Multiple sequence alignment - TraesCS1D01G165400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G165400 chr1D 100.000 3740 0 0 1 3740 236436183 236439922 0.000000e+00 6907.0
1 TraesCS1D01G165400 chr1B 96.982 1789 44 8 1333 3115 341930126 341931910 0.000000e+00 2996.0
2 TraesCS1D01G165400 chr1B 95.574 610 20 5 735 1338 341929444 341930052 0.000000e+00 970.0
3 TraesCS1D01G165400 chr1B 88.169 355 35 3 3336 3684 341932126 341932479 2.080000e-112 416.0
4 TraesCS1D01G165400 chr1B 96.396 111 4 0 3576 3686 341932480 341932590 2.290000e-42 183.0
5 TraesCS1D01G165400 chr1B 92.982 57 4 0 630 686 341927772 341927828 2.390000e-12 84.2
6 TraesCS1D01G165400 chr1A 94.777 1704 57 11 1333 3020 309403045 309401358 0.000000e+00 2625.0
7 TraesCS1D01G165400 chr1A 93.760 657 13 7 689 1333 309403755 309403115 0.000000e+00 961.0
8 TraesCS1D01G165400 chr1A 92.453 53 2 1 3083 3133 309401237 309401185 1.440000e-09 75.0
9 TraesCS1D01G165400 chr1A 94.872 39 2 0 3083 3121 309401289 309401251 1.120000e-05 62.1
10 TraesCS1D01G165400 chr6D 93.365 633 37 3 1 628 53788446 53787814 0.000000e+00 931.0
11 TraesCS1D01G165400 chr2D 93.038 632 38 4 1 627 415263202 415263832 0.000000e+00 918.0
12 TraesCS1D01G165400 chr2D 91.640 634 47 2 1 628 651541673 651541040 0.000000e+00 872.0
13 TraesCS1D01G165400 chr5D 92.563 632 42 3 1 627 376384890 376385521 0.000000e+00 902.0
14 TraesCS1D01G165400 chr5D 91.311 633 49 2 1 627 101234933 101234301 0.000000e+00 859.0
15 TraesCS1D01G165400 chr5D 90.679 633 53 2 1 627 101203685 101203053 0.000000e+00 837.0
16 TraesCS1D01G165400 chr4D 92.528 629 44 3 1 627 211536373 211537000 0.000000e+00 898.0
17 TraesCS1D01G165400 chr7D 91.406 640 45 6 1 630 514845711 514846350 0.000000e+00 869.0
18 TraesCS1D01G165400 chr7B 90.723 636 49 7 1 627 652421682 652422316 0.000000e+00 839.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G165400 chr1D 236436183 236439922 3739 False 6907.000 6907 100.0000 1 3740 1 chr1D.!!$F1 3739
1 TraesCS1D01G165400 chr1B 341927772 341932590 4818 False 929.840 2996 94.0206 630 3686 5 chr1B.!!$F1 3056
2 TraesCS1D01G165400 chr1A 309401185 309403755 2570 True 930.775 2625 93.9655 689 3133 4 chr1A.!!$R1 2444
3 TraesCS1D01G165400 chr6D 53787814 53788446 632 True 931.000 931 93.3650 1 628 1 chr6D.!!$R1 627
4 TraesCS1D01G165400 chr2D 415263202 415263832 630 False 918.000 918 93.0380 1 627 1 chr2D.!!$F1 626
5 TraesCS1D01G165400 chr2D 651541040 651541673 633 True 872.000 872 91.6400 1 628 1 chr2D.!!$R1 627
6 TraesCS1D01G165400 chr5D 376384890 376385521 631 False 902.000 902 92.5630 1 627 1 chr5D.!!$F1 626
7 TraesCS1D01G165400 chr5D 101234301 101234933 632 True 859.000 859 91.3110 1 627 1 chr5D.!!$R2 626
8 TraesCS1D01G165400 chr5D 101203053 101203685 632 True 837.000 837 90.6790 1 627 1 chr5D.!!$R1 626
9 TraesCS1D01G165400 chr4D 211536373 211537000 627 False 898.000 898 92.5280 1 627 1 chr4D.!!$F1 626
10 TraesCS1D01G165400 chr7D 514845711 514846350 639 False 869.000 869 91.4060 1 630 1 chr7D.!!$F1 629
11 TraesCS1D01G165400 chr7B 652421682 652422316 634 False 839.000 839 90.7230 1 627 1 chr7B.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 63 0.531532 GGACAGCTGACGCATAGCAT 60.532 55.0 23.35 0.0 43.53 3.79 F
858 2468 0.689412 CTCTCCTCTCCACCCCTTCC 60.689 65.0 0.00 0.0 0.00 3.46 F
1266 2882 1.140772 ACCCCAAGAAACCCCTCCTC 61.141 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1260 2876 0.178998 CCTTGATGGCCATGAGGAGG 60.179 60.0 29.15 20.09 36.89 4.30 R
1995 3697 3.341823 CAGGCATAGCATCATCCCTTAC 58.658 50.0 0.00 0.00 0.00 2.34 R
3168 4919 0.107081 TGGAAACGTGACGGGACATT 59.893 50.0 10.66 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 4.141482 GGGTAGATATTTTGGGACAGCTGA 60.141 45.833 23.35 0.00 42.39 4.26
61 63 0.531532 GGACAGCTGACGCATAGCAT 60.532 55.000 23.35 0.00 43.53 3.79
153 155 2.093447 ACTGGCGAATTCCTAACTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
168 170 6.712547 CCTAACTCCTGAGTCAGAACAAATTT 59.287 38.462 22.09 6.95 41.58 1.82
198 200 3.385111 ACCAGAAGAACTTCGTCTCTGTT 59.615 43.478 4.42 0.00 43.97 3.16
248 251 2.559698 TCCAATGGCTTCACTCGAAA 57.440 45.000 0.00 0.00 0.00 3.46
276 279 6.938698 TGGTAGGTGTAGGATTTTGAGTTA 57.061 37.500 0.00 0.00 0.00 2.24
283 286 6.599638 GGTGTAGGATTTTGAGTTAAGCATCT 59.400 38.462 0.00 0.00 0.00 2.90
284 287 7.769044 GGTGTAGGATTTTGAGTTAAGCATCTA 59.231 37.037 0.00 0.00 0.00 1.98
338 341 4.128643 CCCTTTAACAGTACGGTGTTTCA 58.871 43.478 5.88 0.00 41.06 2.69
449 460 8.335532 TCTTCACTTTCAAAGTCTTCAGAAAA 57.664 30.769 0.00 0.00 40.46 2.29
498 509 7.230712 AGTCGAAGAACTTCATTTTTATGGGTT 59.769 33.333 13.72 0.00 39.69 4.11
542 553 7.506261 TCAAACTCCTCATAGACTTATAGACCC 59.494 40.741 0.00 0.00 0.00 4.46
575 586 8.380099 ACTCATAAACACATTAGTCCCTTAACA 58.620 33.333 0.00 0.00 0.00 2.41
610 621 6.957020 TCAATACACCAAAATCATTAAGGGGT 59.043 34.615 1.82 1.82 39.73 4.95
618 629 9.232882 ACCAAAATCATTAAGGGGTACTAGATA 57.767 33.333 0.00 0.00 0.00 1.98
628 639 5.139001 AGGGGTACTAGATACACTTACAGC 58.861 45.833 0.00 0.00 37.36 4.40
629 640 4.891756 GGGGTACTAGATACACTTACAGCA 59.108 45.833 0.00 0.00 37.36 4.41
630 641 5.009811 GGGGTACTAGATACACTTACAGCAG 59.990 48.000 0.00 0.00 37.36 4.24
631 642 5.507650 GGGTACTAGATACACTTACAGCAGC 60.508 48.000 0.00 0.00 33.97 5.25
632 643 4.657436 ACTAGATACACTTACAGCAGCC 57.343 45.455 0.00 0.00 0.00 4.85
633 644 4.282496 ACTAGATACACTTACAGCAGCCT 58.718 43.478 0.00 0.00 0.00 4.58
634 645 3.533606 AGATACACTTACAGCAGCCTG 57.466 47.619 0.00 0.00 44.80 4.85
642 653 4.877823 CACTTACAGCAGCCTGAAATGATA 59.122 41.667 0.00 0.00 41.77 2.15
686 697 9.305555 AGCAATCAATACTATGCATAAAAGGAT 57.694 29.630 8.00 0.00 41.18 3.24
687 698 9.918630 GCAATCAATACTATGCATAAAAGGATT 57.081 29.630 8.00 3.74 38.63 3.01
827 2437 4.281688 CACCCAAACCAGAAATTCTCACAT 59.718 41.667 0.00 0.00 0.00 3.21
847 2457 2.286523 CGCACCCAACCTCTCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
854 2464 1.081277 AACCTCTCCTCTCCACCCC 59.919 63.158 0.00 0.00 0.00 4.95
858 2468 0.689412 CTCTCCTCTCCACCCCTTCC 60.689 65.000 0.00 0.00 0.00 3.46
989 2601 1.587043 CTCGTCGGAAGAGGTGAGCA 61.587 60.000 12.40 0.00 45.61 4.26
1128 2744 1.214589 CGTCGTGTCGGGGATCTTT 59.785 57.895 0.00 0.00 0.00 2.52
1260 2876 1.303074 GTCCGACCCCAAGAAACCC 60.303 63.158 0.00 0.00 0.00 4.11
1266 2882 1.140772 ACCCCAAGAAACCCCTCCTC 61.141 60.000 0.00 0.00 0.00 3.71
1422 3119 6.869421 ATTTGTATGAACTAATTGCGCAAC 57.131 33.333 27.64 12.29 28.34 4.17
1466 3163 3.247006 TCGAGTAGGATCAAAACAGGC 57.753 47.619 0.00 0.00 0.00 4.85
1570 3267 5.124936 GGGTACTTTTCACTTGAACAACTGT 59.875 40.000 0.00 0.00 33.13 3.55
1653 3350 8.887717 GGTTAGGCTCAATAATGCTATAAGATG 58.112 37.037 0.00 0.00 0.00 2.90
2069 3776 5.016173 AGCTCACCTGCAACCAAATTTATA 58.984 37.500 0.00 0.00 34.99 0.98
2097 3804 6.327934 CAGCTTCTTAATTCATGTTCCAAGG 58.672 40.000 0.00 0.00 0.00 3.61
2322 4030 8.354711 TGTGTCAAGTCTCTCATATACTTCTT 57.645 34.615 0.00 0.00 31.21 2.52
2652 4360 1.985116 AGAGACCGAGAAGGCACCC 60.985 63.158 0.00 0.00 46.52 4.61
2718 4426 2.032681 AAGGAAGCCACAGCCGAC 59.967 61.111 0.00 0.00 41.25 4.79
2980 4688 2.499289 AGTATCTCTGGCCTGTGTCTTG 59.501 50.000 3.32 0.00 0.00 3.02
2981 4689 0.035630 ATCTCTGGCCTGTGTCTTGC 60.036 55.000 3.32 0.00 0.00 4.01
2990 4708 3.255642 GGCCTGTGTCTTGCATTTTCTTA 59.744 43.478 0.00 0.00 0.00 2.10
3086 4837 3.364366 CCGTGAAGAATGAACAACAGAGC 60.364 47.826 0.00 0.00 0.00 4.09
3121 4872 5.887598 AGATGCAAATTATCTAAGTGTGCCA 59.112 36.000 0.00 0.00 33.30 4.92
3122 4873 5.565592 TGCAAATTATCTAAGTGTGCCAG 57.434 39.130 0.00 0.00 0.00 4.85
3125 4876 5.123820 GCAAATTATCTAAGTGTGCCAGACA 59.876 40.000 0.00 0.00 0.00 3.41
3126 4877 6.349280 GCAAATTATCTAAGTGTGCCAGACAA 60.349 38.462 0.00 0.00 35.91 3.18
3127 4878 7.629222 GCAAATTATCTAAGTGTGCCAGACAAT 60.629 37.037 0.00 0.00 35.91 2.71
3128 4879 6.932356 ATTATCTAAGTGTGCCAGACAATG 57.068 37.500 0.00 0.00 35.91 2.82
3132 4883 5.419542 TCTAAGTGTGCCAGACAATGATAC 58.580 41.667 0.00 0.00 35.91 2.24
3133 4884 2.621338 AGTGTGCCAGACAATGATACG 58.379 47.619 0.00 0.00 35.91 3.06
3134 4885 1.665679 GTGTGCCAGACAATGATACGG 59.334 52.381 0.00 0.00 35.91 4.02
3138 4889 1.871080 CCAGACAATGATACGGGAGC 58.129 55.000 0.00 0.00 0.00 4.70
3150 4901 3.379650 CGGGAGCCGTTCATATGTT 57.620 52.632 1.90 0.00 42.73 2.71
3151 4902 1.217882 CGGGAGCCGTTCATATGTTC 58.782 55.000 1.90 0.00 42.73 3.18
3152 4903 1.472552 CGGGAGCCGTTCATATGTTCA 60.473 52.381 1.90 0.00 42.73 3.18
3153 4904 2.806745 CGGGAGCCGTTCATATGTTCAT 60.807 50.000 1.90 0.00 42.73 2.57
3158 4909 4.269183 AGCCGTTCATATGTTCATCCAAA 58.731 39.130 1.90 0.00 0.00 3.28
3159 4910 4.336433 AGCCGTTCATATGTTCATCCAAAG 59.664 41.667 1.90 0.00 0.00 2.77
3160 4911 4.601019 CCGTTCATATGTTCATCCAAAGC 58.399 43.478 1.90 0.00 0.00 3.51
3161 4912 4.096231 CCGTTCATATGTTCATCCAAAGCA 59.904 41.667 1.90 0.00 0.00 3.91
3162 4913 5.268544 CGTTCATATGTTCATCCAAAGCAG 58.731 41.667 1.90 0.00 0.00 4.24
3163 4914 4.906065 TCATATGTTCATCCAAAGCAGC 57.094 40.909 1.90 0.00 0.00 5.25
3164 4915 4.529897 TCATATGTTCATCCAAAGCAGCT 58.470 39.130 1.90 0.00 0.00 4.24
3165 4916 4.951715 TCATATGTTCATCCAAAGCAGCTT 59.048 37.500 0.21 0.21 0.00 3.74
3168 4919 5.726980 ATGTTCATCCAAAGCAGCTTTAA 57.273 34.783 20.20 11.80 31.96 1.52
3169 4920 5.528043 TGTTCATCCAAAGCAGCTTTAAA 57.472 34.783 20.20 11.45 31.96 1.52
3171 4922 5.927689 TGTTCATCCAAAGCAGCTTTAAATG 59.072 36.000 20.20 22.39 31.96 2.32
3172 4923 5.726980 TCATCCAAAGCAGCTTTAAATGT 57.273 34.783 26.11 10.90 31.96 2.71
3174 4925 4.519540 TCCAAAGCAGCTTTAAATGTCC 57.480 40.909 20.20 0.00 31.96 4.02
3175 4926 3.258123 TCCAAAGCAGCTTTAAATGTCCC 59.742 43.478 20.20 0.00 31.96 4.46
3183 4934 2.224784 GCTTTAAATGTCCCGTCACGTT 59.775 45.455 0.00 0.00 0.00 3.99
3185 4936 4.460505 CTTTAAATGTCCCGTCACGTTTC 58.539 43.478 0.00 0.00 36.91 2.78
3187 4938 0.107081 AATGTCCCGTCACGTTTCCA 59.893 50.000 0.00 0.00 0.00 3.53
3189 4940 0.107081 TGTCCCGTCACGTTTCCAAT 59.893 50.000 0.00 0.00 0.00 3.16
3190 4941 0.515564 GTCCCGTCACGTTTCCAATG 59.484 55.000 0.00 0.00 0.00 2.82
3191 4942 0.604243 TCCCGTCACGTTTCCAATGG 60.604 55.000 0.00 0.00 0.00 3.16
3192 4943 0.604243 CCCGTCACGTTTCCAATGGA 60.604 55.000 0.00 0.00 0.00 3.41
3193 4944 1.231221 CCGTCACGTTTCCAATGGAA 58.769 50.000 11.23 11.23 40.27 3.53
3194 4945 1.810151 CCGTCACGTTTCCAATGGAAT 59.190 47.619 16.30 0.00 41.71 3.01
3196 4947 3.305064 CCGTCACGTTTCCAATGGAATTT 60.305 43.478 16.30 0.07 41.71 1.82
3197 4948 4.083217 CCGTCACGTTTCCAATGGAATTTA 60.083 41.667 16.30 0.00 41.71 1.40
3198 4949 5.453648 CGTCACGTTTCCAATGGAATTTAA 58.546 37.500 16.30 0.00 41.71 1.52
3199 4950 5.567534 CGTCACGTTTCCAATGGAATTTAAG 59.432 40.000 16.30 6.09 41.71 1.85
3200 4951 5.861787 GTCACGTTTCCAATGGAATTTAAGG 59.138 40.000 16.30 8.86 41.71 2.69
3201 4952 5.536916 TCACGTTTCCAATGGAATTTAAGGT 59.463 36.000 16.30 9.49 41.71 3.50
3202 4953 5.633182 CACGTTTCCAATGGAATTTAAGGTG 59.367 40.000 16.30 16.97 41.71 4.00
3203 4954 5.167845 CGTTTCCAATGGAATTTAAGGTGG 58.832 41.667 16.30 0.00 41.71 4.61
3204 4955 4.817318 TTCCAATGGAATTTAAGGTGGC 57.183 40.909 11.23 0.00 36.71 5.01
3205 4956 2.757868 TCCAATGGAATTTAAGGTGGCG 59.242 45.455 0.00 0.00 31.22 5.69
3206 4957 2.159114 CCAATGGAATTTAAGGTGGCGG 60.159 50.000 0.00 0.00 31.22 6.13
3248 5041 1.067213 GTCTTGCTCAGAGACCACTCC 60.067 57.143 0.00 0.00 43.53 3.85
3252 5045 1.806568 CTCAGAGACCACTCCTCGC 59.193 63.158 0.00 0.00 43.53 5.03
3280 5073 0.177604 AGCATCTCCTTGCCGAGAAG 59.822 55.000 0.01 0.00 43.83 2.85
3282 5075 0.539051 CATCTCCTTGCCGAGAAGGT 59.461 55.000 11.02 0.00 42.08 3.50
3293 5086 1.402984 CCGAGAAGGTGGATATAGCGC 60.403 57.143 0.00 0.00 34.51 5.92
3294 5087 1.542030 CGAGAAGGTGGATATAGCGCT 59.458 52.381 17.26 17.26 0.00 5.92
3295 5088 2.029828 CGAGAAGGTGGATATAGCGCTT 60.030 50.000 18.68 6.25 0.00 4.68
3296 5089 3.190744 CGAGAAGGTGGATATAGCGCTTA 59.809 47.826 18.68 8.60 0.00 3.09
3297 5090 4.487019 GAGAAGGTGGATATAGCGCTTAC 58.513 47.826 18.68 0.00 0.00 2.34
3298 5091 4.153411 AGAAGGTGGATATAGCGCTTACT 58.847 43.478 18.68 3.25 0.00 2.24
3299 5092 4.218852 AGAAGGTGGATATAGCGCTTACTC 59.781 45.833 18.68 9.83 0.00 2.59
3300 5093 2.488545 AGGTGGATATAGCGCTTACTCG 59.511 50.000 18.68 0.00 0.00 4.18
3301 5094 2.228343 GGTGGATATAGCGCTTACTCGT 59.772 50.000 18.68 0.00 0.00 4.18
3302 5095 3.490399 GTGGATATAGCGCTTACTCGTC 58.510 50.000 18.68 5.81 0.00 4.20
3303 5096 3.188873 GTGGATATAGCGCTTACTCGTCT 59.811 47.826 18.68 0.00 0.00 4.18
3304 5097 3.436015 TGGATATAGCGCTTACTCGTCTC 59.564 47.826 18.68 1.55 0.00 3.36
3305 5098 3.181508 GGATATAGCGCTTACTCGTCTCC 60.182 52.174 18.68 7.42 0.00 3.71
3306 5099 0.587285 ATAGCGCTTACTCGTCTCCG 59.413 55.000 18.68 0.00 0.00 4.63
3307 5100 0.742281 TAGCGCTTACTCGTCTCCGT 60.742 55.000 18.68 0.00 35.01 4.69
3308 5101 1.583194 GCGCTTACTCGTCTCCGTC 60.583 63.158 0.00 0.00 35.01 4.79
3309 5102 1.792301 CGCTTACTCGTCTCCGTCA 59.208 57.895 0.00 0.00 35.01 4.35
3310 5103 0.377554 CGCTTACTCGTCTCCGTCAT 59.622 55.000 0.00 0.00 35.01 3.06
3311 5104 1.202154 CGCTTACTCGTCTCCGTCATT 60.202 52.381 0.00 0.00 35.01 2.57
3312 5105 2.186076 GCTTACTCGTCTCCGTCATTG 58.814 52.381 0.00 0.00 35.01 2.82
3313 5106 2.415625 GCTTACTCGTCTCCGTCATTGT 60.416 50.000 0.00 0.00 35.01 2.71
3314 5107 3.427243 CTTACTCGTCTCCGTCATTGTC 58.573 50.000 0.00 0.00 35.01 3.18
3315 5108 1.535833 ACTCGTCTCCGTCATTGTCT 58.464 50.000 0.00 0.00 35.01 3.41
3316 5109 1.887198 ACTCGTCTCCGTCATTGTCTT 59.113 47.619 0.00 0.00 35.01 3.01
3317 5110 2.095161 ACTCGTCTCCGTCATTGTCTTC 60.095 50.000 0.00 0.00 35.01 2.87
3318 5111 1.135774 TCGTCTCCGTCATTGTCTTCG 60.136 52.381 0.00 0.00 35.01 3.79
3319 5112 1.135774 CGTCTCCGTCATTGTCTTCGA 60.136 52.381 0.00 0.00 0.00 3.71
3320 5113 2.251893 GTCTCCGTCATTGTCTTCGAC 58.748 52.381 0.00 0.00 0.00 4.20
3321 5114 1.201647 TCTCCGTCATTGTCTTCGACC 59.798 52.381 0.00 0.00 0.00 4.79
3322 5115 0.109458 TCCGTCATTGTCTTCGACCG 60.109 55.000 0.00 0.00 0.00 4.79
3323 5116 1.076533 CCGTCATTGTCTTCGACCGG 61.077 60.000 0.00 0.00 0.00 5.28
3324 5117 0.388134 CGTCATTGTCTTCGACCGGT 60.388 55.000 6.92 6.92 0.00 5.28
3325 5118 1.068474 GTCATTGTCTTCGACCGGTG 58.932 55.000 14.63 4.45 0.00 4.94
3326 5119 0.677288 TCATTGTCTTCGACCGGTGT 59.323 50.000 14.63 0.00 0.00 4.16
3327 5120 0.790207 CATTGTCTTCGACCGGTGTG 59.210 55.000 14.63 3.94 0.00 3.82
3328 5121 0.677288 ATTGTCTTCGACCGGTGTGA 59.323 50.000 14.63 7.00 0.00 3.58
3329 5122 0.031585 TTGTCTTCGACCGGTGTGAG 59.968 55.000 14.63 6.59 0.00 3.51
3330 5123 1.105167 TGTCTTCGACCGGTGTGAGT 61.105 55.000 14.63 0.00 0.00 3.41
3331 5124 0.031721 GTCTTCGACCGGTGTGAGTT 59.968 55.000 14.63 0.00 0.00 3.01
3332 5125 0.313043 TCTTCGACCGGTGTGAGTTC 59.687 55.000 14.63 0.00 0.00 3.01
3333 5126 0.666577 CTTCGACCGGTGTGAGTTCC 60.667 60.000 14.63 0.00 0.00 3.62
3334 5127 2.410638 TTCGACCGGTGTGAGTTCCG 62.411 60.000 14.63 6.80 45.42 4.30
3376 5169 1.448922 CGAGACATCGGAGTCCCTCC 61.449 65.000 2.80 0.00 46.44 4.30
3384 5177 1.678300 GGAGTCCCTCCGAGTTCGT 60.678 63.158 0.00 0.00 41.08 3.85
3400 5193 0.317160 TCGTACTCACCTGTGCCTTG 59.683 55.000 0.00 0.00 0.00 3.61
3407 5200 0.617413 CACCTGTGCCTTGAGAGGAT 59.383 55.000 0.00 0.00 46.74 3.24
3416 5209 2.675348 GCCTTGAGAGGATGAACTTTCG 59.325 50.000 0.00 0.00 46.74 3.46
3420 5213 0.741221 AGAGGATGAACTTTCGCCGC 60.741 55.000 0.00 0.00 31.81 6.53
3422 5215 2.399611 GATGAACTTTCGCCGCCG 59.600 61.111 0.00 0.00 0.00 6.46
3426 5219 2.280592 AACTTTCGCCGCCGAGTT 60.281 55.556 0.00 0.00 45.35 3.01
3428 5221 1.012486 AACTTTCGCCGCCGAGTTAG 61.012 55.000 0.00 0.00 45.35 2.34
3438 5231 0.824759 GCCGAGTTAGTGGAGGATGT 59.175 55.000 0.00 0.00 0.00 3.06
3476 5269 3.365265 GTTGCGTGCAAGGGGAGG 61.365 66.667 7.66 0.00 36.52 4.30
3477 5270 4.659172 TTGCGTGCAAGGGGAGGG 62.659 66.667 2.58 0.00 0.00 4.30
3495 5288 3.334054 GGGAGAGGGCAGCACCTT 61.334 66.667 4.12 0.00 42.10 3.50
3500 5293 2.281761 AGGGCAGCACCTTCAACG 60.282 61.111 0.00 0.00 37.69 4.10
3509 5302 3.195698 CCTTCAACGCGGCTAGGC 61.196 66.667 12.47 6.15 0.00 3.93
3541 5340 2.125912 CTCCTCCTTCACGTGGCG 60.126 66.667 17.00 6.87 0.00 5.69
3560 5359 2.641439 GATGGCGACTCCTGCTCCTG 62.641 65.000 0.00 0.00 35.26 3.86
3568 5367 3.123620 CCTGCTCCTGCTTCACGC 61.124 66.667 0.00 0.00 40.48 5.34
3626 5534 4.890306 GGGAGGAGAGGAGGCCCC 62.890 77.778 0.00 0.00 32.50 5.80
3657 5565 2.282391 AGCGTGGAGGCAAATGCA 60.282 55.556 7.80 0.00 44.36 3.96
3665 5573 2.681064 GGCAAATGCAGCTCCCCA 60.681 61.111 7.80 0.00 44.36 4.96
3690 5598 3.804193 GGCGGAAAAGCGGCTCTG 61.804 66.667 1.45 0.00 42.03 3.35
3691 5599 2.742372 GCGGAAAAGCGGCTCTGA 60.742 61.111 1.45 0.00 39.51 3.27
3692 5600 2.109126 GCGGAAAAGCGGCTCTGAT 61.109 57.895 1.45 0.00 39.51 2.90
3693 5601 1.717937 CGGAAAAGCGGCTCTGATG 59.282 57.895 1.45 0.00 0.00 3.07
3694 5602 1.709147 CGGAAAAGCGGCTCTGATGG 61.709 60.000 1.45 0.00 0.00 3.51
3695 5603 1.431036 GAAAAGCGGCTCTGATGGC 59.569 57.895 1.45 0.00 0.00 4.40
3720 5628 3.787394 GACCGTGGTCTTGGAGGA 58.213 61.111 11.81 0.00 41.57 3.71
3721 5629 1.592223 GACCGTGGTCTTGGAGGAG 59.408 63.158 11.81 0.00 41.57 3.69
3722 5630 2.266055 CCGTGGTCTTGGAGGAGC 59.734 66.667 0.00 0.00 0.00 4.70
3723 5631 2.583441 CCGTGGTCTTGGAGGAGCA 61.583 63.158 0.00 0.00 40.71 4.26
3724 5632 1.371183 CGTGGTCTTGGAGGAGCAA 59.629 57.895 0.00 0.00 43.77 3.91
3725 5633 0.671781 CGTGGTCTTGGAGGAGCAAG 60.672 60.000 0.00 0.00 43.77 4.01
3726 5634 0.957888 GTGGTCTTGGAGGAGCAAGC 60.958 60.000 0.00 0.00 43.77 4.01
3727 5635 1.376466 GGTCTTGGAGGAGCAAGCA 59.624 57.895 0.00 0.00 34.32 3.91
3728 5636 0.957888 GGTCTTGGAGGAGCAAGCAC 60.958 60.000 0.00 0.00 34.32 4.40
3729 5637 0.957888 GTCTTGGAGGAGCAAGCACC 60.958 60.000 0.00 0.00 0.00 5.01
3730 5638 2.032528 TTGGAGGAGCAAGCACCG 59.967 61.111 2.89 0.00 0.00 4.94
3731 5639 2.454832 CTTGGAGGAGCAAGCACCGA 62.455 60.000 2.89 0.00 0.00 4.69
3732 5640 2.050836 TTGGAGGAGCAAGCACCGAA 62.051 55.000 2.89 0.00 0.00 4.30
3733 5641 1.743252 GGAGGAGCAAGCACCGAAG 60.743 63.158 2.89 0.00 0.00 3.79
3734 5642 2.359230 AGGAGCAAGCACCGAAGC 60.359 61.111 2.89 0.00 0.00 3.86
3735 5643 2.669569 GGAGCAAGCACCGAAGCA 60.670 61.111 2.02 0.00 36.85 3.91
3736 5644 2.042831 GGAGCAAGCACCGAAGCAT 61.043 57.895 2.02 0.00 36.85 3.79
3737 5645 1.427020 GAGCAAGCACCGAAGCATC 59.573 57.895 2.02 0.00 36.85 3.91
3738 5646 1.300971 GAGCAAGCACCGAAGCATCA 61.301 55.000 2.02 0.00 36.85 3.07
3739 5647 0.890542 AGCAAGCACCGAAGCATCAA 60.891 50.000 2.02 0.00 36.85 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.154656 CACCTAACGATCATATCATTGAAGGA 58.845 38.462 6.89 0.00 0.00 3.36
51 53 1.931172 GACCGTTGTTATGCTATGCGT 59.069 47.619 0.00 0.00 0.00 5.24
61 63 5.738118 ACTCAAATTTTCGACCGTTGTTA 57.262 34.783 0.00 0.00 0.00 2.41
153 155 6.147000 GGTCTCTGAGAAATTTGTTCTGACTC 59.853 42.308 9.31 0.00 0.00 3.36
168 170 3.504134 CGAAGTTCTTCTGGTCTCTGAGA 59.496 47.826 2.58 2.58 0.00 3.27
198 200 9.408648 TCATACAGTTCAGTCATATCTTCAGTA 57.591 33.333 0.00 0.00 0.00 2.74
248 251 5.491078 TCAAAATCCTACACCTACCAATCCT 59.509 40.000 0.00 0.00 0.00 3.24
308 311 2.019807 ACTGTTAAAGGGGGTCGAGA 57.980 50.000 0.00 0.00 0.00 4.04
449 460 7.230027 ACTGAAGACTTTGGATTTCTGAAGAT 58.770 34.615 0.00 0.00 0.00 2.40
493 504 7.685481 TGATATTTACAGAGAAAGTCAACCCA 58.315 34.615 0.00 0.00 0.00 4.51
498 509 9.436957 GGAGTTTGATATTTACAGAGAAAGTCA 57.563 33.333 0.00 0.00 0.00 3.41
542 553 7.201410 GGACTAATGTGTTTATGAGTGTACACG 60.201 40.741 19.93 2.92 42.81 4.49
583 594 8.485392 CCCCTTAATGATTTTGGTGTATTGAAT 58.515 33.333 0.00 0.00 0.00 2.57
602 613 7.286316 GCTGTAAGTGTATCTAGTACCCCTTAA 59.714 40.741 0.00 0.00 32.31 1.85
610 621 5.299531 CAGGCTGCTGTAAGTGTATCTAGTA 59.700 44.000 0.00 0.00 35.30 1.82
618 629 2.638480 TTTCAGGCTGCTGTAAGTGT 57.362 45.000 10.34 0.00 35.30 3.55
628 639 6.264744 ACTGATTGGATTATCATTTCAGGCTG 59.735 38.462 8.58 8.58 34.24 4.85
629 640 6.371278 ACTGATTGGATTATCATTTCAGGCT 58.629 36.000 16.27 0.00 34.24 4.58
630 641 6.645790 ACTGATTGGATTATCATTTCAGGC 57.354 37.500 16.27 0.00 34.24 4.85
642 653 9.851686 TTGATTGCTAGTATTACTGATTGGATT 57.148 29.630 6.60 0.00 0.00 3.01
675 686 3.003275 TCGAATCCGCAATCCTTTTATGC 59.997 43.478 0.00 0.00 36.74 3.14
682 693 1.884235 GGATTCGAATCCGCAATCCT 58.116 50.000 34.93 0.47 44.96 3.24
728 2332 1.927174 ACGCATATGACGAGACTTTGC 59.073 47.619 21.03 0.00 0.00 3.68
827 2437 1.229082 AGGAGAGGTTGGGTGCGTA 60.229 57.895 0.00 0.00 0.00 4.42
854 2464 1.493446 AGTTTATAAGGGGCGGGGAAG 59.507 52.381 0.00 0.00 0.00 3.46
858 2468 0.250166 CCGAGTTTATAAGGGGCGGG 60.250 60.000 0.00 0.00 34.08 6.13
1257 2873 2.045132 ATGGCCATGAGGAGGGGT 59.955 61.111 20.04 0.00 36.89 4.95
1260 2876 0.178998 CCTTGATGGCCATGAGGAGG 60.179 60.000 29.15 20.09 36.89 4.30
1266 2882 0.256752 TCTGACCCTTGATGGCCATG 59.743 55.000 26.56 11.08 0.00 3.66
1382 3079 9.952030 TCATACAAATACCAGTAAATCAGTCAA 57.048 29.630 0.00 0.00 0.00 3.18
1422 3119 3.565482 CGTGAACCCCCAATTATGATGAG 59.435 47.826 0.00 0.00 0.00 2.90
1466 3163 2.669364 AGTTCACTGTAAACTACCGCG 58.331 47.619 0.00 0.00 35.25 6.46
1653 3350 7.702348 GCAAAGGATAAAGATATGAAACCACAC 59.298 37.037 0.00 0.00 0.00 3.82
1995 3697 3.341823 CAGGCATAGCATCATCCCTTAC 58.658 50.000 0.00 0.00 0.00 2.34
2069 3776 6.830324 TGGAACATGAATTAAGAAGCTGCTAT 59.170 34.615 0.90 0.00 0.00 2.97
2658 4366 3.672295 CTCCCTCGGCTTGTGCTCC 62.672 68.421 0.00 0.00 39.59 4.70
2981 4689 6.091169 AGGATTTGCAAACGCATAAGAAAATG 59.909 34.615 15.41 0.00 39.68 2.32
2990 4708 0.532115 GGGAGGATTTGCAAACGCAT 59.468 50.000 15.41 7.41 39.68 4.73
3116 4867 1.134521 TCCCGTATCATTGTCTGGCAC 60.135 52.381 0.00 0.00 0.00 5.01
3121 4872 0.389391 CGGCTCCCGTATCATTGTCT 59.611 55.000 0.00 0.00 42.73 3.41
3122 4873 2.900528 CGGCTCCCGTATCATTGTC 58.099 57.895 0.00 0.00 42.73 3.18
3133 4884 2.325583 TGAACATATGAACGGCTCCC 57.674 50.000 10.38 0.00 0.00 4.30
3134 4885 2.808543 GGATGAACATATGAACGGCTCC 59.191 50.000 10.38 4.17 0.00 4.70
3138 4889 4.096231 TGCTTTGGATGAACATATGAACGG 59.904 41.667 10.38 0.00 0.00 4.44
3140 4891 5.039333 GCTGCTTTGGATGAACATATGAAC 58.961 41.667 10.38 3.45 0.00 3.18
3142 4893 4.529897 AGCTGCTTTGGATGAACATATGA 58.470 39.130 10.38 0.00 0.00 2.15
3146 4897 5.726980 TTAAAGCTGCTTTGGATGAACAT 57.273 34.783 31.86 9.18 35.21 2.71
3148 4899 5.928264 ACATTTAAAGCTGCTTTGGATGAAC 59.072 36.000 34.07 0.00 35.21 3.18
3149 4900 6.100404 ACATTTAAAGCTGCTTTGGATGAA 57.900 33.333 34.07 22.38 35.21 2.57
3150 4901 5.336690 GGACATTTAAAGCTGCTTTGGATGA 60.337 40.000 34.07 19.09 35.21 2.92
3151 4902 4.866486 GGACATTTAAAGCTGCTTTGGATG 59.134 41.667 31.86 30.76 35.21 3.51
3152 4903 4.081476 GGGACATTTAAAGCTGCTTTGGAT 60.081 41.667 31.86 22.68 35.21 3.41
3153 4904 3.258123 GGGACATTTAAAGCTGCTTTGGA 59.742 43.478 31.86 21.65 35.21 3.53
3158 4909 2.084546 GACGGGACATTTAAAGCTGCT 58.915 47.619 0.00 0.00 0.00 4.24
3159 4910 1.810151 TGACGGGACATTTAAAGCTGC 59.190 47.619 0.00 0.00 0.00 5.25
3160 4911 2.159707 CGTGACGGGACATTTAAAGCTG 60.160 50.000 0.00 0.00 0.00 4.24
3161 4912 2.073816 CGTGACGGGACATTTAAAGCT 58.926 47.619 0.00 0.00 0.00 3.74
3162 4913 1.802365 ACGTGACGGGACATTTAAAGC 59.198 47.619 10.66 0.00 0.00 3.51
3163 4914 4.460505 GAAACGTGACGGGACATTTAAAG 58.539 43.478 10.66 0.00 0.00 1.85
3164 4915 3.250521 GGAAACGTGACGGGACATTTAAA 59.749 43.478 10.66 0.00 0.00 1.52
3165 4916 2.807392 GGAAACGTGACGGGACATTTAA 59.193 45.455 10.66 0.00 0.00 1.52
3168 4919 0.107081 TGGAAACGTGACGGGACATT 59.893 50.000 10.66 0.00 0.00 2.71
3169 4920 0.107081 TTGGAAACGTGACGGGACAT 59.893 50.000 10.66 0.00 0.00 3.06
3171 4922 0.515564 CATTGGAAACGTGACGGGAC 59.484 55.000 10.66 0.00 0.00 4.46
3172 4923 0.604243 CCATTGGAAACGTGACGGGA 60.604 55.000 10.66 0.00 0.00 5.14
3174 4925 1.231221 TTCCATTGGAAACGTGACGG 58.769 50.000 15.83 0.00 38.93 4.79
3175 4926 3.552604 AATTCCATTGGAAACGTGACG 57.447 42.857 21.52 2.24 45.41 4.35
3183 4934 3.194542 CGCCACCTTAAATTCCATTGGAA 59.805 43.478 20.09 20.09 46.39 3.53
3185 4936 2.159114 CCGCCACCTTAAATTCCATTGG 60.159 50.000 0.00 0.00 0.00 3.16
3187 4938 2.107366 CCCGCCACCTTAAATTCCATT 58.893 47.619 0.00 0.00 0.00 3.16
3189 4940 0.699399 TCCCGCCACCTTAAATTCCA 59.301 50.000 0.00 0.00 0.00 3.53
3190 4941 1.100510 GTCCCGCCACCTTAAATTCC 58.899 55.000 0.00 0.00 0.00 3.01
3191 4942 2.124277 AGTCCCGCCACCTTAAATTC 57.876 50.000 0.00 0.00 0.00 2.17
3192 4943 2.167662 CAAGTCCCGCCACCTTAAATT 58.832 47.619 0.00 0.00 0.00 1.82
3193 4944 1.834188 CAAGTCCCGCCACCTTAAAT 58.166 50.000 0.00 0.00 0.00 1.40
3194 4945 0.891904 GCAAGTCCCGCCACCTTAAA 60.892 55.000 0.00 0.00 0.00 1.52
3196 4947 2.349755 GCAAGTCCCGCCACCTTA 59.650 61.111 0.00 0.00 0.00 2.69
3252 5045 4.234180 GGCAAGGAGATGCTGAAGTACAG 61.234 52.174 0.00 0.00 45.68 2.74
3280 5073 2.228343 ACGAGTAAGCGCTATATCCACC 59.772 50.000 12.05 0.00 33.86 4.61
3282 5075 3.409570 AGACGAGTAAGCGCTATATCCA 58.590 45.455 12.05 0.00 33.86 3.41
3300 5093 2.631418 TCGAAGACAATGACGGAGAC 57.369 50.000 0.00 0.00 0.00 3.36
3313 5106 0.313043 GAACTCACACCGGTCGAAGA 59.687 55.000 2.59 0.00 0.00 2.87
3314 5107 0.666577 GGAACTCACACCGGTCGAAG 60.667 60.000 2.59 4.39 0.00 3.79
3315 5108 1.364901 GGAACTCACACCGGTCGAA 59.635 57.895 2.59 0.00 0.00 3.71
3316 5109 2.911484 CGGAACTCACACCGGTCGA 61.911 63.158 2.59 3.04 44.59 4.20
3317 5110 2.430244 CGGAACTCACACCGGTCG 60.430 66.667 2.59 2.80 44.59 4.79
3322 5115 1.765597 AAGGACCCGGAACTCACACC 61.766 60.000 0.73 0.00 0.00 4.16
3323 5116 0.602905 CAAGGACCCGGAACTCACAC 60.603 60.000 0.73 0.00 0.00 3.82
3324 5117 0.761323 TCAAGGACCCGGAACTCACA 60.761 55.000 0.73 0.00 0.00 3.58
3325 5118 0.037232 CTCAAGGACCCGGAACTCAC 60.037 60.000 0.73 0.00 0.00 3.51
3326 5119 1.192146 CCTCAAGGACCCGGAACTCA 61.192 60.000 0.73 0.00 37.39 3.41
3327 5120 0.903454 TCCTCAAGGACCCGGAACTC 60.903 60.000 0.73 0.00 39.78 3.01
3328 5121 1.157751 TCCTCAAGGACCCGGAACT 59.842 57.895 0.73 0.00 39.78 3.01
3329 5122 3.801620 TCCTCAAGGACCCGGAAC 58.198 61.111 0.73 0.00 39.78 3.62
3353 5146 4.194720 ACTCCGATGTCTCGCCGC 62.195 66.667 0.00 0.00 43.66 6.53
3381 5174 0.317160 CAAGGCACAGGTGAGTACGA 59.683 55.000 3.10 0.00 0.00 3.43
3384 5177 1.895798 CTCTCAAGGCACAGGTGAGTA 59.104 52.381 3.10 0.00 39.82 2.59
3389 5182 0.617413 CATCCTCTCAAGGCACAGGT 59.383 55.000 0.00 0.00 43.02 4.00
3400 5193 1.281899 CGGCGAAAGTTCATCCTCTC 58.718 55.000 0.00 0.00 0.00 3.20
3407 5200 2.736995 CTCGGCGGCGAAAGTTCA 60.737 61.111 33.90 11.10 0.00 3.18
3416 5209 2.202756 CTCCACTAACTCGGCGGC 60.203 66.667 7.21 0.00 0.00 6.53
3420 5213 1.471676 GCACATCCTCCACTAACTCGG 60.472 57.143 0.00 0.00 0.00 4.63
3422 5215 1.834263 AGGCACATCCTCCACTAACTC 59.166 52.381 0.00 0.00 43.20 3.01
3426 5219 0.909133 TGCAGGCACATCCTCCACTA 60.909 55.000 0.00 0.00 45.52 2.74
3428 5221 2.042831 GTGCAGGCACATCCTCCAC 61.043 63.158 18.84 0.00 45.70 4.02
3459 5252 3.365265 CCTCCCCTTGCACGCAAC 61.365 66.667 0.00 0.00 0.00 4.17
3478 5271 3.334054 AAGGTGCTGCCCTCTCCC 61.334 66.667 9.63 0.00 38.26 4.30
3480 5273 0.957888 GTTGAAGGTGCTGCCCTCTC 60.958 60.000 9.63 9.77 38.26 3.20
3481 5274 1.073897 GTTGAAGGTGCTGCCCTCT 59.926 57.895 9.63 2.17 38.26 3.69
3483 5276 2.281761 CGTTGAAGGTGCTGCCCT 60.282 61.111 0.00 0.00 38.26 5.19
3492 5285 3.195698 GCCTAGCCGCGTTGAAGG 61.196 66.667 4.92 7.52 0.00 3.46
3509 5302 2.182030 GAGAAGGAGTCGCCACCG 59.818 66.667 0.00 0.00 40.02 4.94
3541 5340 2.107953 GGAGCAGGAGTCGCCATC 59.892 66.667 0.00 0.00 40.02 3.51
3568 5367 3.089784 CCTCCAAATCGAACGCCG 58.910 61.111 0.00 0.00 40.25 6.46
3606 5405 2.366570 GCCTCCTCTCCTCCCTGT 59.633 66.667 0.00 0.00 0.00 4.00
3626 5534 2.805353 CGCTGACGGGTGAAGACG 60.805 66.667 0.00 0.00 34.97 4.18
3657 5565 4.473520 CCGCGTCAATGGGGAGCT 62.474 66.667 4.92 0.00 44.30 4.09
3665 5573 2.867472 CTTTTCCGCCGCGTCAAT 59.133 55.556 12.58 0.00 0.00 2.57
3703 5611 1.592223 CTCCTCCAAGACCACGGTC 59.408 63.158 8.23 8.23 44.86 4.79
3704 5612 2.584391 GCTCCTCCAAGACCACGGT 61.584 63.158 0.00 0.00 0.00 4.83
3705 5613 2.111999 TTGCTCCTCCAAGACCACGG 62.112 60.000 0.00 0.00 0.00 4.94
3706 5614 0.671781 CTTGCTCCTCCAAGACCACG 60.672 60.000 0.00 0.00 43.79 4.94
3707 5615 0.957888 GCTTGCTCCTCCAAGACCAC 60.958 60.000 6.12 0.00 43.79 4.16
3708 5616 1.376466 GCTTGCTCCTCCAAGACCA 59.624 57.895 6.12 0.00 43.79 4.02
3709 5617 0.957888 GTGCTTGCTCCTCCAAGACC 60.958 60.000 6.12 0.00 43.79 3.85
3710 5618 0.957888 GGTGCTTGCTCCTCCAAGAC 60.958 60.000 6.12 2.27 43.79 3.01
3711 5619 1.376466 GGTGCTTGCTCCTCCAAGA 59.624 57.895 6.12 0.00 43.79 3.02
3712 5620 2.037136 CGGTGCTTGCTCCTCCAAG 61.037 63.158 11.23 0.00 43.88 3.61
3713 5621 2.032528 CGGTGCTTGCTCCTCCAA 59.967 61.111 11.23 0.00 0.00 3.53
3714 5622 2.454832 CTTCGGTGCTTGCTCCTCCA 62.455 60.000 11.23 0.00 0.00 3.86
3715 5623 1.743252 CTTCGGTGCTTGCTCCTCC 60.743 63.158 11.23 0.88 0.00 4.30
3716 5624 2.394563 GCTTCGGTGCTTGCTCCTC 61.395 63.158 11.23 0.00 0.00 3.71
3717 5625 2.359230 GCTTCGGTGCTTGCTCCT 60.359 61.111 11.23 0.00 0.00 3.69
3718 5626 1.986575 GATGCTTCGGTGCTTGCTCC 61.987 60.000 3.83 3.83 0.00 4.70
3719 5627 1.300971 TGATGCTTCGGTGCTTGCTC 61.301 55.000 2.64 0.00 0.00 4.26
3720 5628 0.890542 TTGATGCTTCGGTGCTTGCT 60.891 50.000 2.64 0.00 0.00 3.91
3721 5629 1.580942 TTGATGCTTCGGTGCTTGC 59.419 52.632 2.64 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.