Multiple sequence alignment - TraesCS1D01G166100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G166100 chr1D 100.000 5063 0 0 1 5063 237150832 237145770 0.000000e+00 9350.0
1 TraesCS1D01G166100 chr1D 100.000 650 0 0 5332 5981 237145501 237144852 0.000000e+00 1201.0
2 TraesCS1D01G166100 chr1D 91.803 122 9 1 1740 1861 364255306 364255426 1.030000e-37 169.0
3 TraesCS1D01G166100 chr1D 88.889 72 8 0 1648 1719 339975497 339975426 8.260000e-14 89.8
4 TraesCS1D01G166100 chr1A 91.953 1106 69 13 3973 5063 308572773 308571673 0.000000e+00 1531.0
5 TraesCS1D01G166100 chr1A 86.100 1036 73 27 761 1747 308576322 308575309 0.000000e+00 1050.0
6 TraesCS1D01G166100 chr1A 97.117 555 16 0 5427 5981 308571633 308571079 0.000000e+00 937.0
7 TraesCS1D01G166100 chr1A 86.441 649 77 6 2309 2951 308574755 308574112 0.000000e+00 701.0
8 TraesCS1D01G166100 chr1A 84.870 694 63 18 4 669 273513281 273512602 0.000000e+00 662.0
9 TraesCS1D01G166100 chr1A 91.097 483 31 6 3462 3937 308573240 308572763 1.410000e-180 643.0
10 TraesCS1D01G166100 chr1A 93.427 213 11 2 3206 3417 308573455 308573245 4.500000e-81 313.0
11 TraesCS1D01G166100 chr1A 87.931 232 26 2 2951 3182 308573943 308573714 7.640000e-69 272.0
12 TraesCS1D01G166100 chr1A 78.539 219 42 4 3881 4096 279824788 279824572 8.080000e-29 139.0
13 TraesCS1D01G166100 chr1A 77.982 218 42 6 3883 4096 544197017 544196802 1.350000e-26 132.0
14 TraesCS1D01G166100 chr1A 93.976 83 4 1 688 769 308578052 308577970 2.260000e-24 124.0
15 TraesCS1D01G166100 chr1B 95.149 907 36 3 4165 5063 342647001 342647907 0.000000e+00 1424.0
16 TraesCS1D01G166100 chr1B 91.218 911 40 17 763 1641 342643465 342644367 0.000000e+00 1203.0
17 TraesCS1D01G166100 chr1B 85.857 1103 121 14 1860 2955 342644510 342645584 0.000000e+00 1140.0
18 TraesCS1D01G166100 chr1B 91.888 715 52 6 3464 4173 342646234 342646947 0.000000e+00 994.0
19 TraesCS1D01G166100 chr1B 95.772 544 14 1 5438 5981 342647921 342648455 0.000000e+00 869.0
20 TraesCS1D01G166100 chr1B 91.080 213 15 3 3206 3417 342646018 342646227 9.810000e-73 285.0
21 TraesCS1D01G166100 chr1B 89.623 106 11 0 1642 1747 342644407 342644512 1.050000e-27 135.0
22 TraesCS1D01G166100 chr1B 77.934 213 43 3 3881 4090 628010806 628011017 4.860000e-26 130.0
23 TraesCS1D01G166100 chr1B 83.621 116 19 0 520 635 342642992 342643107 6.340000e-20 110.0
24 TraesCS1D01G166100 chr5D 87.059 680 71 10 1 668 520253866 520253192 0.000000e+00 752.0
25 TraesCS1D01G166100 chr5D 92.261 491 35 2 1 488 400367142 400366652 0.000000e+00 693.0
26 TraesCS1D01G166100 chr5D 85.565 672 56 17 1 635 532239205 532239872 0.000000e+00 665.0
27 TraesCS1D01G166100 chr2D 92.073 492 33 5 1 488 186955169 186954680 0.000000e+00 688.0
28 TraesCS1D01G166100 chr2D 91.650 491 34 4 1 488 387480172 387480658 0.000000e+00 673.0
29 TraesCS1D01G166100 chr2D 91.598 488 33 5 1 485 353543809 353544291 0.000000e+00 667.0
30 TraesCS1D01G166100 chr2D 95.276 127 4 2 1741 1866 172575958 172575833 3.660000e-47 200.0
31 TraesCS1D01G166100 chr2D 94.068 118 7 0 1745 1862 38627606 38627489 4.760000e-41 180.0
32 TraesCS1D01G166100 chr7A 87.842 584 61 6 1 575 316540744 316541326 0.000000e+00 676.0
33 TraesCS1D01G166100 chr7A 78.505 214 41 5 3886 4096 570284259 570284048 1.050000e-27 135.0
34 TraesCS1D01G166100 chr3D 91.650 491 35 3 1 488 480356685 480356198 0.000000e+00 675.0
35 TraesCS1D01G166100 chr3D 91.446 491 36 4 1 488 281007142 281006655 0.000000e+00 669.0
36 TraesCS1D01G166100 chr3D 83.428 706 65 26 1 668 560950233 560949542 5.130000e-170 608.0
37 TraesCS1D01G166100 chr3D 96.190 105 4 0 5332 5436 606889384 606889280 7.970000e-39 172.0
38 TraesCS1D01G166100 chr4D 91.481 493 33 5 1 488 17032539 17033027 0.000000e+00 669.0
39 TraesCS1D01G166100 chr4D 86.702 376 42 6 1 372 310477578 310477949 1.550000e-110 411.0
40 TraesCS1D01G166100 chr4D 92.437 119 9 0 1744 1862 18207442 18207560 2.870000e-38 171.0
41 TraesCS1D01G166100 chr6D 83.190 696 82 18 1 669 434318982 434318295 6.630000e-169 604.0
42 TraesCS1D01G166100 chr6D 97.980 99 2 0 5332 5430 435974446 435974348 7.970000e-39 172.0
43 TraesCS1D01G166100 chr6D 97.030 101 3 0 5333 5433 343556274 343556374 2.870000e-38 171.0
44 TraesCS1D01G166100 chr3A 85.067 375 48 5 2 372 749571384 749571014 5.660000e-100 375.0
45 TraesCS1D01G166100 chr3A 82.609 414 66 6 4182 4593 265370315 265370724 1.580000e-95 361.0
46 TraesCS1D01G166100 chr3A 84.564 298 41 5 4298 4593 42681383 42681677 2.110000e-74 291.0
47 TraesCS1D01G166100 chr5A 97.115 104 3 0 5332 5435 113851939 113851836 6.160000e-40 176.0
48 TraesCS1D01G166100 chr5A 93.636 110 7 0 5332 5441 362173334 362173225 1.330000e-36 165.0
49 TraesCS1D01G166100 chr5A 77.622 143 17 12 5449 5590 707724121 707723993 8.310000e-09 73.1
50 TraesCS1D01G166100 chr5A 77.953 127 15 10 5449 5575 551483441 551483554 3.870000e-07 67.6
51 TraesCS1D01G166100 chr2B 92.683 123 8 1 1739 1861 723434228 723434349 6.160000e-40 176.0
52 TraesCS1D01G166100 chr2B 93.162 117 8 0 1745 1861 137340664 137340548 7.970000e-39 172.0
53 TraesCS1D01G166100 chr2B 90.323 124 12 0 1740 1863 578044889 578045012 4.800000e-36 163.0
54 TraesCS1D01G166100 chr4A 98.969 97 1 0 5333 5429 570990362 570990458 2.220000e-39 174.0
55 TraesCS1D01G166100 chr4A 92.373 118 9 0 1745 1862 544199437 544199320 1.030000e-37 169.0
56 TraesCS1D01G166100 chr4A 78.472 144 30 1 525 667 593831261 593831118 6.380000e-15 93.5
57 TraesCS1D01G166100 chr7D 97.980 99 2 0 5332 5430 615266707 615266609 7.970000e-39 172.0
58 TraesCS1D01G166100 chr7D 91.803 122 10 0 1744 1865 443163225 443163346 2.870000e-38 171.0
59 TraesCS1D01G166100 chr6A 97.059 102 3 0 5332 5433 499205108 499205007 7.970000e-39 172.0
60 TraesCS1D01G166100 chr6A 79.327 208 38 5 3886 4090 524364322 524364527 2.250000e-29 141.0
61 TraesCS1D01G166100 chr6A 78.082 219 41 6 3882 4096 550062686 550062471 1.350000e-26 132.0
62 TraesCS1D01G166100 chr6A 92.308 39 3 0 3413 3451 12076148 12076110 8.370000e-04 56.5
63 TraesCS1D01G166100 chr5B 95.283 106 4 1 5332 5437 281433795 281433899 3.710000e-37 167.0
64 TraesCS1D01G166100 chr7B 78.199 211 40 6 3882 4090 709523691 709523897 4.860000e-26 130.0
65 TraesCS1D01G166100 chrUn 80.588 170 27 6 2960 3125 96614875 96615042 6.290000e-25 126.0
66 TraesCS1D01G166100 chrUn 76.582 158 30 5 2971 3125 308772839 308772686 4.970000e-11 80.5
67 TraesCS1D01G166100 chrUn 76.582 158 30 5 2971 3125 308774440 308774593 4.970000e-11 80.5
68 TraesCS1D01G166100 chrUn 76.582 158 30 5 2971 3125 312196611 312196764 4.970000e-11 80.5
69 TraesCS1D01G166100 chrUn 76.582 158 30 5 2971 3125 327689537 327689384 4.970000e-11 80.5
70 TraesCS1D01G166100 chr2A 81.132 159 17 10 2965 3117 9204773 9204924 1.360000e-21 115.0
71 TraesCS1D01G166100 chr6B 80.667 150 24 5 2977 3123 659035898 659035751 1.760000e-20 111.0
72 TraesCS1D01G166100 chr3B 90.698 43 1 3 3401 3440 669947912 669947954 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G166100 chr1D 237144852 237150832 5980 True 5275.500 9350 100.00000 1 5981 2 chr1D.!!$R2 5980
1 TraesCS1D01G166100 chr1A 308571079 308578052 6973 True 696.375 1531 91.00525 688 5981 8 chr1A.!!$R4 5293
2 TraesCS1D01G166100 chr1A 273512602 273513281 679 True 662.000 662 84.87000 4 669 1 chr1A.!!$R1 665
3 TraesCS1D01G166100 chr1B 342642992 342648455 5463 False 770.000 1424 90.52600 520 5981 8 chr1B.!!$F2 5461
4 TraesCS1D01G166100 chr5D 520253192 520253866 674 True 752.000 752 87.05900 1 668 1 chr5D.!!$R2 667
5 TraesCS1D01G166100 chr5D 532239205 532239872 667 False 665.000 665 85.56500 1 635 1 chr5D.!!$F1 634
6 TraesCS1D01G166100 chr7A 316540744 316541326 582 False 676.000 676 87.84200 1 575 1 chr7A.!!$F1 574
7 TraesCS1D01G166100 chr3D 560949542 560950233 691 True 608.000 608 83.42800 1 668 1 chr3D.!!$R3 667
8 TraesCS1D01G166100 chr6D 434318295 434318982 687 True 604.000 604 83.19000 1 669 1 chr6D.!!$R1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 785 0.108945 GAAGAACGAATCGGACGGGT 60.109 55.000 7.80 0.00 34.93 5.28 F
945 2677 0.109597 CGTACGTACAGACCCACCAC 60.110 60.000 24.50 0.00 0.00 4.16 F
1857 3680 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
2472 4413 0.030092 CCCTATCTCCCTCCACCCAA 60.030 60.000 0.00 0.00 0.00 4.12 F
2532 4473 0.179018 GGCCACTGAAGAACACCACT 60.179 55.000 0.00 0.00 0.00 4.00 F
2766 4713 0.716666 GCGAAGAAAAGAGACCTCGC 59.283 55.000 0.00 0.00 38.15 5.03 F
2956 5072 1.075601 AAGGGGGAGATGACTTTGCA 58.924 50.000 0.00 0.00 0.00 4.08 F
4679 7118 1.745653 GCAGTTGCTCCCAAATAGACC 59.254 52.381 0.00 0.00 38.21 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 3661 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
2303 4150 0.036388 TGACGATTCTTCCCAGTGGC 60.036 55.000 2.61 0.0 0.00 5.01 R
2748 4695 1.336887 TGGCGAGGTCTCTTTTCTTCG 60.337 52.381 0.00 0.0 36.51 3.79 R
4395 6827 0.725686 CTGACATCAAAGCCGCAGAG 59.274 55.000 0.00 0.0 0.00 3.35 R
4554 6988 3.806949 AGGGTCAAGTATTTGGAAGCA 57.193 42.857 0.00 0.0 34.97 3.91 R
4650 7089 1.024271 GGAGCAACTGCAACAACTCA 58.976 50.000 4.22 0.0 45.16 3.41 R
4887 7328 1.059098 AGCCAATGAGTGTGTCCTCA 58.941 50.000 0.00 0.0 45.06 3.86 R
5928 8370 0.320771 GTGTGGAGACCTGCGTCATT 60.321 55.000 0.00 0.0 41.87 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 70 1.215647 GCTTCCACGTCCATCTCGT 59.784 57.895 0.00 0.00 42.33 4.18
69 72 0.526211 CTTCCACGTCCATCTCGTCA 59.474 55.000 0.00 0.00 39.55 4.35
129 132 1.164041 CCTCGTTGGTGAAAAGCCGT 61.164 55.000 0.00 0.00 0.00 5.68
147 150 1.000359 TGGGAGAGGCGTGAGATCA 60.000 57.895 0.00 0.00 0.00 2.92
199 202 0.757188 ATTCATCTCCCGACGAGGCT 60.757 55.000 0.00 0.00 39.30 4.58
338 341 2.403987 CTCGCGGACTCCACGTAG 59.596 66.667 6.13 0.00 0.00 3.51
372 376 1.810853 CAGCGCATCGACATGGTGA 60.811 57.895 11.47 0.00 0.00 4.02
432 436 2.782222 GGCGGCGGACAGAGTATGA 61.782 63.158 9.78 0.00 0.00 2.15
436 440 0.824759 GGCGGACAGAGTATGAAGGT 59.175 55.000 0.00 0.00 0.00 3.50
465 489 2.575125 TTAATAACGAGCGCCGGCCA 62.575 55.000 23.46 0.00 43.93 5.36
504 528 2.253513 GCTGGAGCGCTAAAACCAA 58.746 52.632 11.50 0.00 31.85 3.67
510 534 2.501008 CGCTAAAACCAACGCGCC 60.501 61.111 5.73 0.00 39.11 6.53
511 535 2.501008 GCTAAAACCAACGCGCCG 60.501 61.111 5.73 0.00 0.00 6.46
512 536 2.957052 GCTAAAACCAACGCGCCGA 61.957 57.895 5.73 0.00 0.00 5.54
513 537 1.791662 CTAAAACCAACGCGCCGAT 59.208 52.632 5.73 0.00 0.00 4.18
514 538 0.167251 CTAAAACCAACGCGCCGATT 59.833 50.000 5.73 0.00 0.00 3.34
515 539 0.592148 TAAAACCAACGCGCCGATTT 59.408 45.000 5.73 4.32 0.00 2.17
518 542 4.174129 CCAACGCGCCGATTTCCC 62.174 66.667 5.73 0.00 0.00 3.97
603 656 2.798145 CGGTCATGAAATGGATCGACGA 60.798 50.000 0.00 0.00 46.73 4.20
604 657 3.194861 GGTCATGAAATGGATCGACGAA 58.805 45.455 0.00 0.00 46.73 3.85
635 688 4.332819 CACTGCCGGTCTAAATCTAAAAGG 59.667 45.833 1.90 0.00 0.00 3.11
637 690 3.520317 TGCCGGTCTAAATCTAAAAGGGA 59.480 43.478 1.90 0.00 0.00 4.20
641 694 6.631088 GCCGGTCTAAATCTAAAAGGGAACTA 60.631 42.308 1.90 0.00 42.68 2.24
644 697 7.820872 CGGTCTAAATCTAAAAGGGAACTAACA 59.179 37.037 0.00 0.00 42.68 2.41
651 704 1.420532 AAGGGAACTAACACCGGGCA 61.421 55.000 6.32 0.00 42.68 5.36
691 766 3.666253 GTTTGGGACGGCCGTTGG 61.666 66.667 34.65 2.16 33.83 3.77
697 772 2.322830 GGACGGCCGTTGGAAGAAC 61.323 63.158 34.65 16.78 0.00 3.01
710 785 0.108945 GAAGAACGAATCGGACGGGT 60.109 55.000 7.80 0.00 34.93 5.28
870 2601 3.193782 AGCCTTGGGAGGATAAGAAAGT 58.806 45.455 0.00 0.00 46.74 2.66
945 2677 0.109597 CGTACGTACAGACCCACCAC 60.110 60.000 24.50 0.00 0.00 4.16
946 2678 0.244721 GTACGTACAGACCCACCACC 59.755 60.000 20.67 0.00 0.00 4.61
950 2682 2.808536 TACAGACCCACCACCCCCT 61.809 63.158 0.00 0.00 0.00 4.79
975 2707 2.125753 CTCCTCTCAGCCACGCAC 60.126 66.667 0.00 0.00 0.00 5.34
1259 2991 2.023181 CGGGCATTGTGCGATTCG 59.977 61.111 0.62 0.62 46.21 3.34
1265 2997 2.287188 GGCATTGTGCGATTCGAATCAT 60.287 45.455 31.57 17.70 46.21 2.45
1268 3000 4.452447 CATTGTGCGATTCGAATCATCTC 58.548 43.478 31.57 23.00 35.11 2.75
1332 3076 1.638467 GCTGGCGCAAATAGACTCG 59.362 57.895 10.83 0.00 35.78 4.18
1396 3146 4.462132 TCGCCATTTCAGATGGAATTTTGA 59.538 37.500 9.15 0.00 41.64 2.69
1402 3152 8.136165 CCATTTCAGATGGAATTTTGATCTCTC 58.864 37.037 0.00 0.00 41.64 3.20
1420 3177 8.206867 TGATCTCTCTAAAATGATACCACCTTG 58.793 37.037 0.00 0.00 0.00 3.61
1437 3194 3.448660 ACCTTGGCTTATGCTCAAATTCC 59.551 43.478 0.13 0.00 39.59 3.01
1467 3227 9.772973 GTGGGAAATTTATTAGGTTTCACTTTT 57.227 29.630 0.00 0.00 36.48 2.27
1540 3322 3.545703 ACTCTTGAACAACTGTTGGAGG 58.454 45.455 23.15 8.46 38.56 4.30
1546 3328 1.878953 ACAACTGTTGGAGGTTAGCG 58.121 50.000 23.15 0.00 34.12 4.26
1570 3352 7.378461 GCGAAAGAATAGTGATAGTCTGAAGAG 59.622 40.741 0.00 0.00 0.00 2.85
1672 3495 2.753247 AGAAGGGAGGCTTAAGACGAT 58.247 47.619 6.67 0.00 0.00 3.73
1682 3505 3.259902 GCTTAAGACGATCCCGACTTTT 58.740 45.455 6.67 0.00 45.44 2.27
1683 3506 3.062234 GCTTAAGACGATCCCGACTTTTG 59.938 47.826 6.67 3.80 45.44 2.44
1701 3524 6.149633 ACTTTTGATTAACGAAGCCATCAAC 58.850 36.000 0.00 0.00 35.78 3.18
1717 3540 1.004277 TCAACCAGCCAGGGATTACAC 59.996 52.381 0.00 0.00 43.89 2.90
1718 3541 1.072266 AACCAGCCAGGGATTACACA 58.928 50.000 0.00 0.00 43.89 3.72
1747 3570 2.939103 GCAACATCGGCTGAAAGATACT 59.061 45.455 0.00 0.00 34.07 2.12
1748 3571 3.001736 GCAACATCGGCTGAAAGATACTC 59.998 47.826 0.00 0.00 34.07 2.59
1749 3572 3.460857 ACATCGGCTGAAAGATACTCC 57.539 47.619 0.00 0.00 34.07 3.85
1750 3573 2.103263 ACATCGGCTGAAAGATACTCCC 59.897 50.000 0.00 0.00 34.07 4.30
1751 3574 2.160721 TCGGCTGAAAGATACTCCCT 57.839 50.000 0.00 0.00 34.07 4.20
1752 3575 3.308035 TCGGCTGAAAGATACTCCCTA 57.692 47.619 0.00 0.00 34.07 3.53
1753 3576 2.957006 TCGGCTGAAAGATACTCCCTAC 59.043 50.000 0.00 0.00 34.07 3.18
1754 3577 2.287668 CGGCTGAAAGATACTCCCTACG 60.288 54.545 0.00 0.00 34.07 3.51
1755 3578 2.694109 GGCTGAAAGATACTCCCTACGT 59.306 50.000 0.00 0.00 34.07 3.57
1756 3579 3.243468 GGCTGAAAGATACTCCCTACGTC 60.243 52.174 0.00 0.00 34.07 4.34
1757 3580 3.633065 GCTGAAAGATACTCCCTACGTCT 59.367 47.826 0.00 0.00 34.07 4.18
1758 3581 4.498345 GCTGAAAGATACTCCCTACGTCTG 60.498 50.000 0.00 0.00 34.07 3.51
1759 3582 3.952323 TGAAAGATACTCCCTACGTCTGG 59.048 47.826 0.00 0.00 0.00 3.86
1760 3583 3.947612 AAGATACTCCCTACGTCTGGA 57.052 47.619 8.86 7.36 0.00 3.86
1761 3584 3.947612 AGATACTCCCTACGTCTGGAA 57.052 47.619 8.86 0.00 0.00 3.53
1762 3585 4.246712 AGATACTCCCTACGTCTGGAAA 57.753 45.455 8.86 0.86 0.00 3.13
1763 3586 4.805744 AGATACTCCCTACGTCTGGAAAT 58.194 43.478 8.86 5.16 0.00 2.17
1764 3587 5.950023 AGATACTCCCTACGTCTGGAAATA 58.050 41.667 8.86 4.74 0.00 1.40
1765 3588 5.769162 AGATACTCCCTACGTCTGGAAATAC 59.231 44.000 8.86 2.03 0.00 1.89
1766 3589 3.978610 ACTCCCTACGTCTGGAAATACT 58.021 45.455 8.86 0.00 0.00 2.12
1767 3590 4.351127 ACTCCCTACGTCTGGAAATACTT 58.649 43.478 8.86 0.00 0.00 2.24
1768 3591 4.159879 ACTCCCTACGTCTGGAAATACTTG 59.840 45.833 8.86 0.00 0.00 3.16
1769 3592 4.091549 TCCCTACGTCTGGAAATACTTGT 58.908 43.478 8.86 0.00 0.00 3.16
1770 3593 4.159135 TCCCTACGTCTGGAAATACTTGTC 59.841 45.833 8.86 0.00 0.00 3.18
1771 3594 4.103357 CCTACGTCTGGAAATACTTGTCG 58.897 47.826 0.00 0.00 0.00 4.35
1772 3595 2.955614 ACGTCTGGAAATACTTGTCGG 58.044 47.619 0.00 0.00 0.00 4.79
1773 3596 2.559668 ACGTCTGGAAATACTTGTCGGA 59.440 45.455 0.00 0.00 0.00 4.55
1774 3597 3.179830 CGTCTGGAAATACTTGTCGGAG 58.820 50.000 0.00 0.00 0.00 4.63
1775 3598 3.119602 CGTCTGGAAATACTTGTCGGAGA 60.120 47.826 0.00 0.00 0.00 3.71
1776 3599 4.617530 CGTCTGGAAATACTTGTCGGAGAA 60.618 45.833 0.00 0.00 39.69 2.87
1777 3600 5.235516 GTCTGGAAATACTTGTCGGAGAAA 58.764 41.667 0.00 0.00 39.69 2.52
1778 3601 5.875359 GTCTGGAAATACTTGTCGGAGAAAT 59.125 40.000 0.00 0.00 39.69 2.17
1779 3602 5.874810 TCTGGAAATACTTGTCGGAGAAATG 59.125 40.000 0.00 0.00 39.69 2.32
1780 3603 5.800296 TGGAAATACTTGTCGGAGAAATGA 58.200 37.500 0.00 0.00 39.69 2.57
1781 3604 6.234920 TGGAAATACTTGTCGGAGAAATGAA 58.765 36.000 0.00 0.00 39.69 2.57
1782 3605 6.884295 TGGAAATACTTGTCGGAGAAATGAAT 59.116 34.615 0.00 0.00 39.69 2.57
1783 3606 7.148255 TGGAAATACTTGTCGGAGAAATGAATG 60.148 37.037 0.00 0.00 39.69 2.67
1784 3607 7.148239 GGAAATACTTGTCGGAGAAATGAATGT 60.148 37.037 0.00 0.00 39.69 2.71
1785 3608 8.786826 AAATACTTGTCGGAGAAATGAATGTA 57.213 30.769 0.00 0.00 39.69 2.29
1786 3609 8.964476 AATACTTGTCGGAGAAATGAATGTAT 57.036 30.769 0.00 0.00 39.69 2.29
1787 3610 6.910536 ACTTGTCGGAGAAATGAATGTATC 57.089 37.500 0.00 0.00 39.69 2.24
1788 3611 6.644347 ACTTGTCGGAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 39.69 1.98
1789 3612 7.782049 ACTTGTCGGAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 39.69 1.98
1790 3613 7.923344 ACTTGTCGGAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 39.69 2.43
1791 3614 7.582667 TGTCGGAGAAATGAATGTATCTAGA 57.417 36.000 0.00 0.00 39.69 2.43
1792 3615 7.426410 TGTCGGAGAAATGAATGTATCTAGAC 58.574 38.462 0.00 0.00 39.69 2.59
1793 3616 6.579292 GTCGGAGAAATGAATGTATCTAGACG 59.421 42.308 0.00 0.00 39.69 4.18
1794 3617 5.343593 CGGAGAAATGAATGTATCTAGACGC 59.656 44.000 0.00 0.00 0.00 5.19
1795 3618 6.216569 GGAGAAATGAATGTATCTAGACGCA 58.783 40.000 0.00 0.00 0.00 5.24
1796 3619 6.870965 GGAGAAATGAATGTATCTAGACGCAT 59.129 38.462 0.00 0.00 0.00 4.73
1797 3620 7.386299 GGAGAAATGAATGTATCTAGACGCATT 59.614 37.037 18.16 18.16 34.67 3.56
1798 3621 8.668510 AGAAATGAATGTATCTAGACGCATTT 57.331 30.769 18.78 15.37 37.40 2.32
1799 3622 9.113838 AGAAATGAATGTATCTAGACGCATTTT 57.886 29.630 18.78 12.38 35.56 1.82
1802 3625 9.547753 AATGAATGTATCTAGACGCATTTTAGT 57.452 29.630 18.78 11.29 32.47 2.24
1803 3626 8.942338 TGAATGTATCTAGACGCATTTTAGTT 57.058 30.769 18.78 3.42 32.47 2.24
1804 3627 9.031360 TGAATGTATCTAGACGCATTTTAGTTC 57.969 33.333 18.78 10.46 32.47 3.01
1805 3628 9.250624 GAATGTATCTAGACGCATTTTAGTTCT 57.749 33.333 18.78 1.71 32.47 3.01
1815 3638 8.827677 AGACGCATTTTAGTTCTAAATACATCC 58.172 33.333 5.95 0.00 0.00 3.51
1816 3639 8.500753 ACGCATTTTAGTTCTAAATACATCCA 57.499 30.769 5.95 0.00 0.00 3.41
1817 3640 9.120538 ACGCATTTTAGTTCTAAATACATCCAT 57.879 29.630 5.95 0.00 0.00 3.41
1818 3641 9.950680 CGCATTTTAGTTCTAAATACATCCATT 57.049 29.630 5.95 0.00 0.00 3.16
1826 3649 9.762381 AGTTCTAAATACATCCATTTTTACCCA 57.238 29.630 0.00 0.00 30.84 4.51
1834 3657 7.095695 ACATCCATTTTTACCCATTTCTACG 57.904 36.000 0.00 0.00 0.00 3.51
1835 3658 6.887545 ACATCCATTTTTACCCATTTCTACGA 59.112 34.615 0.00 0.00 0.00 3.43
1836 3659 7.394923 ACATCCATTTTTACCCATTTCTACGAA 59.605 33.333 0.00 0.00 0.00 3.85
1837 3660 7.762588 TCCATTTTTACCCATTTCTACGAAA 57.237 32.000 0.00 0.00 0.00 3.46
1838 3661 8.179509 TCCATTTTTACCCATTTCTACGAAAA 57.820 30.769 0.00 0.00 0.00 2.29
1839 3662 8.301002 TCCATTTTTACCCATTTCTACGAAAAG 58.699 33.333 0.00 0.00 0.00 2.27
1840 3663 8.085909 CCATTTTTACCCATTTCTACGAAAAGT 58.914 33.333 0.00 0.00 0.00 2.66
1846 3669 7.387119 ACCCATTTCTACGAAAAGTATTTCC 57.613 36.000 0.00 0.00 41.58 3.13
1847 3670 6.093082 ACCCATTTCTACGAAAAGTATTTCCG 59.907 38.462 0.00 0.00 41.58 4.30
1848 3671 6.457799 CCCATTTCTACGAAAAGTATTTCCGG 60.458 42.308 0.00 0.00 41.58 5.14
1849 3672 6.314400 CCATTTCTACGAAAAGTATTTCCGGA 59.686 38.462 0.00 0.00 41.58 5.14
1850 3673 6.710692 TTTCTACGAAAAGTATTTCCGGAC 57.289 37.500 1.83 0.00 41.58 4.79
1851 3674 4.414852 TCTACGAAAAGTATTTCCGGACG 58.585 43.478 1.83 3.25 41.58 4.79
1852 3675 2.340337 ACGAAAAGTATTTCCGGACGG 58.660 47.619 1.83 3.96 41.58 4.79
1853 3676 2.029110 ACGAAAAGTATTTCCGGACGGA 60.029 45.455 1.83 9.76 41.58 4.69
1854 3677 2.601763 CGAAAAGTATTTCCGGACGGAG 59.398 50.000 13.64 0.00 46.06 4.63
1855 3678 2.685850 AAAGTATTTCCGGACGGAGG 57.314 50.000 13.64 0.00 46.06 4.30
1856 3679 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1857 3680 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1858 3681 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1859 3682 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1860 3683 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1861 3684 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1911 3738 4.319639 CACAACACACACTACAAACAAACG 59.680 41.667 0.00 0.00 0.00 3.60
1936 3763 1.506493 AAAACAGAGAGAGCACTGCG 58.494 50.000 0.00 0.00 36.35 5.18
1946 3773 1.546029 AGAGCACTGCGAGTAATGTCA 59.454 47.619 0.00 0.00 0.00 3.58
1961 3788 2.203337 TCAAAGCCCGCTGCACTT 60.203 55.556 0.00 0.00 44.83 3.16
2037 3884 5.620206 TCTGAAAGAATTGTCTACAAGCCA 58.380 37.500 1.62 0.00 42.31 4.75
2041 3888 6.716628 TGAAAGAATTGTCTACAAGCCAGATT 59.283 34.615 1.62 0.00 39.47 2.40
2052 3899 1.588239 AGCCAGATTCATGGGACTGA 58.412 50.000 12.81 0.00 40.97 3.41
2054 3901 2.309755 AGCCAGATTCATGGGACTGAAA 59.690 45.455 12.81 0.00 40.97 2.69
2067 3914 2.962421 GGACTGAAAACACCCAATCCAA 59.038 45.455 0.00 0.00 0.00 3.53
2070 3917 3.772025 ACTGAAAACACCCAATCCAACAA 59.228 39.130 0.00 0.00 0.00 2.83
2078 3925 1.273327 CCCAATCCAACAACTGCCTTC 59.727 52.381 0.00 0.00 0.00 3.46
2083 3930 4.851639 ATCCAACAACTGCCTTCTCTAT 57.148 40.909 0.00 0.00 0.00 1.98
2086 3933 2.301577 ACAACTGCCTTCTCTATCGC 57.698 50.000 0.00 0.00 0.00 4.58
2157 4004 2.571757 CGTAGAGGCGCTCAACCA 59.428 61.111 7.64 0.00 32.06 3.67
2175 4022 2.836981 ACCAAGAGCTAGAACAGATGCT 59.163 45.455 0.00 0.00 38.59 3.79
2181 4028 1.407989 GCTAGAACAGATGCTGGCCTT 60.408 52.381 3.32 0.00 35.51 4.35
2185 4032 2.097825 GAACAGATGCTGGCCTTGAAT 58.902 47.619 3.32 0.00 35.51 2.57
2205 4052 0.731417 CTAGAGCAGCCATTGTGCAC 59.269 55.000 10.75 10.75 43.82 4.57
2206 4053 0.036590 TAGAGCAGCCATTGTGCACA 59.963 50.000 17.42 17.42 43.82 4.57
2216 4063 1.135199 CATTGTGCACAGCCATCTTCC 60.135 52.381 20.59 0.00 0.00 3.46
2217 4064 1.236616 TTGTGCACAGCCATCTTCCG 61.237 55.000 20.59 0.00 0.00 4.30
2218 4065 1.672356 GTGCACAGCCATCTTCCGT 60.672 57.895 13.17 0.00 0.00 4.69
2219 4066 1.672030 TGCACAGCCATCTTCCGTG 60.672 57.895 0.00 0.00 0.00 4.94
2221 4068 1.746615 CACAGCCATCTTCCGTGGG 60.747 63.158 0.00 0.00 37.22 4.61
2222 4069 1.918293 ACAGCCATCTTCCGTGGGA 60.918 57.895 0.00 0.00 37.22 4.37
2223 4070 1.299648 CAGCCATCTTCCGTGGGAA 59.700 57.895 0.00 0.00 39.66 3.97
2233 4080 4.465512 CGTGGGAAGCGCATGCAC 62.466 66.667 19.57 8.32 46.23 4.57
2268 4115 3.792047 CACACACCAGCCGCATCG 61.792 66.667 0.00 0.00 0.00 3.84
2296 4143 1.066716 CCCTGGTCGACCGAAAACATA 60.067 52.381 28.70 8.44 39.43 2.29
2303 4150 3.370061 GTCGACCGAAAACATAGGGAAAG 59.630 47.826 3.51 0.00 0.00 2.62
2314 4255 0.991920 TAGGGAAAGCCACTGGGAAG 59.008 55.000 0.00 0.00 35.59 3.46
2320 4261 0.693049 AAGCCACTGGGAAGAATCGT 59.307 50.000 0.00 0.00 35.59 3.73
2322 4263 0.036388 GCCACTGGGAAGAATCGTCA 60.036 55.000 0.00 0.00 35.59 4.35
2328 4269 4.697352 CACTGGGAAGAATCGTCAAAGAAT 59.303 41.667 0.00 0.00 0.00 2.40
2385 4326 2.164422 TCTGAGTATTGAGGCACAGACG 59.836 50.000 0.00 0.00 29.82 4.18
2386 4327 1.281899 GAGTATTGAGGCACAGACGC 58.718 55.000 0.00 0.00 0.00 5.19
2388 4329 0.721718 GTATTGAGGCACAGACGCAC 59.278 55.000 0.00 0.00 0.00 5.34
2389 4330 0.320050 TATTGAGGCACAGACGCACA 59.680 50.000 0.00 0.00 0.00 4.57
2467 4408 2.191981 GGAAACCCTATCTCCCTCCA 57.808 55.000 0.00 0.00 0.00 3.86
2472 4413 0.030092 CCCTATCTCCCTCCACCCAA 60.030 60.000 0.00 0.00 0.00 4.12
2485 4426 2.815647 CCCAAGCTCGAAGGCGTC 60.816 66.667 0.00 0.00 38.98 5.19
2532 4473 0.179018 GGCCACTGAAGAACACCACT 60.179 55.000 0.00 0.00 0.00 4.00
2576 4517 3.391296 GCTGGACCTATGAACCTCCATTA 59.609 47.826 0.00 0.00 32.27 1.90
2583 4524 6.435164 ACCTATGAACCTCCATTAATTTGCT 58.565 36.000 0.00 0.00 0.00 3.91
2619 4562 2.113139 CCACCGAGCCAACCAACT 59.887 61.111 0.00 0.00 0.00 3.16
2654 4597 2.104111 CCCAAAGAACCAAAACTTCCCC 59.896 50.000 0.00 0.00 0.00 4.81
2727 4673 1.163420 GGCGGGTTTTTGGGCTTTTG 61.163 55.000 0.00 0.00 0.00 2.44
2748 4695 1.458209 CAGGAATTGGGATGGGGGC 60.458 63.158 0.00 0.00 0.00 5.80
2750 4697 2.600731 GAATTGGGATGGGGGCGA 59.399 61.111 0.00 0.00 0.00 5.54
2766 4713 0.716666 GCGAAGAAAAGAGACCTCGC 59.283 55.000 0.00 0.00 38.15 5.03
2768 4715 1.336887 CGAAGAAAAGAGACCTCGCCA 60.337 52.381 0.00 0.00 34.09 5.69
2770 4717 1.633774 AGAAAAGAGACCTCGCCAGA 58.366 50.000 0.00 0.00 34.09 3.86
2778 4725 3.847602 CCTCGCCAGAGCCTCCAG 61.848 72.222 0.00 0.00 43.05 3.86
2872 4819 2.092646 TCAAGCCTACACAACCAACACT 60.093 45.455 0.00 0.00 0.00 3.55
2875 4822 1.202770 GCCTACACAACCAACACTCCT 60.203 52.381 0.00 0.00 0.00 3.69
2880 4827 2.025321 ACACAACCAACACTCCTCCTTT 60.025 45.455 0.00 0.00 0.00 3.11
2956 5072 1.075601 AAGGGGGAGATGACTTTGCA 58.924 50.000 0.00 0.00 0.00 4.08
2999 5115 4.473520 CCGCCACCTTCATCGGCT 62.474 66.667 0.00 0.00 43.95 5.52
3016 5132 4.269523 TTCCGCACCTGCTTGCCT 62.270 61.111 0.00 0.00 39.53 4.75
3017 5133 2.803155 CTTCCGCACCTGCTTGCCTA 62.803 60.000 0.00 0.00 39.53 3.93
3104 5220 3.775654 CGCCCCTGAGTCACCCTC 61.776 72.222 0.00 0.00 40.89 4.30
3146 5262 1.901085 GAAGCGTCCAGGAGGTCAT 59.099 57.895 10.89 0.00 35.89 3.06
3172 5288 6.537355 ACAGAGTACTACACTTACCACAGTA 58.463 40.000 0.00 0.00 37.72 2.74
3173 5289 7.173722 ACAGAGTACTACACTTACCACAGTAT 58.826 38.462 0.00 0.00 37.72 2.12
3174 5290 7.120873 ACAGAGTACTACACTTACCACAGTATG 59.879 40.741 0.00 0.00 39.30 2.39
3175 5291 7.120873 CAGAGTACTACACTTACCACAGTATGT 59.879 40.741 0.00 0.00 45.75 2.29
3176 5292 8.324306 AGAGTACTACACTTACCACAGTATGTA 58.676 37.037 0.00 0.00 43.57 2.29
3177 5293 8.868522 AGTACTACACTTACCACAGTATGTAA 57.131 34.615 0.00 0.00 41.23 2.41
3236 5592 6.989759 TCAAGAGCTCTGTTGTATTTGTTACA 59.010 34.615 19.06 0.00 39.07 2.41
3237 5593 6.787085 AGAGCTCTGTTGTATTTGTTACAC 57.213 37.500 17.42 0.00 40.53 2.90
3312 5669 7.311092 TCTGAGTTTGACCAGGTTTATAGAA 57.689 36.000 0.00 0.00 0.00 2.10
3313 5670 7.918076 TCTGAGTTTGACCAGGTTTATAGAAT 58.082 34.615 0.00 0.00 0.00 2.40
3404 5761 9.407380 TGATGTTGATTTGCTATTGTAGGTATT 57.593 29.630 0.00 0.00 0.00 1.89
3421 5778 9.841295 TGTAGGTATTGATAATTTTGTACTCCC 57.159 33.333 0.00 0.00 0.00 4.30
3424 5781 9.004231 AGGTATTGATAATTTTGTACTCCCTCT 57.996 33.333 0.00 0.00 0.00 3.69
3425 5782 9.057089 GGTATTGATAATTTTGTACTCCCTCTG 57.943 37.037 0.00 0.00 0.00 3.35
3426 5783 9.832445 GTATTGATAATTTTGTACTCCCTCTGA 57.168 33.333 0.00 0.00 0.00 3.27
3428 5785 8.964476 TTGATAATTTTGTACTCCCTCTGATC 57.036 34.615 0.00 0.00 0.00 2.92
3429 5786 7.509546 TGATAATTTTGTACTCCCTCTGATCC 58.490 38.462 0.00 0.00 0.00 3.36
3430 5787 5.779241 AATTTTGTACTCCCTCTGATCCA 57.221 39.130 0.00 0.00 0.00 3.41
3431 5788 5.983333 ATTTTGTACTCCCTCTGATCCAT 57.017 39.130 0.00 0.00 0.00 3.41
3432 5789 7.451731 AATTTTGTACTCCCTCTGATCCATA 57.548 36.000 0.00 0.00 0.00 2.74
3433 5790 7.639062 ATTTTGTACTCCCTCTGATCCATAT 57.361 36.000 0.00 0.00 0.00 1.78
3434 5791 7.451731 TTTTGTACTCCCTCTGATCCATATT 57.548 36.000 0.00 0.00 0.00 1.28
3435 5792 8.561536 TTTTGTACTCCCTCTGATCCATATTA 57.438 34.615 0.00 0.00 0.00 0.98
3436 5793 7.540474 TTGTACTCCCTCTGATCCATATTAC 57.460 40.000 0.00 0.00 0.00 1.89
3437 5794 6.864421 TGTACTCCCTCTGATCCATATTACT 58.136 40.000 0.00 0.00 0.00 2.24
3438 5795 7.306013 TGTACTCCCTCTGATCCATATTACTT 58.694 38.462 0.00 0.00 0.00 2.24
3439 5796 6.678568 ACTCCCTCTGATCCATATTACTTG 57.321 41.667 0.00 0.00 0.00 3.16
3440 5797 5.545723 ACTCCCTCTGATCCATATTACTTGG 59.454 44.000 0.00 0.00 35.45 3.61
3441 5798 5.476983 TCCCTCTGATCCATATTACTTGGT 58.523 41.667 0.00 0.00 35.64 3.67
3442 5799 5.307976 TCCCTCTGATCCATATTACTTGGTG 59.692 44.000 0.00 0.00 35.64 4.17
3443 5800 4.999950 CCTCTGATCCATATTACTTGGTGC 59.000 45.833 0.00 0.00 35.64 5.01
3444 5801 5.455183 CCTCTGATCCATATTACTTGGTGCA 60.455 44.000 0.00 0.00 35.64 4.57
3445 5802 5.614308 TCTGATCCATATTACTTGGTGCAG 58.386 41.667 0.00 0.00 37.59 4.41
3446 5803 4.136796 TGATCCATATTACTTGGTGCAGC 58.863 43.478 9.47 9.47 35.64 5.25
3447 5804 3.931907 TCCATATTACTTGGTGCAGCT 57.068 42.857 18.08 0.00 35.64 4.24
3448 5805 4.235079 TCCATATTACTTGGTGCAGCTT 57.765 40.909 18.08 4.01 35.64 3.74
3449 5806 4.599041 TCCATATTACTTGGTGCAGCTTT 58.401 39.130 18.08 3.64 35.64 3.51
3450 5807 5.750524 TCCATATTACTTGGTGCAGCTTTA 58.249 37.500 18.08 2.64 35.64 1.85
3451 5808 5.822519 TCCATATTACTTGGTGCAGCTTTAG 59.177 40.000 18.08 13.50 35.64 1.85
3452 5809 5.590259 CCATATTACTTGGTGCAGCTTTAGT 59.410 40.000 18.08 18.07 0.00 2.24
3453 5810 6.765989 CCATATTACTTGGTGCAGCTTTAGTA 59.234 38.462 18.08 17.14 0.00 1.82
3454 5811 7.254795 CCATATTACTTGGTGCAGCTTTAGTAC 60.255 40.741 18.08 0.00 0.00 2.73
3455 5812 3.485463 ACTTGGTGCAGCTTTAGTACA 57.515 42.857 18.08 0.00 0.00 2.90
3456 5813 3.815809 ACTTGGTGCAGCTTTAGTACAA 58.184 40.909 18.08 0.00 0.00 2.41
3457 5814 3.564225 ACTTGGTGCAGCTTTAGTACAAC 59.436 43.478 18.08 0.00 0.00 3.32
3458 5815 3.485463 TGGTGCAGCTTTAGTACAACT 57.515 42.857 18.08 0.00 0.00 3.16
3459 5816 4.610605 TGGTGCAGCTTTAGTACAACTA 57.389 40.909 18.08 0.00 0.00 2.24
3460 5817 4.312443 TGGTGCAGCTTTAGTACAACTAC 58.688 43.478 18.08 0.00 28.93 2.73
3595 5958 4.524053 TGATACAACTCTAGAGAAGCGGA 58.476 43.478 26.57 8.15 0.00 5.54
3688 6052 6.248631 GCAATTTTCACTGTAGGAATACGTC 58.751 40.000 0.00 0.00 0.00 4.34
3702 6066 6.045318 AGGAATACGTCATATATGCTGATGC 58.955 40.000 7.92 0.00 33.77 3.91
3708 6072 6.230472 ACGTCATATATGCTGATGCCTTTTA 58.770 36.000 7.92 0.00 38.71 1.52
3710 6074 7.148356 ACGTCATATATGCTGATGCCTTTTATG 60.148 37.037 7.92 0.00 38.71 1.90
3849 6214 4.706962 ACTGTTCTTGAAAACTGCCTTCTT 59.293 37.500 0.00 0.00 32.97 2.52
3887 6252 5.162980 ACTTCCTTTCTCCATGGTTTTAGGT 60.163 40.000 12.58 0.00 0.00 3.08
4009 6375 3.448660 GGAATTTGTCCCAAGGAATCCAG 59.551 47.826 0.61 0.00 41.10 3.86
4064 6430 8.877864 TCCACTCCAAACTCATGTAAATAATT 57.122 30.769 0.00 0.00 0.00 1.40
4099 6467 7.824289 CCTATGGTAGAATCAAAGACACTTTGA 59.176 37.037 22.89 22.89 41.91 2.69
4104 6472 4.756642 AGAATCAAAGACACTTTGATGCGA 59.243 37.500 28.29 10.99 45.04 5.10
4111 6479 4.351192 AGACACTTTGATGCGAACAAAAC 58.649 39.130 0.00 0.00 36.91 2.43
4118 6486 2.550606 TGATGCGAACAAAACCCTGTAC 59.449 45.455 0.00 0.00 0.00 2.90
4153 6521 1.787847 CCACTGCAATCCGACGTTC 59.212 57.895 0.00 0.00 0.00 3.95
4212 6644 6.434652 TCGAGTAGGAAAAGTTCTCTGAGATT 59.565 38.462 8.42 0.00 0.00 2.40
4213 6645 6.529829 CGAGTAGGAAAAGTTCTCTGAGATTG 59.470 42.308 8.42 0.00 0.00 2.67
4266 6698 3.370953 GGTTGCCTCCACTATCAACAGAT 60.371 47.826 6.34 0.00 40.20 2.90
4269 6701 2.546795 GCCTCCACTATCAACAGATCCG 60.547 54.545 0.00 0.00 0.00 4.18
4272 6704 4.363999 CTCCACTATCAACAGATCCGAAC 58.636 47.826 0.00 0.00 0.00 3.95
4554 6988 6.091577 CACACTGCATTATTCATTGTTGCATT 59.908 34.615 0.00 0.00 41.95 3.56
4597 7031 5.627499 TTCAGATGTACCTTTGCATTGAC 57.373 39.130 0.00 0.00 0.00 3.18
4650 7089 3.550820 TGCTTGTGTTATTCACCACACT 58.449 40.909 4.23 0.00 45.61 3.55
4676 7115 2.557924 TGTTGCAGTTGCTCCCAAATAG 59.442 45.455 5.62 0.00 42.66 1.73
4677 7116 2.819608 GTTGCAGTTGCTCCCAAATAGA 59.180 45.455 5.62 0.00 42.66 1.98
4678 7117 2.436417 TGCAGTTGCTCCCAAATAGAC 58.564 47.619 5.62 0.00 42.66 2.59
4679 7118 1.745653 GCAGTTGCTCCCAAATAGACC 59.254 52.381 0.00 0.00 38.21 3.85
4702 7143 6.431234 ACCATTTTCAGATCTACCTTTGTGTC 59.569 38.462 0.00 0.00 0.00 3.67
4754 7195 6.720012 AACGTTTGTCTTTGAAATGCTTTT 57.280 29.167 0.00 0.00 0.00 2.27
4761 7202 5.163468 TGTCTTTGAAATGCTTTTAGGCACA 60.163 36.000 0.00 0.00 45.36 4.57
4770 7211 3.445450 TGCTTTTAGGCACAAACTTCACA 59.555 39.130 0.00 0.00 37.29 3.58
4857 7298 2.779506 GTCTTGTCGGGATCAACCTTT 58.220 47.619 0.00 0.00 38.98 3.11
4887 7328 6.281405 AGCTAATATGAAGGACGTCGATTTT 58.719 36.000 9.92 1.19 0.00 1.82
4966 7407 3.753294 ACGAAGACACAAGATTGGAGT 57.247 42.857 0.00 0.00 0.00 3.85
5350 7792 2.414768 CGTTCCAAATTACTCGTCGC 57.585 50.000 0.00 0.00 0.00 5.19
5351 7793 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
5352 7794 2.156117 CGTTCCAAATTACTCGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
5353 7795 3.363182 CGTTCCAAATTACTCGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
5354 7796 4.529446 GTTCCAAATTACTCGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
5355 7797 4.815040 TCCAAATTACTCGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
5356 7798 5.365403 TCCAAATTACTCGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
5357 7799 5.150683 TCCAAATTACTCGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
5358 7800 5.049336 TCCAAATTACTCGTCGCAAAAATGA 60.049 36.000 0.00 0.00 0.00 2.57
5359 7801 5.627367 CCAAATTACTCGTCGCAAAAATGAA 59.373 36.000 0.00 0.00 0.00 2.57
5360 7802 6.307800 CCAAATTACTCGTCGCAAAAATGAAT 59.692 34.615 0.00 0.00 0.00 2.57
5361 7803 6.853279 AATTACTCGTCGCAAAAATGAATG 57.147 33.333 0.00 0.00 0.00 2.67
5362 7804 3.896648 ACTCGTCGCAAAAATGAATGT 57.103 38.095 0.00 0.00 0.00 2.71
5363 7805 6.469139 TTACTCGTCGCAAAAATGAATGTA 57.531 33.333 0.00 0.00 0.00 2.29
5364 7806 5.545658 ACTCGTCGCAAAAATGAATGTAT 57.454 34.783 0.00 0.00 0.00 2.29
5365 7807 5.560148 ACTCGTCGCAAAAATGAATGTATC 58.440 37.500 0.00 0.00 0.00 2.24
5366 7808 5.351465 ACTCGTCGCAAAAATGAATGTATCT 59.649 36.000 0.00 0.00 0.00 1.98
5367 7809 6.533723 ACTCGTCGCAAAAATGAATGTATCTA 59.466 34.615 0.00 0.00 0.00 1.98
5368 7810 6.933130 TCGTCGCAAAAATGAATGTATCTAG 58.067 36.000 0.00 0.00 0.00 2.43
5369 7811 6.754675 TCGTCGCAAAAATGAATGTATCTAGA 59.245 34.615 0.00 0.00 0.00 2.43
5370 7812 7.276878 TCGTCGCAAAAATGAATGTATCTAGAA 59.723 33.333 0.00 0.00 0.00 2.10
5371 7813 7.370836 CGTCGCAAAAATGAATGTATCTAGAAC 59.629 37.037 0.00 0.00 0.00 3.01
5372 7814 8.391106 GTCGCAAAAATGAATGTATCTAGAACT 58.609 33.333 0.00 0.00 0.00 3.01
5373 7815 9.594478 TCGCAAAAATGAATGTATCTAGAACTA 57.406 29.630 0.00 0.00 0.00 2.24
5402 7844 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
5403 7845 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
5404 7846 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
5405 7847 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
5406 7848 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
5407 7849 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
5408 7850 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
5409 7851 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
5410 7852 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
5411 7853 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
5412 7854 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
5413 7855 6.037172 ACATCCATACTTGCGACAAGTAATTC 59.963 38.462 25.44 0.00 36.45 2.17
5414 7856 4.565166 TCCATACTTGCGACAAGTAATTCG 59.435 41.667 25.44 17.44 36.45 3.34
5415 7857 4.260212 CCATACTTGCGACAAGTAATTCGG 60.260 45.833 25.44 20.47 36.45 4.30
5416 7858 3.034721 ACTTGCGACAAGTAATTCGGA 57.965 42.857 19.21 0.00 35.73 4.55
5417 7859 3.395639 ACTTGCGACAAGTAATTCGGAA 58.604 40.909 19.21 0.00 42.34 4.30
5418 7860 3.185797 ACTTGCGACAAGTAATTCGGAAC 59.814 43.478 19.21 0.00 40.13 3.62
5419 7861 6.846654 TACTTGCGACAAGTAATTCGGAACG 61.847 44.000 21.94 0.00 40.13 3.95
5434 7876 0.108281 GAACGGAGGGAGTACAAGCC 60.108 60.000 0.00 0.00 0.00 4.35
5928 8370 1.593209 GTCGTTGTTGCCGGAGTCA 60.593 57.895 5.05 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 119 1.228124 CTCCCACGGCTTTTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
129 132 0.397675 ATGATCTCACGCCTCTCCCA 60.398 55.000 0.00 0.00 0.00 4.37
246 249 4.681978 GGCACCTTCGACACCGCT 62.682 66.667 0.00 0.00 35.37 5.52
333 336 4.125695 GGGCGCTTCGGACTACGT 62.126 66.667 7.64 0.00 44.69 3.57
336 339 3.458163 CCTGGGCGCTTCGGACTA 61.458 66.667 7.64 0.00 0.00 2.59
355 359 1.811266 GTCACCATGTCGATGCGCT 60.811 57.895 9.73 0.00 0.00 5.92
436 440 3.378339 GCTCGTTATTAAGAAGGCGCTA 58.622 45.455 7.64 0.00 0.00 4.26
496 520 0.592148 AAATCGGCGCGTTGGTTTTA 59.408 45.000 8.43 0.00 0.00 1.52
536 587 2.484065 CCATATCGTCGCCCTGGTTTTA 60.484 50.000 0.00 0.00 0.00 1.52
576 629 3.124270 ATTTCATGACCGCGCGCA 61.124 55.556 32.61 19.15 0.00 6.09
620 673 8.944029 GGTGTTAGTTCCCTTTTAGATTTAGAC 58.056 37.037 0.00 0.00 0.00 2.59
623 676 6.880529 CCGGTGTTAGTTCCCTTTTAGATTTA 59.119 38.462 0.00 0.00 0.00 1.40
635 688 1.376812 CCTGCCCGGTGTTAGTTCC 60.377 63.158 0.00 0.00 0.00 3.62
637 690 2.033602 GCCTGCCCGGTGTTAGTT 59.966 61.111 0.00 0.00 34.25 2.24
681 756 2.647680 TTCGTTCTTCCAACGGCCGT 62.648 55.000 28.70 28.70 43.24 5.68
688 763 1.670674 CCGTCCGATTCGTTCTTCCAA 60.671 52.381 5.20 0.00 0.00 3.53
690 765 0.804933 CCCGTCCGATTCGTTCTTCC 60.805 60.000 5.20 0.00 0.00 3.46
691 766 0.108945 ACCCGTCCGATTCGTTCTTC 60.109 55.000 5.20 0.00 0.00 2.87
697 772 2.578713 CGTCACCCGTCCGATTCG 60.579 66.667 0.00 0.00 0.00 3.34
870 2601 4.016105 GGGGGAGATAGAAGGGATCATAGA 60.016 50.000 0.00 0.00 0.00 1.98
945 2677 0.933700 AGAGGAGAAGAGAGAGGGGG 59.066 60.000 0.00 0.00 0.00 5.40
946 2678 1.568597 TGAGAGGAGAAGAGAGAGGGG 59.431 57.143 0.00 0.00 0.00 4.79
950 2682 1.638070 TGGCTGAGAGGAGAAGAGAGA 59.362 52.381 0.00 0.00 0.00 3.10
1044 2776 2.340078 TGCAGACGTGGAGCAGAC 59.660 61.111 0.00 0.00 33.75 3.51
1052 2784 2.675056 GGCTGAAGCTGCAGACGTG 61.675 63.158 26.87 0.00 41.70 4.49
1317 3061 2.621000 CGCGAGTCTATTTGCGCC 59.379 61.111 4.18 0.00 46.04 6.53
1332 3076 0.804933 ATCCTAGGAAAACGCGACGC 60.805 55.000 17.30 10.49 0.00 5.19
1381 3131 9.964354 TTTTAGAGAGATCAAAATTCCATCTGA 57.036 29.630 0.00 0.00 0.00 3.27
1396 3146 7.512992 CCAAGGTGGTATCATTTTAGAGAGAT 58.487 38.462 0.00 0.00 31.35 2.75
1402 3152 7.651808 CATAAGCCAAGGTGGTATCATTTTAG 58.348 38.462 0.00 0.00 40.46 1.85
1420 3177 5.278660 CCACTATGGAATTTGAGCATAAGCC 60.279 44.000 0.00 0.00 40.96 4.35
1475 3257 9.921637 TTAAACCCAGTATTTAGAAAGCAATTG 57.078 29.630 0.00 0.00 0.00 2.32
1540 3322 8.129840 TCAGACTATCACTATTCTTTCGCTAAC 58.870 37.037 0.00 0.00 0.00 2.34
1570 3352 8.669946 TTTTCTCCAAAACCAATACCATTTTC 57.330 30.769 0.00 0.00 0.00 2.29
1635 3417 9.078990 CCTCCCTTCTAAAAAGTACTCAAAATT 57.921 33.333 0.00 0.00 0.00 1.82
1637 3419 6.489022 GCCTCCCTTCTAAAAAGTACTCAAAA 59.511 38.462 0.00 0.00 0.00 2.44
1658 3481 1.030457 TCGGGATCGTCTTAAGCCTC 58.970 55.000 0.00 0.00 37.69 4.70
1672 3495 3.434299 GCTTCGTTAATCAAAAGTCGGGA 59.566 43.478 0.00 0.00 0.00 5.14
1682 3505 3.680490 TGGTTGATGGCTTCGTTAATCA 58.320 40.909 0.00 0.00 0.00 2.57
1683 3506 3.487544 GCTGGTTGATGGCTTCGTTAATC 60.488 47.826 0.00 0.00 0.00 1.75
1701 3524 0.749454 GCTGTGTAATCCCTGGCTGG 60.749 60.000 2.96 2.96 0.00 4.85
1717 3540 1.210931 CCGATGTTGCTTGGTGCTG 59.789 57.895 0.00 0.00 43.37 4.41
1718 3541 2.629656 GCCGATGTTGCTTGGTGCT 61.630 57.895 0.00 0.00 43.37 4.40
1747 3570 4.091549 ACAAGTATTTCCAGACGTAGGGA 58.908 43.478 3.65 3.65 0.00 4.20
1748 3571 4.430908 GACAAGTATTTCCAGACGTAGGG 58.569 47.826 6.67 2.78 0.00 3.53
1749 3572 4.103357 CGACAAGTATTTCCAGACGTAGG 58.897 47.826 0.00 0.00 0.00 3.18
1750 3573 4.103357 CCGACAAGTATTTCCAGACGTAG 58.897 47.826 0.00 0.00 0.00 3.51
1751 3574 3.758023 TCCGACAAGTATTTCCAGACGTA 59.242 43.478 0.00 0.00 0.00 3.57
1752 3575 2.559668 TCCGACAAGTATTTCCAGACGT 59.440 45.455 0.00 0.00 0.00 4.34
1753 3576 3.119602 TCTCCGACAAGTATTTCCAGACG 60.120 47.826 0.00 0.00 0.00 4.18
1754 3577 4.451629 TCTCCGACAAGTATTTCCAGAC 57.548 45.455 0.00 0.00 0.00 3.51
1755 3578 5.477607 TTTCTCCGACAAGTATTTCCAGA 57.522 39.130 0.00 0.00 0.00 3.86
1756 3579 5.874810 TCATTTCTCCGACAAGTATTTCCAG 59.125 40.000 0.00 0.00 0.00 3.86
1757 3580 5.800296 TCATTTCTCCGACAAGTATTTCCA 58.200 37.500 0.00 0.00 0.00 3.53
1758 3581 6.737254 TTCATTTCTCCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
1759 3582 7.752695 ACATTCATTTCTCCGACAAGTATTTC 58.247 34.615 0.00 0.00 0.00 2.17
1760 3583 7.687941 ACATTCATTTCTCCGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
1761 3584 8.964476 ATACATTCATTTCTCCGACAAGTATT 57.036 30.769 0.00 0.00 0.00 1.89
1762 3585 8.424918 AGATACATTCATTTCTCCGACAAGTAT 58.575 33.333 0.00 0.00 0.00 2.12
1763 3586 7.782049 AGATACATTCATTTCTCCGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1764 3587 6.644347 AGATACATTCATTTCTCCGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1765 3588 8.138074 TCTAGATACATTCATTTCTCCGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1766 3589 7.921214 GTCTAGATACATTCATTTCTCCGACAA 59.079 37.037 0.00 0.00 0.00 3.18
1767 3590 7.426410 GTCTAGATACATTCATTTCTCCGACA 58.574 38.462 0.00 0.00 0.00 4.35
1768 3591 6.579292 CGTCTAGATACATTCATTTCTCCGAC 59.421 42.308 0.00 0.00 0.00 4.79
1769 3592 6.669278 CGTCTAGATACATTCATTTCTCCGA 58.331 40.000 0.00 0.00 0.00 4.55
1770 3593 5.343593 GCGTCTAGATACATTCATTTCTCCG 59.656 44.000 0.00 0.00 0.00 4.63
1771 3594 6.216569 TGCGTCTAGATACATTCATTTCTCC 58.783 40.000 0.00 0.00 0.00 3.71
1772 3595 7.881643 ATGCGTCTAGATACATTCATTTCTC 57.118 36.000 0.00 0.00 0.00 2.87
1773 3596 8.668510 AAATGCGTCTAGATACATTCATTTCT 57.331 30.769 18.26 4.82 31.75 2.52
1776 3599 9.547753 ACTAAAATGCGTCTAGATACATTCATT 57.452 29.630 18.26 13.89 31.75 2.57
1777 3600 9.547753 AACTAAAATGCGTCTAGATACATTCAT 57.452 29.630 18.26 14.15 31.75 2.57
1778 3601 8.942338 AACTAAAATGCGTCTAGATACATTCA 57.058 30.769 18.26 11.38 31.75 2.57
1779 3602 9.250624 AGAACTAAAATGCGTCTAGATACATTC 57.749 33.333 18.26 9.62 31.75 2.67
1789 3612 8.827677 GGATGTATTTAGAACTAAAATGCGTCT 58.172 33.333 10.38 0.00 38.38 4.18
1790 3613 8.609176 TGGATGTATTTAGAACTAAAATGCGTC 58.391 33.333 10.38 12.21 38.38 5.19
1791 3614 8.500753 TGGATGTATTTAGAACTAAAATGCGT 57.499 30.769 10.38 6.06 38.38 5.24
1792 3615 9.950680 AATGGATGTATTTAGAACTAAAATGCG 57.049 29.630 10.38 0.00 38.38 4.73
1800 3623 9.762381 TGGGTAAAAATGGATGTATTTAGAACT 57.238 29.630 0.00 0.00 30.47 3.01
1808 3631 8.846211 CGTAGAAATGGGTAAAAATGGATGTAT 58.154 33.333 0.00 0.00 0.00 2.29
1809 3632 8.047911 TCGTAGAAATGGGTAAAAATGGATGTA 58.952 33.333 0.00 0.00 0.00 2.29
1810 3633 6.887545 TCGTAGAAATGGGTAAAAATGGATGT 59.112 34.615 0.00 0.00 0.00 3.06
1811 3634 7.328277 TCGTAGAAATGGGTAAAAATGGATG 57.672 36.000 0.00 0.00 0.00 3.51
1812 3635 7.948034 TTCGTAGAAATGGGTAAAAATGGAT 57.052 32.000 0.00 0.00 45.90 3.41
1813 3636 7.762588 TTTCGTAGAAATGGGTAAAAATGGA 57.237 32.000 0.00 0.00 45.90 3.41
1814 3637 8.085909 ACTTTTCGTAGAAATGGGTAAAAATGG 58.914 33.333 11.35 0.00 45.90 3.16
1820 3643 8.949177 GGAAATACTTTTCGTAGAAATGGGTAA 58.051 33.333 11.35 0.00 45.90 2.85
1821 3644 7.278424 CGGAAATACTTTTCGTAGAAATGGGTA 59.722 37.037 11.35 8.58 45.90 3.69
1822 3645 6.093082 CGGAAATACTTTTCGTAGAAATGGGT 59.907 38.462 11.35 7.16 45.90 4.51
1823 3646 6.457799 CCGGAAATACTTTTCGTAGAAATGGG 60.458 42.308 0.00 2.84 45.90 4.00
1824 3647 6.314400 TCCGGAAATACTTTTCGTAGAAATGG 59.686 38.462 0.00 4.70 45.90 3.16
1825 3648 7.178074 GTCCGGAAATACTTTTCGTAGAAATG 58.822 38.462 5.23 6.79 45.90 2.32
1826 3649 6.035327 CGTCCGGAAATACTTTTCGTAGAAAT 59.965 38.462 5.23 0.00 45.90 2.17
1827 3650 5.345741 CGTCCGGAAATACTTTTCGTAGAAA 59.654 40.000 5.23 0.00 45.90 2.52
1828 3651 4.858692 CGTCCGGAAATACTTTTCGTAGAA 59.141 41.667 5.23 0.00 45.90 2.10
1829 3652 4.414852 CGTCCGGAAATACTTTTCGTAGA 58.585 43.478 5.23 0.00 41.84 2.59
1830 3653 3.549070 CCGTCCGGAAATACTTTTCGTAG 59.451 47.826 5.23 0.00 41.84 3.51
1831 3654 3.192422 TCCGTCCGGAAATACTTTTCGTA 59.808 43.478 5.23 0.00 41.84 3.43
1832 3655 2.029110 TCCGTCCGGAAATACTTTTCGT 60.029 45.455 5.23 0.00 41.84 3.85
1833 3656 2.601763 CTCCGTCCGGAAATACTTTTCG 59.398 50.000 5.23 1.25 44.66 3.46
1834 3657 2.934553 CCTCCGTCCGGAAATACTTTTC 59.065 50.000 5.23 0.00 44.66 2.29
1835 3658 2.355412 CCCTCCGTCCGGAAATACTTTT 60.355 50.000 5.23 0.00 44.66 2.27
1836 3659 1.208776 CCCTCCGTCCGGAAATACTTT 59.791 52.381 5.23 0.00 44.66 2.66
1837 3660 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1838 3661 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1839 3662 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1840 3663 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1841 3664 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1842 3665 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1843 3666 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1844 3667 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
1845 3668 1.664321 CTTGTACTCCCTCCGTCCGG 61.664 65.000 0.00 0.00 0.00 5.14
1846 3669 1.664321 CCTTGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
1847 3670 1.328430 CCCTTGTACTCCCTCCGTCC 61.328 65.000 0.00 0.00 0.00 4.79
1848 3671 0.324091 TCCCTTGTACTCCCTCCGTC 60.324 60.000 0.00 0.00 0.00 4.79
1849 3672 0.324460 CTCCCTTGTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
1850 3673 1.677637 GCTCCCTTGTACTCCCTCCG 61.678 65.000 0.00 0.00 0.00 4.63
1851 3674 0.325765 AGCTCCCTTGTACTCCCTCC 60.326 60.000 0.00 0.00 0.00 4.30
1852 3675 0.827368 CAGCTCCCTTGTACTCCCTC 59.173 60.000 0.00 0.00 0.00 4.30
1853 3676 0.413832 TCAGCTCCCTTGTACTCCCT 59.586 55.000 0.00 0.00 0.00 4.20
1854 3677 0.537653 GTCAGCTCCCTTGTACTCCC 59.462 60.000 0.00 0.00 0.00 4.30
1855 3678 1.205893 CAGTCAGCTCCCTTGTACTCC 59.794 57.143 0.00 0.00 0.00 3.85
1856 3679 2.171840 TCAGTCAGCTCCCTTGTACTC 58.828 52.381 0.00 0.00 0.00 2.59
1857 3680 2.310779 TCAGTCAGCTCCCTTGTACT 57.689 50.000 0.00 0.00 0.00 2.73
1858 3681 2.497675 TGATCAGTCAGCTCCCTTGTAC 59.502 50.000 0.00 0.00 0.00 2.90
1859 3682 2.762887 CTGATCAGTCAGCTCCCTTGTA 59.237 50.000 14.95 0.00 44.86 2.41
1860 3683 1.554160 CTGATCAGTCAGCTCCCTTGT 59.446 52.381 14.95 0.00 44.86 3.16
1861 3684 2.312722 CTGATCAGTCAGCTCCCTTG 57.687 55.000 14.95 0.00 44.86 3.61
1887 3710 3.479505 TGTTTGTAGTGTGTGTTGTGC 57.520 42.857 0.00 0.00 0.00 4.57
1936 3763 1.398390 CAGCGGGCTTTGACATTACTC 59.602 52.381 0.00 0.00 0.00 2.59
1946 3773 2.730094 CAAAGTGCAGCGGGCTTT 59.270 55.556 5.05 4.25 45.15 3.51
1961 3788 5.738783 GCTTTTATCTGTTCTTTGGTGCCAA 60.739 40.000 0.00 0.00 0.00 4.52
2010 3857 6.545504 TTGTAGACAATTCTTTCAGACTGC 57.454 37.500 0.00 0.00 32.75 4.40
2025 3872 3.370846 CCCATGAATCTGGCTTGTAGACA 60.371 47.826 0.00 0.00 34.77 3.41
2029 3876 2.846206 AGTCCCATGAATCTGGCTTGTA 59.154 45.455 0.00 0.00 34.77 2.41
2037 3884 4.082125 GGTGTTTTCAGTCCCATGAATCT 58.918 43.478 0.00 0.00 38.90 2.40
2041 3888 1.496857 TGGGTGTTTTCAGTCCCATGA 59.503 47.619 0.00 0.00 40.00 3.07
2052 3899 3.681313 GCAGTTGTTGGATTGGGTGTTTT 60.681 43.478 0.00 0.00 0.00 2.43
2054 3901 1.412343 GCAGTTGTTGGATTGGGTGTT 59.588 47.619 0.00 0.00 0.00 3.32
2063 3910 3.368427 CGATAGAGAAGGCAGTTGTTGGA 60.368 47.826 0.00 0.00 39.76 3.53
2067 3914 1.134670 GGCGATAGAGAAGGCAGTTGT 60.135 52.381 0.00 0.00 39.76 3.32
2070 3917 0.752009 TCGGCGATAGAGAAGGCAGT 60.752 55.000 4.99 0.00 39.76 4.40
2078 3925 1.001158 GGTTCCTCTTCGGCGATAGAG 60.001 57.143 27.32 27.32 38.08 2.43
2083 3930 3.387947 GGGGTTCCTCTTCGGCGA 61.388 66.667 4.99 4.99 0.00 5.54
2086 3933 1.527370 GGATGGGGTTCCTCTTCGG 59.473 63.158 0.00 0.00 32.68 4.30
2132 3979 3.129502 CGCCTCTACGGTCCGACA 61.130 66.667 20.51 4.09 34.25 4.35
2133 3980 4.549516 GCGCCTCTACGGTCCGAC 62.550 72.222 20.51 0.00 34.25 4.79
2157 4004 2.419851 GCCAGCATCTGTTCTAGCTCTT 60.420 50.000 0.00 0.00 34.61 2.85
2164 4011 0.694771 TCAAGGCCAGCATCTGTTCT 59.305 50.000 5.01 0.00 0.00 3.01
2175 4022 1.134280 GCTGCTCTAGATTCAAGGCCA 60.134 52.381 5.01 0.00 0.00 5.36
2181 4028 3.538591 CACAATGGCTGCTCTAGATTCA 58.461 45.455 0.00 0.00 0.00 2.57
2185 4032 0.614812 TGCACAATGGCTGCTCTAGA 59.385 50.000 0.00 0.00 35.53 2.43
2205 4052 1.299648 TTCCCACGGAAGATGGCTG 59.700 57.895 0.00 0.00 36.71 4.85
2206 4053 3.820425 TTCCCACGGAAGATGGCT 58.180 55.556 0.00 0.00 36.71 4.75
2216 4063 4.465512 GTGCATGCGCTTCCCACG 62.466 66.667 23.77 0.00 39.64 4.94
2217 4064 4.465512 CGTGCATGCGCTTCCCAC 62.466 66.667 27.32 10.57 39.64 4.61
2239 4086 0.790207 GGTGTGTGTATCTGTGTGCG 59.210 55.000 0.00 0.00 0.00 5.34
2241 4088 1.800586 GCTGGTGTGTGTATCTGTGTG 59.199 52.381 0.00 0.00 0.00 3.82
2242 4089 1.270839 GGCTGGTGTGTGTATCTGTGT 60.271 52.381 0.00 0.00 0.00 3.72
2247 4094 0.744414 ATGCGGCTGGTGTGTGTATC 60.744 55.000 0.00 0.00 0.00 2.24
2249 4096 1.375396 GATGCGGCTGGTGTGTGTA 60.375 57.895 0.00 0.00 0.00 2.90
2278 4125 2.268298 CCTATGTTTTCGGTCGACCAG 58.732 52.381 32.80 24.26 35.14 4.00
2282 4129 3.592059 CTTTCCCTATGTTTTCGGTCGA 58.408 45.455 0.00 0.00 0.00 4.20
2288 4135 3.193479 CCAGTGGCTTTCCCTATGTTTTC 59.807 47.826 0.00 0.00 0.00 2.29
2296 4143 0.772124 TCTTCCCAGTGGCTTTCCCT 60.772 55.000 2.61 0.00 0.00 4.20
2303 4150 0.036388 TGACGATTCTTCCCAGTGGC 60.036 55.000 2.61 0.00 0.00 5.01
2314 4255 4.094212 GCAGCTTCATTCTTTGACGATTC 58.906 43.478 0.00 0.00 32.84 2.52
2320 4261 4.763279 TGATTCTGCAGCTTCATTCTTTGA 59.237 37.500 9.47 0.00 0.00 2.69
2322 4263 4.521639 TGTGATTCTGCAGCTTCATTCTTT 59.478 37.500 17.77 0.00 0.00 2.52
2328 4269 3.538591 CCTATGTGATTCTGCAGCTTCA 58.461 45.455 9.47 11.46 0.00 3.02
2385 4326 0.040958 CTTTGTTCTGCGGTCTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
2386 4327 0.040958 GCTTTGTTCTGCGGTCTGTG 60.041 55.000 0.00 0.00 0.00 3.66
2388 4329 0.514691 GAGCTTTGTTCTGCGGTCTG 59.485 55.000 0.00 0.00 0.00 3.51
2389 4330 0.106708 TGAGCTTTGTTCTGCGGTCT 59.893 50.000 0.00 0.00 0.00 3.85
2450 4391 1.628327 GGGTGGAGGGAGATAGGGTTT 60.628 57.143 0.00 0.00 0.00 3.27
2460 4401 3.003173 CGAGCTTGGGTGGAGGGA 61.003 66.667 0.00 0.00 0.00 4.20
2463 4404 1.078848 CCTTCGAGCTTGGGTGGAG 60.079 63.158 0.00 0.00 0.00 3.86
2467 4408 3.591254 GACGCCTTCGAGCTTGGGT 62.591 63.158 0.00 0.00 39.41 4.51
2507 4448 0.957888 GTTCTTCAGTGGCCAGGAGC 60.958 60.000 5.11 0.00 42.60 4.70
2519 4460 3.924114 TCTTTGGAGTGGTGTTCTTCA 57.076 42.857 0.00 0.00 0.00 3.02
2532 4473 4.651778 CAAGTCCACCACTTATCTTTGGA 58.348 43.478 0.00 0.00 44.14 3.53
2547 4488 1.951209 TCATAGGTCCAGCAAGTCCA 58.049 50.000 0.00 0.00 0.00 4.02
2619 4562 0.184692 TTTGGGTGAGTGGTGATGCA 59.815 50.000 0.00 0.00 0.00 3.96
2654 4597 2.124983 CCATGGAGGCACCGTCTG 60.125 66.667 5.56 0.00 42.61 3.51
2731 4677 3.027787 GCCCCCATCCCAATTCCT 58.972 61.111 0.00 0.00 0.00 3.36
2736 4682 1.794885 TTTCTTCGCCCCCATCCCAA 61.795 55.000 0.00 0.00 0.00 4.12
2748 4695 1.336887 TGGCGAGGTCTCTTTTCTTCG 60.337 52.381 0.00 0.00 36.51 3.79
2750 4697 1.971357 TCTGGCGAGGTCTCTTTTCTT 59.029 47.619 0.00 0.00 0.00 2.52
2778 4725 4.475135 GTGAGCCGCCTTCCTCCC 62.475 72.222 0.00 0.00 0.00 4.30
2817 4764 4.892965 TTGGTTGGCTGCTGCGGT 62.893 61.111 10.62 0.00 40.82 5.68
2821 4768 1.402107 AAACCCTTGGTTGGCTGCTG 61.402 55.000 0.00 0.00 46.20 4.41
2826 4773 3.466881 GGGAAACCCTTGGTTGGC 58.533 61.111 0.00 0.00 46.20 4.52
2847 4794 1.347707 TGGTTGTGTAGGCTTGAGAGG 59.652 52.381 0.00 0.00 0.00 3.69
2848 4795 2.808543 GTTGGTTGTGTAGGCTTGAGAG 59.191 50.000 0.00 0.00 0.00 3.20
2956 5072 3.253432 GGTTCTCGTTGCTTCATTCCTTT 59.747 43.478 0.00 0.00 0.00 3.11
2999 5115 2.803155 CTAGGCAAGCAGGTGCGGAA 62.803 60.000 0.00 0.00 45.91 4.30
3035 5151 4.101448 CCTCACCCTCCCTTGCCG 62.101 72.222 0.00 0.00 0.00 5.69
3127 5243 1.949847 ATGACCTCCTGGACGCTTCG 61.950 60.000 0.00 0.00 37.04 3.79
3146 5262 7.000472 ACTGTGGTAAGTGTAGTACTCTGTTA 59.000 38.462 0.00 0.00 39.18 2.41
3203 5319 8.934507 ATACAACAGAGCTCTTGATAAGTAAC 57.065 34.615 19.91 0.00 0.00 2.50
3211 5567 6.989759 TGTAACAAATACAACAGAGCTCTTGA 59.010 34.615 19.91 6.30 41.52 3.02
3236 5592 7.280205 CGCCTTATTTTTGGAGTACAAGATAGT 59.720 37.037 0.00 0.00 40.82 2.12
3237 5593 7.280205 ACGCCTTATTTTTGGAGTACAAGATAG 59.720 37.037 0.00 0.00 40.82 2.08
3312 5669 8.638873 TCGGTGTTGTAGATATTGACATTCTAT 58.361 33.333 0.00 0.00 0.00 1.98
3313 5670 8.002984 TCGGTGTTGTAGATATTGACATTCTA 57.997 34.615 0.00 0.00 0.00 2.10
3404 5761 7.127186 TGGATCAGAGGGAGTACAAAATTATCA 59.873 37.037 0.00 0.00 0.00 2.15
3417 5774 5.545723 ACCAAGTAATATGGATCAGAGGGAG 59.454 44.000 0.00 0.00 40.56 4.30
3418 5775 5.307976 CACCAAGTAATATGGATCAGAGGGA 59.692 44.000 0.00 0.00 40.56 4.20
3419 5776 5.555017 CACCAAGTAATATGGATCAGAGGG 58.445 45.833 0.00 0.00 40.56 4.30
3420 5777 4.999950 GCACCAAGTAATATGGATCAGAGG 59.000 45.833 0.00 0.00 40.56 3.69
3421 5778 5.614308 TGCACCAAGTAATATGGATCAGAG 58.386 41.667 0.00 0.00 40.56 3.35
3422 5779 5.614308 CTGCACCAAGTAATATGGATCAGA 58.386 41.667 0.00 0.00 40.56 3.27
3423 5780 4.214971 GCTGCACCAAGTAATATGGATCAG 59.785 45.833 0.00 6.93 40.56 2.90
3424 5781 4.136796 GCTGCACCAAGTAATATGGATCA 58.863 43.478 0.00 0.00 40.56 2.92
3425 5782 4.392940 AGCTGCACCAAGTAATATGGATC 58.607 43.478 1.02 0.00 40.56 3.36
3426 5783 4.443978 AGCTGCACCAAGTAATATGGAT 57.556 40.909 1.02 0.00 40.56 3.41
3427 5784 3.931907 AGCTGCACCAAGTAATATGGA 57.068 42.857 1.02 0.00 40.56 3.41
3428 5785 4.989279 AAAGCTGCACCAAGTAATATGG 57.011 40.909 1.02 0.00 43.84 2.74
3429 5786 6.683974 ACTAAAGCTGCACCAAGTAATATG 57.316 37.500 1.02 0.00 0.00 1.78
3430 5787 7.335627 TGTACTAAAGCTGCACCAAGTAATAT 58.664 34.615 1.02 0.00 0.00 1.28
3431 5788 6.703319 TGTACTAAAGCTGCACCAAGTAATA 58.297 36.000 1.02 0.00 0.00 0.98
3432 5789 5.556915 TGTACTAAAGCTGCACCAAGTAAT 58.443 37.500 1.02 0.00 0.00 1.89
3433 5790 4.963373 TGTACTAAAGCTGCACCAAGTAA 58.037 39.130 1.02 0.00 0.00 2.24
3434 5791 4.610605 TGTACTAAAGCTGCACCAAGTA 57.389 40.909 1.02 1.42 0.00 2.24
3435 5792 3.485463 TGTACTAAAGCTGCACCAAGT 57.515 42.857 1.02 2.41 0.00 3.16
3436 5793 3.815401 AGTTGTACTAAAGCTGCACCAAG 59.185 43.478 1.02 0.00 0.00 3.61
3437 5794 3.815809 AGTTGTACTAAAGCTGCACCAA 58.184 40.909 1.02 0.00 0.00 3.67
3438 5795 3.485463 AGTTGTACTAAAGCTGCACCA 57.515 42.857 1.02 0.00 0.00 4.17
3439 5796 4.151867 GTGTAGTTGTACTAAAGCTGCACC 59.848 45.833 1.02 0.00 37.00 5.01
3440 5797 4.989168 AGTGTAGTTGTACTAAAGCTGCAC 59.011 41.667 1.02 8.09 41.05 4.57
3441 5798 5.209818 AGTGTAGTTGTACTAAAGCTGCA 57.790 39.130 1.02 0.00 31.62 4.41
3442 5799 5.107065 CCAAGTGTAGTTGTACTAAAGCTGC 60.107 44.000 0.00 0.00 31.62 5.25
3443 5800 5.989777 ACCAAGTGTAGTTGTACTAAAGCTG 59.010 40.000 0.00 0.00 31.62 4.24
3444 5801 6.170846 ACCAAGTGTAGTTGTACTAAAGCT 57.829 37.500 0.00 0.00 31.62 3.74
3445 5802 5.987347 TGACCAAGTGTAGTTGTACTAAAGC 59.013 40.000 0.00 0.00 31.62 3.51
3446 5803 8.333186 GTTTGACCAAGTGTAGTTGTACTAAAG 58.667 37.037 0.00 0.00 31.62 1.85
3447 5804 8.042515 AGTTTGACCAAGTGTAGTTGTACTAAA 58.957 33.333 0.00 0.00 31.62 1.85
3448 5805 7.558604 AGTTTGACCAAGTGTAGTTGTACTAA 58.441 34.615 0.00 0.00 31.62 2.24
3449 5806 7.116075 AGTTTGACCAAGTGTAGTTGTACTA 57.884 36.000 0.00 0.00 0.00 1.82
3450 5807 5.985911 AGTTTGACCAAGTGTAGTTGTACT 58.014 37.500 0.00 0.00 0.00 2.73
3451 5808 6.673154 AAGTTTGACCAAGTGTAGTTGTAC 57.327 37.500 0.00 0.00 0.00 2.90
3453 5810 8.967664 TTATAAGTTTGACCAAGTGTAGTTGT 57.032 30.769 0.00 0.00 0.00 3.32
3456 5813 9.623000 AGTTTTATAAGTTTGACCAAGTGTAGT 57.377 29.630 0.00 0.00 0.00 2.73
3497 5854 6.708949 TGTCCCGAAATATAAGACATTAAGGC 59.291 38.462 0.00 0.00 32.75 4.35
3560 5918 9.915629 CTAGAGTTGTATCAGTAACTGAGTTTT 57.084 33.333 1.97 0.00 44.08 2.43
3562 5920 8.865420 TCTAGAGTTGTATCAGTAACTGAGTT 57.135 34.615 2.37 2.37 44.08 3.01
3661 6025 5.649782 ATTCCTACAGTGAAAATTGCCAG 57.350 39.130 0.00 0.00 0.00 4.85
3688 6052 8.301720 ACAACATAAAAGGCATCAGCATATATG 58.698 33.333 8.45 8.45 44.61 1.78
3849 6214 6.476378 AGAAAGGAAGTTAAGCTCTAATGCA 58.524 36.000 0.00 0.00 34.99 3.96
3978 6344 4.453480 TGGGACAAATTCCTATGGGATC 57.547 45.455 0.00 0.00 45.09 3.36
3994 6360 2.572104 AGTGTACTGGATTCCTTGGGAC 59.428 50.000 3.95 2.28 0.00 4.46
3998 6364 6.878923 TGAAATGTAGTGTACTGGATTCCTTG 59.121 38.462 3.95 0.00 0.00 3.61
4082 6450 5.034554 TCGCATCAAAGTGTCTTTGATTC 57.965 39.130 25.37 21.49 44.16 2.52
4099 6467 1.533731 CGTACAGGGTTTTGTTCGCAT 59.466 47.619 0.00 0.00 35.62 4.73
4104 6472 2.419667 CGGATCGTACAGGGTTTTGTT 58.580 47.619 0.00 0.00 32.56 2.83
4118 6486 2.588877 GCATGTCCACCCGGATCG 60.589 66.667 0.73 0.00 45.33 3.69
4212 6644 1.412079 AGCAAACAGGGAACAATGCA 58.588 45.000 0.00 0.00 36.30 3.96
4213 6645 2.531522 AAGCAAACAGGGAACAATGC 57.468 45.000 0.00 0.00 0.00 3.56
4266 6698 2.184322 GCCTCGCATCTGTTCGGA 59.816 61.111 0.00 0.00 0.00 4.55
4269 6701 1.742880 TGCAGCCTCGCATCTGTTC 60.743 57.895 0.00 0.00 36.86 3.18
4395 6827 0.725686 CTGACATCAAAGCCGCAGAG 59.274 55.000 0.00 0.00 0.00 3.35
4554 6988 3.806949 AGGGTCAAGTATTTGGAAGCA 57.193 42.857 0.00 0.00 34.97 3.91
4597 7031 3.479489 TGTCTATGCAATGTAGCCATGG 58.521 45.455 7.63 7.63 0.00 3.66
4650 7089 1.024271 GGAGCAACTGCAACAACTCA 58.976 50.000 4.22 0.00 45.16 3.41
4676 7115 6.431234 ACACAAAGGTAGATCTGAAAATGGTC 59.569 38.462 5.18 0.00 0.00 4.02
4677 7116 6.306987 ACACAAAGGTAGATCTGAAAATGGT 58.693 36.000 5.18 0.00 0.00 3.55
4678 7117 6.430925 TGACACAAAGGTAGATCTGAAAATGG 59.569 38.462 5.18 0.00 0.00 3.16
4679 7118 7.439157 TGACACAAAGGTAGATCTGAAAATG 57.561 36.000 5.18 1.95 0.00 2.32
4733 7174 6.562086 GCCTAAAAGCATTTCAAAGACAAACG 60.562 38.462 0.00 0.00 37.28 3.60
4734 7175 6.257630 TGCCTAAAAGCATTTCAAAGACAAAC 59.742 34.615 0.00 0.00 37.28 2.93
4735 7176 6.257630 GTGCCTAAAAGCATTTCAAAGACAAA 59.742 34.615 0.00 0.00 46.24 2.83
4754 7195 2.223386 GCGTTTGTGAAGTTTGTGCCTA 60.223 45.455 0.00 0.00 0.00 3.93
4761 7202 4.814234 TCTATCACTGCGTTTGTGAAGTTT 59.186 37.500 10.27 0.00 45.82 2.66
4770 7211 1.710013 CACGGTCTATCACTGCGTTT 58.290 50.000 0.00 0.00 34.19 3.60
4857 7298 6.161855 ACGTCCTTCATATTAGCTTCATCA 57.838 37.500 0.00 0.00 0.00 3.07
4887 7328 1.059098 AGCCAATGAGTGTGTCCTCA 58.941 50.000 0.00 0.00 45.06 3.86
4966 7407 2.601240 TTGAATCACCTGCATCCCAA 57.399 45.000 0.00 0.00 0.00 4.12
5331 7773 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
5332 7774 3.799137 TTGCGACGAGTAATTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
5333 7775 4.815040 TTTTGCGACGAGTAATTTGGAA 57.185 36.364 0.00 0.00 0.00 3.53
5334 7776 4.815040 TTTTTGCGACGAGTAATTTGGA 57.185 36.364 0.00 0.00 0.00 3.53
5335 7777 5.150683 TCATTTTTGCGACGAGTAATTTGG 58.849 37.500 0.00 0.00 0.00 3.28
5336 7778 6.667981 TTCATTTTTGCGACGAGTAATTTG 57.332 33.333 0.00 0.00 0.00 2.32
5337 7779 6.861055 ACATTCATTTTTGCGACGAGTAATTT 59.139 30.769 0.00 0.00 0.00 1.82
5338 7780 6.378582 ACATTCATTTTTGCGACGAGTAATT 58.621 32.000 0.00 0.00 0.00 1.40
5339 7781 5.938322 ACATTCATTTTTGCGACGAGTAAT 58.062 33.333 0.00 0.00 0.00 1.89
5340 7782 5.351233 ACATTCATTTTTGCGACGAGTAA 57.649 34.783 0.00 0.00 0.00 2.24
5341 7783 6.533723 AGATACATTCATTTTTGCGACGAGTA 59.466 34.615 0.00 0.00 0.00 2.59
5342 7784 3.896648 ACATTCATTTTTGCGACGAGT 57.103 38.095 0.00 0.00 0.00 4.18
5343 7785 5.799960 AGATACATTCATTTTTGCGACGAG 58.200 37.500 0.00 0.00 0.00 4.18
5344 7786 5.794687 AGATACATTCATTTTTGCGACGA 57.205 34.783 0.00 0.00 0.00 4.20
5345 7787 6.933130 TCTAGATACATTCATTTTTGCGACG 58.067 36.000 0.00 0.00 0.00 5.12
5346 7788 8.391106 AGTTCTAGATACATTCATTTTTGCGAC 58.609 33.333 0.00 0.00 0.00 5.19
5347 7789 8.492673 AGTTCTAGATACATTCATTTTTGCGA 57.507 30.769 0.00 0.00 0.00 5.10
5376 7818 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
5377 7819 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
5378 7820 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
5379 7821 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
5380 7822 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
5381 7823 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
5382 7824 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
5383 7825 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
5384 7826 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
5385 7827 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
5386 7828 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
5387 7829 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
5388 7830 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
5389 7831 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
5390 7832 5.234329 CGAATTACTTGTCGCAAGTATGGAT 59.766 40.000 23.59 15.77 33.27 3.41
5391 7833 4.565166 CGAATTACTTGTCGCAAGTATGGA 59.435 41.667 23.59 14.66 33.27 3.41
5392 7834 4.260212 CCGAATTACTTGTCGCAAGTATGG 60.260 45.833 23.59 19.57 35.93 2.74
5393 7835 4.565166 TCCGAATTACTTGTCGCAAGTATG 59.435 41.667 23.59 16.51 35.93 2.39
5394 7836 4.751060 TCCGAATTACTTGTCGCAAGTAT 58.249 39.130 23.59 14.96 35.93 2.12
5395 7837 4.177165 TCCGAATTACTTGTCGCAAGTA 57.823 40.909 20.95 20.95 35.93 2.24
5396 7838 3.034721 TCCGAATTACTTGTCGCAAGT 57.965 42.857 22.53 22.53 35.93 3.16
5397 7839 3.720920 CGTTCCGAATTACTTGTCGCAAG 60.721 47.826 15.16 15.16 35.93 4.01
5398 7840 2.156117 CGTTCCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 35.93 4.85
5399 7841 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
5400 7842 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
5401 7843 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
5402 7844 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5403 7845 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5404 7846 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5405 7847 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5406 7848 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
5407 7849 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
5408 7850 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
5409 7851 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
5410 7852 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
5411 7853 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
5412 7854 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
5413 7855 0.172803 CTTGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
5414 7856 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
5415 7857 0.108281 GGCTTGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
5416 7858 0.544595 AGGCTTGTACTCCCTCCGTT 60.545 55.000 0.00 0.00 0.00 4.44
5417 7859 0.544595 AAGGCTTGTACTCCCTCCGT 60.545 55.000 0.00 0.00 0.00 4.69
5418 7860 0.613777 AAAGGCTTGTACTCCCTCCG 59.386 55.000 0.00 0.00 0.00 4.63
5419 7861 1.351350 ACAAAGGCTTGTACTCCCTCC 59.649 52.381 0.00 0.00 44.14 4.30
5420 7862 2.861147 ACAAAGGCTTGTACTCCCTC 57.139 50.000 0.00 0.00 44.14 4.30
5587 8029 5.132897 TGTGTGGATTTGGAATAAAGCAC 57.867 39.130 0.00 0.00 0.00 4.40
5928 8370 0.320771 GTGTGGAGACCTGCGTCATT 60.321 55.000 0.00 0.00 41.87 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.