Multiple sequence alignment - TraesCS1D01G165600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G165600 chr1D 100.000 5974 0 0 1 5974 236802273 236808246 0.000000e+00 11033.0
1 TraesCS1D01G165600 chr1D 87.735 2397 137 54 3264 5580 38550944 38553263 0.000000e+00 2652.0
2 TraesCS1D01G165600 chr1D 94.629 875 41 4 1549 2420 223524570 223523699 0.000000e+00 1351.0
3 TraesCS1D01G165600 chr1D 85.559 644 69 13 2639 3264 38550240 38550877 0.000000e+00 652.0
4 TraesCS1D01G165600 chr1D 84.000 475 42 21 778 1243 38549525 38549974 5.530000e-115 425.0
5 TraesCS1D01G165600 chr1D 98.214 168 3 0 1 168 489956231 489956064 1.630000e-75 294.0
6 TraesCS1D01G165600 chr1D 76.845 393 24 27 317 673 38549134 38549495 6.200000e-35 159.0
7 TraesCS1D01G165600 chr1B 92.995 3412 167 46 2568 5943 342115200 342118575 0.000000e+00 4911.0
8 TraesCS1D01G165600 chr1B 90.476 2058 119 26 3264 5270 58323032 58325063 0.000000e+00 2643.0
9 TraesCS1D01G165600 chr1B 89.708 1370 59 34 166 1495 342113513 342114840 0.000000e+00 1674.0
10 TraesCS1D01G165600 chr1B 83.931 641 70 20 2639 3264 58322346 58322968 3.100000e-162 582.0
11 TraesCS1D01G165600 chr1B 83.832 501 42 23 766 1251 58321547 58322023 1.980000e-119 440.0
12 TraesCS1D01G165600 chr1B 79.112 383 29 24 317 673 58321175 58321532 3.630000e-52 217.0
13 TraesCS1D01G165600 chr1B 87.097 124 9 2 5335 5451 58325282 58325405 3.760000e-27 134.0
14 TraesCS1D01G165600 chr1A 93.750 2752 131 19 2567 5308 308815279 308812559 0.000000e+00 4091.0
15 TraesCS1D01G165600 chr1A 89.244 2036 128 35 3264 5252 37479833 37481824 0.000000e+00 2462.0
16 TraesCS1D01G165600 chr1A 90.382 759 24 15 169 900 308816947 308816211 0.000000e+00 952.0
17 TraesCS1D01G165600 chr1A 90.979 654 32 14 5300 5945 308812525 308811891 0.000000e+00 856.0
18 TraesCS1D01G165600 chr1A 83.625 629 39 23 913 1510 308816156 308815561 3.170000e-147 532.0
19 TraesCS1D01G165600 chr1A 81.527 655 67 26 2639 3264 37479140 37479769 1.930000e-134 490.0
20 TraesCS1D01G165600 chr1A 84.008 494 42 19 774 1251 37478337 37478809 1.980000e-119 440.0
21 TraesCS1D01G165600 chr1A 81.492 362 26 24 317 671 37478010 37478337 5.940000e-65 259.0
22 TraesCS1D01G165600 chr1A 94.231 52 3 0 5300 5351 37481853 37481904 4.960000e-11 80.5
23 TraesCS1D01G165600 chr1A 88.333 60 7 0 1408 1467 37478865 37478924 8.310000e-09 73.1
24 TraesCS1D01G165600 chr7D 94.641 877 41 4 1547 2420 465340564 465339691 0.000000e+00 1354.0
25 TraesCS1D01G165600 chr7D 94.622 874 41 4 1550 2420 463883617 463882747 0.000000e+00 1349.0
26 TraesCS1D01G165600 chr7D 85.210 1217 168 7 3806 5014 76732930 76731718 0.000000e+00 1240.0
27 TraesCS1D01G165600 chr7D 80.000 220 26 11 1025 1230 76733927 76733712 4.820000e-31 147.0
28 TraesCS1D01G165600 chr2D 94.641 877 39 5 1549 2420 418071591 418070718 0.000000e+00 1352.0
29 TraesCS1D01G165600 chr2D 94.514 875 42 4 1549 2420 97865389 97866260 0.000000e+00 1345.0
30 TraesCS1D01G165600 chr2D 89.954 866 60 12 1578 2420 451964746 451963885 0.000000e+00 1092.0
31 TraesCS1D01G165600 chr7A 94.629 875 41 4 1549 2420 232384022 232384893 0.000000e+00 1351.0
32 TraesCS1D01G165600 chr7A 85.901 1227 159 12 3836 5053 80853315 80852094 0.000000e+00 1295.0
33 TraesCS1D01G165600 chr7A 92.457 875 60 4 1549 2420 621621250 621620379 0.000000e+00 1245.0
34 TraesCS1D01G165600 chr7A 78.319 226 27 14 1025 1235 80854346 80854128 6.290000e-25 126.0
35 TraesCS1D01G165600 chr5A 94.521 876 42 4 1548 2420 130129650 130130522 0.000000e+00 1347.0
36 TraesCS1D01G165600 chr5A 94.514 875 42 4 1549 2420 483276579 483275708 0.000000e+00 1345.0
37 TraesCS1D01G165600 chr5A 94.514 875 42 4 1549 2420 602839192 602838321 0.000000e+00 1345.0
38 TraesCS1D01G165600 chr7B 85.855 1216 162 6 3806 5014 23441800 23440588 0.000000e+00 1284.0
39 TraesCS1D01G165600 chr7B 79.556 225 27 12 1025 1235 23442823 23442604 6.240000e-30 143.0
40 TraesCS1D01G165600 chr3D 92.997 871 57 3 1552 2420 460636223 460637091 0.000000e+00 1267.0
41 TraesCS1D01G165600 chr3D 85.177 877 106 15 1549 2404 603750357 603751230 0.000000e+00 878.0
42 TraesCS1D01G165600 chr4B 92.515 855 59 4 1552 2404 384838187 384839038 0.000000e+00 1219.0
43 TraesCS1D01G165600 chr4D 91.858 872 67 3 1551 2420 119908102 119908971 0.000000e+00 1214.0
44 TraesCS1D01G165600 chr5B 90.303 165 11 3 1 165 518317588 518317747 1.690000e-50 211.0
45 TraesCS1D01G165600 chr3A 97.297 74 2 0 1 74 516291385 516291312 6.290000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G165600 chr1D 236802273 236808246 5973 False 11033.00 11033 100.00000 1 5974 1 chr1D.!!$F1 5973
1 TraesCS1D01G165600 chr1D 223523699 223524570 871 True 1351.00 1351 94.62900 1549 2420 1 chr1D.!!$R1 871
2 TraesCS1D01G165600 chr1D 38549134 38553263 4129 False 972.00 2652 83.53475 317 5580 4 chr1D.!!$F2 5263
3 TraesCS1D01G165600 chr1B 342113513 342118575 5062 False 3292.50 4911 91.35150 166 5943 2 chr1B.!!$F2 5777
4 TraesCS1D01G165600 chr1B 58321175 58325405 4230 False 803.20 2643 84.88960 317 5451 5 chr1B.!!$F1 5134
5 TraesCS1D01G165600 chr1A 308811891 308816947 5056 True 1607.75 4091 89.68400 169 5945 4 chr1A.!!$R1 5776
6 TraesCS1D01G165600 chr1A 37478010 37481904 3894 False 634.10 2462 86.47250 317 5351 6 chr1A.!!$F1 5034
7 TraesCS1D01G165600 chr7D 465339691 465340564 873 True 1354.00 1354 94.64100 1547 2420 1 chr7D.!!$R2 873
8 TraesCS1D01G165600 chr7D 463882747 463883617 870 True 1349.00 1349 94.62200 1550 2420 1 chr7D.!!$R1 870
9 TraesCS1D01G165600 chr7D 76731718 76733927 2209 True 693.50 1240 82.60500 1025 5014 2 chr7D.!!$R3 3989
10 TraesCS1D01G165600 chr2D 418070718 418071591 873 True 1352.00 1352 94.64100 1549 2420 1 chr2D.!!$R1 871
11 TraesCS1D01G165600 chr2D 97865389 97866260 871 False 1345.00 1345 94.51400 1549 2420 1 chr2D.!!$F1 871
12 TraesCS1D01G165600 chr2D 451963885 451964746 861 True 1092.00 1092 89.95400 1578 2420 1 chr2D.!!$R2 842
13 TraesCS1D01G165600 chr7A 232384022 232384893 871 False 1351.00 1351 94.62900 1549 2420 1 chr7A.!!$F1 871
14 TraesCS1D01G165600 chr7A 621620379 621621250 871 True 1245.00 1245 92.45700 1549 2420 1 chr7A.!!$R1 871
15 TraesCS1D01G165600 chr7A 80852094 80854346 2252 True 710.50 1295 82.11000 1025 5053 2 chr7A.!!$R2 4028
16 TraesCS1D01G165600 chr5A 130129650 130130522 872 False 1347.00 1347 94.52100 1548 2420 1 chr5A.!!$F1 872
17 TraesCS1D01G165600 chr5A 483275708 483276579 871 True 1345.00 1345 94.51400 1549 2420 1 chr5A.!!$R1 871
18 TraesCS1D01G165600 chr5A 602838321 602839192 871 True 1345.00 1345 94.51400 1549 2420 1 chr5A.!!$R2 871
19 TraesCS1D01G165600 chr7B 23440588 23442823 2235 True 713.50 1284 82.70550 1025 5014 2 chr7B.!!$R1 3989
20 TraesCS1D01G165600 chr3D 460636223 460637091 868 False 1267.00 1267 92.99700 1552 2420 1 chr3D.!!$F1 868
21 TraesCS1D01G165600 chr3D 603750357 603751230 873 False 878.00 878 85.17700 1549 2404 1 chr3D.!!$F2 855
22 TraesCS1D01G165600 chr4B 384838187 384839038 851 False 1219.00 1219 92.51500 1552 2404 1 chr4B.!!$F1 852
23 TraesCS1D01G165600 chr4D 119908102 119908971 869 False 1214.00 1214 91.85800 1551 2420 1 chr4D.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1122 0.383231 GCTGCTGCTCTTGTTGTTGT 59.617 50.0 8.53 0.00 36.03 3.32 F
1277 1466 0.185175 TCCTCTAGCCCTGCGATGTA 59.815 55.0 0.00 0.00 0.00 2.29 F
2123 2533 0.254462 TTGGCGCCACTTCATCCATA 59.746 50.0 32.95 7.48 0.00 2.74 F
3625 4292 0.037882 TCGAAGAGGCTGCTGTTCTG 60.038 55.0 0.00 0.00 0.00 3.02 F
3793 4462 0.100325 TTTGGTTGCTCAAGTGTGCG 59.900 50.0 1.35 0.00 37.35 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2580 0.392336 TTTGGGGTCAATGTTGCAGC 59.608 50.000 0.00 0.00 32.28 5.25 R
2441 2871 1.203087 TCGTCCTCCAAGTACAAGGGA 60.203 52.381 0.00 0.00 0.00 4.20 R
3801 4470 0.889994 TGGGCGTTAGAGCTTCGTTA 59.110 50.000 0.00 0.00 37.29 3.18 R
4724 5404 0.826715 CTTCCCCGATCTTCTGCAGA 59.173 55.000 13.74 13.74 35.33 4.26 R
5705 6661 0.747283 CCTCAGCAGATGAACTGGCC 60.747 60.000 0.00 0.00 45.82 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.805016 AATACAGATCATCTTCAGGACAGT 57.195 37.500 0.00 0.00 0.00 3.55
41 42 6.805016 ATACAGATCATCTTCAGGACAGTT 57.195 37.500 0.00 0.00 0.00 3.16
42 43 4.829968 ACAGATCATCTTCAGGACAGTTG 58.170 43.478 0.00 0.00 0.00 3.16
43 44 3.622163 CAGATCATCTTCAGGACAGTTGC 59.378 47.826 0.00 0.00 0.00 4.17
44 45 2.479566 TCATCTTCAGGACAGTTGCC 57.520 50.000 0.00 0.00 0.00 4.52
45 46 1.003580 TCATCTTCAGGACAGTTGCCC 59.996 52.381 0.00 0.00 0.00 5.36
46 47 1.004044 CATCTTCAGGACAGTTGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
47 48 1.140312 TCTTCAGGACAGTTGCCCTT 58.860 50.000 0.00 0.00 0.00 3.95
48 49 1.494721 TCTTCAGGACAGTTGCCCTTT 59.505 47.619 0.00 0.00 0.00 3.11
49 50 2.708861 TCTTCAGGACAGTTGCCCTTTA 59.291 45.455 0.00 0.00 0.00 1.85
50 51 3.137544 TCTTCAGGACAGTTGCCCTTTAA 59.862 43.478 0.00 0.00 0.00 1.52
51 52 3.586470 TCAGGACAGTTGCCCTTTAAA 57.414 42.857 0.00 0.00 0.00 1.52
52 53 3.904717 TCAGGACAGTTGCCCTTTAAAA 58.095 40.909 0.00 0.00 0.00 1.52
53 54 4.479158 TCAGGACAGTTGCCCTTTAAAAT 58.521 39.130 0.00 0.00 0.00 1.82
54 55 4.898861 TCAGGACAGTTGCCCTTTAAAATT 59.101 37.500 0.00 0.00 0.00 1.82
55 56 6.071984 TCAGGACAGTTGCCCTTTAAAATTA 58.928 36.000 0.00 0.00 0.00 1.40
56 57 6.723977 TCAGGACAGTTGCCCTTTAAAATTAT 59.276 34.615 0.00 0.00 0.00 1.28
57 58 7.234577 TCAGGACAGTTGCCCTTTAAAATTATT 59.765 33.333 0.00 0.00 0.00 1.40
58 59 7.331687 CAGGACAGTTGCCCTTTAAAATTATTG 59.668 37.037 0.00 0.00 0.00 1.90
59 60 7.016170 AGGACAGTTGCCCTTTAAAATTATTGT 59.984 33.333 0.00 0.00 0.00 2.71
60 61 7.117667 GGACAGTTGCCCTTTAAAATTATTGTG 59.882 37.037 0.00 0.00 0.00 3.33
61 62 7.505258 ACAGTTGCCCTTTAAAATTATTGTGT 58.495 30.769 0.00 0.00 0.00 3.72
62 63 7.990314 ACAGTTGCCCTTTAAAATTATTGTGTT 59.010 29.630 0.00 0.00 0.00 3.32
63 64 8.835439 CAGTTGCCCTTTAAAATTATTGTGTTT 58.165 29.630 0.00 0.00 0.00 2.83
67 68 9.699703 TGCCCTTTAAAATTATTGTGTTTAGAC 57.300 29.630 0.00 0.00 0.00 2.59
68 69 9.699703 GCCCTTTAAAATTATTGTGTTTAGACA 57.300 29.630 0.00 0.00 0.00 3.41
80 81 8.746922 ATTGTGTTTAGACATGCAATTACAAG 57.253 30.769 0.00 0.00 38.23 3.16
81 82 6.676950 TGTGTTTAGACATGCAATTACAAGG 58.323 36.000 0.00 0.00 38.23 3.61
82 83 6.488344 TGTGTTTAGACATGCAATTACAAGGA 59.512 34.615 0.00 0.00 38.23 3.36
83 84 7.013750 TGTGTTTAGACATGCAATTACAAGGAA 59.986 33.333 0.00 0.00 38.23 3.36
84 85 8.028938 GTGTTTAGACATGCAATTACAAGGAAT 58.971 33.333 0.00 0.00 38.23 3.01
85 86 8.584157 TGTTTAGACATGCAATTACAAGGAATT 58.416 29.630 0.00 0.00 0.00 2.17
86 87 8.863049 GTTTAGACATGCAATTACAAGGAATTG 58.137 33.333 12.37 12.37 45.63 2.32
87 88 6.594788 AGACATGCAATTACAAGGAATTGT 57.405 33.333 16.72 1.78 44.97 2.71
88 89 7.701539 AGACATGCAATTACAAGGAATTGTA 57.298 32.000 16.72 13.64 44.97 2.41
110 111 8.795786 TGTAATTCTCAATGTAAACTGTTTGC 57.204 30.769 15.69 14.52 0.00 3.68
111 112 8.409371 TGTAATTCTCAATGTAAACTGTTTGCA 58.591 29.630 22.85 22.85 39.53 4.08
129 130 9.791820 CTGTTTGCAGTATGAATGAATTAATGA 57.208 29.630 0.00 0.00 39.69 2.57
134 135 9.752961 TGCAGTATGAATGAATTAATGAATTGG 57.247 29.630 0.00 0.00 39.69 3.16
135 136 8.706035 GCAGTATGAATGAATTAATGAATTGGC 58.294 33.333 0.00 0.00 39.69 4.52
136 137 8.908678 CAGTATGAATGAATTAATGAATTGGCG 58.091 33.333 0.00 0.00 39.69 5.69
137 138 6.774354 ATGAATGAATTAATGAATTGGCGC 57.226 33.333 0.00 0.00 35.33 6.53
138 139 5.049167 TGAATGAATTAATGAATTGGCGCC 58.951 37.500 22.73 22.73 35.33 6.53
139 140 4.669206 ATGAATTAATGAATTGGCGCCA 57.331 36.364 29.03 29.03 35.33 5.69
140 141 4.669206 TGAATTAATGAATTGGCGCCAT 57.331 36.364 33.25 17.92 35.33 4.40
141 142 5.781210 TGAATTAATGAATTGGCGCCATA 57.219 34.783 33.25 21.38 35.33 2.74
142 143 5.771469 TGAATTAATGAATTGGCGCCATAG 58.229 37.500 33.25 0.00 35.33 2.23
143 144 4.789012 ATTAATGAATTGGCGCCATAGG 57.211 40.909 33.25 0.00 0.00 2.57
144 145 0.675633 AATGAATTGGCGCCATAGGC 59.324 50.000 33.25 19.97 46.75 3.93
153 154 3.140141 GCCATAGGCGCCTTTGCA 61.140 61.111 37.74 18.22 39.62 4.08
154 155 2.492773 GCCATAGGCGCCTTTGCAT 61.493 57.895 37.74 19.94 39.62 3.96
155 156 1.361271 CCATAGGCGCCTTTGCATG 59.639 57.895 37.74 29.65 37.32 4.06
156 157 1.386525 CCATAGGCGCCTTTGCATGT 61.387 55.000 37.74 10.55 37.32 3.21
157 158 0.457035 CATAGGCGCCTTTGCATGTT 59.543 50.000 37.74 9.67 37.32 2.71
158 159 0.740737 ATAGGCGCCTTTGCATGTTC 59.259 50.000 37.74 0.00 37.32 3.18
159 160 0.607762 TAGGCGCCTTTGCATGTTCA 60.608 50.000 37.74 9.65 37.32 3.18
160 161 1.006337 GGCGCCTTTGCATGTTCAA 60.006 52.632 22.15 0.00 37.32 2.69
161 162 0.599728 GGCGCCTTTGCATGTTCAAA 60.600 50.000 22.15 0.00 37.32 2.69
162 163 1.216122 GCGCCTTTGCATGTTCAAAA 58.784 45.000 0.00 0.00 35.75 2.44
163 164 1.596727 GCGCCTTTGCATGTTCAAAAA 59.403 42.857 0.00 0.00 35.75 1.94
200 201 1.680651 CAGTCACCGGGAGCTCTCT 60.681 63.158 12.81 0.00 0.00 3.10
452 490 0.609406 TGTCCCCACTGACGAGAGAG 60.609 60.000 0.00 0.00 38.11 3.20
626 688 2.394565 TACGAACCCAACCCAACCCG 62.395 60.000 0.00 0.00 0.00 5.28
768 842 2.686835 AGCTGCCAGACTCCCTCC 60.687 66.667 0.00 0.00 0.00 4.30
778 852 1.569072 AGACTCCCTCCTCTCCTTCTC 59.431 57.143 0.00 0.00 0.00 2.87
986 1121 0.659417 CGCTGCTGCTCTTGTTGTTG 60.659 55.000 14.03 0.00 36.97 3.33
987 1122 0.383231 GCTGCTGCTCTTGTTGTTGT 59.617 50.000 8.53 0.00 36.03 3.32
988 1123 1.202336 GCTGCTGCTCTTGTTGTTGTT 60.202 47.619 8.53 0.00 36.03 2.83
989 1124 2.456989 CTGCTGCTCTTGTTGTTGTTG 58.543 47.619 0.00 0.00 0.00 3.33
1251 1440 2.181525 CGAATTTGCCGCCCTTGG 59.818 61.111 0.00 0.00 0.00 3.61
1253 1442 1.671166 GAATTTGCCGCCCTTGGTT 59.329 52.632 0.00 0.00 0.00 3.67
1277 1466 0.185175 TCCTCTAGCCCTGCGATGTA 59.815 55.000 0.00 0.00 0.00 2.29
1278 1467 1.040646 CCTCTAGCCCTGCGATGTAA 58.959 55.000 0.00 0.00 0.00 2.41
1295 1503 4.116747 TGTAAAAGGTTGTGCAGGTTTG 57.883 40.909 0.00 0.00 0.00 2.93
1331 1539 3.471680 GAATTAGGGGATCTCTGTGTGC 58.528 50.000 0.00 0.00 0.00 4.57
1337 1545 1.527034 GGATCTCTGTGTGCTTGCAA 58.473 50.000 0.00 0.00 0.00 4.08
1344 1552 1.658409 GTGTGCTTGCAACCGAAGC 60.658 57.895 0.00 0.00 45.12 3.86
1349 1557 2.203337 TTGCAACCGAAGCTGGCT 60.203 55.556 0.00 0.00 0.00 4.75
1364 1572 0.746063 TGGCTCAAGTTTTGGTGCAG 59.254 50.000 0.00 0.00 34.14 4.41
1399 1607 3.438183 GTGGGTAGTCCTTGGAGAGTTA 58.562 50.000 0.00 0.00 36.20 2.24
1402 1610 4.202749 TGGGTAGTCCTTGGAGAGTTAGAA 60.203 45.833 0.00 0.00 36.20 2.10
1443 1681 2.550639 CCCCCAGTTTTGCTTTGATTGG 60.551 50.000 0.00 0.00 0.00 3.16
1448 1686 3.001533 CAGTTTTGCTTTGATTGGTGTGC 59.998 43.478 0.00 0.00 0.00 4.57
1456 1701 1.171549 TGATTGGTGTGCGCACATGT 61.172 50.000 42.22 27.98 46.95 3.21
1459 1704 1.233950 TTGGTGTGCGCACATGTAGG 61.234 55.000 42.22 0.00 46.95 3.18
1470 1715 3.119884 CGCACATGTAGGATTTTTGCAGA 60.120 43.478 0.00 0.00 0.00 4.26
1507 1847 8.000435 GTCGTTACTAATTAGTTGTGTTCACAC 59.000 37.037 22.66 2.93 41.03 3.82
1509 1849 7.170320 CGTTACTAATTAGTTGTGTTCACACCT 59.830 37.037 22.66 6.68 40.50 4.00
1516 1867 3.807622 AGTTGTGTTCACACCTCATTACG 59.192 43.478 7.61 0.00 45.88 3.18
1533 1918 7.495934 CCTCATTACGGAATAAGAGACAATTGT 59.504 37.037 11.78 11.78 0.00 2.71
1542 1927 8.145122 GGAATAAGAGACAATTGTACTAGGAGG 58.855 40.741 11.95 0.00 0.00 4.30
1543 1928 8.840200 AATAAGAGACAATTGTACTAGGAGGA 57.160 34.615 11.95 0.00 0.00 3.71
1544 1929 6.532988 AAGAGACAATTGTACTAGGAGGAC 57.467 41.667 11.95 0.00 0.00 3.85
1565 1950 5.974751 GGACGATACAACAACAACAACAAAT 59.025 36.000 0.00 0.00 0.00 2.32
1601 1986 0.691413 AGTTGGGGTAGGCTAGAGGC 60.691 60.000 0.00 0.00 41.43 4.70
1632 2017 1.478510 AGATCTCGCGACCAACTCATT 59.521 47.619 3.71 0.00 0.00 2.57
1677 2065 1.298340 CACGCACCCCTGTCCATAA 59.702 57.895 0.00 0.00 0.00 1.90
1684 2072 3.308188 GCACCCCTGTCCATAACTAGTTT 60.308 47.826 14.49 0.00 0.00 2.66
1736 2124 1.946984 TAACGGACTCCTCCCATGTT 58.053 50.000 0.00 0.00 31.93 2.71
1744 2132 4.383770 GGACTCCTCCCATGTTAAATTCGA 60.384 45.833 0.00 0.00 0.00 3.71
1764 2152 1.276622 TCTACCCCAACCTCTCTTGC 58.723 55.000 0.00 0.00 0.00 4.01
1789 2177 2.125912 CGCACGCCTTAGCTGTCT 60.126 61.111 0.00 0.00 36.60 3.41
1846 2254 0.770499 TGCCCAAACCATCTCAGACA 59.230 50.000 0.00 0.00 0.00 3.41
1859 2267 4.687901 TCTCAGACAATGTTGGACAAGA 57.312 40.909 0.00 0.00 0.00 3.02
1866 2274 5.936956 AGACAATGTTGGACAAGATTCTCTC 59.063 40.000 4.64 1.68 32.78 3.20
1867 2275 5.624159 ACAATGTTGGACAAGATTCTCTCA 58.376 37.500 4.64 0.00 32.78 3.27
1868 2276 6.064060 ACAATGTTGGACAAGATTCTCTCAA 58.936 36.000 4.64 0.00 32.78 3.02
1902 2312 8.258708 GCTACCCCAATTCTTATCTCGTATATT 58.741 37.037 0.00 0.00 0.00 1.28
1903 2313 9.587772 CTACCCCAATTCTTATCTCGTATATTG 57.412 37.037 0.00 0.00 0.00 1.90
1952 2362 1.340405 GGCCACACATCCATCTCAACT 60.340 52.381 0.00 0.00 0.00 3.16
2014 2424 1.468506 TAGTCGGCCAACACTCAGCA 61.469 55.000 2.24 0.00 0.00 4.41
2020 2430 1.089920 GCCAACACTCAGCACCATAG 58.910 55.000 0.00 0.00 0.00 2.23
2056 2466 1.888512 ACCGCCGTCTTGTAGAACTTA 59.111 47.619 0.00 0.00 0.00 2.24
2123 2533 0.254462 TTGGCGCCACTTCATCCATA 59.746 50.000 32.95 7.48 0.00 2.74
2126 2536 0.529773 GCGCCACTTCATCCATACGA 60.530 55.000 0.00 0.00 0.00 3.43
2167 2580 5.472478 CACATCTTCATCAATACCCATCCTG 59.528 44.000 0.00 0.00 0.00 3.86
2252 2680 0.686112 CCTCCTCCTCCTCACACCTC 60.686 65.000 0.00 0.00 0.00 3.85
2257 2685 0.680280 TCCTCCTCACACCTCGTAGC 60.680 60.000 0.00 0.00 0.00 3.58
2433 2863 4.843516 GGATATCTCCCATGGGATATCTCC 59.156 50.000 33.85 32.69 44.69 3.71
2434 2864 5.402410 GGATATCTCCCATGGGATATCTCCT 60.402 48.000 34.46 20.96 44.69 3.69
2435 2865 3.951340 TCTCCCATGGGATATCTCCTT 57.049 47.619 33.89 0.00 44.24 3.36
2436 2866 3.796111 TCTCCCATGGGATATCTCCTTC 58.204 50.000 33.89 0.00 44.24 3.46
2437 2867 3.407540 TCTCCCATGGGATATCTCCTTCT 59.592 47.826 33.89 0.00 44.24 2.85
2438 2868 4.612496 TCTCCCATGGGATATCTCCTTCTA 59.388 45.833 33.89 6.87 44.24 2.10
2439 2869 5.259732 TCTCCCATGGGATATCTCCTTCTAT 59.740 44.000 33.89 0.00 44.24 1.98
2440 2870 6.454986 TCTCCCATGGGATATCTCCTTCTATA 59.545 42.308 33.89 5.69 44.24 1.31
2441 2871 7.133287 TCTCCCATGGGATATCTCCTTCTATAT 59.867 40.741 33.89 0.00 44.24 0.86
2442 2872 7.309091 TCCCATGGGATATCTCCTTCTATATC 58.691 42.308 30.62 0.00 41.74 1.63
2450 2880 9.138596 GGATATCTCCTTCTATATCCCTTGTAC 57.861 40.741 2.05 0.00 44.42 2.90
2451 2881 9.930158 GATATCTCCTTCTATATCCCTTGTACT 57.070 37.037 0.00 0.00 31.59 2.73
2453 2883 7.841282 TCTCCTTCTATATCCCTTGTACTTG 57.159 40.000 0.00 0.00 0.00 3.16
2454 2884 6.782988 TCTCCTTCTATATCCCTTGTACTTGG 59.217 42.308 0.00 0.00 0.00 3.61
2455 2885 6.689561 TCCTTCTATATCCCTTGTACTTGGA 58.310 40.000 6.34 4.10 0.00 3.53
2456 2886 6.782988 TCCTTCTATATCCCTTGTACTTGGAG 59.217 42.308 6.34 0.00 0.00 3.86
2457 2887 6.014156 CCTTCTATATCCCTTGTACTTGGAGG 60.014 46.154 6.34 3.06 0.00 4.30
2458 2888 6.289482 TCTATATCCCTTGTACTTGGAGGA 57.711 41.667 6.34 0.76 32.11 3.71
2459 2889 6.075984 TCTATATCCCTTGTACTTGGAGGAC 58.924 44.000 6.34 0.00 32.11 3.85
2470 2900 5.833667 TGTACTTGGAGGACGATATCTTGAT 59.166 40.000 0.34 0.00 0.00 2.57
2479 2909 6.653989 AGGACGATATCTTGATGAAAACCTT 58.346 36.000 0.34 0.00 0.00 3.50
2509 2944 3.414549 TTTTTCTGCACTGGTCGAAAC 57.585 42.857 0.00 0.00 0.00 2.78
2510 2945 2.031258 TTTCTGCACTGGTCGAAACA 57.969 45.000 0.00 0.00 0.00 2.83
2534 2969 2.076863 GCAAGCTGTAGTGGTAACTGG 58.923 52.381 0.00 0.00 37.19 4.00
2600 3140 6.035650 ACGTATGTTCGTTGGTGATGAATAAG 59.964 38.462 0.00 0.00 41.37 1.73
2602 3142 4.068599 TGTTCGTTGGTGATGAATAAGCA 58.931 39.130 0.00 0.00 35.79 3.91
2656 3201 4.057432 ACATGGTGCTTAACAAAATGTGC 58.943 39.130 0.00 0.00 36.00 4.57
2673 3219 7.447374 AAATGTGCTAATTAGTGTTACAGCA 57.553 32.000 13.91 2.86 0.00 4.41
2701 3247 5.578157 AAAGGAGCCTACCTGACTAAAAA 57.422 39.130 0.00 0.00 40.49 1.94
2725 3275 7.944729 AAAGCCAAATACTAAGATCACACAT 57.055 32.000 0.00 0.00 0.00 3.21
2741 3291 8.420222 AGATCACACATGATAAGAAGGTAAGAG 58.580 37.037 0.00 0.00 46.01 2.85
2742 3292 7.718334 TCACACATGATAAGAAGGTAAGAGA 57.282 36.000 0.00 0.00 0.00 3.10
2745 3295 6.098982 ACACATGATAAGAAGGTAAGAGAGGG 59.901 42.308 0.00 0.00 0.00 4.30
2754 3304 3.367321 AGGTAAGAGAGGGCAGTAGTTC 58.633 50.000 0.00 0.00 0.00 3.01
2765 3315 2.229784 GGCAGTAGTTCTTGCATGCTTT 59.770 45.455 20.33 0.61 34.19 3.51
2784 3334 6.769512 TGCTTTAGGTATCAGATATTGACCC 58.230 40.000 0.00 0.00 38.99 4.46
2787 3337 7.550906 GCTTTAGGTATCAGATATTGACCCATC 59.449 40.741 0.00 0.00 38.99 3.51
2808 3363 1.963515 ACAGGAAAAGTGGGTTCATGC 59.036 47.619 0.00 0.00 39.72 4.06
2838 3396 5.945155 TGTTGTTTTGTTCTGTAACCTGAC 58.055 37.500 0.00 0.00 34.49 3.51
2839 3397 5.473846 TGTTGTTTTGTTCTGTAACCTGACA 59.526 36.000 0.00 0.00 34.49 3.58
2854 3413 0.613260 TGACACTCCCGCTGCTAAAT 59.387 50.000 0.00 0.00 0.00 1.40
2856 3415 0.613260 ACACTCCCGCTGCTAAATCA 59.387 50.000 0.00 0.00 0.00 2.57
2918 3477 1.068588 TGTGTGTGACTCCACTAGTGC 59.931 52.381 17.86 4.33 43.55 4.40
2944 3505 6.113411 AGCACGCAATATACCCCTTATAATC 58.887 40.000 0.00 0.00 0.00 1.75
2946 3507 6.037172 GCACGCAATATACCCCTTATAATCAG 59.963 42.308 0.00 0.00 0.00 2.90
2947 3508 7.327975 CACGCAATATACCCCTTATAATCAGA 58.672 38.462 0.00 0.00 0.00 3.27
2948 3509 7.822334 CACGCAATATACCCCTTATAATCAGAA 59.178 37.037 0.00 0.00 0.00 3.02
2949 3510 8.548877 ACGCAATATACCCCTTATAATCAGAAT 58.451 33.333 0.00 0.00 0.00 2.40
2950 3511 9.396022 CGCAATATACCCCTTATAATCAGAATT 57.604 33.333 0.00 0.00 0.00 2.17
3000 3562 2.972713 TGAAAGTAGCTGTGGAAGGAGT 59.027 45.455 0.00 0.00 0.00 3.85
3003 3565 0.250513 GTAGCTGTGGAAGGAGTGGG 59.749 60.000 0.00 0.00 0.00 4.61
3009 3574 2.284405 GGAAGGAGTGGGACCGGA 60.284 66.667 9.46 0.00 0.00 5.14
3045 3610 2.420058 TCAGCTCCATCTAGTCGACA 57.580 50.000 19.50 2.84 0.00 4.35
3079 3644 2.237143 CTCATGAGGACTTTGCCCTGTA 59.763 50.000 15.38 0.00 33.36 2.74
3177 3750 5.464030 AGCAGTAGTTTTTCCTACTCGAA 57.536 39.130 0.00 0.00 44.49 3.71
3304 3944 1.141657 TCCTTCTCTGTGCTTGCTTGT 59.858 47.619 0.00 0.00 0.00 3.16
3411 4074 9.918630 AGTCAAATTTAGTTCCATTCTTTCATG 57.081 29.630 0.00 0.00 0.00 3.07
3625 4292 0.037882 TCGAAGAGGCTGCTGTTCTG 60.038 55.000 0.00 0.00 0.00 3.02
3758 4427 4.919774 TTGCCCTGTCCATACTCTTTTA 57.080 40.909 0.00 0.00 0.00 1.52
3759 4428 5.450818 TTGCCCTGTCCATACTCTTTTAT 57.549 39.130 0.00 0.00 0.00 1.40
3793 4462 0.100325 TTTGGTTGCTCAAGTGTGCG 59.900 50.000 1.35 0.00 37.35 5.34
3801 4470 3.605634 TGCTCAAGTGTGCGGTATTATT 58.394 40.909 1.35 0.00 37.35 1.40
3804 4473 5.064198 TGCTCAAGTGTGCGGTATTATTAAC 59.936 40.000 1.35 0.00 37.35 2.01
4290 4970 3.219198 GGGTGGATGCCATTCGCC 61.219 66.667 7.05 7.05 35.28 5.54
4724 5404 0.453793 CATCCGAGCTCGAGAAGTGT 59.546 55.000 36.59 13.95 43.02 3.55
4990 5677 0.681733 TGAGACCAGGAGACACTTGC 59.318 55.000 0.00 0.00 0.00 4.01
5052 5756 9.349713 TCGCTACATTCTAATCCCAATATTTTT 57.650 29.630 0.00 0.00 0.00 1.94
5053 5757 9.612620 CGCTACATTCTAATCCCAATATTTTTC 57.387 33.333 0.00 0.00 0.00 2.29
5108 5813 0.254462 TGCCGTGAATTAGCCATGGA 59.746 50.000 18.40 0.00 41.97 3.41
5206 5924 0.698238 TGCTGTGGTTAGAGCCCAAT 59.302 50.000 0.00 0.00 42.22 3.16
5388 6306 2.221981 CGACTCCTTTCTTCAGTGTTGC 59.778 50.000 0.00 0.00 0.00 4.17
5462 6387 4.448732 TCAATGATCAGTTCGCCGATTATG 59.551 41.667 0.09 0.00 0.00 1.90
5552 6508 1.405105 TGGCGAATTTGCATCTTAGGC 59.595 47.619 19.31 7.96 36.28 3.93
5555 6511 2.542411 GCGAATTTGCATCTTAGGCCTG 60.542 50.000 17.99 0.00 34.15 4.85
5570 6526 2.031012 CTGGTTCTCTGTGCGGCA 59.969 61.111 0.00 0.00 0.00 5.69
5664 6620 3.561725 CCTGGTGCTAGCTTTACTAATGC 59.438 47.826 17.23 0.00 0.00 3.56
5665 6621 4.446371 CTGGTGCTAGCTTTACTAATGCT 58.554 43.478 17.23 12.46 43.39 3.79
5666 6622 4.191544 TGGTGCTAGCTTTACTAATGCTG 58.808 43.478 17.23 9.26 41.39 4.41
5678 6634 3.204526 ACTAATGCTGCTGATTGAGAGC 58.795 45.455 0.00 0.00 36.95 4.09
5705 6661 1.005340 GGAATCAAGAGTGCAGCGAG 58.995 55.000 0.00 0.00 0.00 5.03
5723 6679 0.252479 AGGCCAGTTCATCTGCTGAG 59.748 55.000 5.01 0.00 42.38 3.35
5726 6682 0.747283 CCAGTTCATCTGCTGAGGGC 60.747 60.000 5.39 0.00 42.38 5.19
5869 6836 2.154854 AACTGTCACACATCACGAGG 57.845 50.000 0.00 0.00 0.00 4.63
5884 6851 1.204146 CGAGGGATTCAGGGAGGAAA 58.796 55.000 0.00 0.00 0.00 3.13
5907 6874 2.288025 GGGTTCAGGTAGTCGGCCA 61.288 63.158 2.24 0.00 0.00 5.36
5924 6891 1.583054 CCAGACTTTATACCGCTGCC 58.417 55.000 0.00 0.00 0.00 4.85
5930 6897 1.593006 CTTTATACCGCTGCCGAGTTG 59.407 52.381 0.00 0.00 36.29 3.16
5945 6912 3.961651 TTGGGTAGGGGCTGGGGA 61.962 66.667 0.00 0.00 0.00 4.81
5946 6913 3.525348 TTGGGTAGGGGCTGGGGAA 62.525 63.158 0.00 0.00 0.00 3.97
5947 6914 2.369706 GGGTAGGGGCTGGGGAAT 60.370 66.667 0.00 0.00 0.00 3.01
5948 6915 1.073242 GGGTAGGGGCTGGGGAATA 60.073 63.158 0.00 0.00 0.00 1.75
5949 6916 1.134438 GGGTAGGGGCTGGGGAATAG 61.134 65.000 0.00 0.00 0.00 1.73
5950 6917 1.134438 GGTAGGGGCTGGGGAATAGG 61.134 65.000 0.00 0.00 0.00 2.57
5951 6918 0.401541 GTAGGGGCTGGGGAATAGGT 60.402 60.000 0.00 0.00 0.00 3.08
5952 6919 0.401395 TAGGGGCTGGGGAATAGGTG 60.401 60.000 0.00 0.00 0.00 4.00
5953 6920 2.768022 GGGGCTGGGGAATAGGTGG 61.768 68.421 0.00 0.00 0.00 4.61
5954 6921 1.696314 GGGCTGGGGAATAGGTGGA 60.696 63.158 0.00 0.00 0.00 4.02
5955 6922 1.068352 GGGCTGGGGAATAGGTGGAT 61.068 60.000 0.00 0.00 0.00 3.41
5956 6923 0.402121 GGCTGGGGAATAGGTGGATC 59.598 60.000 0.00 0.00 0.00 3.36
5957 6924 1.439543 GCTGGGGAATAGGTGGATCT 58.560 55.000 0.00 0.00 0.00 2.75
5958 6925 1.072965 GCTGGGGAATAGGTGGATCTG 59.927 57.143 0.00 0.00 0.00 2.90
5959 6926 2.694397 CTGGGGAATAGGTGGATCTGA 58.306 52.381 0.00 0.00 0.00 3.27
5960 6927 3.048600 CTGGGGAATAGGTGGATCTGAA 58.951 50.000 0.00 0.00 0.00 3.02
5961 6928 3.048600 TGGGGAATAGGTGGATCTGAAG 58.951 50.000 0.00 0.00 0.00 3.02
5962 6929 2.224646 GGGGAATAGGTGGATCTGAAGC 60.225 54.545 0.00 0.00 0.00 3.86
5963 6930 2.708325 GGGAATAGGTGGATCTGAAGCT 59.292 50.000 0.00 0.00 0.00 3.74
5964 6931 3.244387 GGGAATAGGTGGATCTGAAGCTC 60.244 52.174 0.00 0.00 0.00 4.09
5965 6932 3.645687 GGAATAGGTGGATCTGAAGCTCT 59.354 47.826 0.00 0.00 0.00 4.09
5966 6933 4.502950 GGAATAGGTGGATCTGAAGCTCTG 60.503 50.000 0.00 0.00 0.00 3.35
5967 6934 2.244486 AGGTGGATCTGAAGCTCTGA 57.756 50.000 0.00 0.00 0.00 3.27
5968 6935 2.544721 AGGTGGATCTGAAGCTCTGAA 58.455 47.619 0.00 0.00 0.00 3.02
5969 6936 2.235898 AGGTGGATCTGAAGCTCTGAAC 59.764 50.000 0.00 0.00 0.00 3.18
5970 6937 2.626840 GTGGATCTGAAGCTCTGAACC 58.373 52.381 0.00 0.00 37.64 3.62
5971 6938 2.027745 GTGGATCTGAAGCTCTGAACCA 60.028 50.000 13.59 13.59 42.12 3.67
5972 6939 2.639347 TGGATCTGAAGCTCTGAACCAA 59.361 45.455 14.54 4.76 41.69 3.67
5973 6940 3.265221 TGGATCTGAAGCTCTGAACCAAT 59.735 43.478 14.54 0.00 41.69 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.932610 ACTGTCCTGAAGATGATCTGTATTATT 58.067 33.333 0.00 0.00 0.00 1.40
15 16 8.489676 ACTGTCCTGAAGATGATCTGTATTAT 57.510 34.615 0.00 0.00 0.00 1.28
16 17 7.904558 ACTGTCCTGAAGATGATCTGTATTA 57.095 36.000 0.00 0.00 0.00 0.98
17 18 6.805016 ACTGTCCTGAAGATGATCTGTATT 57.195 37.500 0.00 0.00 0.00 1.89
18 19 6.580788 CAACTGTCCTGAAGATGATCTGTAT 58.419 40.000 0.00 0.00 0.00 2.29
19 20 5.625426 GCAACTGTCCTGAAGATGATCTGTA 60.625 44.000 0.00 0.00 0.00 2.74
20 21 4.829968 CAACTGTCCTGAAGATGATCTGT 58.170 43.478 0.00 0.00 0.00 3.41
21 22 3.622163 GCAACTGTCCTGAAGATGATCTG 59.378 47.826 0.00 0.00 0.00 2.90
22 23 3.370315 GGCAACTGTCCTGAAGATGATCT 60.370 47.826 0.00 0.00 0.00 2.75
23 24 2.941720 GGCAACTGTCCTGAAGATGATC 59.058 50.000 0.00 0.00 0.00 2.92
24 25 2.356535 GGGCAACTGTCCTGAAGATGAT 60.357 50.000 0.00 0.00 36.72 2.45
25 26 1.003580 GGGCAACTGTCCTGAAGATGA 59.996 52.381 0.00 0.00 36.72 2.92
26 27 1.457346 GGGCAACTGTCCTGAAGATG 58.543 55.000 0.00 0.00 36.72 2.90
27 28 3.965888 GGGCAACTGTCCTGAAGAT 57.034 52.632 0.00 0.00 36.72 2.40
34 35 7.117667 CACAATAATTTTAAAGGGCAACTGTCC 59.882 37.037 0.00 0.00 40.99 4.02
35 36 7.655732 ACACAATAATTTTAAAGGGCAACTGTC 59.344 33.333 0.00 0.00 0.00 3.51
36 37 7.505258 ACACAATAATTTTAAAGGGCAACTGT 58.495 30.769 0.00 0.00 0.00 3.55
37 38 7.961325 ACACAATAATTTTAAAGGGCAACTG 57.039 32.000 0.00 0.00 0.00 3.16
38 39 8.972458 AAACACAATAATTTTAAAGGGCAACT 57.028 26.923 0.00 0.00 0.00 3.16
41 42 9.699703 GTCTAAACACAATAATTTTAAAGGGCA 57.300 29.630 0.00 0.00 0.00 5.36
42 43 9.699703 TGTCTAAACACAATAATTTTAAAGGGC 57.300 29.630 0.00 0.00 0.00 5.19
54 55 9.838975 CTTGTAATTGCATGTCTAAACACAATA 57.161 29.630 0.00 0.00 38.48 1.90
55 56 7.814107 CCTTGTAATTGCATGTCTAAACACAAT 59.186 33.333 0.00 0.00 38.48 2.71
56 57 7.013750 TCCTTGTAATTGCATGTCTAAACACAA 59.986 33.333 0.00 2.87 38.48 3.33
57 58 6.488344 TCCTTGTAATTGCATGTCTAAACACA 59.512 34.615 0.00 0.00 38.48 3.72
58 59 6.908825 TCCTTGTAATTGCATGTCTAAACAC 58.091 36.000 0.00 0.00 38.48 3.32
59 60 7.517614 TTCCTTGTAATTGCATGTCTAAACA 57.482 32.000 0.00 0.00 40.38 2.83
60 61 8.863049 CAATTCCTTGTAATTGCATGTCTAAAC 58.137 33.333 0.00 0.00 39.31 2.01
61 62 8.584157 ACAATTCCTTGTAATTGCATGTCTAAA 58.416 29.630 8.76 0.00 46.29 1.85
62 63 8.121305 ACAATTCCTTGTAATTGCATGTCTAA 57.879 30.769 8.76 0.00 46.29 2.10
63 64 7.701539 ACAATTCCTTGTAATTGCATGTCTA 57.298 32.000 8.76 0.00 46.29 2.59
64 65 6.594788 ACAATTCCTTGTAATTGCATGTCT 57.405 33.333 8.76 0.00 46.29 3.41
84 85 9.243637 GCAAACAGTTTACATTGAGAATTACAA 57.756 29.630 0.00 1.06 0.00 2.41
85 86 8.409371 TGCAAACAGTTTACATTGAGAATTACA 58.591 29.630 0.00 0.00 0.00 2.41
86 87 8.795786 TGCAAACAGTTTACATTGAGAATTAC 57.204 30.769 0.00 0.00 0.00 1.89
88 89 7.935338 CTGCAAACAGTTTACATTGAGAATT 57.065 32.000 0.00 0.00 39.22 2.17
108 109 9.752961 CCAATTCATTAATTCATTCATACTGCA 57.247 29.630 0.00 0.00 32.87 4.41
109 110 8.706035 GCCAATTCATTAATTCATTCATACTGC 58.294 33.333 0.00 0.00 32.87 4.40
110 111 8.908678 CGCCAATTCATTAATTCATTCATACTG 58.091 33.333 0.00 0.00 32.87 2.74
111 112 7.596248 GCGCCAATTCATTAATTCATTCATACT 59.404 33.333 0.00 0.00 32.87 2.12
112 113 7.148755 GGCGCCAATTCATTAATTCATTCATAC 60.149 37.037 24.80 0.00 32.87 2.39
113 114 6.867816 GGCGCCAATTCATTAATTCATTCATA 59.132 34.615 24.80 0.00 32.87 2.15
114 115 5.697633 GGCGCCAATTCATTAATTCATTCAT 59.302 36.000 24.80 0.00 32.87 2.57
115 116 5.049167 GGCGCCAATTCATTAATTCATTCA 58.951 37.500 24.80 0.00 32.87 2.57
116 117 5.049167 TGGCGCCAATTCATTAATTCATTC 58.951 37.500 30.74 0.00 32.87 2.67
117 118 5.021033 TGGCGCCAATTCATTAATTCATT 57.979 34.783 30.74 0.00 32.87 2.57
118 119 4.669206 TGGCGCCAATTCATTAATTCAT 57.331 36.364 30.74 0.00 32.87 2.57
119 120 4.669206 ATGGCGCCAATTCATTAATTCA 57.331 36.364 36.33 4.07 32.87 2.57
120 121 5.163513 CCTATGGCGCCAATTCATTAATTC 58.836 41.667 36.33 0.00 32.87 2.17
121 122 4.561326 GCCTATGGCGCCAATTCATTAATT 60.561 41.667 36.33 15.64 39.62 1.40
122 123 3.056607 GCCTATGGCGCCAATTCATTAAT 60.057 43.478 36.33 16.48 39.62 1.40
123 124 2.295909 GCCTATGGCGCCAATTCATTAA 59.704 45.455 36.33 6.47 39.62 1.40
124 125 1.885887 GCCTATGGCGCCAATTCATTA 59.114 47.619 36.33 19.13 39.62 1.90
125 126 0.675633 GCCTATGGCGCCAATTCATT 59.324 50.000 36.33 19.01 39.62 2.57
126 127 2.344535 GCCTATGGCGCCAATTCAT 58.655 52.632 36.33 19.86 39.62 2.57
127 128 3.840437 GCCTATGGCGCCAATTCA 58.160 55.556 36.33 17.76 39.62 2.57
136 137 2.492773 ATGCAAAGGCGCCTATGGC 61.493 57.895 33.07 30.87 46.75 4.40
137 138 1.361271 CATGCAAAGGCGCCTATGG 59.639 57.895 33.07 22.65 45.35 2.74
138 139 0.457035 AACATGCAAAGGCGCCTATG 59.543 50.000 33.07 29.79 45.35 2.23
139 140 0.740737 GAACATGCAAAGGCGCCTAT 59.259 50.000 33.07 17.46 45.35 2.57
140 141 0.607762 TGAACATGCAAAGGCGCCTA 60.608 50.000 33.07 15.54 45.35 3.93
141 142 1.462731 TTGAACATGCAAAGGCGCCT 61.463 50.000 27.08 27.08 45.35 5.52
142 143 0.599728 TTTGAACATGCAAAGGCGCC 60.600 50.000 21.89 21.89 45.35 6.53
143 144 1.216122 TTTTGAACATGCAAAGGCGC 58.784 45.000 0.00 0.00 45.35 6.53
164 165 2.431782 ACTGCAACTGACCATGCTTTTT 59.568 40.909 0.00 0.00 42.97 1.94
167 168 1.242076 GACTGCAACTGACCATGCTT 58.758 50.000 0.00 0.00 42.97 3.91
200 201 2.546368 GCTCGTTTGTGGTGTGTGAATA 59.454 45.455 0.00 0.00 0.00 1.75
368 392 4.713735 TTCGCATGGCCGCCTCAA 62.714 61.111 11.61 0.00 0.00 3.02
626 688 4.572571 TGGGTTCGGTGTGGGTGC 62.573 66.667 0.00 0.00 0.00 5.01
762 836 0.556380 AGGGAGAAGGAGAGGAGGGA 60.556 60.000 0.00 0.00 0.00 4.20
765 839 1.106944 GCGAGGGAGAAGGAGAGGAG 61.107 65.000 0.00 0.00 0.00 3.69
768 842 0.395036 TCTGCGAGGGAGAAGGAGAG 60.395 60.000 0.00 0.00 0.00 3.20
793 871 2.444706 CCGAGGGAGGATGAGCCA 60.445 66.667 0.00 0.00 40.02 4.75
986 1121 1.293924 CATCATCGAGCAGACCCAAC 58.706 55.000 0.00 0.00 0.00 3.77
987 1122 0.178767 CCATCATCGAGCAGACCCAA 59.821 55.000 0.00 0.00 0.00 4.12
988 1123 1.825341 CCATCATCGAGCAGACCCA 59.175 57.895 0.00 0.00 0.00 4.51
989 1124 1.596477 GCCATCATCGAGCAGACCC 60.596 63.158 0.00 0.00 0.00 4.46
1251 1440 0.179097 CAGGGCTAGAGGAAGCGAAC 60.179 60.000 0.00 0.00 43.74 3.95
1253 1442 2.427245 GCAGGGCTAGAGGAAGCGA 61.427 63.158 0.00 0.00 43.74 4.93
1277 1466 1.905894 ACCAAACCTGCACAACCTTTT 59.094 42.857 0.00 0.00 0.00 2.27
1278 1467 1.567357 ACCAAACCTGCACAACCTTT 58.433 45.000 0.00 0.00 0.00 3.11
1295 1503 2.414840 AATTCGCGCACCACCAAACC 62.415 55.000 8.75 0.00 0.00 3.27
1331 1539 2.192608 GAGCCAGCTTCGGTTGCAAG 62.193 60.000 0.00 0.00 0.00 4.01
1337 1545 0.179018 AAACTTGAGCCAGCTTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
1344 1552 0.746063 TGCACCAAAACTTGAGCCAG 59.254 50.000 0.00 0.00 32.80 4.85
1349 1557 3.243367 GCACATACTGCACCAAAACTTGA 60.243 43.478 0.00 0.00 46.29 3.02
1364 1572 1.459450 ACCCACGAATTGGCACATAC 58.541 50.000 0.00 0.00 45.37 2.39
1373 1581 2.236395 CTCCAAGGACTACCCACGAATT 59.764 50.000 0.00 0.00 37.41 2.17
1383 1591 7.239438 TCTCTTTTCTAACTCTCCAAGGACTA 58.761 38.462 0.00 0.00 0.00 2.59
1387 1595 6.648725 CAGTTCTCTTTTCTAACTCTCCAAGG 59.351 42.308 0.00 0.00 31.21 3.61
1443 1681 1.086696 AATCCTACATGTGCGCACAC 58.913 50.000 42.74 18.69 45.05 3.82
1448 1686 3.119884 TCTGCAAAAATCCTACATGTGCG 60.120 43.478 9.11 0.00 33.24 5.34
1507 1847 7.495934 ACAATTGTCTCTTATTCCGTAATGAGG 59.504 37.037 4.92 0.00 31.32 3.86
1509 1849 9.309516 GTACAATTGTCTCTTATTCCGTAATGA 57.690 33.333 15.85 0.00 0.00 2.57
1516 1867 8.145122 CCTCCTAGTACAATTGTCTCTTATTCC 58.855 40.741 15.85 0.00 0.00 3.01
1533 1918 5.255687 TGTTGTTGTATCGTCCTCCTAGTA 58.744 41.667 0.00 0.00 0.00 1.82
1537 1922 3.070446 TGTTGTTGTTGTATCGTCCTCCT 59.930 43.478 0.00 0.00 0.00 3.69
1542 1927 6.141685 GGATTTGTTGTTGTTGTTGTATCGTC 59.858 38.462 0.00 0.00 0.00 4.20
1543 1928 5.974751 GGATTTGTTGTTGTTGTTGTATCGT 59.025 36.000 0.00 0.00 0.00 3.73
1544 1929 6.205784 AGGATTTGTTGTTGTTGTTGTATCG 58.794 36.000 0.00 0.00 0.00 2.92
1601 1986 1.787155 CGCGAGATCTTATGGGTTTCG 59.213 52.381 0.00 0.00 0.00 3.46
1684 2072 9.341178 ACCTGAAGGATTGGAGTATCACCAAAA 62.341 40.741 2.62 0.00 43.17 2.44
1736 2124 4.966805 AGAGGTTGGGGTAGATCGAATTTA 59.033 41.667 0.00 0.00 0.00 1.40
1744 2132 1.840635 GCAAGAGAGGTTGGGGTAGAT 59.159 52.381 0.00 0.00 0.00 1.98
1764 2152 1.153449 TAAGGCGTGCGGAGAATGG 60.153 57.895 0.00 0.00 0.00 3.16
1789 2177 0.907486 AGAAGCTCCAGTGCATAGCA 59.093 50.000 13.50 0.00 38.75 3.49
1859 2267 4.706962 GGGTAGCACCAATTTTGAGAGAAT 59.293 41.667 7.49 0.00 41.02 2.40
1886 2296 8.027189 CCGGAATGACAATATACGAGATAAGAA 58.973 37.037 0.00 0.00 0.00 2.52
1889 2299 7.176165 AGTCCGGAATGACAATATACGAGATAA 59.824 37.037 5.23 0.00 37.73 1.75
1902 2312 0.744874 GGATCGAGTCCGGAATGACA 59.255 55.000 10.26 0.00 37.23 3.58
1903 2313 3.571741 GGATCGAGTCCGGAATGAC 57.428 57.895 10.26 0.00 37.23 3.06
1952 2362 1.447140 GTGTGGCGGAGATGCGTAA 60.447 57.895 0.00 0.00 35.06 3.18
2014 2424 1.742411 CGACCCGCAATGTTCTATGGT 60.742 52.381 0.00 0.00 0.00 3.55
2020 2430 1.500396 GGTTCGACCCGCAATGTTC 59.500 57.895 0.00 0.00 30.04 3.18
2056 2466 3.031013 AGTGCCACAAAAGCTAAAAGGT 58.969 40.909 0.00 0.00 0.00 3.50
2123 2533 4.578516 TGTGAACCATCAAATCAAAGTCGT 59.421 37.500 0.00 0.00 37.30 4.34
2167 2580 0.392336 TTTGGGGTCAATGTTGCAGC 59.608 50.000 0.00 0.00 32.28 5.25
2252 2680 1.218875 TGTGCGGTTTCAGTGCTACG 61.219 55.000 0.00 0.00 0.00 3.51
2257 2685 1.536766 ACATGATGTGCGGTTTCAGTG 59.463 47.619 0.00 0.00 0.00 3.66
2425 2855 9.930158 AGTACAAGGGATATAGAAGGAGATATC 57.070 37.037 0.00 0.00 35.25 1.63
2428 2858 7.456269 CCAAGTACAAGGGATATAGAAGGAGAT 59.544 40.741 0.00 0.00 0.00 2.75
2429 2859 6.782988 CCAAGTACAAGGGATATAGAAGGAGA 59.217 42.308 0.00 0.00 0.00 3.71
2430 2860 6.782988 TCCAAGTACAAGGGATATAGAAGGAG 59.217 42.308 0.00 0.00 0.00 3.69
2431 2861 6.689561 TCCAAGTACAAGGGATATAGAAGGA 58.310 40.000 0.00 0.00 0.00 3.36
2432 2862 6.014156 CCTCCAAGTACAAGGGATATAGAAGG 60.014 46.154 0.00 0.00 0.00 3.46
2433 2863 6.782988 TCCTCCAAGTACAAGGGATATAGAAG 59.217 42.308 0.00 0.00 0.00 2.85
2434 2864 6.553852 GTCCTCCAAGTACAAGGGATATAGAA 59.446 42.308 0.00 0.00 0.00 2.10
2435 2865 6.075984 GTCCTCCAAGTACAAGGGATATAGA 58.924 44.000 0.00 0.00 0.00 1.98
2436 2866 5.047943 CGTCCTCCAAGTACAAGGGATATAG 60.048 48.000 0.00 0.00 0.00 1.31
2437 2867 4.831155 CGTCCTCCAAGTACAAGGGATATA 59.169 45.833 0.00 0.00 0.00 0.86
2438 2868 3.641906 CGTCCTCCAAGTACAAGGGATAT 59.358 47.826 0.00 0.00 0.00 1.63
2439 2869 3.028850 CGTCCTCCAAGTACAAGGGATA 58.971 50.000 0.00 0.00 0.00 2.59
2440 2870 1.831736 CGTCCTCCAAGTACAAGGGAT 59.168 52.381 0.00 0.00 0.00 3.85
2441 2871 1.203087 TCGTCCTCCAAGTACAAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
2442 2872 1.263356 TCGTCCTCCAAGTACAAGGG 58.737 55.000 0.00 0.00 0.00 3.95
2443 2873 4.585162 AGATATCGTCCTCCAAGTACAAGG 59.415 45.833 0.00 0.00 0.00 3.61
2444 2874 5.776173 AGATATCGTCCTCCAAGTACAAG 57.224 43.478 0.00 0.00 0.00 3.16
2445 2875 5.655090 TCAAGATATCGTCCTCCAAGTACAA 59.345 40.000 0.00 0.00 0.00 2.41
2446 2876 5.198207 TCAAGATATCGTCCTCCAAGTACA 58.802 41.667 0.00 0.00 0.00 2.90
2447 2877 5.769484 TCAAGATATCGTCCTCCAAGTAC 57.231 43.478 0.00 0.00 0.00 2.73
2448 2878 6.068670 TCATCAAGATATCGTCCTCCAAGTA 58.931 40.000 0.00 0.00 0.00 2.24
2449 2879 4.895889 TCATCAAGATATCGTCCTCCAAGT 59.104 41.667 0.00 0.00 0.00 3.16
2450 2880 5.459536 TCATCAAGATATCGTCCTCCAAG 57.540 43.478 0.00 0.00 0.00 3.61
2451 2881 5.869649 TTCATCAAGATATCGTCCTCCAA 57.130 39.130 0.00 0.00 0.00 3.53
2452 2882 5.869649 TTTCATCAAGATATCGTCCTCCA 57.130 39.130 0.00 0.00 0.00 3.86
2453 2883 5.467063 GGTTTTCATCAAGATATCGTCCTCC 59.533 44.000 0.00 0.00 0.00 4.30
2454 2884 6.284459 AGGTTTTCATCAAGATATCGTCCTC 58.716 40.000 0.00 0.00 0.00 3.71
2455 2885 6.240549 AGGTTTTCATCAAGATATCGTCCT 57.759 37.500 0.00 0.00 0.00 3.85
2456 2886 6.538742 TCAAGGTTTTCATCAAGATATCGTCC 59.461 38.462 0.00 0.00 0.00 4.79
2457 2887 7.539712 TCAAGGTTTTCATCAAGATATCGTC 57.460 36.000 0.00 0.00 0.00 4.20
2458 2888 8.511604 AATCAAGGTTTTCATCAAGATATCGT 57.488 30.769 0.00 0.00 0.00 3.73
2509 2944 1.442769 ACCACTACAGCTTGCGAATG 58.557 50.000 0.00 0.00 0.00 2.67
2510 2945 3.000727 GTTACCACTACAGCTTGCGAAT 58.999 45.455 0.00 0.00 0.00 3.34
2519 2954 3.576982 TCCAAGACCAGTTACCACTACAG 59.423 47.826 0.00 0.00 0.00 2.74
2534 2969 1.618640 GAAGCGCGTGTCTCCAAGAC 61.619 60.000 8.43 0.08 45.26 3.01
2624 3164 2.665000 CACCATGTCGAGCCCTGT 59.335 61.111 0.00 0.00 0.00 4.00
2668 3213 3.160679 AGGCTCCTTTATTTGTGCTGT 57.839 42.857 0.00 0.00 0.00 4.40
2673 3219 4.536489 AGTCAGGTAGGCTCCTTTATTTGT 59.464 41.667 0.00 0.00 35.37 2.83
2674 3220 5.104259 AGTCAGGTAGGCTCCTTTATTTG 57.896 43.478 0.00 0.00 35.37 2.32
2701 3247 7.611467 TCATGTGTGATCTTAGTATTTGGCTTT 59.389 33.333 0.00 0.00 0.00 3.51
2702 3248 7.112122 TCATGTGTGATCTTAGTATTTGGCTT 58.888 34.615 0.00 0.00 0.00 4.35
2703 3249 6.653020 TCATGTGTGATCTTAGTATTTGGCT 58.347 36.000 0.00 0.00 0.00 4.75
2725 3275 4.620723 TGCCCTCTCTTACCTTCTTATCA 58.379 43.478 0.00 0.00 0.00 2.15
2741 3291 2.012673 CATGCAAGAACTACTGCCCTC 58.987 52.381 0.00 0.00 0.00 4.30
2742 3292 1.952367 GCATGCAAGAACTACTGCCCT 60.952 52.381 14.21 0.00 0.00 5.19
2745 3295 3.565905 AAAGCATGCAAGAACTACTGC 57.434 42.857 21.98 0.00 0.00 4.40
2754 3304 7.918536 ATATCTGATACCTAAAGCATGCAAG 57.081 36.000 21.98 13.64 0.00 4.01
2765 3315 7.016296 TGTGATGGGTCAATATCTGATACCTA 58.984 38.462 0.00 0.00 36.14 3.08
2784 3334 3.221771 TGAACCCACTTTTCCTGTGATG 58.778 45.455 0.00 0.00 37.60 3.07
2787 3337 2.288395 GCATGAACCCACTTTTCCTGTG 60.288 50.000 0.00 0.00 35.39 3.66
2808 3363 7.484959 GGTTACAGAACAAAACAACAAAGAGAG 59.515 37.037 0.00 0.00 37.29 3.20
2838 3396 1.869767 GATGATTTAGCAGCGGGAGTG 59.130 52.381 0.00 0.00 0.00 3.51
2839 3397 1.486310 TGATGATTTAGCAGCGGGAGT 59.514 47.619 0.00 0.00 0.00 3.85
2867 3426 6.673154 TCTGAGTCAAGTGATTGCATATTG 57.327 37.500 0.00 0.00 0.00 1.90
2878 3437 7.547019 ACACACATATACATTCTGAGTCAAGTG 59.453 37.037 0.00 0.00 0.00 3.16
2885 3444 6.699204 GGAGTCACACACATATACATTCTGAG 59.301 42.308 0.00 0.00 0.00 3.35
2918 3477 1.967319 AGGGGTATATTGCGTGCTTG 58.033 50.000 0.00 0.00 0.00 4.01
2944 3505 9.117183 TGATTTCCTGATATGTTCTGAATTCTG 57.883 33.333 7.05 6.50 0.00 3.02
2963 3524 9.331282 AGCTACTTTCACTACATAATGATTTCC 57.669 33.333 0.00 0.00 0.00 3.13
3000 3562 1.281419 TTAAAGATGCTCCGGTCCCA 58.719 50.000 0.00 0.00 0.00 4.37
3003 3565 4.442706 TCTTGATTAAAGATGCTCCGGTC 58.557 43.478 0.00 0.00 40.09 4.79
3079 3644 2.490903 CTGTCAAGCAAAGCCAAGCTAT 59.509 45.455 0.00 0.00 40.90 2.97
3177 3750 8.770828 CACAAAGAAGCAGAAAAATCAAATCAT 58.229 29.630 0.00 0.00 0.00 2.45
3304 3944 1.756430 TGTTACACAGCTTGCCACAA 58.244 45.000 0.00 0.00 0.00 3.33
3366 4020 3.674997 ACTGCAAATCACCATAACGTCT 58.325 40.909 0.00 0.00 0.00 4.18
3367 4021 3.435327 TGACTGCAAATCACCATAACGTC 59.565 43.478 0.00 0.00 0.00 4.34
3625 4292 3.334583 TCCATTCTGTTGCAGGTACTC 57.665 47.619 0.00 0.00 34.60 2.59
3758 4427 4.337264 ACCAAAAAGGGATAAGCAGGAT 57.663 40.909 0.00 0.00 43.89 3.24
3759 4428 3.825908 ACCAAAAAGGGATAAGCAGGA 57.174 42.857 0.00 0.00 43.89 3.86
3793 4462 6.128982 GGCGTTAGAGCTTCGTTAATAATACC 60.129 42.308 0.00 0.00 37.29 2.73
3801 4470 0.889994 TGGGCGTTAGAGCTTCGTTA 59.110 50.000 0.00 0.00 37.29 3.18
3804 4473 1.766143 GCATGGGCGTTAGAGCTTCG 61.766 60.000 0.00 0.00 37.29 3.79
3866 4546 3.563390 GCAACATAAAGAGATGCTCCCTC 59.437 47.826 0.00 0.00 34.29 4.30
4079 4759 2.094675 GCACCAGCTGATATGTTGGTT 58.905 47.619 17.39 0.00 46.88 3.67
4724 5404 0.826715 CTTCCCCGATCTTCTGCAGA 59.173 55.000 13.74 13.74 35.33 4.26
4990 5677 7.553402 AGCAGTATAAGTAGATATACAGACGGG 59.447 40.741 0.00 0.00 39.94 5.28
5108 5813 2.158385 TCTACAACACATTTGGGGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
5321 6095 4.000988 GCACCTTCAGAGTTCGGAAAATA 58.999 43.478 0.00 0.00 30.17 1.40
5388 6306 1.066573 AGAACAGATGAACGCTCCAGG 60.067 52.381 0.00 0.00 0.00 4.45
5462 6387 4.923281 GCAATGTATTGGTCCAACAGAAAC 59.077 41.667 6.41 1.60 38.21 2.78
5552 6508 2.743928 GCCGCACAGAGAACCAGG 60.744 66.667 0.00 0.00 0.00 4.45
5555 6511 2.946762 GTTGCCGCACAGAGAACC 59.053 61.111 0.00 0.00 0.00 3.62
5570 6526 5.639506 CACAAGATACCAAGATGTCTTCGTT 59.360 40.000 0.00 0.00 33.11 3.85
5620 6576 1.372087 GCAGCAATCGTCCAAGGGAG 61.372 60.000 0.00 0.00 29.39 4.30
5664 6620 1.481363 TCTCAGGCTCTCAATCAGCAG 59.519 52.381 0.00 0.00 38.77 4.24
5665 6621 1.206610 GTCTCAGGCTCTCAATCAGCA 59.793 52.381 0.00 0.00 38.77 4.41
5666 6622 1.802136 CGTCTCAGGCTCTCAATCAGC 60.802 57.143 0.00 0.00 36.02 4.26
5678 6634 2.886081 CACTCTTGATTCCGTCTCAGG 58.114 52.381 0.00 0.00 0.00 3.86
5705 6661 0.747283 CCTCAGCAGATGAACTGGCC 60.747 60.000 0.00 0.00 45.82 5.36
5723 6679 2.677848 GAAAGGAGAGGGGTGCCC 59.322 66.667 0.00 0.00 45.90 5.36
5726 6682 1.597461 GGACGAAAGGAGAGGGGTG 59.403 63.158 0.00 0.00 0.00 4.61
5727 6683 1.612739 GGGACGAAAGGAGAGGGGT 60.613 63.158 0.00 0.00 0.00 4.95
5830 6790 7.103641 ACAGTTTAAGAGTCTTCACACTTGAA 58.896 34.615 9.12 0.00 39.55 2.69
5851 6818 0.318441 CCCTCGTGATGTGTGACAGT 59.682 55.000 0.00 0.00 0.00 3.55
5869 6836 2.576615 CCGATTTTCCTCCCTGAATCC 58.423 52.381 0.00 0.00 0.00 3.01
5884 6851 0.822164 CGACTACCTGAACCCCGATT 59.178 55.000 0.00 0.00 0.00 3.34
5907 6874 1.067212 CTCGGCAGCGGTATAAAGTCT 59.933 52.381 0.00 0.00 0.00 3.24
5924 6891 2.584608 CAGCCCCTACCCAACTCG 59.415 66.667 0.00 0.00 0.00 4.18
5930 6897 1.073242 TATTCCCCAGCCCCTACCC 60.073 63.158 0.00 0.00 0.00 3.69
5945 6912 4.293494 TCAGAGCTTCAGATCCACCTATT 58.707 43.478 0.00 0.00 0.00 1.73
5946 6913 3.921104 TCAGAGCTTCAGATCCACCTAT 58.079 45.455 0.00 0.00 0.00 2.57
5947 6914 3.388552 TCAGAGCTTCAGATCCACCTA 57.611 47.619 0.00 0.00 0.00 3.08
5948 6915 2.235898 GTTCAGAGCTTCAGATCCACCT 59.764 50.000 0.00 0.00 0.00 4.00
5949 6916 2.626840 GTTCAGAGCTTCAGATCCACC 58.373 52.381 0.00 0.00 0.00 4.61
5950 6917 2.027745 TGGTTCAGAGCTTCAGATCCAC 60.028 50.000 8.76 0.00 30.10 4.02
5951 6918 2.259917 TGGTTCAGAGCTTCAGATCCA 58.740 47.619 8.76 8.76 31.85 3.41
5952 6919 3.340814 TTGGTTCAGAGCTTCAGATCC 57.659 47.619 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.