Multiple sequence alignment - TraesCS1D01G166200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G166200 chr1D 100.000 4414 0 0 1 4414 237325176 237320763 0.000000e+00 8152.0
1 TraesCS1D01G166200 chr1B 96.300 1892 55 10 1263 3141 369204851 369206740 0.000000e+00 3092.0
2 TraesCS1D01G166200 chr1B 91.176 612 33 6 3804 4414 369225421 369226012 0.000000e+00 811.0
3 TraesCS1D01G166200 chr1B 90.598 585 34 11 1 577 369198458 369199029 0.000000e+00 756.0
4 TraesCS1D01G166200 chr1B 81.616 495 59 19 782 1258 369204331 369204811 8.960000e-102 381.0
5 TraesCS1D01G166200 chr1A 96.712 1612 45 2 1263 2874 308380970 308382573 0.000000e+00 2676.0
6 TraesCS1D01G166200 chr1A 93.609 1064 42 6 3060 4119 308384301 308385342 0.000000e+00 1565.0
7 TraesCS1D01G166200 chr1A 92.267 569 30 6 1 568 308210566 308211121 0.000000e+00 795.0
8 TraesCS1D01G166200 chr1A 77.805 802 138 32 3596 4377 561623114 561622333 4.020000e-125 459.0
9 TraesCS1D01G166200 chr1A 94.020 301 15 3 4115 4414 308389694 308389992 1.870000e-123 453.0
10 TraesCS1D01G166200 chr1A 82.617 512 65 12 759 1260 308380422 308380919 8.770000e-117 431.0
11 TraesCS1D01G166200 chr1A 97.203 143 4 0 2931 3073 308382578 308382720 4.410000e-60 243.0
12 TraesCS1D01G166200 chr3D 83.070 1394 209 21 1393 2765 603015510 603014123 0.000000e+00 1242.0
13 TraesCS1D01G166200 chr3D 77.536 690 132 17 1391 2064 130974535 130975217 1.150000e-105 394.0
14 TraesCS1D01G166200 chr4A 81.649 1504 227 30 1296 2765 631579045 631577557 0.000000e+00 1203.0
15 TraesCS1D01G166200 chr4A 77.698 695 123 25 3711 4381 621250399 621249713 3.200000e-106 396.0
16 TraesCS1D01G166200 chr4A 75.975 795 163 21 3598 4371 597896842 597896055 6.930000e-103 385.0
17 TraesCS1D01G166200 chr4A 76.234 770 138 34 3634 4384 91597382 91596639 2.510000e-97 366.0
18 TraesCS1D01G166200 chr4A 75.564 798 148 29 3596 4371 613370628 613371400 2.530000e-92 350.0
19 TraesCS1D01G166200 chr5B 82.235 1396 219 18 1392 2765 679324985 679326373 0.000000e+00 1177.0
20 TraesCS1D01G166200 chr5B 78.506 763 135 15 1396 2143 62950953 62950205 1.440000e-129 473.0
21 TraesCS1D01G166200 chr5B 83.415 410 58 10 3596 4002 410546808 410547210 5.390000e-99 372.0
22 TraesCS1D01G166200 chr5D 80.502 1513 239 33 1293 2765 538344027 538345523 0.000000e+00 1109.0
23 TraesCS1D01G166200 chr3B 81.189 723 117 15 1735 2439 810654380 810653659 8.290000e-157 564.0
24 TraesCS1D01G166200 chr3A 80.541 740 120 12 1734 2455 732934970 732934237 8.350000e-152 547.0
25 TraesCS1D01G166200 chr3A 83.789 475 57 9 1391 1862 732923195 732922738 2.440000e-117 433.0
26 TraesCS1D01G166200 chr3A 81.044 517 86 9 1779 2283 732922728 732922212 6.880000e-108 401.0
27 TraesCS1D01G166200 chr2B 77.484 795 142 25 3608 4381 157270930 157271708 4.050000e-120 442.0
28 TraesCS1D01G166200 chr7A 76.942 798 158 21 3596 4377 200236235 200235448 8.770000e-117 431.0
29 TraesCS1D01G166200 chr2D 76.220 799 159 24 3596 4371 63529247 63530037 1.150000e-105 394.0
30 TraesCS1D01G166200 chr6D 76.233 791 149 30 3596 4367 7245634 7244864 2.490000e-102 383.0
31 TraesCS1D01G166200 chr5A 82.494 417 57 10 3629 4038 450216329 450216736 7.020000e-93 351.0
32 TraesCS1D01G166200 chr5A 74.473 807 164 32 3590 4371 606778245 606777456 1.190000e-80 311.0
33 TraesCS1D01G166200 chr7D 74.611 642 138 21 3751 4377 625216536 625215905 4.380000e-65 259.0
34 TraesCS1D01G166200 chr7D 94.872 39 2 0 1636 1674 177876934 177876972 1.330000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G166200 chr1D 237320763 237325176 4413 True 8152.00 8152 100.00000 1 4414 1 chr1D.!!$R1 4413
1 TraesCS1D01G166200 chr1B 369204331 369206740 2409 False 1736.50 3092 88.95800 782 3141 2 chr1B.!!$F3 2359
2 TraesCS1D01G166200 chr1B 369225421 369226012 591 False 811.00 811 91.17600 3804 4414 1 chr1B.!!$F2 610
3 TraesCS1D01G166200 chr1B 369198458 369199029 571 False 756.00 756 90.59800 1 577 1 chr1B.!!$F1 576
4 TraesCS1D01G166200 chr1A 308380422 308385342 4920 False 1228.75 2676 92.53525 759 4119 4 chr1A.!!$F3 3360
5 TraesCS1D01G166200 chr1A 308210566 308211121 555 False 795.00 795 92.26700 1 568 1 chr1A.!!$F1 567
6 TraesCS1D01G166200 chr1A 561622333 561623114 781 True 459.00 459 77.80500 3596 4377 1 chr1A.!!$R1 781
7 TraesCS1D01G166200 chr3D 603014123 603015510 1387 True 1242.00 1242 83.07000 1393 2765 1 chr3D.!!$R1 1372
8 TraesCS1D01G166200 chr3D 130974535 130975217 682 False 394.00 394 77.53600 1391 2064 1 chr3D.!!$F1 673
9 TraesCS1D01G166200 chr4A 631577557 631579045 1488 True 1203.00 1203 81.64900 1296 2765 1 chr4A.!!$R4 1469
10 TraesCS1D01G166200 chr4A 621249713 621250399 686 True 396.00 396 77.69800 3711 4381 1 chr4A.!!$R3 670
11 TraesCS1D01G166200 chr4A 597896055 597896842 787 True 385.00 385 75.97500 3598 4371 1 chr4A.!!$R2 773
12 TraesCS1D01G166200 chr4A 91596639 91597382 743 True 366.00 366 76.23400 3634 4384 1 chr4A.!!$R1 750
13 TraesCS1D01G166200 chr4A 613370628 613371400 772 False 350.00 350 75.56400 3596 4371 1 chr4A.!!$F1 775
14 TraesCS1D01G166200 chr5B 679324985 679326373 1388 False 1177.00 1177 82.23500 1392 2765 1 chr5B.!!$F2 1373
15 TraesCS1D01G166200 chr5B 62950205 62950953 748 True 473.00 473 78.50600 1396 2143 1 chr5B.!!$R1 747
16 TraesCS1D01G166200 chr5D 538344027 538345523 1496 False 1109.00 1109 80.50200 1293 2765 1 chr5D.!!$F1 1472
17 TraesCS1D01G166200 chr3B 810653659 810654380 721 True 564.00 564 81.18900 1735 2439 1 chr3B.!!$R1 704
18 TraesCS1D01G166200 chr3A 732934237 732934970 733 True 547.00 547 80.54100 1734 2455 1 chr3A.!!$R1 721
19 TraesCS1D01G166200 chr3A 732922212 732923195 983 True 417.00 433 82.41650 1391 2283 2 chr3A.!!$R2 892
20 TraesCS1D01G166200 chr2B 157270930 157271708 778 False 442.00 442 77.48400 3608 4381 1 chr2B.!!$F1 773
21 TraesCS1D01G166200 chr7A 200235448 200236235 787 True 431.00 431 76.94200 3596 4377 1 chr7A.!!$R1 781
22 TraesCS1D01G166200 chr2D 63529247 63530037 790 False 394.00 394 76.22000 3596 4371 1 chr2D.!!$F1 775
23 TraesCS1D01G166200 chr6D 7244864 7245634 770 True 383.00 383 76.23300 3596 4367 1 chr6D.!!$R1 771
24 TraesCS1D01G166200 chr5A 606777456 606778245 789 True 311.00 311 74.47300 3590 4371 1 chr5A.!!$R1 781
25 TraesCS1D01G166200 chr7D 625215905 625216536 631 True 259.00 259 74.61100 3751 4377 1 chr7D.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 765 0.173935 CGGCTACACCAACGACCATA 59.826 55.0 0.00 0.00 39.03 2.74 F
1166 1197 0.172578 TCTGTTCCTCCGCGTACATG 59.827 55.0 4.92 0.00 0.00 3.21 F
1167 1198 0.172578 CTGTTCCTCCGCGTACATGA 59.827 55.0 4.92 0.00 0.00 3.07 F
1168 1199 0.172578 TGTTCCTCCGCGTACATGAG 59.827 55.0 4.92 3.61 0.00 2.90 F
2119 2348 0.388134 TTCGTGGACGTGCTCTTAGC 60.388 55.0 8.99 0.00 38.93 3.09 F
3167 5039 0.998928 TGGGCAATCTTAGGGAAGCA 59.001 50.0 0.00 0.00 32.87 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1895 0.531974 GGTTGTCGCTCAGGTTCACA 60.532 55.000 0.00 0.00 0.00 3.58 R
2114 2339 1.522580 GAGCTCCTTGGCGGCTAAG 60.523 63.158 18.04 18.04 36.37 2.18 R
2540 2790 1.761174 GAAGTCTTGCCCCACCTCA 59.239 57.895 0.00 0.00 0.00 3.86 R
2624 2880 3.150335 CTCGCTAGGGCCAGCTCA 61.150 66.667 20.55 9.92 39.51 4.26 R
3216 5088 0.452987 CAATCCAGCCACATGTTCCG 59.547 55.000 0.00 0.00 0.00 4.30 R
4327 6253 3.599343 TCACAATCAATCAAGGTCTCCG 58.401 45.455 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.685765 TGTCGCCCCACTATCTGCT 60.686 57.895 0.00 0.00 0.00 4.24
115 116 2.650116 GCTCACTCCCTCTCCGCAA 61.650 63.158 0.00 0.00 0.00 4.85
133 134 2.787994 CAACAGCCAATGTCCTCTTCT 58.212 47.619 0.00 0.00 43.00 2.85
205 206 1.183549 ACAGTAGTAGGACAAGCCGG 58.816 55.000 0.00 0.00 43.43 6.13
248 249 1.768275 TGGGCTCATAATCACCACGAT 59.232 47.619 0.00 0.00 35.12 3.73
254 255 5.807520 GGCTCATAATCACCACGATATACAG 59.192 44.000 0.00 0.00 32.51 2.74
261 262 0.508641 CCACGATATACAGCTTGCGC 59.491 55.000 0.00 0.00 0.00 6.09
263 264 0.939577 ACGATATACAGCTTGCGCCG 60.940 55.000 4.18 0.00 36.60 6.46
267 268 2.916502 TATACAGCTTGCGCCGTGGG 62.917 60.000 4.18 0.00 36.60 4.61
290 291 2.112815 GCACATACTGCCGGGGAAC 61.113 63.158 2.18 0.00 40.42 3.62
327 328 8.204160 TGACTTTCTGTATTCTTGAGAAGTTCA 58.796 33.333 5.50 0.00 37.48 3.18
352 353 1.526887 CTGTCTTACTGGCAACACGTG 59.473 52.381 15.48 15.48 46.17 4.49
413 415 8.837099 TTTTTGTCTATCATTATGGGATTGGT 57.163 30.769 0.00 0.00 0.00 3.67
414 416 8.837099 TTTTGTCTATCATTATGGGATTGGTT 57.163 30.769 0.00 0.00 0.00 3.67
425 435 4.533919 TGGGATTGGTTGTTAGCATTTG 57.466 40.909 0.00 0.00 0.00 2.32
461 471 7.592938 TGTCCAATATTTGTTGAACTGTGATC 58.407 34.615 0.00 0.00 0.00 2.92
521 531 9.606631 ATCAGTAGAAACATTTTAGAGATGACC 57.393 33.333 0.00 0.00 0.00 4.02
529 539 8.723942 AACATTTTAGAGATGACCATAGTGTC 57.276 34.615 0.00 0.00 35.77 3.67
542 552 8.267620 TGACCATAGTGTCAAATTGTTCTATG 57.732 34.615 17.83 17.83 42.06 2.23
550 560 7.121611 AGTGTCAAATTGTTCTATGCATGATCA 59.878 33.333 10.16 0.00 0.00 2.92
582 592 5.304686 TGGAACAGTAGGAAATGAGTTGT 57.695 39.130 0.00 0.00 0.00 3.32
583 593 6.428083 TGGAACAGTAGGAAATGAGTTGTA 57.572 37.500 0.00 0.00 0.00 2.41
584 594 6.464222 TGGAACAGTAGGAAATGAGTTGTAG 58.536 40.000 0.00 0.00 0.00 2.74
585 595 6.042781 TGGAACAGTAGGAAATGAGTTGTAGT 59.957 38.462 0.00 0.00 0.00 2.73
586 596 7.233962 TGGAACAGTAGGAAATGAGTTGTAGTA 59.766 37.037 0.00 0.00 0.00 1.82
587 597 8.258708 GGAACAGTAGGAAATGAGTTGTAGTAT 58.741 37.037 0.00 0.00 0.00 2.12
614 624 9.550406 AATGTCAAATTGTTTTGTTCATGATCT 57.450 25.926 0.00 0.00 42.37 2.75
615 625 8.945481 TGTCAAATTGTTTTGTTCATGATCTT 57.055 26.923 0.00 0.00 42.37 2.40
616 626 8.819015 TGTCAAATTGTTTTGTTCATGATCTTG 58.181 29.630 0.00 2.18 42.37 3.02
617 627 8.819974 GTCAAATTGTTTTGTTCATGATCTTGT 58.180 29.630 8.33 0.00 42.37 3.16
618 628 9.033481 TCAAATTGTTTTGTTCATGATCTTGTC 57.967 29.630 8.33 4.61 42.37 3.18
619 629 7.951530 AATTGTTTTGTTCATGATCTTGTCC 57.048 32.000 8.33 1.95 0.00 4.02
620 630 6.462552 TTGTTTTGTTCATGATCTTGTCCA 57.537 33.333 8.33 4.23 0.00 4.02
621 631 6.462552 TGTTTTGTTCATGATCTTGTCCAA 57.537 33.333 8.33 9.19 0.00 3.53
622 632 7.053316 TGTTTTGTTCATGATCTTGTCCAAT 57.947 32.000 8.33 0.00 0.00 3.16
623 633 8.175925 TGTTTTGTTCATGATCTTGTCCAATA 57.824 30.769 8.33 5.64 0.00 1.90
624 634 8.805175 TGTTTTGTTCATGATCTTGTCCAATAT 58.195 29.630 8.33 0.00 0.00 1.28
625 635 9.643693 GTTTTGTTCATGATCTTGTCCAATATT 57.356 29.630 8.33 0.00 0.00 1.28
627 637 9.859427 TTTGTTCATGATCTTGTCCAATATTTC 57.141 29.630 8.33 0.00 0.00 2.17
628 638 8.578448 TGTTCATGATCTTGTCCAATATTTCA 57.422 30.769 8.33 0.00 0.00 2.69
629 639 8.461222 TGTTCATGATCTTGTCCAATATTTCAC 58.539 33.333 8.33 0.00 0.00 3.18
630 640 8.461222 GTTCATGATCTTGTCCAATATTTCACA 58.539 33.333 8.33 0.00 0.00 3.58
631 641 7.988737 TCATGATCTTGTCCAATATTTCACAC 58.011 34.615 8.33 0.00 0.00 3.82
632 642 6.421377 TGATCTTGTCCAATATTTCACACG 57.579 37.500 0.00 0.00 0.00 4.49
633 643 6.169800 TGATCTTGTCCAATATTTCACACGA 58.830 36.000 0.00 5.60 0.00 4.35
634 644 5.856126 TCTTGTCCAATATTTCACACGAC 57.144 39.130 0.00 0.00 0.00 4.34
635 645 5.547465 TCTTGTCCAATATTTCACACGACT 58.453 37.500 0.00 0.00 0.00 4.18
636 646 5.408299 TCTTGTCCAATATTTCACACGACTG 59.592 40.000 0.00 0.00 0.00 3.51
637 647 3.435327 TGTCCAATATTTCACACGACTGC 59.565 43.478 0.00 0.00 0.00 4.40
638 648 3.684788 GTCCAATATTTCACACGACTGCT 59.315 43.478 0.00 0.00 0.00 4.24
639 649 4.868171 GTCCAATATTTCACACGACTGCTA 59.132 41.667 0.00 0.00 0.00 3.49
640 650 5.523916 GTCCAATATTTCACACGACTGCTAT 59.476 40.000 0.00 0.00 0.00 2.97
641 651 6.700081 GTCCAATATTTCACACGACTGCTATA 59.300 38.462 0.00 0.00 0.00 1.31
642 652 7.223971 GTCCAATATTTCACACGACTGCTATAA 59.776 37.037 0.00 0.00 0.00 0.98
643 653 7.931407 TCCAATATTTCACACGACTGCTATAAT 59.069 33.333 0.00 0.00 0.00 1.28
644 654 8.011673 CCAATATTTCACACGACTGCTATAATG 58.988 37.037 0.00 0.00 0.00 1.90
645 655 8.764287 CAATATTTCACACGACTGCTATAATGA 58.236 33.333 0.00 0.00 0.00 2.57
646 656 8.887036 ATATTTCACACGACTGCTATAATGAA 57.113 30.769 0.00 0.00 0.00 2.57
647 657 6.403333 TTTCACACGACTGCTATAATGAAC 57.597 37.500 0.00 0.00 0.00 3.18
648 658 5.324784 TCACACGACTGCTATAATGAACT 57.675 39.130 0.00 0.00 0.00 3.01
649 659 6.445357 TCACACGACTGCTATAATGAACTA 57.555 37.500 0.00 0.00 0.00 2.24
650 660 6.495706 TCACACGACTGCTATAATGAACTAG 58.504 40.000 0.00 0.00 0.00 2.57
651 661 6.317893 TCACACGACTGCTATAATGAACTAGA 59.682 38.462 0.00 0.00 0.00 2.43
652 662 6.972901 CACACGACTGCTATAATGAACTAGAA 59.027 38.462 0.00 0.00 0.00 2.10
653 663 7.166638 CACACGACTGCTATAATGAACTAGAAG 59.833 40.741 0.00 0.00 0.00 2.85
654 664 7.148052 ACACGACTGCTATAATGAACTAGAAGT 60.148 37.037 0.00 0.00 36.69 3.01
655 665 7.377397 CACGACTGCTATAATGAACTAGAAGTC 59.623 40.741 0.00 7.40 43.17 3.01
656 666 7.283580 ACGACTGCTATAATGAACTAGAAGTCT 59.716 37.037 13.27 2.00 43.91 3.24
657 667 8.132362 CGACTGCTATAATGAACTAGAAGTCTT 58.868 37.037 13.27 0.00 43.91 3.01
658 668 9.458374 GACTGCTATAATGAACTAGAAGTCTTC 57.542 37.037 4.26 4.26 43.23 2.87
659 669 8.417884 ACTGCTATAATGAACTAGAAGTCTTCC 58.582 37.037 9.04 0.00 29.36 3.46
660 670 8.540507 TGCTATAATGAACTAGAAGTCTTCCT 57.459 34.615 9.04 0.02 0.00 3.36
661 671 8.634444 TGCTATAATGAACTAGAAGTCTTCCTC 58.366 37.037 9.04 2.48 0.00 3.71
662 672 8.634444 GCTATAATGAACTAGAAGTCTTCCTCA 58.366 37.037 9.04 7.64 0.00 3.86
665 675 7.546250 AATGAACTAGAAGTCTTCCTCAAGA 57.454 36.000 9.04 0.00 36.19 3.02
666 676 7.732222 ATGAACTAGAAGTCTTCCTCAAGAT 57.268 36.000 9.04 0.00 40.88 2.40
667 677 6.929625 TGAACTAGAAGTCTTCCTCAAGATG 58.070 40.000 9.04 0.00 40.88 2.90
668 678 6.721668 TGAACTAGAAGTCTTCCTCAAGATGA 59.278 38.462 9.04 0.00 40.88 2.92
669 679 6.524101 ACTAGAAGTCTTCCTCAAGATGAC 57.476 41.667 9.04 1.60 45.61 3.06
670 680 6.013379 ACTAGAAGTCTTCCTCAAGATGACA 58.987 40.000 9.04 0.00 46.94 3.58
671 681 5.815233 AGAAGTCTTCCTCAAGATGACAA 57.185 39.130 9.04 0.00 46.94 3.18
672 682 5.792741 AGAAGTCTTCCTCAAGATGACAAG 58.207 41.667 9.04 0.00 46.94 3.16
673 683 5.541868 AGAAGTCTTCCTCAAGATGACAAGA 59.458 40.000 9.04 0.00 46.94 3.02
674 684 5.404466 AGTCTTCCTCAAGATGACAAGAG 57.596 43.478 10.26 0.00 46.94 2.85
675 685 4.222588 AGTCTTCCTCAAGATGACAAGAGG 59.777 45.833 10.26 0.00 46.94 3.69
676 686 4.020662 GTCTTCCTCAAGATGACAAGAGGT 60.021 45.833 13.15 0.00 46.09 3.85
677 687 4.594920 TCTTCCTCAAGATGACAAGAGGTT 59.405 41.667 13.15 0.00 46.09 3.50
678 688 4.277515 TCCTCAAGATGACAAGAGGTTG 57.722 45.455 13.15 0.00 46.09 3.77
679 689 7.878851 TCTTCCTCAAGATGACAAGAGGTTGT 61.879 42.308 13.15 0.00 46.09 3.32
680 690 8.618736 TCTTCCTCAAGATGACAAGAGGTTGTA 61.619 40.741 13.15 0.00 46.09 2.41
692 702 6.735130 ACAAGAGGTTGTACAAAAGTTATGC 58.265 36.000 10.51 0.00 45.48 3.14
693 703 6.320164 ACAAGAGGTTGTACAAAAGTTATGCA 59.680 34.615 10.51 0.00 45.48 3.96
694 704 6.313744 AGAGGTTGTACAAAAGTTATGCAC 57.686 37.500 10.51 0.00 0.00 4.57
695 705 5.049680 AGAGGTTGTACAAAAGTTATGCACG 60.050 40.000 10.51 0.00 0.00 5.34
696 706 3.666797 GGTTGTACAAAAGTTATGCACGC 59.333 43.478 10.51 0.00 0.00 5.34
697 707 3.546002 TGTACAAAAGTTATGCACGCC 57.454 42.857 0.00 0.00 0.00 5.68
698 708 3.142951 TGTACAAAAGTTATGCACGCCT 58.857 40.909 0.00 0.00 0.00 5.52
699 709 3.566322 TGTACAAAAGTTATGCACGCCTT 59.434 39.130 0.00 0.00 0.00 4.35
700 710 3.726291 ACAAAAGTTATGCACGCCTTT 57.274 38.095 0.00 0.00 0.00 3.11
701 711 3.380142 ACAAAAGTTATGCACGCCTTTG 58.620 40.909 6.98 7.51 33.72 2.77
702 712 2.723124 AAAGTTATGCACGCCTTTGG 57.277 45.000 0.00 0.00 0.00 3.28
703 713 0.243636 AAGTTATGCACGCCTTTGGC 59.756 50.000 0.00 0.00 46.75 4.52
713 723 3.930504 CCTTTGGCATGGAGGAGC 58.069 61.111 6.29 0.00 32.11 4.70
714 724 1.000521 CCTTTGGCATGGAGGAGCA 60.001 57.895 6.29 0.00 32.11 4.26
715 725 1.318158 CCTTTGGCATGGAGGAGCAC 61.318 60.000 6.29 0.00 32.11 4.40
716 726 0.609957 CTTTGGCATGGAGGAGCACA 60.610 55.000 0.00 0.00 0.00 4.57
717 727 0.895100 TTTGGCATGGAGGAGCACAC 60.895 55.000 0.00 0.00 0.00 3.82
718 728 2.066700 TTGGCATGGAGGAGCACACA 62.067 55.000 0.00 0.00 0.00 3.72
719 729 1.303561 GGCATGGAGGAGCACACAA 60.304 57.895 0.00 0.00 0.00 3.33
720 730 0.682209 GGCATGGAGGAGCACACAAT 60.682 55.000 0.00 0.00 0.00 2.71
721 731 1.408683 GGCATGGAGGAGCACACAATA 60.409 52.381 0.00 0.00 0.00 1.90
722 732 1.672881 GCATGGAGGAGCACACAATAC 59.327 52.381 0.00 0.00 0.00 1.89
723 733 1.935873 CATGGAGGAGCACACAATACG 59.064 52.381 0.00 0.00 0.00 3.06
724 734 0.249120 TGGAGGAGCACACAATACGG 59.751 55.000 0.00 0.00 0.00 4.02
725 735 0.462047 GGAGGAGCACACAATACGGG 60.462 60.000 0.00 0.00 0.00 5.28
726 736 1.078426 AGGAGCACACAATACGGGC 60.078 57.895 0.00 0.00 0.00 6.13
727 737 1.376683 GGAGCACACAATACGGGCA 60.377 57.895 0.00 0.00 0.00 5.36
728 738 0.748005 GGAGCACACAATACGGGCAT 60.748 55.000 0.00 0.00 0.00 4.40
729 739 1.094785 GAGCACACAATACGGGCATT 58.905 50.000 0.00 0.00 0.00 3.56
730 740 1.064060 GAGCACACAATACGGGCATTC 59.936 52.381 0.00 0.00 0.00 2.67
731 741 0.808125 GCACACAATACGGGCATTCA 59.192 50.000 0.00 0.00 0.00 2.57
732 742 1.201181 GCACACAATACGGGCATTCAA 59.799 47.619 0.00 0.00 0.00 2.69
733 743 2.862512 CACACAATACGGGCATTCAAC 58.137 47.619 0.00 0.00 0.00 3.18
734 744 2.487762 CACACAATACGGGCATTCAACT 59.512 45.455 0.00 0.00 0.00 3.16
735 745 3.057596 CACACAATACGGGCATTCAACTT 60.058 43.478 0.00 0.00 0.00 2.66
736 746 3.190535 ACACAATACGGGCATTCAACTTC 59.809 43.478 0.00 0.00 0.00 3.01
737 747 2.418628 ACAATACGGGCATTCAACTTCG 59.581 45.455 0.00 0.00 0.00 3.79
738 748 1.663695 ATACGGGCATTCAACTTCGG 58.336 50.000 0.00 0.00 0.00 4.30
739 749 1.022451 TACGGGCATTCAACTTCGGC 61.022 55.000 0.00 0.00 0.00 5.54
740 750 2.040544 CGGGCATTCAACTTCGGCT 61.041 57.895 0.00 0.00 0.00 5.52
741 751 0.742990 CGGGCATTCAACTTCGGCTA 60.743 55.000 0.00 0.00 0.00 3.93
742 752 0.733150 GGGCATTCAACTTCGGCTAC 59.267 55.000 0.00 0.00 0.00 3.58
743 753 1.448985 GGCATTCAACTTCGGCTACA 58.551 50.000 0.00 0.00 0.00 2.74
744 754 1.130561 GGCATTCAACTTCGGCTACAC 59.869 52.381 0.00 0.00 0.00 2.90
745 755 1.130561 GCATTCAACTTCGGCTACACC 59.869 52.381 0.00 0.00 0.00 4.16
746 756 2.422597 CATTCAACTTCGGCTACACCA 58.577 47.619 0.00 0.00 39.03 4.17
747 757 2.623878 TTCAACTTCGGCTACACCAA 57.376 45.000 0.00 0.00 39.03 3.67
748 758 1.873698 TCAACTTCGGCTACACCAAC 58.126 50.000 0.00 0.00 39.03 3.77
749 759 0.511221 CAACTTCGGCTACACCAACG 59.489 55.000 0.00 0.00 39.03 4.10
750 760 0.390124 AACTTCGGCTACACCAACGA 59.610 50.000 0.00 0.00 39.03 3.85
751 761 0.319297 ACTTCGGCTACACCAACGAC 60.319 55.000 0.00 0.00 39.03 4.34
752 762 1.005867 TTCGGCTACACCAACGACC 60.006 57.895 0.00 0.00 39.03 4.79
753 763 1.746322 TTCGGCTACACCAACGACCA 61.746 55.000 0.00 0.00 39.03 4.02
754 764 1.079405 CGGCTACACCAACGACCAT 60.079 57.895 0.00 0.00 39.03 3.55
755 765 0.173935 CGGCTACACCAACGACCATA 59.826 55.000 0.00 0.00 39.03 2.74
756 766 1.202486 CGGCTACACCAACGACCATAT 60.202 52.381 0.00 0.00 39.03 1.78
757 767 2.480845 GGCTACACCAACGACCATATC 58.519 52.381 0.00 0.00 38.86 1.63
763 773 2.030457 CACCAACGACCATATCTTTCGC 59.970 50.000 0.00 0.00 36.18 4.70
771 781 4.681942 CGACCATATCTTTCGCCTCTTTAG 59.318 45.833 0.00 0.00 0.00 1.85
778 788 0.673644 TTCGCCTCTTTAGTGCTGCC 60.674 55.000 0.00 0.00 0.00 4.85
802 812 6.765512 CCATGGTTCTTGTTTTAATTTGGTGT 59.234 34.615 2.57 0.00 0.00 4.16
818 828 4.032960 TGGTGTTCCTGTAATGCTTGAT 57.967 40.909 0.00 0.00 34.23 2.57
820 830 4.009675 GGTGTTCCTGTAATGCTTGATCA 58.990 43.478 0.00 0.00 0.00 2.92
828 838 6.875726 TCCTGTAATGCTTGATCATATGCTAC 59.124 38.462 14.15 10.59 0.00 3.58
829 839 6.093219 CCTGTAATGCTTGATCATATGCTACC 59.907 42.308 14.15 4.23 0.00 3.18
839 849 5.928264 TGATCATATGCTACCGTGATTTGAG 59.072 40.000 0.00 0.00 31.86 3.02
845 855 4.827692 TGCTACCGTGATTTGAGTTATGT 58.172 39.130 0.00 0.00 0.00 2.29
863 873 6.882678 AGTTATGTAATGGTGGTTGAACCTAC 59.117 38.462 16.33 11.50 41.16 3.18
873 883 4.516321 GTGGTTGAACCTACGTAAATTGGT 59.484 41.667 16.33 0.00 39.58 3.67
874 884 5.700373 GTGGTTGAACCTACGTAAATTGGTA 59.300 40.000 16.33 0.00 39.58 3.25
875 885 5.933463 TGGTTGAACCTACGTAAATTGGTAG 59.067 40.000 16.33 5.16 39.58 3.18
890 901 4.305539 TTGGTAGGCATGATGGATATGG 57.694 45.455 0.00 0.00 0.00 2.74
912 923 5.105392 TGGAACATGTGATTGCCTATTTTCC 60.105 40.000 0.00 0.00 32.60 3.13
982 993 2.295909 ACAACAACAACAAGTGTGCTGT 59.704 40.909 0.00 0.00 40.60 4.40
985 996 2.556189 ACAACAACAAGTGTGCTGTTCA 59.444 40.909 0.00 0.00 41.11 3.18
1049 1061 2.163010 CCAGCTCACATGCTTTAACTGG 59.837 50.000 0.00 0.00 41.98 4.00
1056 1068 2.037121 ACATGCTTTAACTGGGTTTGGC 59.963 45.455 0.00 0.00 0.00 4.52
1059 1071 1.601914 GCTTTAACTGGGTTTGGCACG 60.602 52.381 0.00 0.00 0.00 5.34
1061 1073 0.824182 TTAACTGGGTTTGGCACGGG 60.824 55.000 0.00 0.00 0.00 5.28
1106 1137 0.250295 TAGCCATGCCGTAATGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
1107 1138 1.823470 GCCATGCCGTAATGCTCCA 60.823 57.895 0.00 0.00 0.00 3.86
1108 1139 1.174712 GCCATGCCGTAATGCTCCAT 61.175 55.000 0.00 0.00 0.00 3.41
1109 1140 1.321474 CCATGCCGTAATGCTCCATT 58.679 50.000 0.00 0.00 37.80 3.16
1110 1141 1.682854 CCATGCCGTAATGCTCCATTT 59.317 47.619 0.00 0.00 35.54 2.32
1111 1142 2.101249 CCATGCCGTAATGCTCCATTTT 59.899 45.455 0.00 0.00 35.54 1.82
1112 1143 3.317711 CCATGCCGTAATGCTCCATTTTA 59.682 43.478 0.00 0.00 35.54 1.52
1113 1144 4.202101 CCATGCCGTAATGCTCCATTTTAA 60.202 41.667 0.00 0.00 35.54 1.52
1114 1145 5.347342 CATGCCGTAATGCTCCATTTTAAA 58.653 37.500 0.00 0.00 35.54 1.52
1115 1146 4.992688 TGCCGTAATGCTCCATTTTAAAG 58.007 39.130 0.00 0.00 35.54 1.85
1116 1147 4.702612 TGCCGTAATGCTCCATTTTAAAGA 59.297 37.500 0.00 0.00 35.54 2.52
1117 1148 5.184096 TGCCGTAATGCTCCATTTTAAAGAA 59.816 36.000 0.00 0.00 35.54 2.52
1118 1149 6.096695 GCCGTAATGCTCCATTTTAAAGAAA 58.903 36.000 0.00 0.00 35.54 2.52
1119 1150 6.588373 GCCGTAATGCTCCATTTTAAAGAAAA 59.412 34.615 0.00 0.00 38.87 2.29
1150 1181 3.203716 GGGTTAATTAAGTCGGGCTCTG 58.796 50.000 0.00 0.00 0.00 3.35
1159 1190 4.821589 CGGGCTCTGTTCCTCCGC 62.822 72.222 0.00 0.00 34.17 5.54
1163 1194 1.516603 GCTCTGTTCCTCCGCGTAC 60.517 63.158 4.92 0.00 0.00 3.67
1164 1195 1.880894 CTCTGTTCCTCCGCGTACA 59.119 57.895 4.92 0.23 0.00 2.90
1165 1196 0.456221 CTCTGTTCCTCCGCGTACAT 59.544 55.000 4.92 0.00 0.00 2.29
1166 1197 0.172578 TCTGTTCCTCCGCGTACATG 59.827 55.000 4.92 0.00 0.00 3.21
1167 1198 0.172578 CTGTTCCTCCGCGTACATGA 59.827 55.000 4.92 0.00 0.00 3.07
1168 1199 0.172578 TGTTCCTCCGCGTACATGAG 59.827 55.000 4.92 3.61 0.00 2.90
1196 1227 3.408634 GTGTGGTGCCTACAACTTGTAT 58.591 45.455 2.02 0.00 33.30 2.29
1198 1229 3.071747 TGTGGTGCCTACAACTTGTATCA 59.928 43.478 2.02 1.91 33.30 2.15
1201 1232 5.523916 GTGGTGCCTACAACTTGTATCATAG 59.476 44.000 2.02 0.00 33.30 2.23
1212 1251 7.124298 ACAACTTGTATCATAGTAGCAAGGAGA 59.876 37.037 0.00 0.00 40.35 3.71
1223 1262 5.983540 AGTAGCAAGGAGAAAAATCGATCT 58.016 37.500 0.00 0.00 0.00 2.75
1237 1276 7.698836 AAAATCGATCTCCACAAAAAGTTTG 57.301 32.000 0.00 0.00 0.00 2.93
1253 1292 1.126079 TTTGTCGTTCGAGAGTTCGC 58.874 50.000 0.00 0.00 46.28 4.70
1260 1299 1.257155 GTTCGAGAGTTCGCACGTTTT 59.743 47.619 0.00 0.00 46.28 2.43
1270 1357 1.525197 TCGCACGTTTTGAGACATGAC 59.475 47.619 0.00 0.00 0.00 3.06
1280 1367 2.942641 AGACATGACGACCGTCTCA 58.057 52.632 21.01 5.39 44.80 3.27
1284 1371 2.156917 ACATGACGACCGTCTCACTTA 58.843 47.619 21.01 2.75 44.80 2.24
1290 1377 2.555325 ACGACCGTCTCACTTATTGTCA 59.445 45.455 0.00 0.00 0.00 3.58
1291 1378 3.192844 ACGACCGTCTCACTTATTGTCAT 59.807 43.478 0.00 0.00 0.00 3.06
1823 1928 2.418976 CGACAACCTCATCGTCTACTCA 59.581 50.000 0.00 0.00 33.63 3.41
2114 2339 1.007734 TGACTTCGTGGACGTGCTC 60.008 57.895 8.99 3.45 40.80 4.26
2119 2348 0.388134 TTCGTGGACGTGCTCTTAGC 60.388 55.000 8.99 0.00 38.93 3.09
2126 2358 2.456119 CGTGCTCTTAGCCGCCAAG 61.456 63.158 0.00 0.00 41.51 3.61
2540 2790 2.572104 GAGGTTCTTGGAGTACACCCAT 59.428 50.000 6.89 0.00 33.04 4.00
2624 2880 2.045438 TTCGCCATGCCGTCCAAT 60.045 55.556 0.00 0.00 0.00 3.16
2804 3060 3.916405 GAGAAAAGCGTCTCTACATGC 57.084 47.619 7.59 0.00 40.83 4.06
2805 3061 3.516615 GAGAAAAGCGTCTCTACATGCT 58.483 45.455 7.59 0.00 40.83 3.79
2893 3155 6.134535 TGTAGTACCAAGATTCCCAATGTT 57.865 37.500 0.00 0.00 0.00 2.71
2895 3157 7.867921 TGTAGTACCAAGATTCCCAATGTTAT 58.132 34.615 0.00 0.00 0.00 1.89
2918 3180 4.566545 TGAGATGCGTGTTGACAAATTT 57.433 36.364 0.00 0.00 0.00 1.82
3003 3265 1.367346 TCAAACTGGGACATGGCCTA 58.633 50.000 19.55 11.46 38.20 3.93
3012 3274 3.177228 GGGACATGGCCTATCAGTATCT 58.823 50.000 19.55 0.00 0.00 1.98
3163 5035 1.707989 TGTGTTGGGCAATCTTAGGGA 59.292 47.619 0.00 0.00 0.00 4.20
3164 5036 2.109128 TGTGTTGGGCAATCTTAGGGAA 59.891 45.455 0.00 0.00 0.00 3.97
3165 5037 2.755103 GTGTTGGGCAATCTTAGGGAAG 59.245 50.000 0.00 0.00 0.00 3.46
3166 5038 1.751351 GTTGGGCAATCTTAGGGAAGC 59.249 52.381 0.00 0.00 32.21 3.86
3167 5039 0.998928 TGGGCAATCTTAGGGAAGCA 59.001 50.000 0.00 0.00 32.87 3.91
3168 5040 1.340991 TGGGCAATCTTAGGGAAGCAC 60.341 52.381 0.00 0.00 34.44 4.40
3169 5041 1.340991 GGGCAATCTTAGGGAAGCACA 60.341 52.381 0.00 0.00 34.16 4.57
3170 5042 2.446435 GGCAATCTTAGGGAAGCACAA 58.554 47.619 0.00 0.00 32.87 3.33
3171 5043 3.026694 GGCAATCTTAGGGAAGCACAAT 58.973 45.455 0.00 0.00 32.87 2.71
3172 5044 3.448660 GGCAATCTTAGGGAAGCACAATT 59.551 43.478 0.00 0.00 32.87 2.32
3173 5045 4.081476 GGCAATCTTAGGGAAGCACAATTT 60.081 41.667 0.00 0.00 32.87 1.82
3174 5046 5.482006 GCAATCTTAGGGAAGCACAATTTT 58.518 37.500 0.00 0.00 32.21 1.82
3175 5047 5.934043 GCAATCTTAGGGAAGCACAATTTTT 59.066 36.000 0.00 0.00 32.21 1.94
3176 5048 7.096551 GCAATCTTAGGGAAGCACAATTTTTA 58.903 34.615 0.00 0.00 32.21 1.52
3177 5049 7.765819 GCAATCTTAGGGAAGCACAATTTTTAT 59.234 33.333 0.00 0.00 32.21 1.40
3178 5050 9.090692 CAATCTTAGGGAAGCACAATTTTTATG 57.909 33.333 0.00 0.00 32.21 1.90
3179 5051 8.593945 ATCTTAGGGAAGCACAATTTTTATGA 57.406 30.769 0.00 0.00 32.21 2.15
3215 5087 7.065324 TGGCCACAGTAGAAAAATAATTCGTAG 59.935 37.037 0.00 0.00 34.46 3.51
3216 5088 6.905609 GCCACAGTAGAAAAATAATTCGTAGC 59.094 38.462 0.00 0.00 34.46 3.58
3318 5190 9.917129 TGTTTCAACTACATCTCGTAATCTAAA 57.083 29.630 0.00 0.00 0.00 1.85
3333 5205 7.924412 TCGTAATCTAAAGCATAACTTGGTAGG 59.076 37.037 0.00 0.00 39.09 3.18
3349 5221 7.985476 ACTTGGTAGGAAAATAATTCGATGTG 58.015 34.615 0.00 0.00 0.00 3.21
3435 5307 6.529829 TGAATTAAAAATGCACGCTACCAATC 59.470 34.615 0.00 0.00 0.00 2.67
3447 5319 5.986135 CACGCTACCAATCTAGCTAGAATTT 59.014 40.000 26.62 14.91 37.57 1.82
3505 5377 8.686334 ACTTGATCTCAACAAACAAATAACACT 58.314 29.630 0.00 0.00 0.00 3.55
3532 5404 5.791367 AATCATCACACATCTCGAACAAG 57.209 39.130 0.00 0.00 0.00 3.16
3558 5430 4.870426 ACACTTCGTAATCATCACACATCC 59.130 41.667 0.00 0.00 0.00 3.51
3559 5431 4.271049 CACTTCGTAATCATCACACATCCC 59.729 45.833 0.00 0.00 0.00 3.85
3573 5445 2.996621 CACATCCCGAGAGAAAACACTC 59.003 50.000 0.00 0.00 37.19 3.51
3690 5563 7.750229 ATTGCAACATATCAGGTGTATTAGG 57.250 36.000 0.00 0.00 0.00 2.69
3695 5568 8.129211 GCAACATATCAGGTGTATTAGGTTTTC 58.871 37.037 0.00 0.00 0.00 2.29
3704 5577 9.410556 CAGGTGTATTAGGTTTTCTGAAAAATG 57.589 33.333 16.47 0.00 36.77 2.32
4141 6054 9.541143 TGCACGAGATTGATATGTTTTTATAGA 57.459 29.630 0.00 0.00 0.00 1.98
4327 6253 5.638596 AATCAGACGACCCAATTTAAACC 57.361 39.130 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.140141 GCCCGCCATAGCTGCAAA 61.140 61.111 1.02 0.00 35.27 3.68
76 77 2.161012 CGGTAGAGTTACGTTCTGCTGA 59.839 50.000 6.78 0.00 36.21 4.26
115 116 1.612726 GCAGAAGAGGACATTGGCTGT 60.613 52.381 0.00 0.00 42.15 4.40
133 134 2.426024 GTGGTATCTGTAGTTCTCCGCA 59.574 50.000 0.00 0.00 0.00 5.69
205 206 8.671921 CCCATGTATCATAAATTGATGTCTAGC 58.328 37.037 2.59 0.00 44.90 3.42
261 262 1.468520 CAGTATGTGCTTTTCCCACGG 59.531 52.381 0.00 0.00 36.01 4.94
327 328 4.377897 GTGTTGCCAGTAAGACAGTAGTT 58.622 43.478 0.00 0.00 0.00 2.24
352 353 0.040692 TATCCGACGACATGCTACGC 60.041 55.000 0.00 0.00 0.00 4.42
353 354 2.242564 CATATCCGACGACATGCTACG 58.757 52.381 0.00 0.00 0.00 3.51
354 355 1.986378 GCATATCCGACGACATGCTAC 59.014 52.381 16.18 0.00 40.46 3.58
355 356 1.067846 GGCATATCCGACGACATGCTA 60.068 52.381 20.14 0.00 42.66 3.49
356 357 0.319900 GGCATATCCGACGACATGCT 60.320 55.000 20.14 0.00 42.66 3.79
403 405 4.531732 ACAAATGCTAACAACCAATCCCAT 59.468 37.500 0.00 0.00 0.00 4.00
410 412 7.721402 AGATACAAAACAAATGCTAACAACCA 58.279 30.769 0.00 0.00 0.00 3.67
411 413 8.487176 CAAGATACAAAACAAATGCTAACAACC 58.513 33.333 0.00 0.00 0.00 3.77
413 415 9.243637 GACAAGATACAAAACAAATGCTAACAA 57.756 29.630 0.00 0.00 0.00 2.83
414 416 7.865385 GGACAAGATACAAAACAAATGCTAACA 59.135 33.333 0.00 0.00 0.00 2.41
461 471 4.450976 TCATTGTCTCCAATCCCAATACG 58.549 43.478 0.00 0.00 39.28 3.06
515 525 7.383102 AGAACAATTTGACACTATGGTCATC 57.617 36.000 2.79 0.00 46.37 2.92
516 526 8.896744 CATAGAACAATTTGACACTATGGTCAT 58.103 33.333 20.42 0.00 46.37 3.06
521 531 8.400186 TCATGCATAGAACAATTTGACACTATG 58.600 33.333 22.00 22.00 39.67 2.23
529 539 9.146984 ACTTTTGATCATGCATAGAACAATTTG 57.853 29.630 16.50 13.18 29.69 2.32
530 540 9.362539 GACTTTTGATCATGCATAGAACAATTT 57.637 29.630 16.50 8.61 29.69 1.82
533 543 7.307694 GTGACTTTTGATCATGCATAGAACAA 58.692 34.615 0.00 8.14 0.00 2.83
542 552 3.084039 TCCAGGTGACTTTTGATCATGC 58.916 45.455 0.00 0.00 40.21 4.06
550 560 3.714798 TCCTACTGTTCCAGGTGACTTTT 59.285 43.478 0.00 0.00 40.21 2.27
594 604 7.986320 TGGACAAGATCATGAACAAAACAATTT 59.014 29.630 4.68 0.00 0.00 1.82
595 605 7.499292 TGGACAAGATCATGAACAAAACAATT 58.501 30.769 4.68 0.00 0.00 2.32
596 606 7.053316 TGGACAAGATCATGAACAAAACAAT 57.947 32.000 4.68 0.00 0.00 2.71
597 607 6.462552 TGGACAAGATCATGAACAAAACAA 57.537 33.333 4.68 0.00 0.00 2.83
598 608 6.462552 TTGGACAAGATCATGAACAAAACA 57.537 33.333 4.68 0.00 0.00 2.83
599 609 9.643693 AATATTGGACAAGATCATGAACAAAAC 57.356 29.630 4.68 0.00 0.00 2.43
601 611 9.859427 GAAATATTGGACAAGATCATGAACAAA 57.141 29.630 4.68 0.00 0.00 2.83
602 612 9.022884 TGAAATATTGGACAAGATCATGAACAA 57.977 29.630 4.68 9.28 0.00 2.83
603 613 8.461222 GTGAAATATTGGACAAGATCATGAACA 58.539 33.333 4.68 0.33 0.00 3.18
604 614 8.461222 TGTGAAATATTGGACAAGATCATGAAC 58.539 33.333 4.68 0.00 0.00 3.18
605 615 8.461222 GTGTGAAATATTGGACAAGATCATGAA 58.539 33.333 4.68 0.00 0.00 2.57
606 616 7.201635 CGTGTGAAATATTGGACAAGATCATGA 60.202 37.037 4.68 0.00 0.00 3.07
607 617 6.908820 CGTGTGAAATATTGGACAAGATCATG 59.091 38.462 0.00 0.00 0.00 3.07
608 618 6.823182 TCGTGTGAAATATTGGACAAGATCAT 59.177 34.615 10.00 0.00 0.00 2.45
609 619 6.092122 GTCGTGTGAAATATTGGACAAGATCA 59.908 38.462 14.54 0.26 31.14 2.92
610 620 6.313905 AGTCGTGTGAAATATTGGACAAGATC 59.686 38.462 14.54 10.42 31.14 2.75
611 621 6.092670 CAGTCGTGTGAAATATTGGACAAGAT 59.907 38.462 14.54 0.00 31.14 2.40
612 622 5.408299 CAGTCGTGTGAAATATTGGACAAGA 59.592 40.000 10.00 10.00 0.00 3.02
613 623 5.621422 CAGTCGTGTGAAATATTGGACAAG 58.379 41.667 2.21 4.65 0.00 3.16
614 624 4.083537 GCAGTCGTGTGAAATATTGGACAA 60.084 41.667 2.21 0.00 0.00 3.18
615 625 3.435327 GCAGTCGTGTGAAATATTGGACA 59.565 43.478 0.00 0.00 0.00 4.02
616 626 3.684788 AGCAGTCGTGTGAAATATTGGAC 59.315 43.478 0.00 0.00 0.00 4.02
617 627 3.937814 AGCAGTCGTGTGAAATATTGGA 58.062 40.909 0.00 0.00 0.00 3.53
618 628 5.991328 ATAGCAGTCGTGTGAAATATTGG 57.009 39.130 0.00 0.00 0.00 3.16
619 629 8.764287 TCATTATAGCAGTCGTGTGAAATATTG 58.236 33.333 0.00 0.00 0.00 1.90
620 630 8.887036 TCATTATAGCAGTCGTGTGAAATATT 57.113 30.769 0.00 0.00 0.00 1.28
621 631 8.765219 GTTCATTATAGCAGTCGTGTGAAATAT 58.235 33.333 0.00 0.00 0.00 1.28
622 632 7.979537 AGTTCATTATAGCAGTCGTGTGAAATA 59.020 33.333 0.00 0.00 0.00 1.40
623 633 6.818644 AGTTCATTATAGCAGTCGTGTGAAAT 59.181 34.615 0.00 0.00 0.00 2.17
624 634 6.163476 AGTTCATTATAGCAGTCGTGTGAAA 58.837 36.000 0.00 0.00 0.00 2.69
625 635 5.720202 AGTTCATTATAGCAGTCGTGTGAA 58.280 37.500 0.00 0.00 0.00 3.18
626 636 5.324784 AGTTCATTATAGCAGTCGTGTGA 57.675 39.130 0.00 0.00 0.00 3.58
627 637 6.495706 TCTAGTTCATTATAGCAGTCGTGTG 58.504 40.000 0.00 0.00 0.00 3.82
628 638 6.694877 TCTAGTTCATTATAGCAGTCGTGT 57.305 37.500 0.00 0.00 0.00 4.49
629 639 7.197017 ACTTCTAGTTCATTATAGCAGTCGTG 58.803 38.462 0.00 0.00 0.00 4.35
630 640 7.283580 AGACTTCTAGTTCATTATAGCAGTCGT 59.716 37.037 6.44 0.00 43.04 4.34
631 641 7.644490 AGACTTCTAGTTCATTATAGCAGTCG 58.356 38.462 6.44 0.00 43.04 4.18
632 642 9.458374 GAAGACTTCTAGTTCATTATAGCAGTC 57.542 37.037 8.00 4.51 40.44 3.51
633 643 8.417884 GGAAGACTTCTAGTTCATTATAGCAGT 58.582 37.037 14.72 0.00 29.78 4.40
634 644 8.637986 AGGAAGACTTCTAGTTCATTATAGCAG 58.362 37.037 14.72 0.00 0.00 4.24
635 645 8.540507 AGGAAGACTTCTAGTTCATTATAGCA 57.459 34.615 14.72 0.00 0.00 3.49
636 646 8.634444 TGAGGAAGACTTCTAGTTCATTATAGC 58.366 37.037 14.72 0.00 0.00 2.97
639 649 9.261035 TCTTGAGGAAGACTTCTAGTTCATTAT 57.739 33.333 14.72 0.00 32.98 1.28
640 650 8.651589 TCTTGAGGAAGACTTCTAGTTCATTA 57.348 34.615 14.72 3.83 32.98 1.90
641 651 7.546250 TCTTGAGGAAGACTTCTAGTTCATT 57.454 36.000 14.72 0.00 32.98 2.57
642 652 7.398618 TCATCTTGAGGAAGACTTCTAGTTCAT 59.601 37.037 14.72 0.00 41.12 2.57
643 653 6.721668 TCATCTTGAGGAAGACTTCTAGTTCA 59.278 38.462 14.72 10.50 41.12 3.18
644 654 7.033185 GTCATCTTGAGGAAGACTTCTAGTTC 58.967 42.308 14.72 8.38 41.12 3.01
645 655 6.495181 TGTCATCTTGAGGAAGACTTCTAGTT 59.505 38.462 14.72 0.00 41.12 2.24
646 656 6.013379 TGTCATCTTGAGGAAGACTTCTAGT 58.987 40.000 14.72 0.49 41.12 2.57
647 657 6.522625 TGTCATCTTGAGGAAGACTTCTAG 57.477 41.667 14.72 7.70 41.12 2.43
648 658 6.721668 TCTTGTCATCTTGAGGAAGACTTCTA 59.278 38.462 14.72 0.00 41.12 2.10
649 659 5.541868 TCTTGTCATCTTGAGGAAGACTTCT 59.458 40.000 14.72 1.37 41.12 2.85
650 660 5.788450 TCTTGTCATCTTGAGGAAGACTTC 58.212 41.667 6.66 6.66 41.12 3.01
651 661 5.279910 CCTCTTGTCATCTTGAGGAAGACTT 60.280 44.000 1.83 0.00 46.53 3.01
652 662 4.222588 CCTCTTGTCATCTTGAGGAAGACT 59.777 45.833 1.83 0.00 46.53 3.24
653 663 4.020662 ACCTCTTGTCATCTTGAGGAAGAC 60.021 45.833 13.91 0.00 46.53 3.01
654 664 4.163427 ACCTCTTGTCATCTTGAGGAAGA 58.837 43.478 13.91 0.00 46.53 2.87
655 665 4.550076 ACCTCTTGTCATCTTGAGGAAG 57.450 45.455 13.91 0.00 46.53 3.46
656 666 4.103153 ACAACCTCTTGTCATCTTGAGGAA 59.897 41.667 13.91 0.00 46.53 3.36
657 667 3.648067 ACAACCTCTTGTCATCTTGAGGA 59.352 43.478 13.91 0.00 46.53 3.71
659 669 5.541845 TGTACAACCTCTTGTCATCTTGAG 58.458 41.667 0.00 0.00 41.15 3.02
660 670 5.545063 TGTACAACCTCTTGTCATCTTGA 57.455 39.130 0.00 0.00 41.15 3.02
661 671 6.618287 TTTGTACAACCTCTTGTCATCTTG 57.382 37.500 8.07 0.00 41.15 3.02
662 672 6.828785 ACTTTTGTACAACCTCTTGTCATCTT 59.171 34.615 8.07 0.00 41.15 2.40
663 673 6.357367 ACTTTTGTACAACCTCTTGTCATCT 58.643 36.000 8.07 0.00 41.15 2.90
664 674 6.619801 ACTTTTGTACAACCTCTTGTCATC 57.380 37.500 8.07 0.00 41.15 2.92
665 675 8.567948 CATAACTTTTGTACAACCTCTTGTCAT 58.432 33.333 8.07 0.00 41.15 3.06
666 676 7.468084 GCATAACTTTTGTACAACCTCTTGTCA 60.468 37.037 8.07 0.00 41.15 3.58
667 677 6.856426 GCATAACTTTTGTACAACCTCTTGTC 59.144 38.462 8.07 0.00 41.15 3.18
668 678 6.320164 TGCATAACTTTTGTACAACCTCTTGT 59.680 34.615 8.07 0.00 43.39 3.16
669 679 6.636850 GTGCATAACTTTTGTACAACCTCTTG 59.363 38.462 8.07 3.82 31.04 3.02
670 680 6.512741 CGTGCATAACTTTTGTACAACCTCTT 60.513 38.462 8.07 0.43 31.04 2.85
671 681 5.049680 CGTGCATAACTTTTGTACAACCTCT 60.050 40.000 8.07 0.00 31.04 3.69
672 682 5.144359 CGTGCATAACTTTTGTACAACCTC 58.856 41.667 8.07 0.00 31.04 3.85
673 683 4.555906 GCGTGCATAACTTTTGTACAACCT 60.556 41.667 8.07 0.00 31.04 3.50
674 684 3.666797 GCGTGCATAACTTTTGTACAACC 59.333 43.478 8.07 0.00 31.04 3.77
675 685 3.666797 GGCGTGCATAACTTTTGTACAAC 59.333 43.478 8.07 0.00 31.04 3.32
676 686 3.566322 AGGCGTGCATAACTTTTGTACAA 59.434 39.130 3.59 3.59 31.04 2.41
677 687 3.142951 AGGCGTGCATAACTTTTGTACA 58.857 40.909 0.00 0.00 31.04 2.90
678 688 3.824414 AGGCGTGCATAACTTTTGTAC 57.176 42.857 0.00 0.00 0.00 2.90
679 689 4.541779 CAAAGGCGTGCATAACTTTTGTA 58.458 39.130 9.00 0.00 31.31 2.41
680 690 3.380142 CAAAGGCGTGCATAACTTTTGT 58.620 40.909 9.00 0.00 31.31 2.83
681 691 2.730928 CCAAAGGCGTGCATAACTTTTG 59.269 45.455 11.65 11.65 31.31 2.44
682 692 2.866065 GCCAAAGGCGTGCATAACTTTT 60.866 45.455 9.00 0.22 39.62 2.27
683 693 1.336795 GCCAAAGGCGTGCATAACTTT 60.337 47.619 0.00 0.00 39.62 2.66
684 694 0.243636 GCCAAAGGCGTGCATAACTT 59.756 50.000 0.00 0.00 39.62 2.66
685 695 1.883021 GCCAAAGGCGTGCATAACT 59.117 52.632 0.00 0.00 39.62 2.24
686 696 4.476361 GCCAAAGGCGTGCATAAC 57.524 55.556 0.00 0.00 39.62 1.89
696 706 1.000521 TGCTCCTCCATGCCAAAGG 60.001 57.895 0.00 0.00 0.00 3.11
697 707 0.609957 TGTGCTCCTCCATGCCAAAG 60.610 55.000 0.00 0.00 0.00 2.77
698 708 0.895100 GTGTGCTCCTCCATGCCAAA 60.895 55.000 0.00 0.00 0.00 3.28
699 709 1.303561 GTGTGCTCCTCCATGCCAA 60.304 57.895 0.00 0.00 0.00 4.52
700 710 2.066700 TTGTGTGCTCCTCCATGCCA 62.067 55.000 0.00 0.00 0.00 4.92
701 711 0.682209 ATTGTGTGCTCCTCCATGCC 60.682 55.000 0.00 0.00 0.00 4.40
702 712 1.672881 GTATTGTGTGCTCCTCCATGC 59.327 52.381 0.00 0.00 0.00 4.06
703 713 1.935873 CGTATTGTGTGCTCCTCCATG 59.064 52.381 0.00 0.00 0.00 3.66
704 714 1.134401 CCGTATTGTGTGCTCCTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
705 715 0.249120 CCGTATTGTGTGCTCCTCCA 59.751 55.000 0.00 0.00 0.00 3.86
706 716 0.462047 CCCGTATTGTGTGCTCCTCC 60.462 60.000 0.00 0.00 0.00 4.30
707 717 1.090052 GCCCGTATTGTGTGCTCCTC 61.090 60.000 0.00 0.00 0.00 3.71
708 718 1.078426 GCCCGTATTGTGTGCTCCT 60.078 57.895 0.00 0.00 0.00 3.69
709 719 0.748005 ATGCCCGTATTGTGTGCTCC 60.748 55.000 0.00 0.00 0.00 4.70
710 720 1.064060 GAATGCCCGTATTGTGTGCTC 59.936 52.381 0.00 0.00 0.00 4.26
711 721 1.094785 GAATGCCCGTATTGTGTGCT 58.905 50.000 0.00 0.00 0.00 4.40
712 722 0.808125 TGAATGCCCGTATTGTGTGC 59.192 50.000 0.00 0.00 0.00 4.57
713 723 2.487762 AGTTGAATGCCCGTATTGTGTG 59.512 45.455 0.00 0.00 0.00 3.82
714 724 2.790433 AGTTGAATGCCCGTATTGTGT 58.210 42.857 0.00 0.00 0.00 3.72
715 725 3.727673 CGAAGTTGAATGCCCGTATTGTG 60.728 47.826 0.00 0.00 0.00 3.33
716 726 2.418628 CGAAGTTGAATGCCCGTATTGT 59.581 45.455 0.00 0.00 0.00 2.71
717 727 2.223249 CCGAAGTTGAATGCCCGTATTG 60.223 50.000 0.00 0.00 0.00 1.90
718 728 2.014128 CCGAAGTTGAATGCCCGTATT 58.986 47.619 0.00 0.00 0.00 1.89
719 729 1.663695 CCGAAGTTGAATGCCCGTAT 58.336 50.000 0.00 0.00 0.00 3.06
720 730 1.022451 GCCGAAGTTGAATGCCCGTA 61.022 55.000 0.00 0.00 0.00 4.02
721 731 2.332654 GCCGAAGTTGAATGCCCGT 61.333 57.895 0.00 0.00 0.00 5.28
722 732 0.742990 TAGCCGAAGTTGAATGCCCG 60.743 55.000 0.00 0.00 0.00 6.13
723 733 0.733150 GTAGCCGAAGTTGAATGCCC 59.267 55.000 0.00 0.00 0.00 5.36
724 734 1.130561 GTGTAGCCGAAGTTGAATGCC 59.869 52.381 0.00 0.00 0.00 4.40
725 735 1.130561 GGTGTAGCCGAAGTTGAATGC 59.869 52.381 0.00 0.00 0.00 3.56
726 736 2.422597 TGGTGTAGCCGAAGTTGAATG 58.577 47.619 0.00 0.00 41.21 2.67
727 737 2.812011 GTTGGTGTAGCCGAAGTTGAAT 59.188 45.455 0.00 0.00 41.21 2.57
728 738 2.215196 GTTGGTGTAGCCGAAGTTGAA 58.785 47.619 0.00 0.00 41.21 2.69
729 739 1.870580 CGTTGGTGTAGCCGAAGTTGA 60.871 52.381 0.00 0.00 41.21 3.18
730 740 0.511221 CGTTGGTGTAGCCGAAGTTG 59.489 55.000 0.00 0.00 41.21 3.16
731 741 0.390124 TCGTTGGTGTAGCCGAAGTT 59.610 50.000 0.00 0.00 41.21 2.66
732 742 0.319297 GTCGTTGGTGTAGCCGAAGT 60.319 55.000 0.00 0.00 41.21 3.01
733 743 1.012486 GGTCGTTGGTGTAGCCGAAG 61.012 60.000 0.00 0.00 41.21 3.79
734 744 1.005867 GGTCGTTGGTGTAGCCGAA 60.006 57.895 0.00 0.00 41.21 4.30
735 745 1.537814 ATGGTCGTTGGTGTAGCCGA 61.538 55.000 0.00 0.00 41.21 5.54
736 746 0.173935 TATGGTCGTTGGTGTAGCCG 59.826 55.000 0.00 0.00 41.21 5.52
737 747 2.102588 AGATATGGTCGTTGGTGTAGCC 59.897 50.000 0.00 0.00 37.90 3.93
738 748 3.454371 AGATATGGTCGTTGGTGTAGC 57.546 47.619 0.00 0.00 0.00 3.58
739 749 4.503007 CGAAAGATATGGTCGTTGGTGTAG 59.497 45.833 0.00 0.00 0.00 2.74
740 750 4.426416 CGAAAGATATGGTCGTTGGTGTA 58.574 43.478 0.00 0.00 0.00 2.90
741 751 3.259064 CGAAAGATATGGTCGTTGGTGT 58.741 45.455 0.00 0.00 0.00 4.16
742 752 2.030457 GCGAAAGATATGGTCGTTGGTG 59.970 50.000 0.00 0.00 37.12 4.17
743 753 2.277084 GCGAAAGATATGGTCGTTGGT 58.723 47.619 0.00 0.00 37.12 3.67
744 754 1.597663 GGCGAAAGATATGGTCGTTGG 59.402 52.381 0.00 0.00 37.12 3.77
745 755 2.540101 GAGGCGAAAGATATGGTCGTTG 59.460 50.000 0.00 0.00 37.12 4.10
746 756 2.431057 AGAGGCGAAAGATATGGTCGTT 59.569 45.455 0.00 0.00 37.12 3.85
747 757 2.032620 AGAGGCGAAAGATATGGTCGT 58.967 47.619 0.00 0.00 37.12 4.34
748 758 2.802787 AGAGGCGAAAGATATGGTCG 57.197 50.000 0.00 0.00 37.82 4.79
749 759 5.463724 CACTAAAGAGGCGAAAGATATGGTC 59.536 44.000 0.00 0.00 0.00 4.02
750 760 5.360591 CACTAAAGAGGCGAAAGATATGGT 58.639 41.667 0.00 0.00 0.00 3.55
751 761 4.212214 GCACTAAAGAGGCGAAAGATATGG 59.788 45.833 0.00 0.00 0.00 2.74
752 762 5.050499 CAGCACTAAAGAGGCGAAAGATATG 60.050 44.000 0.00 0.00 0.00 1.78
753 763 5.053145 CAGCACTAAAGAGGCGAAAGATAT 58.947 41.667 0.00 0.00 0.00 1.63
754 764 4.433615 CAGCACTAAAGAGGCGAAAGATA 58.566 43.478 0.00 0.00 0.00 1.98
755 765 3.265791 CAGCACTAAAGAGGCGAAAGAT 58.734 45.455 0.00 0.00 0.00 2.40
756 766 2.688507 CAGCACTAAAGAGGCGAAAGA 58.311 47.619 0.00 0.00 0.00 2.52
757 767 1.129437 GCAGCACTAAAGAGGCGAAAG 59.871 52.381 0.00 0.00 0.00 2.62
763 773 1.340405 ACCATGGCAGCACTAAAGAGG 60.340 52.381 13.04 0.00 0.00 3.69
771 781 0.675633 AACAAGAACCATGGCAGCAC 59.324 50.000 13.04 0.00 0.00 4.40
778 788 7.784633 ACACCAAATTAAAACAAGAACCATG 57.215 32.000 0.00 0.00 0.00 3.66
802 812 6.301486 AGCATATGATCAAGCATTACAGGAA 58.699 36.000 17.04 0.00 0.00 3.36
818 828 5.276461 ACTCAAATCACGGTAGCATATGA 57.724 39.130 6.97 0.00 0.00 2.15
820 830 7.217200 ACATAACTCAAATCACGGTAGCATAT 58.783 34.615 0.00 0.00 0.00 1.78
828 838 6.458206 CCACCATTACATAACTCAAATCACGG 60.458 42.308 0.00 0.00 0.00 4.94
829 839 6.093495 ACCACCATTACATAACTCAAATCACG 59.907 38.462 0.00 0.00 0.00 4.35
839 849 6.183360 CGTAGGTTCAACCACCATTACATAAC 60.183 42.308 9.90 0.00 41.95 1.89
845 855 5.480642 TTACGTAGGTTCAACCACCATTA 57.519 39.130 9.90 0.00 41.95 1.90
863 873 4.133820 TCCATCATGCCTACCAATTTACG 58.866 43.478 0.00 0.00 0.00 3.18
873 883 5.014438 ACATGTTCCATATCCATCATGCCTA 59.986 40.000 0.00 0.00 36.96 3.93
874 884 4.202641 ACATGTTCCATATCCATCATGCCT 60.203 41.667 0.00 0.00 36.96 4.75
875 885 4.082408 CACATGTTCCATATCCATCATGCC 60.082 45.833 0.00 0.00 36.96 4.40
890 901 5.964758 TGGAAAATAGGCAATCACATGTTC 58.035 37.500 0.00 0.00 0.00 3.18
956 967 5.986135 AGCACACTTGTTGTTGTTGTTTTTA 59.014 32.000 0.00 0.00 35.67 1.52
961 972 2.295909 ACAGCACACTTGTTGTTGTTGT 59.704 40.909 0.00 0.00 44.09 3.32
962 973 2.945278 ACAGCACACTTGTTGTTGTTG 58.055 42.857 0.00 0.00 44.09 3.33
968 979 4.919206 TGTAATGAACAGCACACTTGTTG 58.081 39.130 0.00 0.00 38.78 3.33
982 993 2.248280 ACCGTGTGCACTGTAATGAA 57.752 45.000 19.41 0.00 0.00 2.57
985 996 6.804770 TTTTAATACCGTGTGCACTGTAAT 57.195 33.333 19.41 11.92 35.28 1.89
1049 1061 2.983592 CTCCACCCGTGCCAAACC 60.984 66.667 0.00 0.00 0.00 3.27
1061 1073 2.550978 CATGGTATCGGTGAACTCCAC 58.449 52.381 0.00 0.00 44.95 4.02
1106 1137 6.073819 CCCCTGCGTTTCTTTTCTTTAAAATG 60.074 38.462 0.00 0.00 34.18 2.32
1107 1138 5.989168 CCCCTGCGTTTCTTTTCTTTAAAAT 59.011 36.000 0.00 0.00 34.18 1.82
1108 1139 5.105269 ACCCCTGCGTTTCTTTTCTTTAAAA 60.105 36.000 0.00 0.00 33.58 1.52
1109 1140 4.403113 ACCCCTGCGTTTCTTTTCTTTAAA 59.597 37.500 0.00 0.00 0.00 1.52
1110 1141 3.955551 ACCCCTGCGTTTCTTTTCTTTAA 59.044 39.130 0.00 0.00 0.00 1.52
1111 1142 3.558033 ACCCCTGCGTTTCTTTTCTTTA 58.442 40.909 0.00 0.00 0.00 1.85
1112 1143 2.384828 ACCCCTGCGTTTCTTTTCTTT 58.615 42.857 0.00 0.00 0.00 2.52
1113 1144 2.067365 ACCCCTGCGTTTCTTTTCTT 57.933 45.000 0.00 0.00 0.00 2.52
1114 1145 2.067365 AACCCCTGCGTTTCTTTTCT 57.933 45.000 0.00 0.00 0.00 2.52
1115 1146 3.994204 TTAACCCCTGCGTTTCTTTTC 57.006 42.857 0.00 0.00 0.00 2.29
1116 1147 4.948341 AATTAACCCCTGCGTTTCTTTT 57.052 36.364 0.00 0.00 0.00 2.27
1117 1148 5.537295 ACTTAATTAACCCCTGCGTTTCTTT 59.463 36.000 0.00 0.00 0.00 2.52
1118 1149 5.074804 ACTTAATTAACCCCTGCGTTTCTT 58.925 37.500 0.00 0.00 0.00 2.52
1119 1150 4.659115 ACTTAATTAACCCCTGCGTTTCT 58.341 39.130 0.00 0.00 0.00 2.52
1150 1181 1.146358 GCTCATGTACGCGGAGGAAC 61.146 60.000 12.47 0.66 0.00 3.62
1159 1190 0.390340 ACACCTGCAGCTCATGTACG 60.390 55.000 8.66 0.00 0.00 3.67
1163 1194 1.303074 ACCACACCTGCAGCTCATG 60.303 57.895 8.66 6.09 0.00 3.07
1164 1195 1.303074 CACCACACCTGCAGCTCAT 60.303 57.895 8.66 0.00 0.00 2.90
1165 1196 2.111669 CACCACACCTGCAGCTCA 59.888 61.111 8.66 0.00 0.00 4.26
1166 1197 3.360340 GCACCACACCTGCAGCTC 61.360 66.667 8.66 0.00 34.56 4.09
1167 1198 4.962836 GGCACCACACCTGCAGCT 62.963 66.667 8.66 0.00 36.27 4.24
1168 1199 3.551496 TAGGCACCACACCTGCAGC 62.551 63.158 8.66 0.00 38.26 5.25
1196 1227 6.873997 TCGATTTTTCTCCTTGCTACTATGA 58.126 36.000 0.00 0.00 0.00 2.15
1198 1229 7.731054 AGATCGATTTTTCTCCTTGCTACTAT 58.269 34.615 0.00 0.00 0.00 2.12
1201 1232 6.280537 GAGATCGATTTTTCTCCTTGCTAC 57.719 41.667 0.00 0.00 33.71 3.58
1212 1251 7.763985 ACAAACTTTTTGTGGAGATCGATTTTT 59.236 29.630 0.00 0.00 0.00 1.94
1223 1262 3.436015 TCGAACGACAAACTTTTTGTGGA 59.564 39.130 17.37 2.81 33.30 4.02
1225 1264 4.643953 TCTCGAACGACAAACTTTTTGTG 58.356 39.130 8.97 4.81 31.96 3.33
1253 1292 2.096909 GGTCGTCATGTCTCAAAACGTG 60.097 50.000 0.00 0.00 37.48 4.49
1260 1299 2.942641 AGACGGTCGTCATGTCTCA 58.057 52.632 22.81 0.00 46.76 3.27
1270 1357 3.211803 TGACAATAAGTGAGACGGTCG 57.788 47.619 1.89 0.00 0.00 4.79
1280 1367 5.106948 CGAGTTGAACAGCATGACAATAAGT 60.107 40.000 0.00 0.00 39.69 2.24
1284 1371 2.095567 GCGAGTTGAACAGCATGACAAT 60.096 45.455 10.16 0.00 39.69 2.71
1290 1377 0.250901 AAGGGCGAGTTGAACAGCAT 60.251 50.000 15.43 3.42 0.00 3.79
1291 1378 0.884704 GAAGGGCGAGTTGAACAGCA 60.885 55.000 15.43 0.00 0.00 4.41
1383 1476 2.049433 CGACGGAGGCAACGTTCT 60.049 61.111 0.00 0.00 45.68 3.01
1481 1574 1.516892 GTACATGACCGGGCCGTAA 59.483 57.895 26.32 10.20 0.00 3.18
1790 1895 0.531974 GGTTGTCGCTCAGGTTCACA 60.532 55.000 0.00 0.00 0.00 3.58
1823 1928 1.227380 GCGAGAGATGGCGGTGAAT 60.227 57.895 0.00 0.00 0.00 2.57
2114 2339 1.522580 GAGCTCCTTGGCGGCTAAG 60.523 63.158 18.04 18.04 36.37 2.18
2119 2348 4.069232 TGTCGAGCTCCTTGGCGG 62.069 66.667 8.47 0.00 37.29 6.13
2126 2358 2.504244 CCGTTCGTGTCGAGCTCC 60.504 66.667 8.47 0.00 37.14 4.70
2516 2766 2.094649 GGTGTACTCCAAGAACCTCTCG 60.095 54.545 9.12 0.00 0.00 4.04
2540 2790 1.761174 GAAGTCTTGCCCCACCTCA 59.239 57.895 0.00 0.00 0.00 3.86
2624 2880 3.150335 CTCGCTAGGGCCAGCTCA 61.150 66.667 20.55 9.92 39.51 4.26
2804 3060 7.311364 AGCTCGTACTACTTAGAAGAAGAAG 57.689 40.000 0.00 0.00 0.00 2.85
2805 3061 7.011295 GCTAGCTCGTACTACTTAGAAGAAGAA 59.989 40.741 7.70 0.00 0.00 2.52
2806 3062 6.479660 GCTAGCTCGTACTACTTAGAAGAAGA 59.520 42.308 7.70 0.00 0.00 2.87
2893 3155 5.681337 TTTGTCAACACGCATCTCAAATA 57.319 34.783 0.00 0.00 0.00 1.40
2895 3157 4.566545 ATTTGTCAACACGCATCTCAAA 57.433 36.364 0.00 0.00 0.00 2.69
3088 4956 8.026026 CGTATAGCTTCATATCATGTCTGACTT 58.974 37.037 9.51 0.00 33.22 3.01
3089 4957 7.362487 CCGTATAGCTTCATATCATGTCTGACT 60.362 40.741 9.51 0.00 33.22 3.41
3163 5035 7.551035 TTGTGCTTTCATAAAAATTGTGCTT 57.449 28.000 0.00 0.00 0.00 3.91
3164 5036 7.733402 ATTGTGCTTTCATAAAAATTGTGCT 57.267 28.000 0.00 0.00 0.00 4.40
3165 5037 7.324135 CCAATTGTGCTTTCATAAAAATTGTGC 59.676 33.333 4.43 0.00 0.00 4.57
3166 5038 7.324135 GCCAATTGTGCTTTCATAAAAATTGTG 59.676 33.333 4.43 0.00 0.00 3.33
3167 5039 7.361894 GCCAATTGTGCTTTCATAAAAATTGT 58.638 30.769 4.43 0.00 0.00 2.71
3168 5040 6.802834 GGCCAATTGTGCTTTCATAAAAATTG 59.197 34.615 15.53 0.00 0.00 2.32
3169 5041 6.489361 TGGCCAATTGTGCTTTCATAAAAATT 59.511 30.769 0.61 0.00 0.00 1.82
3170 5042 6.002704 TGGCCAATTGTGCTTTCATAAAAAT 58.997 32.000 0.61 0.00 0.00 1.82
3171 5043 5.238214 GTGGCCAATTGTGCTTTCATAAAAA 59.762 36.000 7.24 0.00 0.00 1.94
3172 5044 4.754114 GTGGCCAATTGTGCTTTCATAAAA 59.246 37.500 7.24 0.00 0.00 1.52
3173 5045 4.202295 TGTGGCCAATTGTGCTTTCATAAA 60.202 37.500 7.24 0.00 0.00 1.40
3174 5046 3.323115 TGTGGCCAATTGTGCTTTCATAA 59.677 39.130 7.24 0.00 0.00 1.90
3175 5047 2.896044 TGTGGCCAATTGTGCTTTCATA 59.104 40.909 7.24 4.73 0.00 2.15
3176 5048 1.693062 TGTGGCCAATTGTGCTTTCAT 59.307 42.857 7.24 0.00 0.00 2.57
3177 5049 1.068895 CTGTGGCCAATTGTGCTTTCA 59.931 47.619 7.24 0.00 0.00 2.69
3178 5050 1.069049 ACTGTGGCCAATTGTGCTTTC 59.931 47.619 7.24 0.00 0.00 2.62
3179 5051 1.122227 ACTGTGGCCAATTGTGCTTT 58.878 45.000 7.24 0.00 0.00 3.51
3215 5087 1.315257 AATCCAGCCACATGTTCCGC 61.315 55.000 0.00 0.00 0.00 5.54
3216 5088 0.452987 CAATCCAGCCACATGTTCCG 59.547 55.000 0.00 0.00 0.00 4.30
3247 5119 5.181433 ACTTCATCCTTTAGCGAGAAAAACC 59.819 40.000 0.00 0.00 0.00 3.27
3318 5190 8.621286 CGAATTATTTTCCTACCAAGTTATGCT 58.379 33.333 0.00 0.00 0.00 3.79
3333 5205 8.810427 ACATTTGCATCACATCGAATTATTTTC 58.190 29.630 0.00 0.00 0.00 2.29
3349 5221 2.617250 TCGCTTCACACATTTGCATC 57.383 45.000 0.00 0.00 0.00 3.91
3475 5347 7.572523 ATTTGTTTGTTGAGATCAAGTCAGA 57.427 32.000 0.00 0.00 36.39 3.27
3505 5377 5.835113 TCGAGATGTGTGATGATTACAGA 57.165 39.130 0.00 0.00 0.00 3.41
3532 5404 6.699895 TGTGTGATGATTACGAAGTGTTAC 57.300 37.500 0.00 0.00 45.73 2.50
3584 5456 2.105821 CCCCTTCTAGTTGGTGTTGACA 59.894 50.000 0.00 0.00 0.00 3.58
3669 5542 7.568199 AAACCTAATACACCTGATATGTTGC 57.432 36.000 0.00 0.00 0.00 4.17
3984 5883 4.397420 AGCACTTAACATGGAATCACACA 58.603 39.130 0.00 0.00 0.00 3.72
4211 6128 5.722172 AAGATCTCCCATTTGATTGAGGA 57.278 39.130 0.00 0.00 0.00 3.71
4327 6253 3.599343 TCACAATCAATCAAGGTCTCCG 58.401 45.455 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.