704 4.828939 TGATTTCTTGGACTTGATTGTGCT 59.171 37.500 0.00 0.00 0.00 4.40
704 705 4.572985 TTTCTTGGACTTGATTGTGCTG 57.427 40.909 0.00 0.00 0.00 4.41
705 706 3.213206 TCTTGGACTTGATTGTGCTGT 57.787 42.857 0.00 0.00 0.00 4.40
706 707 2.880268 TCTTGGACTTGATTGTGCTGTG 59.120 45.455 0.00 0.00 0.00 3.66
707 708 1.608055 TGGACTTGATTGTGCTGTGG 58.392 50.000 0.00 0.00 0.00 4.17
708 709 0.242017 GGACTTGATTGTGCTGTGGC 59.758 55.000 0.00 0.00 39.26 5.01
709 710 0.242017 GACTTGATTGTGCTGTGGCC 59.758 55.000 0.00 0.00 37.74 5.36
710 711 1.181098 ACTTGATTGTGCTGTGGCCC 61.181 55.000 0.00 0.00 37.74 5.80
711 712 1.880819 CTTGATTGTGCTGTGGCCCC 61.881 60.000 0.00 0.00 37.74 5.80
712 713 2.283101 GATTGTGCTGTGGCCCCA 60.283 61.111 0.00 0.00 37.74 4.96
713 714 2.283388 ATTGTGCTGTGGCCCCAG 60.283 61.111 11.40 11.40 37.74 4.45
724 725 2.908015 GCCCCAGCCGTTATCTGA 59.092 61.111 0.00 0.00 33.54 3.27
725 726 1.451936 GCCCCAGCCGTTATCTGAT 59.548 57.895 0.00 0.00 33.54 2.90
726 727 0.179018 GCCCCAGCCGTTATCTGATT 60.179 55.000 0.00 0.00 33.54 2.57
727 728 1.597742 CCCCAGCCGTTATCTGATTG 58.402 55.000 0.00 0.00 33.54 2.67
728 729 1.134098 CCCCAGCCGTTATCTGATTGT 60.134 52.381 0.00 0.00 33.54 2.71
729 730 2.104111 CCCCAGCCGTTATCTGATTGTA 59.896 50.000 0.00 0.00 33.54 2.41
730 731 3.244561 CCCCAGCCGTTATCTGATTGTAT 60.245 47.826 0.00 0.00 33.54 2.29
731 732 3.748048 CCCAGCCGTTATCTGATTGTATG 59.252 47.826 0.00 0.00 33.54 2.39
732 733 3.748048 CCAGCCGTTATCTGATTGTATGG 59.252 47.826 0.00 0.00 33.54 2.74
733 734 4.503123 CCAGCCGTTATCTGATTGTATGGA 60.503 45.833 0.00 0.00 33.54 3.41
734 735 5.240891 CAGCCGTTATCTGATTGTATGGAT 58.759 41.667 0.00 0.00 33.54 3.41
735 736 5.349817 CAGCCGTTATCTGATTGTATGGATC 59.650 44.000 0.00 0.00 33.54 3.36
736 737 4.327357 GCCGTTATCTGATTGTATGGATCG 59.673 45.833 0.00 0.00 0.00 3.69
737 738 5.470368 CCGTTATCTGATTGTATGGATCGT 58.530 41.667 0.00 0.00 0.00 3.73
738 739 5.926542 CCGTTATCTGATTGTATGGATCGTT 59.073 40.000 0.00 0.00 0.00 3.85
739 740 6.128822 CCGTTATCTGATTGTATGGATCGTTG 60.129 42.308 0.00 0.00 0.00 4.10
740 741 6.593978 GTTATCTGATTGTATGGATCGTTGC 58.406 40.000 0.00 0.00 0.00 4.17
741 742 4.406648 TCTGATTGTATGGATCGTTGCT 57.593 40.909 0.00 0.00 0.00 3.91
742 743 4.769688 TCTGATTGTATGGATCGTTGCTT 58.230 39.130 0.00 0.00 0.00 3.91
743 744 5.185454 TCTGATTGTATGGATCGTTGCTTT 58.815 37.500 0.00 0.00 0.00 3.51
744 745 6.345298 TCTGATTGTATGGATCGTTGCTTTA 58.655 36.000 0.00 0.00 0.00 1.85
745 746 6.992123 TCTGATTGTATGGATCGTTGCTTTAT 59.008 34.615 0.00 0.00 0.00 1.40
746 747 7.498900 TCTGATTGTATGGATCGTTGCTTTATT 59.501 33.333 0.00 0.00 0.00 1.40
747 748 7.995289 TGATTGTATGGATCGTTGCTTTATTT 58.005 30.769 0.00 0.00 0.00 1.40
748 749 9.114952 TGATTGTATGGATCGTTGCTTTATTTA 57.885 29.630 0.00 0.00 0.00 1.40
782 783 6.857777 CGAAAGCCTATTTCATGAGAGATT 57.142 37.500 0.00 0.00 0.00 2.40
783 784 7.256756 CGAAAGCCTATTTCATGAGAGATTT 57.743 36.000 0.00 0.00 0.00 2.17
784 785 7.701445 CGAAAGCCTATTTCATGAGAGATTTT 58.299 34.615 0.00 0.45 0.00 1.82
785 786 7.854916 CGAAAGCCTATTTCATGAGAGATTTTC 59.145 37.037 0.00 7.61 0.00 2.29
786 787 8.820153 AAAGCCTATTTCATGAGAGATTTTCT 57.180 30.769 0.00 0.00 39.43 2.52
787 788 9.911788 AAAGCCTATTTCATGAGAGATTTTCTA 57.088 29.630 0.00 0.00 35.87 2.10
789 790 9.504708 AGCCTATTTCATGAGAGATTTTCTATG 57.495 33.333 0.00 0.00 35.87 2.23
798 799 8.763356 CATGAGAGATTTTCTATGAAGTGTAGC 58.237 37.037 0.00 0.00 35.87 3.58
805 806 9.334693 GATTTTCTATGAAGTGTAGCACAAAAG 57.665 33.333 2.01 0.00 36.74 2.27
810 811 8.097038 TCTATGAAGTGTAGCACAAAAGATTCT 58.903 33.333 2.01 0.00 36.74 2.40
1210 2494 0.321122 CAGCGAGCTCAAGGGTTCTT 60.321 55.000 15.40 0.00 0.00 2.52
1780 3478 4.039366 ACTCCCTCTGTCTAGTGTCAAAAC 59.961 45.833 0.00 0.00 0.00 2.43
1843 3541 7.325821 GTCATTATGTGATTTTGCTTTCGAACA 59.674 33.333 0.00 0.00 39.48 3.18
1855 3553 8.964367 TTTGCTTTCGAACATTTTATTTTTCG 57.036 26.923 0.00 0.00 41.71 3.46
1887 3585 2.092968 GCATGGGACTAGATGGTGTGAA 60.093 50.000 0.00 0.00 0.00 3.18
1899 3597 4.703575 AGATGGTGTGAAGTGGAATTCATG 59.296 41.667 7.93 0.00 41.05 3.07
1946 3644 8.696410 TTTCAATACAAAACAGGAACACTTTC 57.304 30.769 0.00 0.00 0.00 2.62
2305 4013 7.943447 AGATCCTTATGAGCTATCAAATTTGCT 59.057 33.333 13.54 6.88 38.14 3.91
2330 4038 4.811555 TTTGTGTGTGTATGTTGAGAGC 57.188 40.909 0.00 0.00 0.00 4.09
2488 4196 9.871238 GAAGAACTAATGTACCTTCTTACATGA 57.129 33.333 0.00 0.00 41.02 3.07
2580 4288 4.823442 TGCTCGGATTGATCTATGCAAATT 59.177 37.500 9.11 0.00 0.00 1.82
3029 4743 8.243426 TCATATTGATGGAAAAAGTAAGCACAC 58.757 33.333 0.00 0.00 33.49 3.82
3054 4768 7.976734 ACATCTCTTGTTCTATACAGTAGTTGC 59.023 37.037 0.00 0.00 38.19 4.17
3110 4824 5.007430 CAGTGCAAGAATATGGACATCTGTC 59.993 44.000 1.59 1.59 43.32 3.51
3167 7001 5.220024 GCGCAAGTTTCTTTTATCAATTCCG 60.220 40.000 0.30 0.00 41.68 4.30
3326 7160 7.840716 TCTTGACATCCCAAGGAAATATCAAAT 59.159 33.333 0.00 0.00 42.72 2.32
3380 7214 7.283127 AGTTTTCTGTCAGAAGTTAATGCTCAA 59.717 33.333 14.75 0.84 35.37 3.02
3803 9845 3.750652 TCTGATATGTTGAGTTTGCGCAA 59.249 39.130 21.02 21.02 32.12 4.85
3814 9856 2.674033 TGCGCAAATGCAGCTCCT 60.674 55.556 8.16 0.00 40.62 3.69
3959 10001 7.354751 AGATTCATAACCTCCTGAGTTCTAC 57.645 40.000 0.00 0.00 0.00 2.59
4004 10046 4.247380 GCCCTGAGCATCCCCTCG 62.247 72.222 0.00 0.00 42.97 4.63
4143 10185 3.756727 GCTTCAAGGCCCAGCTGC 61.757 66.667 8.66 0.00 0.00 5.25
4149 10191 2.895424 AAGGCCCAGCTGCGTAACT 61.895 57.895 8.66 0.00 0.00 2.24
4335 12229 4.715527 AATACTCGTCACCCTCAAGTAC 57.284 45.455 0.00 0.00 0.00 2.73
4396 12292 6.889198 ACAGTACATCCAGTATTGCAGTATT 58.111 36.000 0.00 0.00 42.38 1.89
4472 12368 2.729882 GCAGCAAAGCAATGAAGAGTTG 59.270 45.455 0.00 0.00 0.00 3.16
4933 12832 4.215613 GGACCTTTCCATATTAACGATGCC 59.784 45.833 0.00 0.00 42.30 4.40
5160 13062 8.352201 GTTTATATCAGGCATGTATTTCTTGCA 58.648 33.333 0.00 0.00 45.28 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.930760 CAAATTCGCATACCTTTTTAAAATCCA 58.069 29.630 0.55 0.00 0.00 3.41
70 71 9.918630 AATTCATGTACTTTTTCCAAATCTCTG 57.081 29.630 0.00 0.00 0.00 3.35
163 164 1.299850 GAGCGGTTTTGGTGTTGGC 60.300 57.895 0.00 0.00 0.00 4.52
167 168 2.542824 CGATTTTGAGCGGTTTTGGTGT 60.543 45.455 0.00 0.00 0.00 4.16
186 187 2.432146 CAAGATTCATCCCTGGTCTCGA 59.568 50.000 0.00 0.00 0.00 4.04
188 189 3.922171 ACAAGATTCATCCCTGGTCTC 57.078 47.619 0.00 0.00 0.00 3.36
209 210 1.764134 ACCCACAACTACTGAAACCGA 59.236 47.619 0.00 0.00 0.00 4.69
216 217 1.967319 ACTTGCACCCACAACTACTG 58.033 50.000 0.00 0.00 0.00 2.74
231 232 2.206750 TCTTCGAAACCGGACAACTTG 58.793 47.619 9.46 0.00 0.00 3.16
241 242 5.934935 TTTGGTTACTCATCTTCGAAACC 57.065 39.130 0.00 1.65 37.48 3.27
242 243 7.365840 AGATTTGGTTACTCATCTTCGAAAC 57.634 36.000 0.00 0.00 0.00 2.78
247 248 8.884726 GGAGTTTAGATTTGGTTACTCATCTTC 58.115 37.037 0.00 0.00 35.02 2.87
296 297 8.854117 TCCCGTAGAATAGGAAGAAAAGTATAC 58.146 37.037 0.00 0.00 0.00 1.47
300 301 6.616237 TTCCCGTAGAATAGGAAGAAAAGT 57.384 37.500 0.00 0.00 34.75 2.66
308 309 6.801718 TCTTGAAATTCCCGTAGAATAGGA 57.198 37.500 0.00 0.00 44.75 2.94
318 319 3.749609 ACCTACGTTTCTTGAAATTCCCG 59.250 43.478 0.00 1.55 0.00 5.14
334 335 5.451908 TGACAACGAAACTACTAACCTACG 58.548 41.667 0.00 0.00 0.00 3.51
335 336 7.698836 TTTGACAACGAAACTACTAACCTAC 57.301 36.000 0.00 0.00 0.00 3.18
346 347 1.580256 GTGCCGTTTTGACAACGAAAC 59.420 47.619 5.33 0.00 45.64 2.78
412 413 7.062956 AGGTTCTGTTTCGAACAAATCAAAAAC 59.937 33.333 0.00 0.00 43.87 2.43
425 426 0.611714 GGCCCTAGGTTCTGTTTCGA 59.388 55.000 8.29 0.00 0.00 3.71
426 427 0.613777 AGGCCCTAGGTTCTGTTTCG 59.386 55.000 8.29 0.00 0.00 3.46
427 428 1.909986 AGAGGCCCTAGGTTCTGTTTC 59.090 52.381 8.29 0.00 0.00 2.78
428 429 2.046280 AGAGGCCCTAGGTTCTGTTT 57.954 50.000 8.29 0.00 0.00 2.83
429 430 2.040412 CAAAGAGGCCCTAGGTTCTGTT 59.960 50.000 8.29 6.60 0.00 3.16
430 431 1.630878 CAAAGAGGCCCTAGGTTCTGT 59.369 52.381 8.29 0.10 0.00 3.41
431 432 1.909302 TCAAAGAGGCCCTAGGTTCTG 59.091 52.381 8.29 0.00 0.00 3.02
432 433 2.344093 TCAAAGAGGCCCTAGGTTCT 57.656 50.000 8.29 4.33 0.00 3.01
433 434 3.546724 GAATCAAAGAGGCCCTAGGTTC 58.453 50.000 8.29 2.57 0.00 3.62
434 435 2.092914 CGAATCAAAGAGGCCCTAGGTT 60.093 50.000 8.29 0.00 0.00 3.50
435 436 1.486726 CGAATCAAAGAGGCCCTAGGT 59.513 52.381 8.29 0.00 0.00 3.08
436 437 1.486726 ACGAATCAAAGAGGCCCTAGG 59.513 52.381 0.06 0.06 0.00 3.02
481 482 5.390387 TGCCACTTCAACCCTATACTTTTT 58.610 37.500 0.00 0.00 0.00 1.94
496 497 3.581024 TTCAAATGAGCATGCCACTTC 57.419 42.857 15.66 5.84 0.00 3.01
497 498 3.118884 GGATTCAAATGAGCATGCCACTT 60.119 43.478 15.66 5.54 0.00 3.16
536 537 5.105146 TGTTTTTCCTGTGGCAATAAACACT 60.105 36.000 0.00 0.00 38.39 3.55
544 545 2.834549 TCCTTTGTTTTTCCTGTGGCAA 59.165 40.909 0.00 0.00 0.00 4.52
547 548 5.427378 ACAATTCCTTTGTTTTTCCTGTGG 58.573 37.500 0.00 0.00 46.51 4.17
600 601 4.874396 ACGACAGTCGATACACTTCATAGA 59.126 41.667 29.53 0.00 43.74 1.98
622 623 1.153881 GAAGCGACACTACGGGGAC 60.154 63.158 0.00 0.00 0.00 4.46
623 624 2.693762 CGAAGCGACACTACGGGGA 61.694 63.158 0.00 0.00 0.00 4.81
624 625 2.202570 CGAAGCGACACTACGGGG 60.203 66.667 0.00 0.00 0.00 5.73
637 638 2.887568 CTAGTGGCAGCCGCGAAG 60.888 66.667 19.55 16.38 39.30 3.79
638 639 4.451150 CCTAGTGGCAGCCGCGAA 62.451 66.667 19.55 10.85 39.30 4.70
674 675 9.918630 ACAATCAAGTCCAAGAAATCATAAAAG 57.081 29.630 0.00 0.00 0.00 2.27
675 676 9.695526 CACAATCAAGTCCAAGAAATCATAAAA 57.304 29.630 0.00 0.00 0.00 1.52
676 677 7.814107 GCACAATCAAGTCCAAGAAATCATAAA 59.186 33.333 0.00 0.00 0.00 1.40
677 678 7.177216 AGCACAATCAAGTCCAAGAAATCATAA 59.823 33.333 0.00 0.00 0.00 1.90
678 679 6.660521 AGCACAATCAAGTCCAAGAAATCATA 59.339 34.615 0.00 0.00 0.00 2.15
679 680 5.479375 AGCACAATCAAGTCCAAGAAATCAT 59.521 36.000 0.00 0.00 0.00 2.45
680 681 4.828939 AGCACAATCAAGTCCAAGAAATCA 59.171 37.500 0.00 0.00 0.00 2.57
681 682 5.159209 CAGCACAATCAAGTCCAAGAAATC 58.841 41.667 0.00 0.00 0.00 2.17
682 683 4.586001 ACAGCACAATCAAGTCCAAGAAAT 59.414 37.500 0.00 0.00 0.00 2.17
683 684 3.953612 ACAGCACAATCAAGTCCAAGAAA 59.046 39.130 0.00 0.00 0.00 2.52
684 685 3.316029 CACAGCACAATCAAGTCCAAGAA 59.684 43.478 0.00 0.00 0.00 2.52
685 686 2.880268 CACAGCACAATCAAGTCCAAGA 59.120 45.455 0.00 0.00 0.00 3.02
686 687 2.030540 CCACAGCACAATCAAGTCCAAG 60.031 50.000 0.00 0.00 0.00 3.61
687 688 1.955778 CCACAGCACAATCAAGTCCAA 59.044 47.619 0.00 0.00 0.00 3.53
688 689 1.608055 CCACAGCACAATCAAGTCCA 58.392 50.000 0.00 0.00 0.00 4.02
689 690 0.242017 GCCACAGCACAATCAAGTCC 59.758 55.000 0.00 0.00 39.53 3.85
690 691 0.242017 GGCCACAGCACAATCAAGTC 59.758 55.000 0.00 0.00 42.56 3.01
691 692 1.181098 GGGCCACAGCACAATCAAGT 61.181 55.000 4.39 0.00 44.19 3.16
692 693 1.588082 GGGCCACAGCACAATCAAG 59.412 57.895 4.39 0.00 44.19 3.02
693 694 3.776158 GGGCCACAGCACAATCAA 58.224 55.556 4.39 0.00 44.19 2.57
707 708 0.179018 AATCAGATAACGGCTGGGGC 60.179 55.000 0.00 0.00 34.20 5.80
708 709 1.134098 ACAATCAGATAACGGCTGGGG 60.134 52.381 0.00 0.00 34.20 4.96
709 710 2.332063 ACAATCAGATAACGGCTGGG 57.668 50.000 0.00 0.00 34.20 4.45
710 711 3.748048 CCATACAATCAGATAACGGCTGG 59.252 47.826 0.00 0.00 34.20 4.85
711 712 4.631131 TCCATACAATCAGATAACGGCTG 58.369 43.478 0.00 0.00 34.71 4.85
712 713 4.955811 TCCATACAATCAGATAACGGCT 57.044 40.909 0.00 0.00 0.00 5.52
713 714 4.327357 CGATCCATACAATCAGATAACGGC 59.673 45.833 0.00 0.00 0.00 5.68
714 715 5.470368 ACGATCCATACAATCAGATAACGG 58.530 41.667 0.00 0.00 0.00 4.44
715 716 6.616471 GCAACGATCCATACAATCAGATAACG 60.616 42.308 0.00 0.00 0.00 3.18
716 717 6.425114 AGCAACGATCCATACAATCAGATAAC 59.575 38.462 0.00 0.00 0.00 1.89
717 718 6.524734 AGCAACGATCCATACAATCAGATAA 58.475 36.000 0.00 0.00 0.00 1.75
718 719 6.101650 AGCAACGATCCATACAATCAGATA 57.898 37.500 0.00 0.00 0.00 1.98
719 720 4.965814 AGCAACGATCCATACAATCAGAT 58.034 39.130 0.00 0.00 0.00 2.90
720 721 4.406648 AGCAACGATCCATACAATCAGA 57.593 40.909 0.00 0.00 0.00 3.27
721 722 5.490139 AAAGCAACGATCCATACAATCAG 57.510 39.130 0.00 0.00 0.00 2.90
722 723 7.566760 AATAAAGCAACGATCCATACAATCA 57.433 32.000 0.00 0.00 0.00 2.57
740 741 8.456885 GGCTTTCGCTCCGCTTTATAAATAAAG 61.457 40.741 15.20 15.20 42.50 1.85
741 742 6.196571 GCTTTCGCTCCGCTTTATAAATAAA 58.803 36.000 0.00 0.00 0.00 1.40
742 743 5.277634 GGCTTTCGCTCCGCTTTATAAATAA 60.278 40.000 0.00 0.00 36.09 1.40
743 744 4.212636 GGCTTTCGCTCCGCTTTATAAATA 59.787 41.667 0.00 0.00 36.09 1.40
744 745 3.003378 GGCTTTCGCTCCGCTTTATAAAT 59.997 43.478 0.00 0.00 36.09 1.40
745 746 2.353579 GGCTTTCGCTCCGCTTTATAAA 59.646 45.455 0.00 0.00 36.09 1.40
746 747 1.937899 GGCTTTCGCTCCGCTTTATAA 59.062 47.619 0.00 0.00 36.09 0.98
747 748 1.138266 AGGCTTTCGCTCCGCTTTATA 59.862 47.619 0.00 0.00 36.09 0.98
748 749 0.107654 AGGCTTTCGCTCCGCTTTAT 60.108 50.000 0.00 0.00 36.09 1.40
749 750 0.533491 TAGGCTTTCGCTCCGCTTTA 59.467 50.000 0.00 0.00 36.09 1.85
750 751 0.107654 ATAGGCTTTCGCTCCGCTTT 60.108 50.000 0.00 0.00 36.09 3.51
751 752 0.107654 AATAGGCTTTCGCTCCGCTT 60.108 50.000 0.00 0.00 36.09 4.68
752 753 0.107654 AAATAGGCTTTCGCTCCGCT 60.108 50.000 0.00 0.00 36.09 5.52
753 754 0.305009 GAAATAGGCTTTCGCTCCGC 59.695 55.000 0.00 0.00 36.09 5.54
754 755 1.651987 TGAAATAGGCTTTCGCTCCG 58.348 50.000 0.00 0.00 36.09 4.63
755 756 3.206150 TCATGAAATAGGCTTTCGCTCC 58.794 45.455 0.00 0.00 36.09 4.70
756 757 4.122776 TCTCATGAAATAGGCTTTCGCTC 58.877 43.478 0.00 0.00 36.09 5.03
757 758 4.125703 CTCTCATGAAATAGGCTTTCGCT 58.874 43.478 0.00 0.00 36.09 4.93
758 759 4.122776 TCTCTCATGAAATAGGCTTTCGC 58.877 43.478 0.00 0.00 0.00 4.70
759 760 6.857777 AATCTCTCATGAAATAGGCTTTCG 57.142 37.500 0.00 0.00 0.00 3.46
760 761 8.901793 AGAAAATCTCTCATGAAATAGGCTTTC 58.098 33.333 0.00 7.58 0.00 2.62
761 762 8.820153 AGAAAATCTCTCATGAAATAGGCTTT 57.180 30.769 0.00 0.00 0.00 3.51
763 764 9.504708 CATAGAAAATCTCTCATGAAATAGGCT 57.495 33.333 0.00 0.00 35.41 4.58
764 765 9.499479 TCATAGAAAATCTCTCATGAAATAGGC 57.501 33.333 0.00 0.00 35.41 3.93
769 770 9.730705 ACACTTCATAGAAAATCTCTCATGAAA 57.269 29.630 0.00 0.00 35.75 2.69
772 773 8.763356 GCTACACTTCATAGAAAATCTCTCATG 58.237 37.037 0.00 0.00 35.41 3.07
773 774 8.481314 TGCTACACTTCATAGAAAATCTCTCAT 58.519 33.333 0.00 0.00 35.41 2.90
774 775 7.761704 GTGCTACACTTCATAGAAAATCTCTCA 59.238 37.037 0.00 0.00 35.41 3.27
775 776 7.761704 TGTGCTACACTTCATAGAAAATCTCTC 59.238 37.037 0.00 0.00 33.87 3.20
776 777 7.615403 TGTGCTACACTTCATAGAAAATCTCT 58.385 34.615 0.00 0.00 35.26 3.10
777 778 7.834068 TGTGCTACACTTCATAGAAAATCTC 57.166 36.000 0.00 0.00 35.11 2.75
778 779 8.621532 TTTGTGCTACACTTCATAGAAAATCT 57.378 30.769 0.00 0.00 35.11 2.40
779 780 9.334693 CTTTTGTGCTACACTTCATAGAAAATC 57.665 33.333 0.00 0.00 35.11 2.17
780 781 9.066892 TCTTTTGTGCTACACTTCATAGAAAAT 57.933 29.630 0.00 0.00 35.11 1.82
781 782 8.445275 TCTTTTGTGCTACACTTCATAGAAAA 57.555 30.769 0.00 0.00 35.11 2.29
782 783 8.621532 ATCTTTTGTGCTACACTTCATAGAAA 57.378 30.769 0.00 0.00 35.11 2.52
783 784 8.621532 AATCTTTTGTGCTACACTTCATAGAA 57.378 30.769 0.00 0.00 35.11 2.10
784 785 8.097038 AGAATCTTTTGTGCTACACTTCATAGA 58.903 33.333 0.00 0.00 35.11 1.98
785 786 8.261492 AGAATCTTTTGTGCTACACTTCATAG 57.739 34.615 0.00 0.00 35.11 2.23
786 787 9.890629 ATAGAATCTTTTGTGCTACACTTCATA 57.109 29.630 0.00 0.00 35.11 2.15
787 788 8.798859 ATAGAATCTTTTGTGCTACACTTCAT 57.201 30.769 0.00 0.00 35.11 2.57
788 789 9.371136 CTATAGAATCTTTTGTGCTACACTTCA 57.629 33.333 0.00 0.00 35.11 3.02
789 790 8.821894 CCTATAGAATCTTTTGTGCTACACTTC 58.178 37.037 0.00 0.00 35.11 3.01
792 793 8.718102 TTCCTATAGAATCTTTTGTGCTACAC 57.282 34.615 0.00 0.00 34.56 2.90
947 985 1.332195 AGTTTGGCTGCCCTCTTTTC 58.668 50.000 17.53 0.00 0.00 2.29
951 989 1.425448 AGTTTAGTTTGGCTGCCCTCT 59.575 47.619 17.53 13.56 0.00 3.69
956 994 1.472878 GGGCTAGTTTAGTTTGGCTGC 59.527 52.381 0.00 0.00 0.00 5.25
1210 2494 0.387565 GGAAGAAAGCAAACGGCCAA 59.612 50.000 2.24 0.00 46.50 4.52
1612 3298 1.367840 CGCTGTAGGGCCCATCTAC 59.632 63.158 27.56 18.53 38.00 2.59
1780 3478 6.136071 CCTCTGTCTCAAAATGTAAAACGTG 58.864 40.000 0.00 0.00 0.00 4.49
1785 3483 6.187727 ACTCCCTCTGTCTCAAAATGTAAA 57.812 37.500 0.00 0.00 0.00 2.01
1855 3553 6.352016 TCTAGTCCCATGCAATCTCTAATC 57.648 41.667 0.00 0.00 0.00 1.75
1887 3585 3.486383 ACCGAACAACATGAATTCCACT 58.514 40.909 0.00 0.00 0.00 4.00
1899 3597 9.453325 TGAAATCATAAGTTTTTACCGAACAAC 57.547 29.630 0.00 0.00 0.00 3.32
1946 3644 1.268032 CCTTTAACGGCTGCGCATAAG 60.268 52.381 12.24 7.64 0.00 1.73
1985 3683 4.018050 AGCCTATCCACTTCAATGGTCTTT 60.018 41.667 0.00 0.00 40.95 2.52
2171 3869 1.202580 ACTCGAAGCACATATGAGCCC 60.203 52.381 19.79 11.98 31.86 5.19
2318 4026 3.059570 CACTTCGAACGCTCTCAACATAC 59.940 47.826 0.00 0.00 0.00 2.39
2330 4038 0.591170 ATTTGGGCACACTTCGAACG 59.409 50.000 0.00 0.00 0.00 3.95
2488 4196 7.665559 TCAACCACTATTAGATCAAGCTGTTTT 59.334 33.333 0.00 0.00 0.00 2.43
2580 4288 6.262944 GTGCAACCATACTTTATCATCATCCA 59.737 38.462 0.00 0.00 0.00 3.41
2673 4381 4.898265 TGAAAAACAAATGGGAGATGGACA 59.102 37.500 0.00 0.00 0.00 4.02
2674 4382 5.243730 TCTGAAAAACAAATGGGAGATGGAC 59.756 40.000 0.00 0.00 0.00 4.02
3006 4719 7.517614 TGTGTGCTTACTTTTTCCATCAATA 57.482 32.000 0.00 0.00 0.00 1.90
3029 4743 8.194104 AGCAACTACTGTATAGAACAAGAGATG 58.806 37.037 0.00 0.00 37.74 2.90
3167 7001 6.706716 AGAAAGTAACTGCAGGTACTTCTTTC 59.293 38.462 42.47 36.04 34.60 2.62
3266 7100 3.785486 TCAGAGCACAATATGGAGAACG 58.215 45.455 0.00 0.00 0.00 3.95
3326 7160 7.397476 TCATCTAGCTGTCCTTCTTTTTCTCTA 59.603 37.037 0.00 0.00 0.00 2.43
3380 7214 2.900546 AGTAGCACTTACTTGCCTCAGT 59.099 45.455 0.00 0.00 44.14 3.41
3803 9845 3.192844 CAGTCATTTTCAGGAGCTGCATT 59.807 43.478 8.35 0.00 0.00 3.56
3814 9856 4.922206 ACAGCCTATTCCAGTCATTTTCA 58.078 39.130 0.00 0.00 0.00 2.69
3959 10001 7.013529 GGCACTGACAAGTTAAAATAGTTACG 58.986 38.462 0.00 0.00 32.98 3.18
4275 12162 1.186267 ACAGAACCCTCCACGAGTCC 61.186 60.000 0.00 0.00 0.00 3.85
4281 12168 3.965694 TCTCTAGTACAGAACCCTCCAC 58.034 50.000 0.00 0.00 31.12 4.02
4335 12229 6.652481 CCTATAAAACAGAGATGCCATGTAGG 59.348 42.308 0.00 0.00 41.84 3.18
4396 12292 4.890088 AGTGCTTTAACCGTGTAAGATCA 58.110 39.130 0.00 0.00 0.00 2.92
4444 12340 5.591472 TCTTCATTGCTTTGCTGCATATAGT 59.409 36.000 1.84 0.00 42.96 2.12
4578 12475 7.517614 TGTTAGATGAACAAAGCCAACATTA 57.482 32.000 0.00 0.00 45.23 1.90
4604 12501 6.586344 TGCAATTCAGGGAACAAACATTTTA 58.414 32.000 0.00 0.00 0.00 1.52
4790 12689 7.096147 GGACGAATTCGAACTAGTAATGAATCC 60.096 40.741 33.05 19.21 43.02 3.01
4856 12755 8.500773 TCGGAGAATTATTCAACTTACAACAAC 58.499 33.333 7.74 0.00 0.00 3.32
4933 12832 7.687941 ACATGTAATTTAGAGGTCTGGTTTG 57.312 36.000 0.00 0.00 0.00 2.93
4972 12871 6.466812 CCCAAATCTGAATAAATAATGCCCC 58.533 40.000 0.00 0.00 0.00 5.80
4982 12883 3.631250 GTCCAGCCCCAAATCTGAATAA 58.369 45.455 0.00 0.00 32.26 1.40
5160 13062 6.950842 TCTCAACTCATTGACACCAATCTAT 58.049 36.000 0.00 0.00 40.81 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.