Multiple sequence alignment - TraesCS1D01G166000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G166000 chr1D 100.000 2819 0 0 1 2819 237142683 237145501 0.000000e+00 5206.0
1 TraesCS1D01G166000 chr1D 100.000 412 0 0 3088 3499 237145770 237146181 0.000000e+00 761.0
2 TraesCS1D01G166000 chr1D 97.035 371 11 0 1 371 29992656 29993026 2.970000e-175 625.0
3 TraesCS1D01G166000 chr1A 96.726 2230 59 3 500 2724 308569413 308571633 0.000000e+00 3701.0
4 TraesCS1D01G166000 chr1A 92.067 416 24 6 3088 3499 308571673 308572083 8.420000e-161 577.0
5 TraesCS1D01G166000 chr1A 92.663 368 26 1 4 371 397750934 397750568 2.390000e-146 529.0
6 TraesCS1D01G166000 chr1A 87.121 132 2 5 368 484 308569298 308569429 6.090000e-28 135.0
7 TraesCS1D01G166000 chr1B 95.616 2304 54 10 420 2713 342650187 342647921 0.000000e+00 3651.0
8 TraesCS1D01G166000 chr1B 93.976 415 22 2 3088 3499 342647907 342647493 2.970000e-175 625.0
9 TraesCS1D01G166000 chr1B 86.828 372 44 4 1 370 319190586 319190954 9.040000e-111 411.0
10 TraesCS1D01G166000 chr1B 86.792 371 45 3 1 370 321256937 321257304 9.040000e-111 411.0
11 TraesCS1D01G166000 chr1B 100.000 39 0 0 373 411 342650216 342650178 4.840000e-09 73.1
12 TraesCS1D01G166000 chr4D 96.486 370 12 1 1 370 98522804 98523172 8.300000e-171 610.0
13 TraesCS1D01G166000 chr7D 95.652 368 16 0 1 368 609538764 609539131 3.010000e-165 592.0
14 TraesCS1D01G166000 chr7D 95.405 370 15 2 1 370 5453532 5453899 3.890000e-164 588.0
15 TraesCS1D01G166000 chr7D 94.565 368 20 0 1 368 609596480 609596847 1.410000e-158 569.0
16 TraesCS1D01G166000 chr7D 97.980 99 2 0 2721 2819 615266609 615266707 4.640000e-39 172.0
17 TraesCS1D01G166000 chr2B 88.919 370 38 2 1 370 9577830 9578196 1.480000e-123 453.0
18 TraesCS1D01G166000 chr2B 86.275 102 14 0 1786 1887 274381185 274381286 1.030000e-20 111.0
19 TraesCS1D01G166000 chr5A 97.115 104 3 0 2716 2819 113851836 113851939 3.590000e-40 176.0
20 TraesCS1D01G166000 chr5A 93.636 110 7 0 2710 2819 362173225 362173334 7.770000e-37 165.0
21 TraesCS1D01G166000 chr5A 77.622 143 17 12 2561 2702 707723993 707724121 4.840000e-09 73.1
22 TraesCS1D01G166000 chr5A 77.953 127 15 10 2576 2702 551483554 551483441 2.250000e-07 67.6
23 TraesCS1D01G166000 chr4A 98.969 97 1 0 2722 2818 570990458 570990362 1.290000e-39 174.0
24 TraesCS1D01G166000 chr4A 87.255 102 13 0 1786 1887 374413744 374413845 2.210000e-22 117.0
25 TraesCS1D01G166000 chr6D 97.980 99 2 0 2721 2819 435974348 435974446 4.640000e-39 172.0
26 TraesCS1D01G166000 chr6D 97.030 101 3 0 2718 2818 343556374 343556274 1.670000e-38 171.0
27 TraesCS1D01G166000 chr6A 97.059 102 3 0 2718 2819 499205007 499205108 4.640000e-39 172.0
28 TraesCS1D01G166000 chr6A 79.130 115 24 0 1510 1624 123372118 123372004 2.900000e-11 80.5
29 TraesCS1D01G166000 chr3D 96.190 105 4 0 2715 2819 606889280 606889384 4.640000e-39 172.0
30 TraesCS1D01G166000 chr3D 85.294 102 15 0 1786 1887 146185710 146185609 4.780000e-19 106.0
31 TraesCS1D01G166000 chr5B 95.283 106 4 1 2714 2819 281433899 281433795 2.160000e-37 167.0
32 TraesCS1D01G166000 chr2D 88.235 102 12 0 1786 1887 119287273 119287172 4.740000e-24 122.0
33 TraesCS1D01G166000 chr7B 100.000 28 0 0 1774 1801 86672197 86672170 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G166000 chr1D 237142683 237146181 3498 False 2983.5 5206 100.000000 1 3499 2 chr1D.!!$F2 3498
1 TraesCS1D01G166000 chr1A 308569298 308572083 2785 False 1471.0 3701 91.971333 368 3499 3 chr1A.!!$F1 3131
2 TraesCS1D01G166000 chr1B 342647493 342650216 2723 True 1449.7 3651 96.530667 373 3499 3 chr1B.!!$R1 3126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034896 AACAAGTCGCTGGTAGTGGG 59.965 55.0 0.0 0.0 0.00 4.61 F
255 256 0.036010 ATGAGTTTGACCTCCAGCCG 60.036 55.0 0.0 0.0 0.00 5.52 F
258 259 0.036010 AGTTTGACCTCCAGCCGATG 60.036 55.0 0.0 0.0 0.00 3.84 F
265 266 0.109342 CCTCCAGCCGATGCCTAATT 59.891 55.0 0.0 0.0 38.69 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1533 1.126488 GCTCCATCTCCATCTCCACA 58.874 55.000 0.00 0.0 0.0 4.17 R
1784 1807 1.278937 CGATGATCCGCTCGTACGT 59.721 57.895 16.05 0.0 0.0 3.57 R
2221 2246 1.593209 GTCGTTGTTGCCGGAGTCA 60.593 57.895 5.05 0.0 0.0 3.41 R
2715 2740 0.108281 GAACGGAGGGAGTACAAGCC 60.108 60.000 0.00 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.663695 TGTAGGCTAAAAGCGATGCC 58.336 50.000 0.00 0.00 43.62 4.40
24 25 2.584492 GGCTAAAAGCGATGCCAAAT 57.416 45.000 0.00 0.00 43.62 2.32
25 26 2.892374 GGCTAAAAGCGATGCCAAATT 58.108 42.857 0.00 0.00 43.62 1.82
26 27 2.860136 GGCTAAAAGCGATGCCAAATTC 59.140 45.455 0.00 0.00 43.62 2.17
27 28 3.510719 GCTAAAAGCGATGCCAAATTCA 58.489 40.909 0.00 0.00 0.00 2.57
28 29 3.304293 GCTAAAAGCGATGCCAAATTCAC 59.696 43.478 0.00 0.00 0.00 3.18
29 30 3.665745 AAAAGCGATGCCAAATTCACT 57.334 38.095 0.00 0.00 0.00 3.41
30 31 3.665745 AAAGCGATGCCAAATTCACTT 57.334 38.095 0.00 0.00 0.00 3.16
31 32 3.665745 AAGCGATGCCAAATTCACTTT 57.334 38.095 0.00 0.00 0.00 2.66
32 33 3.665745 AGCGATGCCAAATTCACTTTT 57.334 38.095 0.00 0.00 0.00 2.27
33 34 3.319755 AGCGATGCCAAATTCACTTTTG 58.680 40.909 0.00 0.00 36.55 2.44
34 35 3.005684 AGCGATGCCAAATTCACTTTTGA 59.994 39.130 0.00 0.00 38.58 2.69
35 36 3.928375 GCGATGCCAAATTCACTTTTGAT 59.072 39.130 0.00 0.00 38.58 2.57
36 37 4.389687 GCGATGCCAAATTCACTTTTGATT 59.610 37.500 0.00 0.00 38.58 2.57
37 38 5.445010 GCGATGCCAAATTCACTTTTGATTC 60.445 40.000 0.00 0.00 38.58 2.52
38 39 5.634439 CGATGCCAAATTCACTTTTGATTCA 59.366 36.000 0.00 0.00 38.58 2.57
39 40 6.311935 CGATGCCAAATTCACTTTTGATTCAT 59.688 34.615 0.00 0.57 38.58 2.57
40 41 7.148540 CGATGCCAAATTCACTTTTGATTCATT 60.149 33.333 0.00 0.00 38.58 2.57
41 42 7.804843 TGCCAAATTCACTTTTGATTCATTT 57.195 28.000 0.00 0.00 38.58 2.32
42 43 7.640852 TGCCAAATTCACTTTTGATTCATTTG 58.359 30.769 0.00 0.00 38.58 2.32
44 45 7.079475 CCAAATTCACTTTTGATTCATTTGGC 58.921 34.615 12.85 0.00 43.82 4.52
45 46 7.255173 CCAAATTCACTTTTGATTCATTTGGCA 60.255 33.333 12.85 0.00 43.82 4.92
46 47 6.790285 ATTCACTTTTGATTCATTTGGCAC 57.210 33.333 0.00 0.00 0.00 5.01
47 48 4.630111 TCACTTTTGATTCATTTGGCACC 58.370 39.130 0.00 0.00 0.00 5.01
48 49 3.429543 CACTTTTGATTCATTTGGCACCG 59.570 43.478 0.00 0.00 0.00 4.94
49 50 3.320541 ACTTTTGATTCATTTGGCACCGA 59.679 39.130 0.00 0.00 0.00 4.69
50 51 4.021192 ACTTTTGATTCATTTGGCACCGAT 60.021 37.500 0.00 0.00 0.00 4.18
51 52 3.507103 TTGATTCATTTGGCACCGATG 57.493 42.857 0.00 0.00 0.00 3.84
60 61 2.124151 GCACCGATGCCCTCCATT 60.124 61.111 0.00 0.00 46.97 3.16
61 62 2.484062 GCACCGATGCCCTCCATTG 61.484 63.158 0.00 0.00 46.97 2.82
62 63 1.077501 CACCGATGCCCTCCATTGT 60.078 57.895 0.00 0.00 34.08 2.71
63 64 1.097547 CACCGATGCCCTCCATTGTC 61.098 60.000 0.00 0.00 34.08 3.18
64 65 1.526917 CCGATGCCCTCCATTGTCC 60.527 63.158 0.00 0.00 34.08 4.02
65 66 1.224315 CGATGCCCTCCATTGTCCA 59.776 57.895 0.00 0.00 33.29 4.02
66 67 0.816825 CGATGCCCTCCATTGTCCAG 60.817 60.000 0.00 0.00 33.29 3.86
67 68 1.076485 ATGCCCTCCATTGTCCAGC 60.076 57.895 0.00 0.00 0.00 4.85
68 69 1.578215 ATGCCCTCCATTGTCCAGCT 61.578 55.000 0.00 0.00 0.00 4.24
69 70 0.913934 TGCCCTCCATTGTCCAGCTA 60.914 55.000 0.00 0.00 0.00 3.32
70 71 0.179034 GCCCTCCATTGTCCAGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
71 72 1.207791 CCCTCCATTGTCCAGCTAGT 58.792 55.000 0.00 0.00 0.00 2.57
72 73 1.134280 CCCTCCATTGTCCAGCTAGTG 60.134 57.143 0.00 0.00 0.00 2.74
73 74 1.661341 CTCCATTGTCCAGCTAGTGC 58.339 55.000 0.00 0.00 40.05 4.40
74 75 0.253044 TCCATTGTCCAGCTAGTGCC 59.747 55.000 0.00 0.00 40.80 5.01
75 76 0.035152 CCATTGTCCAGCTAGTGCCA 60.035 55.000 0.00 0.00 40.80 4.92
76 77 1.409241 CCATTGTCCAGCTAGTGCCAT 60.409 52.381 0.00 0.00 40.80 4.40
77 78 2.158769 CCATTGTCCAGCTAGTGCCATA 60.159 50.000 0.00 0.00 40.80 2.74
78 79 3.544684 CATTGTCCAGCTAGTGCCATAA 58.455 45.455 0.00 0.00 40.80 1.90
79 80 3.931907 TTGTCCAGCTAGTGCCATAAT 57.068 42.857 0.00 0.00 40.80 1.28
80 81 3.931907 TGTCCAGCTAGTGCCATAATT 57.068 42.857 0.00 0.00 40.80 1.40
81 82 4.235079 TGTCCAGCTAGTGCCATAATTT 57.765 40.909 0.00 0.00 40.80 1.82
82 83 4.599041 TGTCCAGCTAGTGCCATAATTTT 58.401 39.130 0.00 0.00 40.80 1.82
83 84 5.016173 TGTCCAGCTAGTGCCATAATTTTT 58.984 37.500 0.00 0.00 40.80 1.94
101 102 2.060050 TTTTTCAAGGAACCGGAGCA 57.940 45.000 9.46 0.00 0.00 4.26
102 103 2.286365 TTTTCAAGGAACCGGAGCAT 57.714 45.000 9.46 0.00 0.00 3.79
103 104 1.821216 TTTCAAGGAACCGGAGCATC 58.179 50.000 9.46 0.00 0.00 3.91
104 105 0.984230 TTCAAGGAACCGGAGCATCT 59.016 50.000 9.46 0.00 33.73 2.90
105 106 1.860641 TCAAGGAACCGGAGCATCTA 58.139 50.000 9.46 0.00 33.73 1.98
106 107 1.480954 TCAAGGAACCGGAGCATCTAC 59.519 52.381 9.46 0.00 33.73 2.59
107 108 1.482593 CAAGGAACCGGAGCATCTACT 59.517 52.381 9.46 0.00 33.73 2.57
108 109 1.867363 AGGAACCGGAGCATCTACTT 58.133 50.000 9.46 0.00 33.73 2.24
109 110 1.482593 AGGAACCGGAGCATCTACTTG 59.517 52.381 9.46 0.00 33.73 3.16
110 111 1.291132 GAACCGGAGCATCTACTTGC 58.709 55.000 9.46 0.00 43.09 4.01
119 120 1.506493 CATCTACTTGCTCCGATGCC 58.494 55.000 0.00 0.00 0.00 4.40
120 121 1.123077 ATCTACTTGCTCCGATGCCA 58.877 50.000 0.00 0.00 0.00 4.92
121 122 0.175760 TCTACTTGCTCCGATGCCAC 59.824 55.000 0.00 0.00 0.00 5.01
122 123 0.108186 CTACTTGCTCCGATGCCACA 60.108 55.000 0.00 0.00 0.00 4.17
123 124 0.323302 TACTTGCTCCGATGCCACAA 59.677 50.000 0.00 0.00 0.00 3.33
124 125 1.237285 ACTTGCTCCGATGCCACAAC 61.237 55.000 0.00 0.00 0.00 3.32
125 126 1.926511 CTTGCTCCGATGCCACAACC 61.927 60.000 0.00 0.00 0.00 3.77
126 127 2.359850 GCTCCGATGCCACAACCA 60.360 61.111 0.00 0.00 0.00 3.67
127 128 1.971167 GCTCCGATGCCACAACCAA 60.971 57.895 0.00 0.00 0.00 3.67
128 129 1.875963 CTCCGATGCCACAACCAAC 59.124 57.895 0.00 0.00 0.00 3.77
129 130 0.888736 CTCCGATGCCACAACCAACA 60.889 55.000 0.00 0.00 0.00 3.33
130 131 0.466372 TCCGATGCCACAACCAACAA 60.466 50.000 0.00 0.00 0.00 2.83
131 132 0.387202 CCGATGCCACAACCAACAAA 59.613 50.000 0.00 0.00 0.00 2.83
132 133 1.602668 CCGATGCCACAACCAACAAAG 60.603 52.381 0.00 0.00 0.00 2.77
133 134 1.501169 GATGCCACAACCAACAAAGC 58.499 50.000 0.00 0.00 0.00 3.51
134 135 0.829333 ATGCCACAACCAACAAAGCA 59.171 45.000 0.00 0.00 0.00 3.91
135 136 0.610174 TGCCACAACCAACAAAGCAA 59.390 45.000 0.00 0.00 0.00 3.91
136 137 1.209019 TGCCACAACCAACAAAGCAAT 59.791 42.857 0.00 0.00 0.00 3.56
137 138 2.432146 TGCCACAACCAACAAAGCAATA 59.568 40.909 0.00 0.00 0.00 1.90
138 139 3.118629 TGCCACAACCAACAAAGCAATAA 60.119 39.130 0.00 0.00 0.00 1.40
139 140 3.873952 GCCACAACCAACAAAGCAATAAA 59.126 39.130 0.00 0.00 0.00 1.40
140 141 4.260579 GCCACAACCAACAAAGCAATAAAC 60.261 41.667 0.00 0.00 0.00 2.01
141 142 5.115480 CCACAACCAACAAAGCAATAAACT 58.885 37.500 0.00 0.00 0.00 2.66
142 143 6.276847 CCACAACCAACAAAGCAATAAACTA 58.723 36.000 0.00 0.00 0.00 2.24
143 144 6.758886 CCACAACCAACAAAGCAATAAACTAA 59.241 34.615 0.00 0.00 0.00 2.24
144 145 7.042791 CCACAACCAACAAAGCAATAAACTAAG 60.043 37.037 0.00 0.00 0.00 2.18
145 146 6.478673 ACAACCAACAAAGCAATAAACTAAGC 59.521 34.615 0.00 0.00 0.00 3.09
146 147 5.538118 ACCAACAAAGCAATAAACTAAGCC 58.462 37.500 0.00 0.00 0.00 4.35
147 148 5.304357 ACCAACAAAGCAATAAACTAAGCCT 59.696 36.000 0.00 0.00 0.00 4.58
148 149 5.634859 CCAACAAAGCAATAAACTAAGCCTG 59.365 40.000 0.00 0.00 0.00 4.85
149 150 6.215845 CAACAAAGCAATAAACTAAGCCTGT 58.784 36.000 0.00 0.00 0.00 4.00
150 151 6.013842 ACAAAGCAATAAACTAAGCCTGTC 57.986 37.500 0.00 0.00 0.00 3.51
151 152 5.534654 ACAAAGCAATAAACTAAGCCTGTCA 59.465 36.000 0.00 0.00 0.00 3.58
152 153 5.629079 AAGCAATAAACTAAGCCTGTCAC 57.371 39.130 0.00 0.00 0.00 3.67
153 154 4.911390 AGCAATAAACTAAGCCTGTCACT 58.089 39.130 0.00 0.00 0.00 3.41
154 155 4.938226 AGCAATAAACTAAGCCTGTCACTC 59.062 41.667 0.00 0.00 0.00 3.51
155 156 4.695455 GCAATAAACTAAGCCTGTCACTCA 59.305 41.667 0.00 0.00 0.00 3.41
156 157 5.355350 GCAATAAACTAAGCCTGTCACTCAT 59.645 40.000 0.00 0.00 0.00 2.90
157 158 6.676456 GCAATAAACTAAGCCTGTCACTCATG 60.676 42.308 0.00 0.00 0.00 3.07
158 159 3.340814 AACTAAGCCTGTCACTCATGG 57.659 47.619 0.00 0.00 0.00 3.66
159 160 1.556911 ACTAAGCCTGTCACTCATGGG 59.443 52.381 0.00 0.00 0.00 4.00
160 161 1.833630 CTAAGCCTGTCACTCATGGGA 59.166 52.381 0.00 0.00 0.00 4.37
161 162 1.067295 AAGCCTGTCACTCATGGGAA 58.933 50.000 0.00 0.00 0.00 3.97
162 163 0.617413 AGCCTGTCACTCATGGGAAG 59.383 55.000 0.00 0.00 0.00 3.46
163 164 0.615331 GCCTGTCACTCATGGGAAGA 59.385 55.000 0.00 0.00 0.00 2.87
164 165 1.003580 GCCTGTCACTCATGGGAAGAA 59.996 52.381 0.00 0.00 0.00 2.52
165 166 2.704572 CCTGTCACTCATGGGAAGAAC 58.295 52.381 0.00 0.00 0.00 3.01
166 167 2.616510 CCTGTCACTCATGGGAAGAACC 60.617 54.545 0.00 0.00 38.08 3.62
167 168 1.001974 TGTCACTCATGGGAAGAACCG 59.998 52.381 0.00 0.00 40.11 4.44
168 169 0.613260 TCACTCATGGGAAGAACCGG 59.387 55.000 0.00 0.00 40.11 5.28
169 170 1.026718 CACTCATGGGAAGAACCGGC 61.027 60.000 0.00 0.00 40.11 6.13
170 171 1.201429 ACTCATGGGAAGAACCGGCT 61.201 55.000 0.00 0.00 40.11 5.52
171 172 0.745845 CTCATGGGAAGAACCGGCTG 60.746 60.000 0.00 0.00 40.11 4.85
172 173 1.002134 CATGGGAAGAACCGGCTGT 60.002 57.895 0.00 0.00 40.11 4.40
173 174 1.002134 ATGGGAAGAACCGGCTGTG 60.002 57.895 0.00 0.00 40.11 3.66
174 175 1.488705 ATGGGAAGAACCGGCTGTGA 61.489 55.000 0.00 0.00 40.11 3.58
175 176 1.376037 GGGAAGAACCGGCTGTGAG 60.376 63.158 0.00 0.00 40.11 3.51
176 177 2.035442 GGAAGAACCGGCTGTGAGC 61.035 63.158 0.00 0.00 41.46 4.26
185 186 4.481195 GCTGTGAGCCAGGAACAA 57.519 55.556 0.00 0.00 41.81 2.83
186 187 2.251600 GCTGTGAGCCAGGAACAAG 58.748 57.895 0.00 0.00 41.81 3.16
187 188 0.536006 GCTGTGAGCCAGGAACAAGT 60.536 55.000 0.00 0.00 41.81 3.16
188 189 1.517242 CTGTGAGCCAGGAACAAGTC 58.483 55.000 0.00 0.00 37.54 3.01
189 190 0.249868 TGTGAGCCAGGAACAAGTCG 60.250 55.000 0.00 0.00 0.00 4.18
190 191 1.301716 TGAGCCAGGAACAAGTCGC 60.302 57.895 0.00 0.00 0.00 5.19
191 192 1.004440 GAGCCAGGAACAAGTCGCT 60.004 57.895 0.00 0.00 0.00 4.93
192 193 1.294659 GAGCCAGGAACAAGTCGCTG 61.295 60.000 0.00 0.00 0.00 5.18
193 194 2.328099 GCCAGGAACAAGTCGCTGG 61.328 63.158 0.00 0.00 42.90 4.85
194 195 1.071471 CCAGGAACAAGTCGCTGGT 59.929 57.895 0.00 0.00 38.73 4.00
195 196 0.320374 CCAGGAACAAGTCGCTGGTA 59.680 55.000 0.00 0.00 38.73 3.25
196 197 1.673033 CCAGGAACAAGTCGCTGGTAG 60.673 57.143 0.00 0.00 38.73 3.18
197 198 1.000955 CAGGAACAAGTCGCTGGTAGT 59.999 52.381 0.00 0.00 0.00 2.73
198 199 1.000955 AGGAACAAGTCGCTGGTAGTG 59.999 52.381 0.00 0.00 0.00 2.74
199 200 1.429463 GAACAAGTCGCTGGTAGTGG 58.571 55.000 0.00 0.00 0.00 4.00
200 201 0.034896 AACAAGTCGCTGGTAGTGGG 59.965 55.000 0.00 0.00 0.00 4.61
201 202 1.079127 CAAGTCGCTGGTAGTGGGG 60.079 63.158 0.00 0.00 0.00 4.96
202 203 2.955881 AAGTCGCTGGTAGTGGGGC 61.956 63.158 0.00 0.00 0.00 5.80
203 204 3.702048 GTCGCTGGTAGTGGGGCA 61.702 66.667 0.00 0.00 0.00 5.36
204 205 2.925706 TCGCTGGTAGTGGGGCAA 60.926 61.111 0.00 0.00 0.00 4.52
205 206 2.746277 CGCTGGTAGTGGGGCAAC 60.746 66.667 0.00 0.00 0.00 4.17
217 218 4.438346 GGCAACCGTCGCTGATAT 57.562 55.556 0.00 0.00 0.00 1.63
218 219 3.580904 GGCAACCGTCGCTGATATA 57.419 52.632 0.00 0.00 0.00 0.86
219 220 2.080286 GGCAACCGTCGCTGATATAT 57.920 50.000 0.00 0.00 0.00 0.86
220 221 3.226346 GGCAACCGTCGCTGATATATA 57.774 47.619 0.00 0.00 0.00 0.86
221 222 3.782046 GGCAACCGTCGCTGATATATAT 58.218 45.455 0.00 0.00 0.00 0.86
222 223 4.928601 GGCAACCGTCGCTGATATATATA 58.071 43.478 0.00 0.00 0.00 0.86
223 224 4.738740 GGCAACCGTCGCTGATATATATAC 59.261 45.833 0.00 0.00 0.00 1.47
224 225 5.450137 GGCAACCGTCGCTGATATATATACT 60.450 44.000 0.00 0.00 0.00 2.12
225 226 6.238566 GGCAACCGTCGCTGATATATATACTA 60.239 42.308 0.00 0.00 0.00 1.82
226 227 6.851837 GCAACCGTCGCTGATATATATACTAG 59.148 42.308 0.00 0.00 0.00 2.57
227 228 7.466996 GCAACCGTCGCTGATATATATACTAGT 60.467 40.741 0.00 0.00 0.00 2.57
228 229 8.396390 CAACCGTCGCTGATATATATACTAGTT 58.604 37.037 0.00 0.00 0.00 2.24
229 230 8.503458 ACCGTCGCTGATATATATACTAGTTT 57.497 34.615 0.00 0.00 0.00 2.66
230 231 9.605275 ACCGTCGCTGATATATATACTAGTTTA 57.395 33.333 0.00 0.00 0.00 2.01
251 252 8.768397 AGTTTATATGTATGAGTTTGACCTCCA 58.232 33.333 0.00 0.00 0.00 3.86
252 253 9.046296 GTTTATATGTATGAGTTTGACCTCCAG 57.954 37.037 0.00 0.00 0.00 3.86
253 254 3.334583 TGTATGAGTTTGACCTCCAGC 57.665 47.619 0.00 0.00 0.00 4.85
254 255 2.027192 TGTATGAGTTTGACCTCCAGCC 60.027 50.000 0.00 0.00 0.00 4.85
255 256 0.036010 ATGAGTTTGACCTCCAGCCG 60.036 55.000 0.00 0.00 0.00 5.52
256 257 1.118965 TGAGTTTGACCTCCAGCCGA 61.119 55.000 0.00 0.00 0.00 5.54
257 258 0.250513 GAGTTTGACCTCCAGCCGAT 59.749 55.000 0.00 0.00 0.00 4.18
258 259 0.036010 AGTTTGACCTCCAGCCGATG 60.036 55.000 0.00 0.00 0.00 3.84
259 260 1.377202 TTTGACCTCCAGCCGATGC 60.377 57.895 0.00 0.00 37.95 3.91
260 261 2.819984 TTTGACCTCCAGCCGATGCC 62.820 60.000 0.00 0.00 38.69 4.40
261 262 3.474570 GACCTCCAGCCGATGCCT 61.475 66.667 0.00 0.00 38.69 4.75
262 263 2.041922 ACCTCCAGCCGATGCCTA 60.042 61.111 0.00 0.00 38.69 3.93
263 264 1.686325 GACCTCCAGCCGATGCCTAA 61.686 60.000 0.00 0.00 38.69 2.69
264 265 1.056700 ACCTCCAGCCGATGCCTAAT 61.057 55.000 0.00 0.00 38.69 1.73
265 266 0.109342 CCTCCAGCCGATGCCTAATT 59.891 55.000 0.00 0.00 38.69 1.40
266 267 1.517242 CTCCAGCCGATGCCTAATTC 58.483 55.000 0.00 0.00 38.69 2.17
267 268 1.071385 CTCCAGCCGATGCCTAATTCT 59.929 52.381 0.00 0.00 38.69 2.40
268 269 1.490490 TCCAGCCGATGCCTAATTCTT 59.510 47.619 0.00 0.00 38.69 2.52
269 270 2.092429 TCCAGCCGATGCCTAATTCTTT 60.092 45.455 0.00 0.00 38.69 2.52
270 271 2.291741 CCAGCCGATGCCTAATTCTTTC 59.708 50.000 0.00 0.00 38.69 2.62
271 272 2.945008 CAGCCGATGCCTAATTCTTTCA 59.055 45.455 0.00 0.00 38.69 2.69
272 273 2.945668 AGCCGATGCCTAATTCTTTCAC 59.054 45.455 0.00 0.00 38.69 3.18
273 274 2.682856 GCCGATGCCTAATTCTTTCACA 59.317 45.455 0.00 0.00 0.00 3.58
274 275 3.242870 GCCGATGCCTAATTCTTTCACAG 60.243 47.826 0.00 0.00 0.00 3.66
275 276 3.941483 CCGATGCCTAATTCTTTCACAGT 59.059 43.478 0.00 0.00 0.00 3.55
276 277 4.201851 CCGATGCCTAATTCTTTCACAGTG 60.202 45.833 0.00 0.00 0.00 3.66
277 278 4.393062 CGATGCCTAATTCTTTCACAGTGT 59.607 41.667 0.00 0.00 0.00 3.55
278 279 5.633830 ATGCCTAATTCTTTCACAGTGTG 57.366 39.130 17.53 17.53 34.45 3.82
279 280 3.253188 TGCCTAATTCTTTCACAGTGTGC 59.747 43.478 18.80 2.66 32.98 4.57
280 281 3.667960 GCCTAATTCTTTCACAGTGTGCG 60.668 47.826 18.80 9.24 32.98 5.34
281 282 3.120199 CCTAATTCTTTCACAGTGTGCGG 60.120 47.826 18.80 10.42 32.98 5.69
282 283 1.238439 ATTCTTTCACAGTGTGCGGG 58.762 50.000 18.80 10.08 32.98 6.13
283 284 1.444119 TTCTTTCACAGTGTGCGGGC 61.444 55.000 18.80 0.00 32.98 6.13
284 285 3.240606 CTTTCACAGTGTGCGGGCG 62.241 63.158 18.80 1.39 32.98 6.13
292 293 4.627801 TGTGCGGGCGGTGCTAAA 62.628 61.111 0.00 0.00 0.00 1.85
293 294 3.131478 GTGCGGGCGGTGCTAAAT 61.131 61.111 0.00 0.00 0.00 1.40
294 295 1.816259 GTGCGGGCGGTGCTAAATA 60.816 57.895 0.00 0.00 0.00 1.40
295 296 1.147376 TGCGGGCGGTGCTAAATAT 59.853 52.632 0.00 0.00 0.00 1.28
296 297 0.393448 TGCGGGCGGTGCTAAATATA 59.607 50.000 0.00 0.00 0.00 0.86
297 298 1.002659 TGCGGGCGGTGCTAAATATAT 59.997 47.619 0.00 0.00 0.00 0.86
298 299 2.081462 GCGGGCGGTGCTAAATATATT 58.919 47.619 0.00 0.00 0.00 1.28
299 300 2.486592 GCGGGCGGTGCTAAATATATTT 59.513 45.455 14.86 14.86 0.00 1.40
300 301 3.057806 GCGGGCGGTGCTAAATATATTTT 60.058 43.478 15.64 1.43 0.00 1.82
301 302 4.154556 GCGGGCGGTGCTAAATATATTTTA 59.845 41.667 15.64 1.44 0.00 1.52
302 303 5.163693 GCGGGCGGTGCTAAATATATTTTAT 60.164 40.000 15.64 0.00 0.00 1.40
303 304 6.483687 CGGGCGGTGCTAAATATATTTTATC 58.516 40.000 15.64 6.56 0.00 1.75
304 305 6.315393 CGGGCGGTGCTAAATATATTTTATCT 59.685 38.462 15.64 0.00 0.00 1.98
305 306 7.472543 GGGCGGTGCTAAATATATTTTATCTG 58.527 38.462 15.64 10.11 0.00 2.90
306 307 7.415206 GGGCGGTGCTAAATATATTTTATCTGG 60.415 40.741 15.64 4.34 0.00 3.86
307 308 6.967199 GCGGTGCTAAATATATTTTATCTGGC 59.033 38.462 15.64 9.70 0.00 4.85
308 309 7.361713 GCGGTGCTAAATATATTTTATCTGGCA 60.362 37.037 15.64 8.28 0.00 4.92
309 310 8.677300 CGGTGCTAAATATATTTTATCTGGCAT 58.323 33.333 15.64 0.00 0.00 4.40
311 312 9.708222 GTGCTAAATATATTTTATCTGGCATCG 57.292 33.333 15.64 0.00 0.00 3.84
312 313 9.448438 TGCTAAATATATTTTATCTGGCATCGT 57.552 29.630 15.64 0.00 0.00 3.73
313 314 9.922305 GCTAAATATATTTTATCTGGCATCGTC 57.078 33.333 15.64 0.00 0.00 4.20
315 316 8.547967 AAATATATTTTATCTGGCATCGTCGT 57.452 30.769 4.81 0.00 0.00 4.34
316 317 5.845985 ATATTTTATCTGGCATCGTCGTG 57.154 39.130 0.00 0.00 0.00 4.35
317 318 2.665649 TTTATCTGGCATCGTCGTGT 57.334 45.000 0.00 0.00 0.00 4.49
318 319 1.921243 TTATCTGGCATCGTCGTGTG 58.079 50.000 0.00 0.00 0.00 3.82
319 320 0.527600 TATCTGGCATCGTCGTGTGC 60.528 55.000 14.17 14.17 40.55 4.57
320 321 3.842126 CTGGCATCGTCGTGTGCG 61.842 66.667 15.42 3.71 42.15 5.34
321 322 4.656117 TGGCATCGTCGTGTGCGT 62.656 61.111 15.42 0.00 42.15 5.24
322 323 4.134187 GGCATCGTCGTGTGCGTG 62.134 66.667 15.42 0.00 42.15 5.34
323 324 4.134187 GCATCGTCGTGTGCGTGG 62.134 66.667 9.00 0.00 39.49 4.94
324 325 4.134187 CATCGTCGTGTGCGTGGC 62.134 66.667 0.00 0.00 39.49 5.01
325 326 4.656117 ATCGTCGTGTGCGTGGCA 62.656 61.111 0.00 0.00 39.49 4.92
326 327 3.932580 ATCGTCGTGTGCGTGGCAT 62.933 57.895 0.00 0.00 41.91 4.40
327 328 2.551097 ATCGTCGTGTGCGTGGCATA 62.551 55.000 0.00 0.00 41.91 3.14
328 329 2.776072 GTCGTGTGCGTGGCATAC 59.224 61.111 7.33 7.33 44.97 2.39
329 330 1.736645 GTCGTGTGCGTGGCATACT 60.737 57.895 14.09 0.00 45.95 2.12
330 331 1.005512 TCGTGTGCGTGGCATACTT 60.006 52.632 14.09 0.00 45.95 2.24
331 332 0.601576 TCGTGTGCGTGGCATACTTT 60.602 50.000 14.09 0.00 45.95 2.66
332 333 0.237235 CGTGTGCGTGGCATACTTTT 59.763 50.000 14.09 0.00 45.95 2.27
333 334 1.724654 CGTGTGCGTGGCATACTTTTC 60.725 52.381 14.09 0.00 45.95 2.29
334 335 1.265635 GTGTGCGTGGCATACTTTTCA 59.734 47.619 9.78 0.00 44.99 2.69
335 336 1.535028 TGTGCGTGGCATACTTTTCAG 59.465 47.619 0.00 0.00 41.91 3.02
336 337 1.804151 GTGCGTGGCATACTTTTCAGA 59.196 47.619 0.00 0.00 41.91 3.27
337 338 2.076100 TGCGTGGCATACTTTTCAGAG 58.924 47.619 0.00 0.00 31.71 3.35
338 339 2.076863 GCGTGGCATACTTTTCAGAGT 58.923 47.619 0.00 0.00 0.00 3.24
339 340 2.484264 GCGTGGCATACTTTTCAGAGTT 59.516 45.455 0.00 0.00 0.00 3.01
340 341 3.667960 GCGTGGCATACTTTTCAGAGTTG 60.668 47.826 0.00 0.00 0.00 3.16
341 342 3.498397 CGTGGCATACTTTTCAGAGTTGT 59.502 43.478 0.00 0.00 0.00 3.32
342 343 4.611355 CGTGGCATACTTTTCAGAGTTGTG 60.611 45.833 0.00 0.00 0.00 3.33
343 344 3.820467 TGGCATACTTTTCAGAGTTGTGG 59.180 43.478 0.00 0.00 0.00 4.17
344 345 3.366374 GGCATACTTTTCAGAGTTGTGGC 60.366 47.826 0.00 0.00 34.78 5.01
345 346 3.253188 GCATACTTTTCAGAGTTGTGGCA 59.747 43.478 0.00 0.00 0.00 4.92
346 347 4.787598 CATACTTTTCAGAGTTGTGGCAC 58.212 43.478 11.55 11.55 0.00 5.01
347 348 2.024414 ACTTTTCAGAGTTGTGGCACC 58.976 47.619 16.26 0.00 0.00 5.01
348 349 1.002468 CTTTTCAGAGTTGTGGCACCG 60.002 52.381 16.26 0.00 0.00 4.94
349 350 0.179234 TTTCAGAGTTGTGGCACCGA 59.821 50.000 16.26 0.27 0.00 4.69
350 351 0.179234 TTCAGAGTTGTGGCACCGAA 59.821 50.000 16.26 0.00 0.00 4.30
351 352 0.531974 TCAGAGTTGTGGCACCGAAC 60.532 55.000 16.26 13.62 0.00 3.95
352 353 0.813610 CAGAGTTGTGGCACCGAACA 60.814 55.000 16.26 0.00 0.00 3.18
353 354 0.814010 AGAGTTGTGGCACCGAACAC 60.814 55.000 16.26 12.07 38.08 3.32
354 355 1.078072 AGTTGTGGCACCGAACACA 60.078 52.632 16.26 0.00 45.06 3.72
355 356 1.063488 GTTGTGGCACCGAACACAC 59.937 57.895 16.26 0.00 46.25 3.82
356 357 1.377333 TTGTGGCACCGAACACACA 60.377 52.632 16.26 0.00 46.25 3.72
357 358 1.372838 TTGTGGCACCGAACACACAG 61.373 55.000 16.26 0.00 46.25 3.66
358 359 1.522806 GTGGCACCGAACACACAGA 60.523 57.895 6.29 0.00 37.54 3.41
359 360 1.227527 TGGCACCGAACACACAGAG 60.228 57.895 0.00 0.00 0.00 3.35
360 361 1.961277 GGCACCGAACACACAGAGG 60.961 63.158 0.00 0.00 0.00 3.69
361 362 1.069090 GCACCGAACACACAGAGGA 59.931 57.895 0.00 0.00 0.00 3.71
362 363 0.531974 GCACCGAACACACAGAGGAA 60.532 55.000 0.00 0.00 0.00 3.36
363 364 1.502231 CACCGAACACACAGAGGAAG 58.498 55.000 0.00 0.00 0.00 3.46
364 365 0.393077 ACCGAACACACAGAGGAAGG 59.607 55.000 0.00 0.00 0.00 3.46
365 366 0.951040 CCGAACACACAGAGGAAGGC 60.951 60.000 0.00 0.00 0.00 4.35
366 367 0.951040 CGAACACACAGAGGAAGGCC 60.951 60.000 0.00 0.00 0.00 5.19
411 412 6.668541 TTTCTTCACTGTCAAGTTCAAGAG 57.331 37.500 0.00 0.00 32.98 2.85
457 472 9.784531 AGTTGACAGATATTTTCTTCTTCTCAA 57.215 29.630 0.00 0.00 29.93 3.02
473 488 0.946528 TCAACTGCTGCACATGTGAC 59.053 50.000 29.80 19.67 0.00 3.67
477 492 0.949397 CTGCTGCACATGTGACAAGT 59.051 50.000 29.80 0.00 0.00 3.16
478 493 2.145536 CTGCTGCACATGTGACAAGTA 58.854 47.619 29.80 19.07 0.00 2.24
479 494 1.872952 TGCTGCACATGTGACAAGTAC 59.127 47.619 29.80 10.07 0.00 2.73
593 608 2.742372 CGGCCCTTGTCACCTTCG 60.742 66.667 0.00 0.00 0.00 3.79
596 611 2.328099 GCCCTTGTCACCTTCGCAG 61.328 63.158 0.00 0.00 0.00 5.18
1537 1557 0.975135 AGATGGAGATGGAGCGGATG 59.025 55.000 0.00 0.00 0.00 3.51
1563 1583 0.547075 AAGGAGATCGAGGAGTCGGA 59.453 55.000 0.00 0.00 46.80 4.55
1610 1630 0.723459 CGATGACGACGACGACAACA 60.723 55.000 15.32 8.67 45.19 3.33
1711 1731 0.806241 TCCATCATGACGACGACGAA 59.194 50.000 15.32 1.93 42.66 3.85
1753 1776 2.107953 GACGAGCAGGAGGCCATC 59.892 66.667 5.01 0.00 46.50 3.51
1756 1779 2.107953 GAGCAGGAGGCCATCGAC 59.892 66.667 5.01 0.00 46.50 4.20
1801 1824 0.660595 CCACGTACGAGCGGATCATC 60.661 60.000 24.41 0.00 35.98 2.92
1843 1866 2.028130 CTCATCCTCTCCAACTACGCT 58.972 52.381 0.00 0.00 0.00 5.07
1926 1951 2.336945 TGATTCTCATGCATTCCGCT 57.663 45.000 0.00 0.00 43.06 5.52
1935 1960 1.302366 TGCATTCCGCTAAGATGCAG 58.698 50.000 6.17 0.00 42.46 4.41
1996 2021 0.179054 TCTCGATCGACCTCGGTGAT 60.179 55.000 15.15 0.00 39.13 3.06
2017 2042 3.075005 TGCAGGGCGGAGGACTAC 61.075 66.667 0.00 0.00 0.00 2.73
2221 2246 0.320771 GTGTGGAGACCTGCGTCATT 60.321 55.000 0.00 0.00 41.87 2.57
2562 2587 5.132897 TGTGTGGATTTGGAATAAAGCAC 57.867 39.130 0.00 0.00 0.00 4.40
2729 2754 2.861147 ACAAAGGCTTGTACTCCCTC 57.139 50.000 0.00 0.00 44.14 4.30
2730 2755 1.351350 ACAAAGGCTTGTACTCCCTCC 59.649 52.381 0.00 0.00 44.14 4.30
2731 2756 0.613777 AAAGGCTTGTACTCCCTCCG 59.386 55.000 0.00 0.00 0.00 4.63
2734 2759 0.108281 GGCTTGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
2736 2761 0.172803 CTTGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
2737 2762 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2739 2764 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2740 2765 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2741 2766 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2742 2767 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2743 2768 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2744 2769 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2745 2770 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2746 2771 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2747 2772 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2749 2774 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2750 2775 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2751 2776 2.156117 CGTTCCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 35.93 4.85
2752 2777 3.720920 CGTTCCGAATTACTTGTCGCAAG 60.721 47.826 15.16 15.16 35.93 4.01
2754 2779 4.177165 TCCGAATTACTTGTCGCAAGTA 57.823 40.909 20.95 20.95 35.93 2.24
2756 2781 4.565166 TCCGAATTACTTGTCGCAAGTATG 59.435 41.667 23.59 16.51 35.93 2.39
2757 2782 4.260212 CCGAATTACTTGTCGCAAGTATGG 60.260 45.833 23.59 19.57 35.93 2.74
2758 2783 4.565166 CGAATTACTTGTCGCAAGTATGGA 59.435 41.667 23.59 14.66 33.27 3.41
2759 2784 5.234329 CGAATTACTTGTCGCAAGTATGGAT 59.766 40.000 23.59 15.77 33.27 3.41
2760 2785 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
2762 2787 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
2763 2788 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
2764 2789 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
2765 2790 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
2766 2791 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
2767 2792 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
2768 2793 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
2769 2794 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
2770 2795 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
2771 2796 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
2772 2797 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
2773 2798 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
2802 2827 8.492673 AGTTCTAGATACATTCATTTTTGCGA 57.507 30.769 0.00 0.00 0.00 5.10
2803 2828 8.391106 AGTTCTAGATACATTCATTTTTGCGAC 58.609 33.333 0.00 0.00 0.00 5.19
2804 2829 6.933130 TCTAGATACATTCATTTTTGCGACG 58.067 36.000 0.00 0.00 0.00 5.12
2805 2830 5.794687 AGATACATTCATTTTTGCGACGA 57.205 34.783 0.00 0.00 0.00 4.20
2806 2831 5.799960 AGATACATTCATTTTTGCGACGAG 58.200 37.500 0.00 0.00 0.00 4.18
2807 2832 3.896648 ACATTCATTTTTGCGACGAGT 57.103 38.095 0.00 0.00 0.00 4.18
2808 2833 6.533723 AGATACATTCATTTTTGCGACGAGTA 59.466 34.615 0.00 0.00 0.00 2.59
2809 2834 5.351233 ACATTCATTTTTGCGACGAGTAA 57.649 34.783 0.00 0.00 0.00 2.24
2810 2835 5.938322 ACATTCATTTTTGCGACGAGTAAT 58.062 33.333 0.00 0.00 0.00 1.89
2811 2836 6.378582 ACATTCATTTTTGCGACGAGTAATT 58.621 32.000 0.00 0.00 0.00 1.40
2812 2837 6.861055 ACATTCATTTTTGCGACGAGTAATTT 59.139 30.769 0.00 0.00 0.00 1.82
2813 2838 6.667981 TTCATTTTTGCGACGAGTAATTTG 57.332 33.333 0.00 0.00 0.00 2.32
2814 2839 5.150683 TCATTTTTGCGACGAGTAATTTGG 58.849 37.500 0.00 0.00 0.00 3.28
2815 2840 4.815040 TTTTTGCGACGAGTAATTTGGA 57.185 36.364 0.00 0.00 0.00 3.53
2816 2841 4.815040 TTTTGCGACGAGTAATTTGGAA 57.185 36.364 0.00 0.00 0.00 3.53
2817 2842 3.799137 TTGCGACGAGTAATTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
2818 2843 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3183 3209 2.601240 TTGAATCACCTGCATCCCAA 57.399 45.000 0.00 0.00 0.00 4.12
3262 3288 1.059098 AGCCAATGAGTGTGTCCTCA 58.941 50.000 0.00 0.00 45.06 3.86
3292 3318 6.161855 ACGTCCTTCATATTAGCTTCATCA 57.838 37.500 0.00 0.00 0.00 3.07
3379 3405 1.710013 CACGGTCTATCACTGCGTTT 58.290 50.000 0.00 0.00 34.19 3.60
3388 3414 4.814234 TCTATCACTGCGTTTGTGAAGTTT 59.186 37.500 10.27 0.00 45.82 2.66
3395 3421 2.223386 GCGTTTGTGAAGTTTGTGCCTA 60.223 45.455 0.00 0.00 0.00 3.93
3414 3440 6.257630 GTGCCTAAAAGCATTTCAAAGACAAA 59.742 34.615 0.00 0.00 46.24 2.83
3415 3441 6.257630 TGCCTAAAAGCATTTCAAAGACAAAC 59.742 34.615 0.00 0.00 37.28 2.93
3416 3442 6.562086 GCCTAAAAGCATTTCAAAGACAAACG 60.562 38.462 0.00 0.00 37.28 3.60
3470 3496 7.439157 TGACACAAAGGTAGATCTGAAAATG 57.561 36.000 5.18 1.95 0.00 2.32
3472 3498 6.306987 ACACAAAGGTAGATCTGAAAATGGT 58.693 36.000 5.18 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.222027 GGCATCGCTTTTAGCCTACAT 58.778 47.619 0.00 0.00 43.70 2.29
1 2 1.663695 GGCATCGCTTTTAGCCTACA 58.336 50.000 0.00 0.00 43.70 2.74
6 7 3.304293 GTGAATTTGGCATCGCTTTTAGC 59.696 43.478 0.00 0.00 38.02 3.09
7 8 4.737054 AGTGAATTTGGCATCGCTTTTAG 58.263 39.130 0.00 0.00 32.74 1.85
8 9 4.782019 AGTGAATTTGGCATCGCTTTTA 57.218 36.364 0.00 0.00 32.74 1.52
9 10 3.665745 AGTGAATTTGGCATCGCTTTT 57.334 38.095 0.00 0.00 32.74 2.27
10 11 3.665745 AAGTGAATTTGGCATCGCTTT 57.334 38.095 9.06 0.00 42.13 3.51
11 12 3.665745 AAAGTGAATTTGGCATCGCTT 57.334 38.095 9.06 9.06 45.56 4.68
12 13 3.005684 TCAAAAGTGAATTTGGCATCGCT 59.994 39.130 0.00 0.00 40.04 4.93
13 14 3.316283 TCAAAAGTGAATTTGGCATCGC 58.684 40.909 0.00 0.00 40.04 4.58
14 15 5.634439 TGAATCAAAAGTGAATTTGGCATCG 59.366 36.000 0.00 0.00 40.04 3.84
15 16 7.605410 ATGAATCAAAAGTGAATTTGGCATC 57.395 32.000 0.00 0.00 40.04 3.91
16 17 7.989416 AATGAATCAAAAGTGAATTTGGCAT 57.011 28.000 0.00 0.00 40.04 4.40
17 18 7.255173 CCAAATGAATCAAAAGTGAATTTGGCA 60.255 33.333 14.07 0.00 44.67 4.92
18 19 7.079475 CCAAATGAATCAAAAGTGAATTTGGC 58.921 34.615 14.07 0.00 44.67 4.52
20 21 7.588488 GTGCCAAATGAATCAAAAGTGAATTTG 59.412 33.333 0.00 0.00 38.29 2.32
21 22 7.255208 GGTGCCAAATGAATCAAAAGTGAATTT 60.255 33.333 0.00 0.00 37.30 1.82
22 23 6.205270 GGTGCCAAATGAATCAAAAGTGAATT 59.795 34.615 0.00 0.00 37.30 2.17
23 24 5.702209 GGTGCCAAATGAATCAAAAGTGAAT 59.298 36.000 0.00 0.00 37.30 2.57
24 25 5.055812 GGTGCCAAATGAATCAAAAGTGAA 58.944 37.500 0.00 0.00 37.30 3.18
25 26 4.630111 GGTGCCAAATGAATCAAAAGTGA 58.370 39.130 0.00 0.00 38.41 3.41
26 27 3.429543 CGGTGCCAAATGAATCAAAAGTG 59.570 43.478 0.00 0.00 0.00 3.16
27 28 3.320541 TCGGTGCCAAATGAATCAAAAGT 59.679 39.130 0.00 0.00 0.00 2.66
28 29 3.911868 TCGGTGCCAAATGAATCAAAAG 58.088 40.909 0.00 0.00 0.00 2.27
29 30 4.244066 CATCGGTGCCAAATGAATCAAAA 58.756 39.130 0.00 0.00 0.00 2.44
30 31 3.847542 CATCGGTGCCAAATGAATCAAA 58.152 40.909 0.00 0.00 0.00 2.69
31 32 2.417107 GCATCGGTGCCAAATGAATCAA 60.417 45.455 10.29 0.00 45.76 2.57
32 33 1.134753 GCATCGGTGCCAAATGAATCA 59.865 47.619 10.29 0.00 45.76 2.57
33 34 1.843992 GCATCGGTGCCAAATGAATC 58.156 50.000 10.29 0.00 45.76 2.52
44 45 1.077501 ACAATGGAGGGCATCGGTG 60.078 57.895 0.00 0.00 0.00 4.94
45 46 1.224592 GACAATGGAGGGCATCGGT 59.775 57.895 0.00 0.00 0.00 4.69
46 47 1.526917 GGACAATGGAGGGCATCGG 60.527 63.158 0.00 0.00 0.00 4.18
47 48 0.816825 CTGGACAATGGAGGGCATCG 60.817 60.000 0.00 0.00 0.00 3.84
48 49 1.105759 GCTGGACAATGGAGGGCATC 61.106 60.000 0.00 0.00 0.00 3.91
49 50 1.076485 GCTGGACAATGGAGGGCAT 60.076 57.895 0.00 0.00 0.00 4.40
50 51 0.913934 TAGCTGGACAATGGAGGGCA 60.914 55.000 0.00 0.00 0.00 5.36
51 52 0.179034 CTAGCTGGACAATGGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
52 53 1.134280 CACTAGCTGGACAATGGAGGG 60.134 57.143 3.17 0.00 0.00 4.30
53 54 1.745141 GCACTAGCTGGACAATGGAGG 60.745 57.143 3.17 0.00 37.91 4.30
54 55 1.661341 GCACTAGCTGGACAATGGAG 58.339 55.000 3.17 0.00 37.91 3.86
55 56 0.253044 GGCACTAGCTGGACAATGGA 59.747 55.000 3.17 0.00 41.70 3.41
56 57 0.035152 TGGCACTAGCTGGACAATGG 60.035 55.000 3.17 0.00 41.70 3.16
57 58 2.048444 ATGGCACTAGCTGGACAATG 57.952 50.000 3.17 0.00 41.70 2.82
58 59 3.931907 TTATGGCACTAGCTGGACAAT 57.068 42.857 3.17 0.00 41.70 2.71
59 60 3.931907 ATTATGGCACTAGCTGGACAA 57.068 42.857 3.17 0.00 41.70 3.18
60 61 3.931907 AATTATGGCACTAGCTGGACA 57.068 42.857 3.17 0.00 41.70 4.02
61 62 5.582689 AAAAATTATGGCACTAGCTGGAC 57.417 39.130 3.17 0.00 41.70 4.02
82 83 2.060050 TGCTCCGGTTCCTTGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
83 84 2.159382 GATGCTCCGGTTCCTTGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
84 85 1.351017 AGATGCTCCGGTTCCTTGAAA 59.649 47.619 0.00 0.00 0.00 2.69
85 86 0.984230 AGATGCTCCGGTTCCTTGAA 59.016 50.000 0.00 0.00 0.00 2.69
86 87 1.480954 GTAGATGCTCCGGTTCCTTGA 59.519 52.381 0.00 0.00 0.00 3.02
87 88 1.482593 AGTAGATGCTCCGGTTCCTTG 59.517 52.381 0.00 0.00 0.00 3.61
88 89 1.867363 AGTAGATGCTCCGGTTCCTT 58.133 50.000 0.00 0.00 0.00 3.36
89 90 1.482593 CAAGTAGATGCTCCGGTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
90 91 1.941325 CAAGTAGATGCTCCGGTTCC 58.059 55.000 0.00 0.00 0.00 3.62
91 92 1.291132 GCAAGTAGATGCTCCGGTTC 58.709 55.000 0.00 0.00 43.06 3.62
92 93 3.460648 GCAAGTAGATGCTCCGGTT 57.539 52.632 0.00 0.00 43.06 4.44
100 101 1.202568 TGGCATCGGAGCAAGTAGATG 60.203 52.381 2.61 0.42 42.28 2.90
101 102 1.123077 TGGCATCGGAGCAAGTAGAT 58.877 50.000 2.61 0.00 35.83 1.98
102 103 0.175760 GTGGCATCGGAGCAAGTAGA 59.824 55.000 0.00 0.00 35.83 2.59
103 104 0.108186 TGTGGCATCGGAGCAAGTAG 60.108 55.000 0.00 0.00 35.83 2.57
104 105 0.323302 TTGTGGCATCGGAGCAAGTA 59.677 50.000 0.00 0.00 35.83 2.24
105 106 1.073025 TTGTGGCATCGGAGCAAGT 59.927 52.632 0.00 0.00 35.83 3.16
106 107 1.503542 GTTGTGGCATCGGAGCAAG 59.496 57.895 0.00 0.00 35.83 4.01
107 108 1.971167 GGTTGTGGCATCGGAGCAA 60.971 57.895 0.00 0.00 35.83 3.91
108 109 2.359850 GGTTGTGGCATCGGAGCA 60.360 61.111 0.00 0.00 35.83 4.26
109 110 1.971167 TTGGTTGTGGCATCGGAGC 60.971 57.895 0.00 0.00 0.00 4.70
110 111 0.888736 TGTTGGTTGTGGCATCGGAG 60.889 55.000 0.00 0.00 0.00 4.63
111 112 0.466372 TTGTTGGTTGTGGCATCGGA 60.466 50.000 0.00 0.00 0.00 4.55
112 113 0.387202 TTTGTTGGTTGTGGCATCGG 59.613 50.000 0.00 0.00 0.00 4.18
113 114 1.769733 CTTTGTTGGTTGTGGCATCG 58.230 50.000 0.00 0.00 0.00 3.84
114 115 1.202510 TGCTTTGTTGGTTGTGGCATC 60.203 47.619 0.00 0.00 0.00 3.91
115 116 0.829333 TGCTTTGTTGGTTGTGGCAT 59.171 45.000 0.00 0.00 0.00 4.40
116 117 0.610174 TTGCTTTGTTGGTTGTGGCA 59.390 45.000 0.00 0.00 0.00 4.92
117 118 1.952193 ATTGCTTTGTTGGTTGTGGC 58.048 45.000 0.00 0.00 0.00 5.01
118 119 5.115480 AGTTTATTGCTTTGTTGGTTGTGG 58.885 37.500 0.00 0.00 0.00 4.17
119 120 7.516627 GCTTAGTTTATTGCTTTGTTGGTTGTG 60.517 37.037 0.00 0.00 0.00 3.33
120 121 6.478673 GCTTAGTTTATTGCTTTGTTGGTTGT 59.521 34.615 0.00 0.00 0.00 3.32
121 122 6.073819 GGCTTAGTTTATTGCTTTGTTGGTTG 60.074 38.462 0.00 0.00 0.00 3.77
122 123 5.989168 GGCTTAGTTTATTGCTTTGTTGGTT 59.011 36.000 0.00 0.00 0.00 3.67
123 124 5.304357 AGGCTTAGTTTATTGCTTTGTTGGT 59.696 36.000 0.00 0.00 0.00 3.67
124 125 5.634859 CAGGCTTAGTTTATTGCTTTGTTGG 59.365 40.000 0.00 0.00 0.00 3.77
125 126 6.215845 ACAGGCTTAGTTTATTGCTTTGTTG 58.784 36.000 0.00 0.00 0.00 3.33
126 127 6.040391 TGACAGGCTTAGTTTATTGCTTTGTT 59.960 34.615 0.00 0.00 0.00 2.83
127 128 5.534654 TGACAGGCTTAGTTTATTGCTTTGT 59.465 36.000 0.00 0.00 0.00 2.83
128 129 5.858581 GTGACAGGCTTAGTTTATTGCTTTG 59.141 40.000 0.00 0.00 0.00 2.77
129 130 5.770162 AGTGACAGGCTTAGTTTATTGCTTT 59.230 36.000 0.00 0.00 0.00 3.51
130 131 5.316987 AGTGACAGGCTTAGTTTATTGCTT 58.683 37.500 0.00 0.00 0.00 3.91
131 132 4.911390 AGTGACAGGCTTAGTTTATTGCT 58.089 39.130 0.00 0.00 0.00 3.91
132 133 4.695455 TGAGTGACAGGCTTAGTTTATTGC 59.305 41.667 0.00 0.00 0.00 3.56
133 134 6.183360 CCATGAGTGACAGGCTTAGTTTATTG 60.183 42.308 0.00 0.00 0.00 1.90
134 135 5.882557 CCATGAGTGACAGGCTTAGTTTATT 59.117 40.000 0.00 0.00 0.00 1.40
135 136 5.431765 CCATGAGTGACAGGCTTAGTTTAT 58.568 41.667 0.00 0.00 0.00 1.40
136 137 4.323485 CCCATGAGTGACAGGCTTAGTTTA 60.323 45.833 0.00 0.00 0.00 2.01
137 138 3.560025 CCCATGAGTGACAGGCTTAGTTT 60.560 47.826 0.00 0.00 0.00 2.66
138 139 2.026822 CCCATGAGTGACAGGCTTAGTT 60.027 50.000 0.00 0.00 0.00 2.24
139 140 1.556911 CCCATGAGTGACAGGCTTAGT 59.443 52.381 0.00 0.00 0.00 2.24
140 141 1.833630 TCCCATGAGTGACAGGCTTAG 59.166 52.381 0.00 0.00 0.00 2.18
141 142 1.951209 TCCCATGAGTGACAGGCTTA 58.049 50.000 0.00 0.00 0.00 3.09
142 143 1.004044 CTTCCCATGAGTGACAGGCTT 59.996 52.381 0.00 0.00 0.00 4.35
143 144 0.617413 CTTCCCATGAGTGACAGGCT 59.383 55.000 0.00 0.00 0.00 4.58
144 145 0.615331 TCTTCCCATGAGTGACAGGC 59.385 55.000 0.00 0.00 0.00 4.85
145 146 2.616510 GGTTCTTCCCATGAGTGACAGG 60.617 54.545 0.00 0.00 0.00 4.00
146 147 2.704572 GGTTCTTCCCATGAGTGACAG 58.295 52.381 0.00 0.00 0.00 3.51
147 148 1.001974 CGGTTCTTCCCATGAGTGACA 59.998 52.381 0.00 0.00 0.00 3.58
148 149 1.676014 CCGGTTCTTCCCATGAGTGAC 60.676 57.143 0.00 0.00 0.00 3.67
149 150 0.613260 CCGGTTCTTCCCATGAGTGA 59.387 55.000 0.00 0.00 0.00 3.41
150 151 1.026718 GCCGGTTCTTCCCATGAGTG 61.027 60.000 1.90 0.00 0.00 3.51
151 152 1.201429 AGCCGGTTCTTCCCATGAGT 61.201 55.000 1.90 0.00 0.00 3.41
152 153 0.745845 CAGCCGGTTCTTCCCATGAG 60.746 60.000 1.90 0.00 0.00 2.90
153 154 1.299648 CAGCCGGTTCTTCCCATGA 59.700 57.895 1.90 0.00 0.00 3.07
154 155 1.002134 ACAGCCGGTTCTTCCCATG 60.002 57.895 1.90 0.00 0.00 3.66
155 156 1.002134 CACAGCCGGTTCTTCCCAT 60.002 57.895 1.90 0.00 0.00 4.00
156 157 2.111999 CTCACAGCCGGTTCTTCCCA 62.112 60.000 1.90 0.00 0.00 4.37
157 158 1.376037 CTCACAGCCGGTTCTTCCC 60.376 63.158 1.90 0.00 0.00 3.97
158 159 2.035442 GCTCACAGCCGGTTCTTCC 61.035 63.158 1.90 0.00 34.48 3.46
159 160 3.567473 GCTCACAGCCGGTTCTTC 58.433 61.111 1.90 0.00 34.48 2.87
168 169 0.536006 ACTTGTTCCTGGCTCACAGC 60.536 55.000 0.00 0.00 46.14 4.40
170 171 0.249868 CGACTTGTTCCTGGCTCACA 60.250 55.000 0.00 0.00 0.00 3.58
171 172 1.569479 GCGACTTGTTCCTGGCTCAC 61.569 60.000 0.00 0.00 0.00 3.51
172 173 1.301716 GCGACTTGTTCCTGGCTCA 60.302 57.895 0.00 0.00 0.00 4.26
173 174 1.004440 AGCGACTTGTTCCTGGCTC 60.004 57.895 0.00 0.00 0.00 4.70
174 175 1.302033 CAGCGACTTGTTCCTGGCT 60.302 57.895 0.00 0.00 0.00 4.75
175 176 2.328099 CCAGCGACTTGTTCCTGGC 61.328 63.158 7.40 0.00 36.47 4.85
176 177 0.320374 TACCAGCGACTTGTTCCTGG 59.680 55.000 14.69 14.69 43.39 4.45
177 178 1.000955 ACTACCAGCGACTTGTTCCTG 59.999 52.381 0.00 0.00 0.00 3.86
178 179 1.000955 CACTACCAGCGACTTGTTCCT 59.999 52.381 0.00 0.00 0.00 3.36
179 180 1.429463 CACTACCAGCGACTTGTTCC 58.571 55.000 0.00 0.00 0.00 3.62
180 181 1.429463 CCACTACCAGCGACTTGTTC 58.571 55.000 0.00 0.00 0.00 3.18
181 182 0.034896 CCCACTACCAGCGACTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
182 183 1.671742 CCCACTACCAGCGACTTGT 59.328 57.895 0.00 0.00 0.00 3.16
183 184 1.079127 CCCCACTACCAGCGACTTG 60.079 63.158 0.00 0.00 0.00 3.16
184 185 2.955881 GCCCCACTACCAGCGACTT 61.956 63.158 0.00 0.00 0.00 3.01
185 186 3.391382 GCCCCACTACCAGCGACT 61.391 66.667 0.00 0.00 0.00 4.18
186 187 3.248446 TTGCCCCACTACCAGCGAC 62.248 63.158 0.00 0.00 0.00 5.19
187 188 2.925706 TTGCCCCACTACCAGCGA 60.926 61.111 0.00 0.00 0.00 4.93
188 189 2.746277 GTTGCCCCACTACCAGCG 60.746 66.667 0.00 0.00 0.00 5.18
189 190 2.361230 GGTTGCCCCACTACCAGC 60.361 66.667 0.00 0.00 43.01 4.85
190 191 2.046314 CGGTTGCCCCACTACCAG 60.046 66.667 0.00 0.00 43.61 4.00
191 192 2.850130 ACGGTTGCCCCACTACCA 60.850 61.111 0.00 0.00 43.61 3.25
192 193 2.046604 GACGGTTGCCCCACTACC 60.047 66.667 0.00 0.00 40.42 3.18
193 194 2.433664 CGACGGTTGCCCCACTAC 60.434 66.667 0.00 0.00 0.00 2.73
194 195 4.382320 GCGACGGTTGCCCCACTA 62.382 66.667 9.28 0.00 0.00 2.74
198 199 2.660258 ATATCAGCGACGGTTGCCCC 62.660 60.000 16.59 0.00 0.00 5.80
199 200 0.032952 TATATCAGCGACGGTTGCCC 59.967 55.000 16.59 0.00 0.00 5.36
200 201 2.080286 ATATATCAGCGACGGTTGCC 57.920 50.000 16.59 0.00 0.00 4.52
201 202 5.579718 AGTATATATATCAGCGACGGTTGC 58.420 41.667 12.54 12.54 0.00 4.17
202 203 7.917597 ACTAGTATATATATCAGCGACGGTTG 58.082 38.462 0.00 0.00 0.00 3.77
203 204 8.503458 AACTAGTATATATATCAGCGACGGTT 57.497 34.615 0.00 1.20 0.00 4.44
204 205 8.503458 AAACTAGTATATATATCAGCGACGGT 57.497 34.615 0.00 0.00 0.00 4.83
225 226 8.768397 TGGAGGTCAAACTCATACATATAAACT 58.232 33.333 0.00 0.00 39.27 2.66
226 227 8.958119 TGGAGGTCAAACTCATACATATAAAC 57.042 34.615 0.00 0.00 39.27 2.01
227 228 7.715249 GCTGGAGGTCAAACTCATACATATAAA 59.285 37.037 0.00 0.00 39.27 1.40
228 229 7.217200 GCTGGAGGTCAAACTCATACATATAA 58.783 38.462 0.00 0.00 39.27 0.98
229 230 6.239600 GGCTGGAGGTCAAACTCATACATATA 60.240 42.308 0.00 0.00 39.27 0.86
230 231 5.455326 GGCTGGAGGTCAAACTCATACATAT 60.455 44.000 0.00 0.00 39.27 1.78
231 232 4.141711 GGCTGGAGGTCAAACTCATACATA 60.142 45.833 0.00 0.00 39.27 2.29
232 233 3.370953 GGCTGGAGGTCAAACTCATACAT 60.371 47.826 0.00 0.00 39.27 2.29
233 234 2.027192 GGCTGGAGGTCAAACTCATACA 60.027 50.000 0.00 0.00 39.27 2.29
234 235 2.633488 GGCTGGAGGTCAAACTCATAC 58.367 52.381 0.00 0.00 39.27 2.39
235 236 1.207089 CGGCTGGAGGTCAAACTCATA 59.793 52.381 0.00 0.00 39.27 2.15
236 237 0.036010 CGGCTGGAGGTCAAACTCAT 60.036 55.000 0.00 0.00 39.27 2.90
237 238 1.118965 TCGGCTGGAGGTCAAACTCA 61.119 55.000 0.00 0.00 39.27 3.41
238 239 0.250513 ATCGGCTGGAGGTCAAACTC 59.749 55.000 0.00 0.00 36.76 3.01
239 240 0.036010 CATCGGCTGGAGGTCAAACT 60.036 55.000 0.00 0.00 0.00 2.66
240 241 1.648467 GCATCGGCTGGAGGTCAAAC 61.648 60.000 0.00 0.00 36.96 2.93
241 242 1.377202 GCATCGGCTGGAGGTCAAA 60.377 57.895 0.00 0.00 36.96 2.69
242 243 2.268920 GCATCGGCTGGAGGTCAA 59.731 61.111 0.00 0.00 36.96 3.18
243 244 2.871795 TAGGCATCGGCTGGAGGTCA 62.872 60.000 0.00 0.00 39.30 4.02
244 245 1.686325 TTAGGCATCGGCTGGAGGTC 61.686 60.000 0.00 0.00 39.30 3.85
245 246 1.056700 ATTAGGCATCGGCTGGAGGT 61.057 55.000 0.00 0.00 39.30 3.85
246 247 0.109342 AATTAGGCATCGGCTGGAGG 59.891 55.000 0.00 0.00 39.30 4.30
247 248 1.071385 AGAATTAGGCATCGGCTGGAG 59.929 52.381 0.00 0.00 39.30 3.86
248 249 1.131638 AGAATTAGGCATCGGCTGGA 58.868 50.000 0.00 0.00 39.30 3.86
249 250 1.972872 AAGAATTAGGCATCGGCTGG 58.027 50.000 0.00 0.00 39.30 4.85
250 251 2.945008 TGAAAGAATTAGGCATCGGCTG 59.055 45.455 0.00 0.00 39.30 4.85
251 252 2.945668 GTGAAAGAATTAGGCATCGGCT 59.054 45.455 0.00 0.00 42.39 5.52
252 253 2.682856 TGTGAAAGAATTAGGCATCGGC 59.317 45.455 0.00 0.00 40.13 5.54
253 254 3.941483 ACTGTGAAAGAATTAGGCATCGG 59.059 43.478 0.00 0.00 0.00 4.18
254 255 4.393062 ACACTGTGAAAGAATTAGGCATCG 59.607 41.667 15.86 0.00 0.00 3.84
255 256 5.634896 CACACTGTGAAAGAATTAGGCATC 58.365 41.667 15.86 0.00 35.23 3.91
256 257 4.082571 GCACACTGTGAAAGAATTAGGCAT 60.083 41.667 15.86 0.00 35.23 4.40
257 258 3.253188 GCACACTGTGAAAGAATTAGGCA 59.747 43.478 15.86 0.00 35.23 4.75
258 259 3.667960 CGCACACTGTGAAAGAATTAGGC 60.668 47.826 15.86 1.71 35.23 3.93
259 260 3.120199 CCGCACACTGTGAAAGAATTAGG 60.120 47.826 15.86 1.14 35.23 2.69
260 261 3.120199 CCCGCACACTGTGAAAGAATTAG 60.120 47.826 15.86 0.00 35.23 1.73
261 262 2.811431 CCCGCACACTGTGAAAGAATTA 59.189 45.455 15.86 0.00 35.23 1.40
262 263 1.608590 CCCGCACACTGTGAAAGAATT 59.391 47.619 15.86 0.00 35.23 2.17
263 264 1.238439 CCCGCACACTGTGAAAGAAT 58.762 50.000 15.86 0.00 35.23 2.40
264 265 1.444119 GCCCGCACACTGTGAAAGAA 61.444 55.000 15.86 0.00 35.23 2.52
265 266 1.891919 GCCCGCACACTGTGAAAGA 60.892 57.895 15.86 0.00 35.23 2.52
266 267 2.639286 GCCCGCACACTGTGAAAG 59.361 61.111 15.86 5.13 35.23 2.62
267 268 3.276091 CGCCCGCACACTGTGAAA 61.276 61.111 15.86 0.00 35.23 2.69
275 276 2.523453 TATTTAGCACCGCCCGCACA 62.523 55.000 0.00 0.00 0.00 4.57
276 277 1.164041 ATATTTAGCACCGCCCGCAC 61.164 55.000 0.00 0.00 0.00 5.34
277 278 0.393448 TATATTTAGCACCGCCCGCA 59.607 50.000 0.00 0.00 0.00 5.69
278 279 1.734163 ATATATTTAGCACCGCCCGC 58.266 50.000 0.00 0.00 0.00 6.13
279 280 4.759516 AAAATATATTTAGCACCGCCCG 57.240 40.909 11.07 0.00 0.00 6.13
280 281 7.415206 CCAGATAAAATATATTTAGCACCGCCC 60.415 40.741 11.07 0.00 0.00 6.13
281 282 7.472543 CCAGATAAAATATATTTAGCACCGCC 58.527 38.462 11.07 0.00 0.00 6.13
282 283 6.967199 GCCAGATAAAATATATTTAGCACCGC 59.033 38.462 11.07 6.34 0.00 5.68
283 284 8.039603 TGCCAGATAAAATATATTTAGCACCG 57.960 34.615 11.07 0.66 0.00 4.94
285 286 9.708222 CGATGCCAGATAAAATATATTTAGCAC 57.292 33.333 11.07 4.37 0.00 4.40
286 287 9.448438 ACGATGCCAGATAAAATATATTTAGCA 57.552 29.630 11.07 12.59 0.00 3.49
287 288 9.922305 GACGATGCCAGATAAAATATATTTAGC 57.078 33.333 11.07 8.20 0.00 3.09
289 290 9.647797 ACGACGATGCCAGATAAAATATATTTA 57.352 29.630 11.07 1.35 0.00 1.40
290 291 8.443160 CACGACGATGCCAGATAAAATATATTT 58.557 33.333 0.00 4.81 0.00 1.40
291 292 7.602644 ACACGACGATGCCAGATAAAATATATT 59.397 33.333 0.00 0.00 0.00 1.28
292 293 7.063426 CACACGACGATGCCAGATAAAATATAT 59.937 37.037 0.00 0.00 0.00 0.86
293 294 6.364976 CACACGACGATGCCAGATAAAATATA 59.635 38.462 0.00 0.00 0.00 0.86
294 295 5.177511 CACACGACGATGCCAGATAAAATAT 59.822 40.000 0.00 0.00 0.00 1.28
295 296 4.506288 CACACGACGATGCCAGATAAAATA 59.494 41.667 0.00 0.00 0.00 1.40
296 297 3.309682 CACACGACGATGCCAGATAAAAT 59.690 43.478 0.00 0.00 0.00 1.82
297 298 2.670905 CACACGACGATGCCAGATAAAA 59.329 45.455 0.00 0.00 0.00 1.52
298 299 2.267426 CACACGACGATGCCAGATAAA 58.733 47.619 0.00 0.00 0.00 1.40
299 300 1.921243 CACACGACGATGCCAGATAA 58.079 50.000 0.00 0.00 0.00 1.75
300 301 0.527600 GCACACGACGATGCCAGATA 60.528 55.000 15.08 0.00 35.73 1.98
301 302 1.811266 GCACACGACGATGCCAGAT 60.811 57.895 15.08 0.00 35.73 2.90
302 303 2.432456 GCACACGACGATGCCAGA 60.432 61.111 15.08 0.00 35.73 3.86
303 304 3.842126 CGCACACGACGATGCCAG 61.842 66.667 18.54 6.39 43.93 4.85
304 305 4.656117 ACGCACACGACGATGCCA 62.656 61.111 18.54 0.00 43.93 4.92
305 306 4.134187 CACGCACACGACGATGCC 62.134 66.667 18.54 6.00 43.93 4.40
306 307 4.134187 CCACGCACACGACGATGC 62.134 66.667 15.73 15.73 43.93 3.91
307 308 4.134187 GCCACGCACACGACGATG 62.134 66.667 0.00 0.08 43.93 3.84
308 309 2.551097 TATGCCACGCACACGACGAT 62.551 55.000 0.00 0.00 43.04 3.73
309 310 3.270335 TATGCCACGCACACGACGA 62.270 57.895 0.00 0.00 43.04 4.20
310 311 2.807470 TATGCCACGCACACGACG 60.807 61.111 0.00 0.00 43.04 5.12
311 312 1.289109 AAGTATGCCACGCACACGAC 61.289 55.000 0.00 0.00 41.22 4.34
312 313 0.601576 AAAGTATGCCACGCACACGA 60.602 50.000 0.00 0.00 41.22 4.35
313 314 0.237235 AAAAGTATGCCACGCACACG 59.763 50.000 0.00 0.00 41.22 4.49
314 315 1.265635 TGAAAAGTATGCCACGCACAC 59.734 47.619 0.00 0.00 43.04 3.82
315 316 1.535028 CTGAAAAGTATGCCACGCACA 59.465 47.619 0.00 0.00 43.04 4.57
316 317 1.804151 TCTGAAAAGTATGCCACGCAC 59.196 47.619 0.00 0.00 43.04 5.34
317 318 2.076100 CTCTGAAAAGTATGCCACGCA 58.924 47.619 0.00 0.00 44.86 5.24
318 319 2.076863 ACTCTGAAAAGTATGCCACGC 58.923 47.619 0.00 0.00 0.00 5.34
319 320 3.498397 ACAACTCTGAAAAGTATGCCACG 59.502 43.478 0.00 0.00 0.00 4.94
320 321 4.320494 CCACAACTCTGAAAAGTATGCCAC 60.320 45.833 0.00 0.00 0.00 5.01
321 322 3.820467 CCACAACTCTGAAAAGTATGCCA 59.180 43.478 0.00 0.00 0.00 4.92
322 323 3.366374 GCCACAACTCTGAAAAGTATGCC 60.366 47.826 0.00 0.00 0.00 4.40
323 324 3.253188 TGCCACAACTCTGAAAAGTATGC 59.747 43.478 0.00 0.00 0.00 3.14
324 325 4.320494 GGTGCCACAACTCTGAAAAGTATG 60.320 45.833 0.00 0.00 0.00 2.39
325 326 3.821033 GGTGCCACAACTCTGAAAAGTAT 59.179 43.478 0.00 0.00 0.00 2.12
326 327 3.211045 GGTGCCACAACTCTGAAAAGTA 58.789 45.455 0.00 0.00 0.00 2.24
327 328 2.024414 GGTGCCACAACTCTGAAAAGT 58.976 47.619 0.00 0.00 0.00 2.66
328 329 1.002468 CGGTGCCACAACTCTGAAAAG 60.002 52.381 0.00 0.00 0.00 2.27
329 330 1.021202 CGGTGCCACAACTCTGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
330 331 0.179234 TCGGTGCCACAACTCTGAAA 59.821 50.000 0.00 0.00 0.00 2.69
331 332 0.179234 TTCGGTGCCACAACTCTGAA 59.821 50.000 0.00 0.00 0.00 3.02
332 333 0.531974 GTTCGGTGCCACAACTCTGA 60.532 55.000 0.00 0.00 0.00 3.27
333 334 0.813610 TGTTCGGTGCCACAACTCTG 60.814 55.000 0.00 0.00 0.00 3.35
334 335 0.814010 GTGTTCGGTGCCACAACTCT 60.814 55.000 0.00 0.00 0.00 3.24
335 336 1.092921 TGTGTTCGGTGCCACAACTC 61.093 55.000 0.00 0.00 38.56 3.01
336 337 1.078072 TGTGTTCGGTGCCACAACT 60.078 52.632 0.00 0.00 38.56 3.16
337 338 1.063488 GTGTGTTCGGTGCCACAAC 59.937 57.895 0.00 0.00 42.73 3.32
338 339 1.372838 CTGTGTGTTCGGTGCCACAA 61.373 55.000 0.00 0.00 42.73 3.33
339 340 1.817520 CTGTGTGTTCGGTGCCACA 60.818 57.895 0.00 0.00 39.16 4.17
340 341 1.498865 CTCTGTGTGTTCGGTGCCAC 61.499 60.000 0.00 0.00 0.00 5.01
341 342 1.227527 CTCTGTGTGTTCGGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
342 343 1.961277 CCTCTGTGTGTTCGGTGCC 60.961 63.158 0.00 0.00 0.00 5.01
343 344 0.531974 TTCCTCTGTGTGTTCGGTGC 60.532 55.000 0.00 0.00 0.00 5.01
344 345 1.502231 CTTCCTCTGTGTGTTCGGTG 58.498 55.000 0.00 0.00 0.00 4.94
345 346 0.393077 CCTTCCTCTGTGTGTTCGGT 59.607 55.000 0.00 0.00 0.00 4.69
346 347 0.951040 GCCTTCCTCTGTGTGTTCGG 60.951 60.000 0.00 0.00 0.00 4.30
347 348 0.951040 GGCCTTCCTCTGTGTGTTCG 60.951 60.000 0.00 0.00 0.00 3.95
348 349 0.398318 AGGCCTTCCTCTGTGTGTTC 59.602 55.000 0.00 0.00 38.72 3.18
349 350 1.729586 TAGGCCTTCCTCTGTGTGTT 58.270 50.000 12.58 0.00 43.06 3.32
350 351 1.625818 CTTAGGCCTTCCTCTGTGTGT 59.374 52.381 12.58 0.00 43.06 3.72
351 352 1.625818 ACTTAGGCCTTCCTCTGTGTG 59.374 52.381 12.58 0.00 43.06 3.82
352 353 2.031495 ACTTAGGCCTTCCTCTGTGT 57.969 50.000 12.58 0.00 43.06 3.72
353 354 4.553330 TTAACTTAGGCCTTCCTCTGTG 57.447 45.455 12.58 0.00 43.06 3.66
354 355 5.314529 GTTTTAACTTAGGCCTTCCTCTGT 58.685 41.667 12.58 0.00 43.06 3.41
355 356 4.392138 CGTTTTAACTTAGGCCTTCCTCTG 59.608 45.833 12.58 0.00 43.06 3.35
356 357 4.576879 CGTTTTAACTTAGGCCTTCCTCT 58.423 43.478 12.58 0.00 43.06 3.69
357 358 3.126514 GCGTTTTAACTTAGGCCTTCCTC 59.873 47.826 12.58 0.00 43.06 3.71
358 359 3.079578 GCGTTTTAACTTAGGCCTTCCT 58.920 45.455 12.58 0.00 46.57 3.36
359 360 3.079578 AGCGTTTTAACTTAGGCCTTCC 58.920 45.455 12.58 0.00 0.00 3.46
360 361 4.761235 AAGCGTTTTAACTTAGGCCTTC 57.239 40.909 12.58 0.00 0.00 3.46
361 362 4.319984 CGAAAGCGTTTTAACTTAGGCCTT 60.320 41.667 12.58 0.00 0.00 4.35
362 363 3.187842 CGAAAGCGTTTTAACTTAGGCCT 59.812 43.478 11.78 11.78 0.00 5.19
363 364 3.485633 CGAAAGCGTTTTAACTTAGGCC 58.514 45.455 0.00 0.00 0.00 5.19
457 472 0.949397 CTTGTCACATGTGCAGCAGT 59.051 50.000 21.38 0.00 0.00 4.40
498 513 2.289444 GGGTGCTAGCTACTTGTCACAA 60.289 50.000 17.23 0.00 0.00 3.33
593 608 2.870372 GTCCGCACACCATTCTGC 59.130 61.111 0.00 0.00 0.00 4.26
596 611 2.860293 CACGTCCGCACACCATTC 59.140 61.111 0.00 0.00 0.00 2.67
1513 1533 1.126488 GCTCCATCTCCATCTCCACA 58.874 55.000 0.00 0.00 0.00 4.17
1537 1557 1.745264 CTCGATCTCCTTGGCCCTC 59.255 63.158 0.00 0.00 0.00 4.30
1563 1583 2.912025 CGGGTTTGGCCTTGCTGT 60.912 61.111 3.32 0.00 37.43 4.40
1728 1751 2.183858 CTCCTGCTCGTCGTCGTTGA 62.184 60.000 1.33 0.00 38.33 3.18
1784 1807 1.278937 CGATGATCCGCTCGTACGT 59.721 57.895 16.05 0.00 0.00 3.57
1926 1951 7.094975 ACGTACAAATTAAACAGCTGCATCTTA 60.095 33.333 15.27 3.89 0.00 2.10
1935 1960 5.669122 ACACGTACGTACAAATTAAACAGC 58.331 37.500 22.34 0.00 0.00 4.40
2017 2042 4.389576 GCCACCGCACGCTTGAAG 62.390 66.667 0.00 0.00 34.03 3.02
2221 2246 1.593209 GTCGTTGTTGCCGGAGTCA 60.593 57.895 5.05 0.00 0.00 3.41
2715 2740 0.108281 GAACGGAGGGAGTACAAGCC 60.108 60.000 0.00 0.00 0.00 4.35
2730 2755 6.846654 TACTTGCGACAAGTAATTCGGAACG 61.847 44.000 21.94 0.00 40.13 3.95
2731 2756 3.185797 ACTTGCGACAAGTAATTCGGAAC 59.814 43.478 19.21 0.00 40.13 3.62
2734 2759 4.260212 CCATACTTGCGACAAGTAATTCGG 60.260 45.833 25.44 20.47 36.45 4.30
2736 2761 6.037172 ACATCCATACTTGCGACAAGTAATTC 59.963 38.462 25.44 0.00 36.45 2.17
2737 2762 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
2739 2764 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
2740 2765 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
2741 2766 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
2742 2767 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
2743 2768 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
2744 2769 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
2745 2770 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
2746 2771 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
2747 2772 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
2776 2801 9.594478 TCGCAAAAATGAATGTATCTAGAACTA 57.406 29.630 0.00 0.00 0.00 2.24
2777 2802 8.391106 GTCGCAAAAATGAATGTATCTAGAACT 58.609 33.333 0.00 0.00 0.00 3.01
2778 2803 7.370836 CGTCGCAAAAATGAATGTATCTAGAAC 59.629 37.037 0.00 0.00 0.00 3.01
2779 2804 7.276878 TCGTCGCAAAAATGAATGTATCTAGAA 59.723 33.333 0.00 0.00 0.00 2.10
2780 2805 6.754675 TCGTCGCAAAAATGAATGTATCTAGA 59.245 34.615 0.00 0.00 0.00 2.43
2781 2806 6.933130 TCGTCGCAAAAATGAATGTATCTAG 58.067 36.000 0.00 0.00 0.00 2.43
2782 2807 6.533723 ACTCGTCGCAAAAATGAATGTATCTA 59.466 34.615 0.00 0.00 0.00 1.98
2783 2808 5.351465 ACTCGTCGCAAAAATGAATGTATCT 59.649 36.000 0.00 0.00 0.00 1.98
2784 2809 5.560148 ACTCGTCGCAAAAATGAATGTATC 58.440 37.500 0.00 0.00 0.00 2.24
2785 2810 5.545658 ACTCGTCGCAAAAATGAATGTAT 57.454 34.783 0.00 0.00 0.00 2.29
2786 2811 6.469139 TTACTCGTCGCAAAAATGAATGTA 57.531 33.333 0.00 0.00 0.00 2.29
2787 2812 3.896648 ACTCGTCGCAAAAATGAATGT 57.103 38.095 0.00 0.00 0.00 2.71
2788 2813 6.853279 AATTACTCGTCGCAAAAATGAATG 57.147 33.333 0.00 0.00 0.00 2.67
2789 2814 6.307800 CCAAATTACTCGTCGCAAAAATGAAT 59.692 34.615 0.00 0.00 0.00 2.57
2790 2815 5.627367 CCAAATTACTCGTCGCAAAAATGAA 59.373 36.000 0.00 0.00 0.00 2.57
2791 2816 5.049336 TCCAAATTACTCGTCGCAAAAATGA 60.049 36.000 0.00 0.00 0.00 2.57
2792 2817 5.150683 TCCAAATTACTCGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
2793 2818 5.365403 TCCAAATTACTCGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2794 2819 4.815040 TCCAAATTACTCGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
2795 2820 4.529446 GTTCCAAATTACTCGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
2796 2821 3.363182 CGTTCCAAATTACTCGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
2797 2822 2.156117 CGTTCCAAATTACTCGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
2798 2823 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2799 2824 2.414768 CGTTCCAAATTACTCGTCGC 57.585 50.000 0.00 0.00 0.00 5.19
3183 3209 3.753294 ACGAAGACACAAGATTGGAGT 57.247 42.857 0.00 0.00 0.00 3.85
3262 3288 6.281405 AGCTAATATGAAGGACGTCGATTTT 58.719 36.000 9.92 1.19 0.00 1.82
3292 3318 2.779506 GTCTTGTCGGGATCAACCTTT 58.220 47.619 0.00 0.00 38.98 3.11
3379 3405 3.445450 TGCTTTTAGGCACAAACTTCACA 59.555 39.130 0.00 0.00 37.29 3.58
3388 3414 5.163468 TGTCTTTGAAATGCTTTTAGGCACA 60.163 36.000 0.00 0.00 45.36 4.57
3395 3421 6.720012 AACGTTTGTCTTTGAAATGCTTTT 57.280 29.167 0.00 0.00 0.00 2.27
3447 3473 6.431234 ACCATTTTCAGATCTACCTTTGTGTC 59.569 38.462 0.00 0.00 0.00 3.67
3470 3496 1.745653 GCAGTTGCTCCCAAATAGACC 59.254 52.381 0.00 0.00 38.21 3.85
3472 3498 2.819608 GTTGCAGTTGCTCCCAAATAGA 59.180 45.455 5.62 0.00 42.66 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.