Multiple sequence alignment - TraesCS1D01G165000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G165000 chr1D 100.000 3879 0 0 1 3879 236094672 236090794 0.000000e+00 7164.0
1 TraesCS1D01G165000 chr1D 95.823 2083 57 16 637 2704 235987474 235985407 0.000000e+00 3338.0
2 TraesCS1D01G165000 chr1D 90.041 492 39 5 3398 3879 66400963 66401454 2.540000e-176 628.0
3 TraesCS1D01G165000 chr1D 90.664 482 22 5 2745 3216 235984054 235983586 1.530000e-173 619.0
4 TraesCS1D01G165000 chr1B 95.339 2553 70 13 588 3126 341380716 341378199 0.000000e+00 4010.0
5 TraesCS1D01G165000 chr1A 95.250 2358 69 21 743 3075 309789398 309791737 0.000000e+00 3694.0
6 TraesCS1D01G165000 chr1A 88.312 77 6 2 549 625 309788501 309788574 5.340000e-14 89.8
7 TraesCS1D01G165000 chr2D 98.540 548 8 0 1 548 360272469 360273016 0.000000e+00 968.0
8 TraesCS1D01G165000 chr6D 94.033 486 22 6 3401 3879 86639343 86638858 0.000000e+00 730.0
9 TraesCS1D01G165000 chr5D 93.293 492 26 3 3395 3879 424819118 424819609 0.000000e+00 719.0
10 TraesCS1D01G165000 chr5D 90.852 481 32 7 3405 3879 444737647 444738121 5.470000e-178 634.0
11 TraesCS1D01G165000 chr5D 81.524 433 73 7 1156 1586 445720623 445720196 2.220000e-92 350.0
12 TraesCS1D01G165000 chr7D 93.347 481 23 5 3405 3879 599719444 599718967 0.000000e+00 702.0
13 TraesCS1D01G165000 chr7D 86.458 288 33 5 263 548 334867913 334868196 1.050000e-80 311.0
14 TraesCS1D01G165000 chr7D 81.545 233 40 3 1355 1586 8985603 8985833 5.120000e-44 189.0
15 TraesCS1D01G165000 chr3A 92.608 487 30 5 3397 3879 743517345 743517829 0.000000e+00 695.0
16 TraesCS1D01G165000 chr7A 92.050 478 35 2 3405 3879 65032530 65033007 0.000000e+00 669.0
17 TraesCS1D01G165000 chr7A 85.409 281 40 1 268 548 595998839 595999118 1.360000e-74 291.0
18 TraesCS1D01G165000 chr7A 78.291 433 87 7 1156 1586 9411335 9411762 4.940000e-69 272.0
19 TraesCS1D01G165000 chr2A 91.376 487 37 4 3398 3879 588429765 588429279 0.000000e+00 662.0
20 TraesCS1D01G165000 chr5A 90.816 490 36 5 3399 3879 446424927 446425416 0.000000e+00 647.0
21 TraesCS1D01G165000 chr5A 81.507 438 70 10 1156 1586 563376389 563375956 2.220000e-92 350.0
22 TraesCS1D01G165000 chr3D 86.195 297 38 3 268 563 610787959 610788253 6.250000e-83 318.0
23 TraesCS1D01G165000 chr3D 84.229 279 37 7 272 547 500222905 500223179 8.260000e-67 265.0
24 TraesCS1D01G165000 chr6B 86.380 279 37 1 271 549 720530055 720529778 1.750000e-78 303.0
25 TraesCS1D01G165000 chr4A 79.215 433 82 7 1156 1586 730786894 730786468 1.050000e-75 294.0
26 TraesCS1D01G165000 chr4A 85.560 277 40 0 272 548 645335184 645334908 1.360000e-74 291.0
27 TraesCS1D01G165000 chr4A 84.321 287 42 3 268 552 733538444 733538159 1.060000e-70 278.0
28 TraesCS1D01G165000 chr4A 77.136 433 90 7 1156 1586 730199048 730198623 3.870000e-60 243.0
29 TraesCS1D01G165000 chr5B 84.452 283 40 4 268 549 536575431 536575710 3.820000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G165000 chr1D 236090794 236094672 3878 True 7164.0 7164 100.0000 1 3879 1 chr1D.!!$R1 3878
1 TraesCS1D01G165000 chr1D 235983586 235987474 3888 True 1978.5 3338 93.2435 637 3216 2 chr1D.!!$R2 2579
2 TraesCS1D01G165000 chr1B 341378199 341380716 2517 True 4010.0 4010 95.3390 588 3126 1 chr1B.!!$R1 2538
3 TraesCS1D01G165000 chr1A 309788501 309791737 3236 False 1891.9 3694 91.7810 549 3075 2 chr1A.!!$F1 2526
4 TraesCS1D01G165000 chr2D 360272469 360273016 547 False 968.0 968 98.5400 1 548 1 chr2D.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.030638 CGCCCAAAACCAGTGAACAG 59.969 55.000 0.00 0.00 0.00 3.16 F
797 1526 0.394192 CAGAGCTCACACCCTCACAA 59.606 55.000 17.77 0.00 0.00 3.33 F
1067 1812 0.238289 CAAAACACACCAGCTAGCCG 59.762 55.000 12.13 0.00 0.00 5.52 F
1658 2413 1.485943 CGAGCGTGATCGATGCATG 59.514 57.895 2.46 7.61 45.56 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1067 1812 0.099436 GAAGGTGATCAATGGTGCGC 59.901 55.000 0.0 0.0 0.00 6.09 R
1659 2414 2.200170 GAACAACGGTCAGCCATGCC 62.200 60.000 0.0 0.0 34.09 4.40 R
2162 2920 2.768492 CGCGTTCCCGTAGTAGCCT 61.768 63.158 0.0 0.0 36.15 4.58 R
3347 5450 0.029567 GACAGATAGGGCGACGACTG 59.970 60.000 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 236 0.030638 CGCCCAAAACCAGTGAACAG 59.969 55.000 0.00 0.00 0.00 3.16
395 396 0.766131 TAAGCAGAAAACGGGACCCA 59.234 50.000 12.15 0.00 0.00 4.51
440 441 1.742761 CCAAATCCGCTGATCAGTGT 58.257 50.000 29.40 13.55 37.24 3.55
441 442 1.667724 CCAAATCCGCTGATCAGTGTC 59.332 52.381 29.40 11.41 37.24 3.67
577 578 7.445096 TGAATGAGATATGTATTGCCGTGAATT 59.555 33.333 0.00 0.00 0.00 2.17
578 579 7.750229 ATGAGATATGTATTGCCGTGAATTT 57.250 32.000 0.00 0.00 0.00 1.82
579 580 7.566760 TGAGATATGTATTGCCGTGAATTTT 57.433 32.000 0.00 0.00 0.00 1.82
675 1404 3.763360 TCACGATTTGAGCCATCCATTTT 59.237 39.130 0.00 0.00 0.00 1.82
716 1445 0.560688 AGGCTGACCCCTTTTCCAAA 59.439 50.000 0.00 0.00 36.11 3.28
717 1446 1.149923 AGGCTGACCCCTTTTCCAAAT 59.850 47.619 0.00 0.00 36.11 2.32
718 1447 1.977854 GGCTGACCCCTTTTCCAAATT 59.022 47.619 0.00 0.00 0.00 1.82
719 1448 2.028112 GGCTGACCCCTTTTCCAAATTC 60.028 50.000 0.00 0.00 0.00 2.17
720 1449 2.028112 GCTGACCCCTTTTCCAAATTCC 60.028 50.000 0.00 0.00 0.00 3.01
721 1450 3.238597 CTGACCCCTTTTCCAAATTCCA 58.761 45.455 0.00 0.00 0.00 3.53
722 1451 3.645687 CTGACCCCTTTTCCAAATTCCAA 59.354 43.478 0.00 0.00 0.00 3.53
797 1526 0.394192 CAGAGCTCACACCCTCACAA 59.606 55.000 17.77 0.00 0.00 3.33
927 1661 4.857509 AGAAGAGAGCGTCAGTAAACTT 57.142 40.909 0.00 0.00 0.00 2.66
1052 1797 2.031120 ACAAACCTAGCAGCAGCAAAA 58.969 42.857 3.17 0.00 45.49 2.44
1053 1798 2.223805 ACAAACCTAGCAGCAGCAAAAC 60.224 45.455 3.17 0.00 45.49 2.43
1054 1799 1.691196 AACCTAGCAGCAGCAAAACA 58.309 45.000 3.17 0.00 45.49 2.83
1055 1800 0.954452 ACCTAGCAGCAGCAAAACAC 59.046 50.000 3.17 0.00 45.49 3.32
1056 1801 0.953727 CCTAGCAGCAGCAAAACACA 59.046 50.000 3.17 0.00 45.49 3.72
1057 1802 1.335324 CCTAGCAGCAGCAAAACACAC 60.335 52.381 3.17 0.00 45.49 3.82
1058 1803 0.667993 TAGCAGCAGCAAAACACACC 59.332 50.000 3.17 0.00 45.49 4.16
1059 1804 1.141449 GCAGCAGCAAAACACACCA 59.859 52.632 0.00 0.00 41.58 4.17
1060 1805 0.872881 GCAGCAGCAAAACACACCAG 60.873 55.000 0.00 0.00 41.58 4.00
1061 1806 0.872881 CAGCAGCAAAACACACCAGC 60.873 55.000 0.00 0.00 0.00 4.85
1062 1807 1.039233 AGCAGCAAAACACACCAGCT 61.039 50.000 0.00 0.00 35.63 4.24
1063 1808 0.667993 GCAGCAAAACACACCAGCTA 59.332 50.000 0.00 0.00 33.59 3.32
1064 1809 1.335324 GCAGCAAAACACACCAGCTAG 60.335 52.381 0.00 0.00 33.59 3.42
1067 1812 0.238289 CAAAACACACCAGCTAGCCG 59.762 55.000 12.13 0.00 0.00 5.52
1255 2010 1.725557 CGGACATCGACGACCAGGAT 61.726 60.000 0.00 0.00 42.43 3.24
1607 2362 4.292977 ACTTTGCCTTTCTTTCGTGAAG 57.707 40.909 0.00 0.00 36.67 3.02
1654 2409 2.909986 CGTGCGAGCGTGATCGATG 61.910 63.158 12.14 0.00 45.56 3.84
1655 2410 2.956439 TGCGAGCGTGATCGATGC 60.956 61.111 12.14 0.00 45.56 3.91
1656 2411 2.956439 GCGAGCGTGATCGATGCA 60.956 61.111 12.14 0.00 45.56 3.96
1657 2412 2.305853 GCGAGCGTGATCGATGCAT 61.306 57.895 12.14 0.00 45.56 3.96
1658 2413 1.485943 CGAGCGTGATCGATGCATG 59.514 57.895 2.46 7.61 45.56 4.06
1659 2414 1.858041 GAGCGTGATCGATGCATGG 59.142 57.895 2.46 2.00 39.30 3.66
2297 3055 1.518572 CGTGGAGTACATGCGGTCC 60.519 63.158 0.00 0.00 0.00 4.46
2402 3160 3.692406 GGCGACCTGGACTTCGGT 61.692 66.667 0.00 0.00 35.73 4.69
2714 4792 5.392595 CCCGGTTATTTGTTGGTGAATAGTG 60.393 44.000 0.00 0.00 0.00 2.74
2716 4794 5.392595 CGGTTATTTGTTGGTGAATAGTGGG 60.393 44.000 0.00 0.00 0.00 4.61
2730 4818 7.118825 GGTGAATAGTGGGAAGTTGTTAGTAAC 59.881 40.741 6.06 6.06 0.00 2.50
2735 4823 7.128234 AGTGGGAAGTTGTTAGTAACTACAA 57.872 36.000 23.49 6.17 39.86 2.41
2821 4909 2.169789 CAAGGCTCGTCGGATGCAG 61.170 63.158 0.00 0.00 0.00 4.41
2861 4954 3.217681 TGGGTTGTAAAAGGGTGACTC 57.782 47.619 0.00 0.00 0.00 3.36
2976 5079 1.948104 CCTGTCTCCACGAAACAACA 58.052 50.000 0.00 0.00 0.00 3.33
2977 5080 2.285083 CCTGTCTCCACGAAACAACAA 58.715 47.619 0.00 0.00 0.00 2.83
3010 5113 1.953686 GTGTTGGCTGCCTTTCTTGTA 59.046 47.619 21.03 0.00 0.00 2.41
3096 5199 2.299521 GTAGTACATGCTCCTCGACCT 58.700 52.381 0.00 0.00 0.00 3.85
3160 5263 9.691362 GTTTCTGCCTAATTCATCAAGTTTTTA 57.309 29.630 0.00 0.00 0.00 1.52
3161 5264 9.912634 TTTCTGCCTAATTCATCAAGTTTTTAG 57.087 29.630 0.00 0.00 0.00 1.85
3163 5266 9.077885 TCTGCCTAATTCATCAAGTTTTTAGTT 57.922 29.630 0.00 0.00 0.00 2.24
3164 5267 9.696917 CTGCCTAATTCATCAAGTTTTTAGTTT 57.303 29.630 0.00 0.00 0.00 2.66
3237 5340 8.961294 AATTCATTGTTCAAATGTTCTGGAAA 57.039 26.923 0.00 0.00 0.00 3.13
3238 5341 7.769272 TTCATTGTTCAAATGTTCTGGAAAC 57.231 32.000 0.00 0.00 0.00 2.78
3239 5342 7.111247 TCATTGTTCAAATGTTCTGGAAACT 57.889 32.000 0.00 0.00 0.00 2.66
3240 5343 8.231692 TCATTGTTCAAATGTTCTGGAAACTA 57.768 30.769 0.00 0.00 0.00 2.24
3241 5344 8.690884 TCATTGTTCAAATGTTCTGGAAACTAA 58.309 29.630 0.00 0.00 0.00 2.24
3242 5345 9.311916 CATTGTTCAAATGTTCTGGAAACTAAA 57.688 29.630 0.00 0.00 0.00 1.85
3243 5346 9.883142 ATTGTTCAAATGTTCTGGAAACTAAAA 57.117 25.926 0.00 0.00 0.00 1.52
3244 5347 8.696410 TGTTCAAATGTTCTGGAAACTAAAAC 57.304 30.769 0.00 0.00 0.00 2.43
3245 5348 8.527810 TGTTCAAATGTTCTGGAAACTAAAACT 58.472 29.630 0.00 0.00 0.00 2.66
3246 5349 9.020813 GTTCAAATGTTCTGGAAACTAAAACTC 57.979 33.333 0.00 0.00 0.00 3.01
3247 5350 7.712797 TCAAATGTTCTGGAAACTAAAACTCC 58.287 34.615 0.00 0.00 0.00 3.85
3248 5351 6.650427 AATGTTCTGGAAACTAAAACTCCC 57.350 37.500 0.00 0.00 0.00 4.30
3249 5352 4.131596 TGTTCTGGAAACTAAAACTCCCG 58.868 43.478 0.00 0.00 0.00 5.14
3250 5353 2.774687 TCTGGAAACTAAAACTCCCGC 58.225 47.619 0.00 0.00 0.00 6.13
3251 5354 2.105134 TCTGGAAACTAAAACTCCCGCA 59.895 45.455 0.00 0.00 0.00 5.69
3252 5355 2.882137 CTGGAAACTAAAACTCCCGCAA 59.118 45.455 0.00 0.00 0.00 4.85
3253 5356 3.492337 TGGAAACTAAAACTCCCGCAAT 58.508 40.909 0.00 0.00 0.00 3.56
3254 5357 4.653868 TGGAAACTAAAACTCCCGCAATA 58.346 39.130 0.00 0.00 0.00 1.90
3255 5358 5.071370 TGGAAACTAAAACTCCCGCAATAA 58.929 37.500 0.00 0.00 0.00 1.40
3256 5359 5.712917 TGGAAACTAAAACTCCCGCAATAAT 59.287 36.000 0.00 0.00 0.00 1.28
3257 5360 6.209788 TGGAAACTAAAACTCCCGCAATAATT 59.790 34.615 0.00 0.00 0.00 1.40
3258 5361 7.094631 GGAAACTAAAACTCCCGCAATAATTT 58.905 34.615 0.00 0.00 0.00 1.82
3259 5362 8.245491 GGAAACTAAAACTCCCGCAATAATTTA 58.755 33.333 0.00 0.00 0.00 1.40
3260 5363 9.285770 GAAACTAAAACTCCCGCAATAATTTAG 57.714 33.333 0.00 0.00 35.85 1.85
3261 5364 6.792326 ACTAAAACTCCCGCAATAATTTAGC 58.208 36.000 0.00 0.00 34.06 3.09
3262 5365 4.649088 AAACTCCCGCAATAATTTAGCC 57.351 40.909 0.00 0.00 0.00 3.93
3263 5366 3.290948 ACTCCCGCAATAATTTAGCCA 57.709 42.857 0.00 0.00 0.00 4.75
3264 5367 3.626930 ACTCCCGCAATAATTTAGCCAA 58.373 40.909 0.00 0.00 0.00 4.52
3265 5368 4.020543 ACTCCCGCAATAATTTAGCCAAA 58.979 39.130 0.00 0.00 0.00 3.28
3266 5369 4.097892 ACTCCCGCAATAATTTAGCCAAAG 59.902 41.667 0.00 0.00 0.00 2.77
3267 5370 4.020543 TCCCGCAATAATTTAGCCAAAGT 58.979 39.130 0.00 0.00 0.00 2.66
3268 5371 4.097286 TCCCGCAATAATTTAGCCAAAGTC 59.903 41.667 0.00 0.00 0.00 3.01
3269 5372 4.359706 CCGCAATAATTTAGCCAAAGTCC 58.640 43.478 0.00 0.00 0.00 3.85
3270 5373 4.359706 CGCAATAATTTAGCCAAAGTCCC 58.640 43.478 0.00 0.00 0.00 4.46
3271 5374 4.142271 CGCAATAATTTAGCCAAAGTCCCA 60.142 41.667 0.00 0.00 0.00 4.37
3272 5375 5.351458 GCAATAATTTAGCCAAAGTCCCAG 58.649 41.667 0.00 0.00 0.00 4.45
3273 5376 5.351458 CAATAATTTAGCCAAAGTCCCAGC 58.649 41.667 0.00 0.00 0.00 4.85
3274 5377 1.852633 ATTTAGCCAAAGTCCCAGCC 58.147 50.000 0.00 0.00 0.00 4.85
3275 5378 0.251608 TTTAGCCAAAGTCCCAGCCC 60.252 55.000 0.00 0.00 0.00 5.19
3276 5379 1.431195 TTAGCCAAAGTCCCAGCCCA 61.431 55.000 0.00 0.00 0.00 5.36
3277 5380 1.214305 TAGCCAAAGTCCCAGCCCAT 61.214 55.000 0.00 0.00 0.00 4.00
3278 5381 1.610379 GCCAAAGTCCCAGCCCATT 60.610 57.895 0.00 0.00 0.00 3.16
3279 5382 1.607801 GCCAAAGTCCCAGCCCATTC 61.608 60.000 0.00 0.00 0.00 2.67
3280 5383 0.972471 CCAAAGTCCCAGCCCATTCC 60.972 60.000 0.00 0.00 0.00 3.01
3281 5384 0.040204 CAAAGTCCCAGCCCATTCCT 59.960 55.000 0.00 0.00 0.00 3.36
3282 5385 0.040204 AAAGTCCCAGCCCATTCCTG 59.960 55.000 0.00 0.00 0.00 3.86
3283 5386 1.142688 AAGTCCCAGCCCATTCCTGT 61.143 55.000 0.00 0.00 0.00 4.00
3284 5387 0.253160 AGTCCCAGCCCATTCCTGTA 60.253 55.000 0.00 0.00 0.00 2.74
3285 5388 0.181350 GTCCCAGCCCATTCCTGTAG 59.819 60.000 0.00 0.00 0.00 2.74
3286 5389 1.152881 CCCAGCCCATTCCTGTAGC 60.153 63.158 0.00 0.00 0.00 3.58
3287 5390 1.639635 CCCAGCCCATTCCTGTAGCT 61.640 60.000 0.00 0.00 32.05 3.32
3288 5391 1.131638 CCAGCCCATTCCTGTAGCTA 58.868 55.000 0.00 0.00 31.07 3.32
3289 5392 1.071385 CCAGCCCATTCCTGTAGCTAG 59.929 57.143 0.00 0.00 31.07 3.42
3290 5393 2.042464 CAGCCCATTCCTGTAGCTAGA 58.958 52.381 0.00 0.00 31.07 2.43
3291 5394 2.636893 CAGCCCATTCCTGTAGCTAGAT 59.363 50.000 0.00 0.00 31.07 1.98
3292 5395 2.636893 AGCCCATTCCTGTAGCTAGATG 59.363 50.000 0.00 0.00 30.61 2.90
3293 5396 2.873649 GCCCATTCCTGTAGCTAGATGC 60.874 54.545 0.00 0.00 43.29 3.91
3309 5412 4.886496 AGATGCTGCTAGCTCAATATCA 57.114 40.909 17.23 0.00 42.97 2.15
3310 5413 4.823157 AGATGCTGCTAGCTCAATATCAG 58.177 43.478 17.23 3.05 42.97 2.90
3311 5414 3.397849 TGCTGCTAGCTCAATATCAGG 57.602 47.619 17.23 0.00 42.97 3.86
3312 5415 2.075338 GCTGCTAGCTCAATATCAGGC 58.925 52.381 17.23 1.46 38.45 4.85
3313 5416 2.697654 CTGCTAGCTCAATATCAGGCC 58.302 52.381 17.23 0.00 0.00 5.19
3314 5417 2.038164 CTGCTAGCTCAATATCAGGCCA 59.962 50.000 17.23 0.00 0.00 5.36
3315 5418 2.038164 TGCTAGCTCAATATCAGGCCAG 59.962 50.000 17.23 0.00 0.00 4.85
3316 5419 2.301296 GCTAGCTCAATATCAGGCCAGA 59.699 50.000 7.70 1.39 0.00 3.86
3317 5420 3.244353 GCTAGCTCAATATCAGGCCAGAA 60.244 47.826 7.70 0.00 0.00 3.02
3318 5421 4.565236 GCTAGCTCAATATCAGGCCAGAAT 60.565 45.833 7.70 0.00 0.00 2.40
3319 5422 3.752665 AGCTCAATATCAGGCCAGAATG 58.247 45.455 5.01 4.01 0.00 2.67
3338 5441 8.830201 CAGAATGGACCTCTAGAATATTTCTG 57.170 38.462 11.91 11.91 40.94 3.02
3339 5442 7.877097 CAGAATGGACCTCTAGAATATTTCTGG 59.123 40.741 15.32 5.73 40.94 3.86
3340 5443 5.552870 TGGACCTCTAGAATATTTCTGGC 57.447 43.478 0.00 0.00 40.94 4.85
3341 5444 4.968719 TGGACCTCTAGAATATTTCTGGCA 59.031 41.667 0.00 0.00 40.94 4.92
3342 5445 5.428457 TGGACCTCTAGAATATTTCTGGCAA 59.572 40.000 0.00 0.00 40.94 4.52
3343 5446 6.069673 TGGACCTCTAGAATATTTCTGGCAAA 60.070 38.462 0.00 0.00 40.94 3.68
3344 5447 6.828785 GGACCTCTAGAATATTTCTGGCAAAA 59.171 38.462 0.00 0.00 40.94 2.44
3345 5448 7.503902 GGACCTCTAGAATATTTCTGGCAAAAT 59.496 37.037 10.81 10.81 40.94 1.82
3346 5449 8.457238 ACCTCTAGAATATTTCTGGCAAAATC 57.543 34.615 9.76 0.87 40.94 2.17
3347 5450 7.503902 ACCTCTAGAATATTTCTGGCAAAATCC 59.496 37.037 9.76 3.95 40.94 3.01
3348 5451 7.503566 CCTCTAGAATATTTCTGGCAAAATCCA 59.496 37.037 9.76 0.00 40.94 3.41
3355 5458 0.443869 CTGGCAAAATCCAGTCGTCG 59.556 55.000 1.80 0.00 46.59 5.12
3356 5459 1.134694 GGCAAAATCCAGTCGTCGC 59.865 57.895 0.00 0.00 0.00 5.19
3357 5460 1.134694 GCAAAATCCAGTCGTCGCC 59.865 57.895 0.00 0.00 0.00 5.54
3358 5461 1.794222 CAAAATCCAGTCGTCGCCC 59.206 57.895 0.00 0.00 0.00 6.13
3359 5462 0.673644 CAAAATCCAGTCGTCGCCCT 60.674 55.000 0.00 0.00 0.00 5.19
3360 5463 0.899720 AAAATCCAGTCGTCGCCCTA 59.100 50.000 0.00 0.00 0.00 3.53
3361 5464 1.120530 AAATCCAGTCGTCGCCCTAT 58.879 50.000 0.00 0.00 0.00 2.57
3362 5465 0.674534 AATCCAGTCGTCGCCCTATC 59.325 55.000 0.00 0.00 0.00 2.08
3363 5466 0.178987 ATCCAGTCGTCGCCCTATCT 60.179 55.000 0.00 0.00 0.00 1.98
3364 5467 1.101635 TCCAGTCGTCGCCCTATCTG 61.102 60.000 0.00 0.00 0.00 2.90
3365 5468 1.384989 CCAGTCGTCGCCCTATCTGT 61.385 60.000 0.00 0.00 0.00 3.41
3366 5469 0.029567 CAGTCGTCGCCCTATCTGTC 59.970 60.000 0.00 0.00 0.00 3.51
3367 5470 1.102222 AGTCGTCGCCCTATCTGTCC 61.102 60.000 0.00 0.00 0.00 4.02
3368 5471 2.184830 TCGTCGCCCTATCTGTCCG 61.185 63.158 0.00 0.00 0.00 4.79
3369 5472 2.478890 CGTCGCCCTATCTGTCCGT 61.479 63.158 0.00 0.00 0.00 4.69
3370 5473 1.359475 GTCGCCCTATCTGTCCGTC 59.641 63.158 0.00 0.00 0.00 4.79
3371 5474 1.102222 GTCGCCCTATCTGTCCGTCT 61.102 60.000 0.00 0.00 0.00 4.18
3372 5475 0.395311 TCGCCCTATCTGTCCGTCTT 60.395 55.000 0.00 0.00 0.00 3.01
3373 5476 0.460311 CGCCCTATCTGTCCGTCTTT 59.540 55.000 0.00 0.00 0.00 2.52
3374 5477 1.536284 CGCCCTATCTGTCCGTCTTTC 60.536 57.143 0.00 0.00 0.00 2.62
3375 5478 1.757699 GCCCTATCTGTCCGTCTTTCT 59.242 52.381 0.00 0.00 0.00 2.52
3376 5479 2.957006 GCCCTATCTGTCCGTCTTTCTA 59.043 50.000 0.00 0.00 0.00 2.10
3377 5480 3.574826 GCCCTATCTGTCCGTCTTTCTAT 59.425 47.826 0.00 0.00 0.00 1.98
3378 5481 4.559704 GCCCTATCTGTCCGTCTTTCTATG 60.560 50.000 0.00 0.00 0.00 2.23
3379 5482 4.021894 CCCTATCTGTCCGTCTTTCTATGG 60.022 50.000 0.00 0.00 0.00 2.74
3380 5483 4.827835 CCTATCTGTCCGTCTTTCTATGGA 59.172 45.833 0.00 0.00 31.92 3.41
3381 5484 4.927978 ATCTGTCCGTCTTTCTATGGAG 57.072 45.455 0.00 0.00 35.18 3.86
3382 5485 3.698289 TCTGTCCGTCTTTCTATGGAGT 58.302 45.455 0.00 0.00 35.18 3.85
3383 5486 3.444034 TCTGTCCGTCTTTCTATGGAGTG 59.556 47.826 0.00 0.00 35.18 3.51
3384 5487 2.094182 TGTCCGTCTTTCTATGGAGTGC 60.094 50.000 0.00 0.00 35.18 4.40
3385 5488 2.166664 GTCCGTCTTTCTATGGAGTGCT 59.833 50.000 0.00 0.00 35.18 4.40
3386 5489 2.427453 TCCGTCTTTCTATGGAGTGCTC 59.573 50.000 0.00 0.00 30.80 4.26
3387 5490 2.455032 CGTCTTTCTATGGAGTGCTCG 58.545 52.381 0.00 0.00 0.00 5.03
3388 5491 2.159366 CGTCTTTCTATGGAGTGCTCGT 60.159 50.000 0.00 0.00 0.00 4.18
3389 5492 3.673594 CGTCTTTCTATGGAGTGCTCGTT 60.674 47.826 0.00 0.00 0.00 3.85
3390 5493 3.860536 GTCTTTCTATGGAGTGCTCGTTC 59.139 47.826 0.00 0.00 0.00 3.95
3391 5494 2.961526 TTCTATGGAGTGCTCGTTCC 57.038 50.000 0.00 0.00 0.00 3.62
3392 5495 0.738975 TCTATGGAGTGCTCGTTCCG 59.261 55.000 0.00 0.00 36.22 4.30
3393 5496 0.872021 CTATGGAGTGCTCGTTCCGC 60.872 60.000 0.00 0.00 36.22 5.54
3394 5497 2.607668 TATGGAGTGCTCGTTCCGCG 62.608 60.000 0.00 0.00 43.01 6.46
3400 5503 4.807039 GCTCGTTCCGCGCCCTAA 62.807 66.667 0.00 0.00 41.07 2.69
3401 5504 2.582498 CTCGTTCCGCGCCCTAAG 60.582 66.667 0.00 0.00 41.07 2.18
3402 5505 3.060020 CTCGTTCCGCGCCCTAAGA 62.060 63.158 0.00 0.00 41.07 2.10
3403 5506 2.125832 CGTTCCGCGCCCTAAGAA 60.126 61.111 0.00 0.00 0.00 2.52
3404 5507 2.450345 CGTTCCGCGCCCTAAGAAC 61.450 63.158 0.00 7.11 36.19 3.01
3405 5508 1.375013 GTTCCGCGCCCTAAGAACA 60.375 57.895 15.68 0.00 38.74 3.18
3406 5509 0.743345 GTTCCGCGCCCTAAGAACAT 60.743 55.000 15.68 0.00 38.74 2.71
3407 5510 0.461339 TTCCGCGCCCTAAGAACATC 60.461 55.000 0.00 0.00 0.00 3.06
3408 5511 1.144057 CCGCGCCCTAAGAACATCT 59.856 57.895 0.00 0.00 0.00 2.90
3409 5512 0.876342 CCGCGCCCTAAGAACATCTC 60.876 60.000 0.00 0.00 0.00 2.75
3410 5513 0.876342 CGCGCCCTAAGAACATCTCC 60.876 60.000 0.00 0.00 0.00 3.71
3411 5514 0.178068 GCGCCCTAAGAACATCTCCA 59.822 55.000 0.00 0.00 0.00 3.86
3412 5515 1.406887 GCGCCCTAAGAACATCTCCAA 60.407 52.381 0.00 0.00 0.00 3.53
3413 5516 2.746472 GCGCCCTAAGAACATCTCCAAT 60.746 50.000 0.00 0.00 0.00 3.16
3414 5517 3.494398 GCGCCCTAAGAACATCTCCAATA 60.494 47.826 0.00 0.00 0.00 1.90
3415 5518 4.310769 CGCCCTAAGAACATCTCCAATAG 58.689 47.826 0.00 0.00 0.00 1.73
3416 5519 4.068599 GCCCTAAGAACATCTCCAATAGC 58.931 47.826 0.00 0.00 0.00 2.97
3417 5520 4.646572 CCCTAAGAACATCTCCAATAGCC 58.353 47.826 0.00 0.00 0.00 3.93
3418 5521 4.310769 CCTAAGAACATCTCCAATAGCCG 58.689 47.826 0.00 0.00 0.00 5.52
3419 5522 2.246719 AGAACATCTCCAATAGCCGC 57.753 50.000 0.00 0.00 0.00 6.53
3420 5523 0.861837 GAACATCTCCAATAGCCGCG 59.138 55.000 0.00 0.00 0.00 6.46
3421 5524 1.160329 AACATCTCCAATAGCCGCGC 61.160 55.000 0.00 0.00 0.00 6.86
3422 5525 2.031163 ATCTCCAATAGCCGCGCC 59.969 61.111 0.00 0.00 0.00 6.53
3423 5526 2.807107 ATCTCCAATAGCCGCGCCA 61.807 57.895 0.00 0.00 0.00 5.69
3424 5527 2.324014 ATCTCCAATAGCCGCGCCAA 62.324 55.000 0.00 0.00 0.00 4.52
3425 5528 2.045829 TCCAATAGCCGCGCCAAA 60.046 55.556 0.00 0.00 0.00 3.28
3426 5529 1.653094 CTCCAATAGCCGCGCCAAAA 61.653 55.000 0.00 0.00 0.00 2.44
3427 5530 1.226660 CCAATAGCCGCGCCAAAAG 60.227 57.895 0.00 0.00 0.00 2.27
3428 5531 1.226660 CAATAGCCGCGCCAAAAGG 60.227 57.895 0.00 0.00 0.00 3.11
3445 5548 4.218478 GCGCGCGCTAAACCGAAT 62.218 61.111 44.38 0.00 38.26 3.34
3446 5549 2.398036 CGCGCGCTAAACCGAATT 59.602 55.556 30.48 0.00 0.00 2.17
3447 5550 1.225908 CGCGCGCTAAACCGAATTT 60.226 52.632 30.48 0.00 0.00 1.82
3448 5551 0.791610 CGCGCGCTAAACCGAATTTT 60.792 50.000 30.48 0.00 0.00 1.82
3449 5552 1.333115 GCGCGCTAAACCGAATTTTT 58.667 45.000 26.67 0.00 0.00 1.94
3463 5566 4.020378 TTTTTGCGAGCGCGGGAC 62.020 61.111 12.86 0.00 45.51 4.46
3495 5598 3.685435 CAGCGGTGGCAGGAAAAT 58.315 55.556 6.74 0.00 43.41 1.82
3496 5599 1.508088 CAGCGGTGGCAGGAAAATC 59.492 57.895 6.74 0.00 43.41 2.17
3497 5600 2.040544 AGCGGTGGCAGGAAAATCG 61.041 57.895 0.00 0.00 43.41 3.34
3498 5601 2.485122 CGGTGGCAGGAAAATCGC 59.515 61.111 0.00 0.00 0.00 4.58
3499 5602 2.485122 GGTGGCAGGAAAATCGCG 59.515 61.111 0.00 0.00 0.00 5.87
3500 5603 2.202479 GTGGCAGGAAAATCGCGC 60.202 61.111 0.00 0.00 0.00 6.86
3501 5604 3.798650 TGGCAGGAAAATCGCGCG 61.799 61.111 26.76 26.76 0.00 6.86
3538 5641 2.822701 GCGGGAAAAGGCGGTAGG 60.823 66.667 0.00 0.00 0.00 3.18
3539 5642 2.666812 CGGGAAAAGGCGGTAGGT 59.333 61.111 0.00 0.00 0.00 3.08
3540 5643 1.002990 CGGGAAAAGGCGGTAGGTT 60.003 57.895 0.00 0.00 0.00 3.50
3541 5644 1.303091 CGGGAAAAGGCGGTAGGTTG 61.303 60.000 0.00 0.00 0.00 3.77
3542 5645 1.592400 GGGAAAAGGCGGTAGGTTGC 61.592 60.000 0.00 0.00 0.00 4.17
3543 5646 1.500396 GAAAAGGCGGTAGGTTGCG 59.500 57.895 0.00 0.00 0.00 4.85
3544 5647 2.523184 GAAAAGGCGGTAGGTTGCGC 62.523 60.000 0.00 0.00 0.00 6.09
3549 5652 3.419759 CGGTAGGTTGCGCGCTTT 61.420 61.111 33.29 16.65 0.00 3.51
3550 5653 2.951458 GGTAGGTTGCGCGCTTTT 59.049 55.556 33.29 17.01 0.00 2.27
3551 5654 1.284715 GGTAGGTTGCGCGCTTTTT 59.715 52.632 33.29 17.38 0.00 1.94
3567 5670 1.439644 TTTTTGGTGCACCGCTTCC 59.560 52.632 30.07 6.61 39.43 3.46
3568 5671 2.343163 TTTTTGGTGCACCGCTTCCG 62.343 55.000 30.07 0.00 39.43 4.30
3579 5682 4.657824 GCTTCCGGCGCGCCTATA 62.658 66.667 43.60 27.59 0.00 1.31
3580 5683 2.028484 CTTCCGGCGCGCCTATAA 59.972 61.111 43.60 31.62 0.00 0.98
3581 5684 1.593209 CTTCCGGCGCGCCTATAAA 60.593 57.895 43.60 29.31 0.00 1.40
3582 5685 1.153409 TTCCGGCGCGCCTATAAAA 60.153 52.632 43.60 27.07 0.00 1.52
3583 5686 0.533308 TTCCGGCGCGCCTATAAAAT 60.533 50.000 43.60 0.00 0.00 1.82
3584 5687 1.206578 CCGGCGCGCCTATAAAATG 59.793 57.895 43.60 26.86 0.00 2.32
3585 5688 1.440353 CGGCGCGCCTATAAAATGC 60.440 57.895 43.60 17.10 0.00 3.56
3590 5693 4.533566 GCCTATAAAATGCGGCGC 57.466 55.556 27.44 27.44 32.22 6.53
3591 5694 1.949257 GCCTATAAAATGCGGCGCT 59.051 52.632 33.26 15.39 32.22 5.92
3592 5695 0.110192 GCCTATAAAATGCGGCGCTC 60.110 55.000 33.26 5.35 32.22 5.03
3593 5696 0.163788 CCTATAAAATGCGGCGCTCG 59.836 55.000 33.26 10.91 42.76 5.03
3610 5713 3.573491 GCCACGCGCCTATTCCAC 61.573 66.667 5.73 0.00 0.00 4.02
3611 5714 2.125310 CCACGCGCCTATTCCACA 60.125 61.111 5.73 0.00 0.00 4.17
3612 5715 2.461110 CCACGCGCCTATTCCACAC 61.461 63.158 5.73 0.00 0.00 3.82
3613 5716 2.508439 ACGCGCCTATTCCACACG 60.508 61.111 5.73 0.00 0.00 4.49
3614 5717 3.925238 CGCGCCTATTCCACACGC 61.925 66.667 0.00 0.00 45.72 5.34
3615 5718 2.511600 GCGCCTATTCCACACGCT 60.512 61.111 0.00 0.00 45.71 5.07
3616 5719 2.106683 GCGCCTATTCCACACGCTT 61.107 57.895 0.00 0.00 45.71 4.68
3617 5720 2.006772 CGCCTATTCCACACGCTTC 58.993 57.895 0.00 0.00 0.00 3.86
3618 5721 0.460284 CGCCTATTCCACACGCTTCT 60.460 55.000 0.00 0.00 0.00 2.85
3619 5722 1.291132 GCCTATTCCACACGCTTCTC 58.709 55.000 0.00 0.00 0.00 2.87
3620 5723 1.134670 GCCTATTCCACACGCTTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
3621 5724 2.678190 GCCTATTCCACACGCTTCTCTT 60.678 50.000 0.00 0.00 0.00 2.85
3622 5725 3.190874 CCTATTCCACACGCTTCTCTTC 58.809 50.000 0.00 0.00 0.00 2.87
3623 5726 2.100605 ATTCCACACGCTTCTCTTCC 57.899 50.000 0.00 0.00 0.00 3.46
3624 5727 1.048601 TTCCACACGCTTCTCTTCCT 58.951 50.000 0.00 0.00 0.00 3.36
3625 5728 0.603569 TCCACACGCTTCTCTTCCTC 59.396 55.000 0.00 0.00 0.00 3.71
3626 5729 0.605589 CCACACGCTTCTCTTCCTCT 59.394 55.000 0.00 0.00 0.00 3.69
3627 5730 1.001406 CCACACGCTTCTCTTCCTCTT 59.999 52.381 0.00 0.00 0.00 2.85
3628 5731 2.333014 CACACGCTTCTCTTCCTCTTC 58.667 52.381 0.00 0.00 0.00 2.87
3629 5732 1.273886 ACACGCTTCTCTTCCTCTTCC 59.726 52.381 0.00 0.00 0.00 3.46
3630 5733 0.528470 ACGCTTCTCTTCCTCTTCCG 59.472 55.000 0.00 0.00 0.00 4.30
3631 5734 0.804156 CGCTTCTCTTCCTCTTCCGC 60.804 60.000 0.00 0.00 0.00 5.54
3632 5735 0.534873 GCTTCTCTTCCTCTTCCGCT 59.465 55.000 0.00 0.00 0.00 5.52
3633 5736 1.738700 GCTTCTCTTCCTCTTCCGCTG 60.739 57.143 0.00 0.00 0.00 5.18
3634 5737 0.247736 TTCTCTTCCTCTTCCGCTGC 59.752 55.000 0.00 0.00 0.00 5.25
3635 5738 1.153469 CTCTTCCTCTTCCGCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
3636 5739 1.892819 CTCTTCCTCTTCCGCTGCCA 61.893 60.000 0.00 0.00 0.00 4.92
3637 5740 1.743252 CTTCCTCTTCCGCTGCCAC 60.743 63.158 0.00 0.00 0.00 5.01
3638 5741 3.589654 TTCCTCTTCCGCTGCCACG 62.590 63.158 0.00 0.00 0.00 4.94
3658 5761 4.821589 CGCCTCCACCGCTTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
3659 5762 4.821589 GCCTCCACCGCTTCCTCG 62.822 72.222 0.00 0.00 0.00 4.63
3666 5769 2.358737 CCGCTTCCTCGGTTGCTT 60.359 61.111 0.00 0.00 44.18 3.91
3667 5770 2.391389 CCGCTTCCTCGGTTGCTTC 61.391 63.158 0.00 0.00 44.18 3.86
3668 5771 2.391389 CGCTTCCTCGGTTGCTTCC 61.391 63.158 0.00 0.00 0.00 3.46
3676 5779 4.043200 GGTTGCTTCCGCTGCCAC 62.043 66.667 0.00 0.00 36.97 5.01
3677 5780 4.389576 GTTGCTTCCGCTGCCACG 62.390 66.667 0.00 0.00 36.97 4.94
3773 5876 3.708544 CCCCAACGGCGGGTTCTA 61.709 66.667 13.24 0.00 45.80 2.10
3774 5877 2.435410 CCCAACGGCGGGTTCTAC 60.435 66.667 13.24 0.00 41.83 2.59
3775 5878 2.660802 CCAACGGCGGGTTCTACT 59.339 61.111 13.24 0.00 36.49 2.57
3776 5879 1.447314 CCAACGGCGGGTTCTACTC 60.447 63.158 13.24 0.00 36.49 2.59
3777 5880 1.447314 CAACGGCGGGTTCTACTCC 60.447 63.158 13.24 0.00 36.49 3.85
3794 5897 3.214123 CGAGATACGGTCCGGCCA 61.214 66.667 17.28 0.05 38.46 5.36
3795 5898 2.777972 CGAGATACGGTCCGGCCAA 61.778 63.158 17.28 0.00 38.46 4.52
3796 5899 1.227176 GAGATACGGTCCGGCCAAC 60.227 63.158 17.28 0.00 36.97 3.77
3797 5900 1.673808 GAGATACGGTCCGGCCAACT 61.674 60.000 17.28 7.28 36.97 3.16
3798 5901 1.227176 GATACGGTCCGGCCAACTC 60.227 63.158 17.28 0.00 36.97 3.01
3799 5902 2.639883 GATACGGTCCGGCCAACTCC 62.640 65.000 17.28 0.00 36.97 3.85
3819 5922 4.821589 CTCGGCCTCGGCACCTTC 62.822 72.222 10.51 0.00 44.11 3.46
3826 5929 3.744719 TCGGCACCTTCGAGACGG 61.745 66.667 0.00 0.00 32.51 4.79
3830 5933 4.717629 CACCTTCGAGACGGCGCA 62.718 66.667 10.83 0.00 0.00 6.09
3831 5934 4.719369 ACCTTCGAGACGGCGCAC 62.719 66.667 10.83 0.76 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.507992 GCTGTCGAGCTGCATCGT 60.508 61.111 16.79 0.00 42.52 3.73
141 142 2.305927 GGGAGAAGGAGGATGACAACAA 59.694 50.000 0.00 0.00 0.00 2.83
395 396 2.293677 TGAGCGCGTTTATGACAGAT 57.706 45.000 8.43 0.00 0.00 2.90
422 423 2.625737 AGACACTGATCAGCGGATTTG 58.374 47.619 22.83 14.11 32.67 2.32
468 469 4.432712 ACATTTTTGTTGCAGAAGACACC 58.567 39.130 0.00 0.00 0.00 4.16
578 579 6.404734 GGACACTTCTTCAGCTTTGAGAAAAA 60.405 38.462 5.11 0.00 0.00 1.94
579 580 5.066505 GGACACTTCTTCAGCTTTGAGAAAA 59.933 40.000 5.11 0.00 0.00 2.29
675 1404 1.104577 GGCAGGTCCGTTTGTTTGGA 61.105 55.000 0.00 0.00 0.00 3.53
716 1445 3.011032 ACTCCAGGCTTCTTGATTGGAAT 59.989 43.478 0.00 0.00 37.48 3.01
717 1446 2.376518 ACTCCAGGCTTCTTGATTGGAA 59.623 45.455 0.00 0.00 37.48 3.53
718 1447 1.988107 ACTCCAGGCTTCTTGATTGGA 59.012 47.619 0.00 0.00 36.55 3.53
719 1448 2.363683 GACTCCAGGCTTCTTGATTGG 58.636 52.381 0.00 0.00 0.00 3.16
720 1449 2.363683 GGACTCCAGGCTTCTTGATTG 58.636 52.381 0.00 0.00 0.00 2.67
721 1450 1.283321 GGGACTCCAGGCTTCTTGATT 59.717 52.381 0.00 0.00 0.00 2.57
722 1451 0.915364 GGGACTCCAGGCTTCTTGAT 59.085 55.000 0.00 0.00 0.00 2.57
927 1661 3.618997 GCAACTGGGTCGAAATTAGGAGA 60.619 47.826 0.00 0.00 0.00 3.71
1052 1797 4.742201 CGCGGCTAGCTGGTGTGT 62.742 66.667 24.73 0.00 45.59 3.72
1059 1804 4.473520 AATGGTGCGCGGCTAGCT 62.474 61.111 15.72 0.00 45.59 3.32
1060 1805 4.241999 CAATGGTGCGCGGCTAGC 62.242 66.667 8.83 6.04 43.95 3.42
1061 1806 1.835483 GATCAATGGTGCGCGGCTAG 61.835 60.000 8.83 0.00 0.00 3.42
1062 1807 1.887242 GATCAATGGTGCGCGGCTA 60.887 57.895 8.83 0.00 0.00 3.93
1063 1808 3.204827 GATCAATGGTGCGCGGCT 61.205 61.111 8.83 0.00 0.00 5.52
1064 1809 3.507924 TGATCAATGGTGCGCGGC 61.508 61.111 8.83 0.00 0.00 6.53
1067 1812 0.099436 GAAGGTGATCAATGGTGCGC 59.901 55.000 0.00 0.00 0.00 6.09
1216 1971 2.992114 AGACGCTTCAGCTCCCGT 60.992 61.111 0.00 0.00 39.32 5.28
1267 2022 0.617535 ACTGGATGACGGGGATGTGA 60.618 55.000 0.00 0.00 0.00 3.58
1471 2226 4.069232 TCGCCGAAGTGCTCCAGG 62.069 66.667 0.00 0.00 0.00 4.45
1607 2362 2.969443 ACATGCGTTAGTGTTTCAGC 57.031 45.000 0.00 0.00 0.00 4.26
1654 2409 3.534056 GGTCAGCCATGCCCATGC 61.534 66.667 2.75 0.00 37.49 4.06
1655 2410 3.214123 CGGTCAGCCATGCCCATG 61.214 66.667 1.28 1.28 38.51 3.66
1656 2411 3.286694 AACGGTCAGCCATGCCCAT 62.287 57.895 0.00 0.00 34.09 4.00
1657 2412 3.965258 AACGGTCAGCCATGCCCA 61.965 61.111 0.00 0.00 34.09 5.36
1658 2413 3.443045 CAACGGTCAGCCATGCCC 61.443 66.667 0.00 0.00 34.09 5.36
1659 2414 2.200170 GAACAACGGTCAGCCATGCC 62.200 60.000 0.00 0.00 34.09 4.40
2162 2920 2.768492 CGCGTTCCCGTAGTAGCCT 61.768 63.158 0.00 0.00 36.15 4.58
2714 4792 9.933723 TTCTATTGTAGTTACTAACAACTTCCC 57.066 33.333 8.67 0.00 39.45 3.97
2730 4818 8.070171 CCACTGCGGATTAAATTTCTATTGTAG 58.930 37.037 0.00 0.00 36.56 2.74
2735 4823 5.299279 CACCCACTGCGGATTAAATTTCTAT 59.701 40.000 0.00 0.00 36.56 1.98
2861 4954 8.729756 TGGAATTATTCAAACAGACACATACAG 58.270 33.333 7.29 0.00 0.00 2.74
3104 5207 1.459592 GGAGGAAACGTTGATGTCACG 59.540 52.381 0.00 0.00 0.00 4.35
3118 5221 0.473117 AAACCCAGGACGAGGAGGAA 60.473 55.000 0.00 0.00 0.00 3.36
3168 5271 9.354673 ACTTGGTGAAATATTTTCTCTCTCAAA 57.645 29.630 1.43 0.00 0.00 2.69
3169 5272 8.924511 ACTTGGTGAAATATTTTCTCTCTCAA 57.075 30.769 1.43 1.39 0.00 3.02
3170 5273 8.924511 AACTTGGTGAAATATTTTCTCTCTCA 57.075 30.769 1.43 0.00 0.00 3.27
3216 5319 8.870160 TTAGTTTCCAGAACATTTGAACAATG 57.130 30.769 0.00 0.00 0.00 2.82
3217 5320 9.883142 TTTTAGTTTCCAGAACATTTGAACAAT 57.117 25.926 0.00 0.00 0.00 2.71
3218 5321 9.145865 GTTTTAGTTTCCAGAACATTTGAACAA 57.854 29.630 0.00 0.00 0.00 2.83
3219 5322 8.527810 AGTTTTAGTTTCCAGAACATTTGAACA 58.472 29.630 0.00 0.00 0.00 3.18
3220 5323 8.926715 AGTTTTAGTTTCCAGAACATTTGAAC 57.073 30.769 0.00 0.00 0.00 3.18
3221 5324 8.194769 GGAGTTTTAGTTTCCAGAACATTTGAA 58.805 33.333 0.00 0.00 0.00 2.69
3222 5325 7.201875 GGGAGTTTTAGTTTCCAGAACATTTGA 60.202 37.037 0.00 0.00 32.50 2.69
3223 5326 6.923508 GGGAGTTTTAGTTTCCAGAACATTTG 59.076 38.462 0.00 0.00 32.50 2.32
3224 5327 6.238925 CGGGAGTTTTAGTTTCCAGAACATTT 60.239 38.462 0.00 0.00 32.50 2.32
3225 5328 5.240844 CGGGAGTTTTAGTTTCCAGAACATT 59.759 40.000 0.00 0.00 32.50 2.71
3226 5329 4.760204 CGGGAGTTTTAGTTTCCAGAACAT 59.240 41.667 0.00 0.00 32.50 2.71
3227 5330 4.131596 CGGGAGTTTTAGTTTCCAGAACA 58.868 43.478 0.00 0.00 32.50 3.18
3228 5331 3.058432 GCGGGAGTTTTAGTTTCCAGAAC 60.058 47.826 0.00 0.00 32.50 3.01
3229 5332 3.143728 GCGGGAGTTTTAGTTTCCAGAA 58.856 45.455 0.00 0.00 32.50 3.02
3230 5333 2.105134 TGCGGGAGTTTTAGTTTCCAGA 59.895 45.455 0.00 0.00 32.50 3.86
3231 5334 2.500229 TGCGGGAGTTTTAGTTTCCAG 58.500 47.619 0.00 0.00 32.50 3.86
3232 5335 2.642154 TGCGGGAGTTTTAGTTTCCA 57.358 45.000 0.00 0.00 32.50 3.53
3233 5336 5.632244 TTATTGCGGGAGTTTTAGTTTCC 57.368 39.130 0.00 0.00 0.00 3.13
3234 5337 9.285770 CTAAATTATTGCGGGAGTTTTAGTTTC 57.714 33.333 0.00 0.00 0.00 2.78
3235 5338 7.758076 GCTAAATTATTGCGGGAGTTTTAGTTT 59.242 33.333 0.00 0.00 31.22 2.66
3236 5339 7.255569 GCTAAATTATTGCGGGAGTTTTAGTT 58.744 34.615 0.00 0.00 31.22 2.24
3237 5340 6.183360 GGCTAAATTATTGCGGGAGTTTTAGT 60.183 38.462 0.00 0.00 31.22 2.24
3238 5341 6.183360 TGGCTAAATTATTGCGGGAGTTTTAG 60.183 38.462 0.00 0.00 0.00 1.85
3239 5342 5.652891 TGGCTAAATTATTGCGGGAGTTTTA 59.347 36.000 0.00 0.00 0.00 1.52
3240 5343 4.464597 TGGCTAAATTATTGCGGGAGTTTT 59.535 37.500 0.00 0.00 0.00 2.43
3241 5344 4.020543 TGGCTAAATTATTGCGGGAGTTT 58.979 39.130 0.00 0.00 0.00 2.66
3242 5345 3.626930 TGGCTAAATTATTGCGGGAGTT 58.373 40.909 0.00 0.00 0.00 3.01
3243 5346 3.290948 TGGCTAAATTATTGCGGGAGT 57.709 42.857 0.00 0.00 0.00 3.85
3244 5347 4.097892 ACTTTGGCTAAATTATTGCGGGAG 59.902 41.667 0.00 0.00 0.00 4.30
3245 5348 4.020543 ACTTTGGCTAAATTATTGCGGGA 58.979 39.130 0.00 0.00 0.00 5.14
3246 5349 4.359706 GACTTTGGCTAAATTATTGCGGG 58.640 43.478 0.00 0.00 0.00 6.13
3247 5350 4.359706 GGACTTTGGCTAAATTATTGCGG 58.640 43.478 0.00 0.00 0.00 5.69
3248 5351 4.142271 TGGGACTTTGGCTAAATTATTGCG 60.142 41.667 0.00 0.00 0.00 4.85
3249 5352 5.337578 TGGGACTTTGGCTAAATTATTGC 57.662 39.130 0.00 0.00 0.00 3.56
3250 5353 5.351458 GCTGGGACTTTGGCTAAATTATTG 58.649 41.667 0.00 0.00 0.00 1.90
3251 5354 4.405680 GGCTGGGACTTTGGCTAAATTATT 59.594 41.667 0.00 0.00 0.00 1.40
3252 5355 3.960755 GGCTGGGACTTTGGCTAAATTAT 59.039 43.478 0.00 0.00 0.00 1.28
3253 5356 3.361786 GGCTGGGACTTTGGCTAAATTA 58.638 45.455 0.00 0.00 0.00 1.40
3254 5357 2.179427 GGCTGGGACTTTGGCTAAATT 58.821 47.619 0.00 0.00 0.00 1.82
3255 5358 1.619704 GGGCTGGGACTTTGGCTAAAT 60.620 52.381 0.00 0.00 0.00 1.40
3256 5359 0.251608 GGGCTGGGACTTTGGCTAAA 60.252 55.000 0.00 0.00 0.00 1.85
3257 5360 1.382629 GGGCTGGGACTTTGGCTAA 59.617 57.895 0.00 0.00 0.00 3.09
3258 5361 1.214305 ATGGGCTGGGACTTTGGCTA 61.214 55.000 0.00 0.00 0.00 3.93
3259 5362 2.097978 AATGGGCTGGGACTTTGGCT 62.098 55.000 0.00 0.00 0.00 4.75
3260 5363 1.607801 GAATGGGCTGGGACTTTGGC 61.608 60.000 0.00 0.00 0.00 4.52
3261 5364 0.972471 GGAATGGGCTGGGACTTTGG 60.972 60.000 0.00 0.00 0.00 3.28
3262 5365 0.040204 AGGAATGGGCTGGGACTTTG 59.960 55.000 0.00 0.00 0.00 2.77
3263 5366 0.040204 CAGGAATGGGCTGGGACTTT 59.960 55.000 0.00 0.00 0.00 2.66
3264 5367 1.142688 ACAGGAATGGGCTGGGACTT 61.143 55.000 0.00 0.00 0.00 3.01
3265 5368 0.253160 TACAGGAATGGGCTGGGACT 60.253 55.000 0.00 0.00 0.00 3.85
3266 5369 0.181350 CTACAGGAATGGGCTGGGAC 59.819 60.000 0.00 0.00 0.00 4.46
3267 5370 1.635817 GCTACAGGAATGGGCTGGGA 61.636 60.000 0.00 0.00 0.00 4.37
3268 5371 1.152881 GCTACAGGAATGGGCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
3269 5372 1.071385 CTAGCTACAGGAATGGGCTGG 59.929 57.143 0.00 0.00 34.88 4.85
3270 5373 2.042464 TCTAGCTACAGGAATGGGCTG 58.958 52.381 0.00 0.00 34.88 4.85
3271 5374 2.478872 TCTAGCTACAGGAATGGGCT 57.521 50.000 0.00 0.00 37.08 5.19
3272 5375 2.873649 GCATCTAGCTACAGGAATGGGC 60.874 54.545 0.00 0.00 41.15 5.36
3273 5376 3.051081 GCATCTAGCTACAGGAATGGG 57.949 52.381 0.00 0.00 41.15 4.00
3286 5389 5.963594 TGATATTGAGCTAGCAGCATCTAG 58.036 41.667 18.83 7.63 45.56 2.43
3287 5390 5.105432 CCTGATATTGAGCTAGCAGCATCTA 60.105 44.000 18.83 9.53 45.56 1.98
3288 5391 4.322877 CCTGATATTGAGCTAGCAGCATCT 60.323 45.833 18.83 7.75 45.56 2.90
3289 5392 3.933955 CCTGATATTGAGCTAGCAGCATC 59.066 47.826 18.83 11.80 45.56 3.91
3290 5393 3.869140 GCCTGATATTGAGCTAGCAGCAT 60.869 47.826 18.83 7.60 45.56 3.79
3291 5394 2.549563 GCCTGATATTGAGCTAGCAGCA 60.550 50.000 18.83 11.89 45.56 4.41
3292 5395 2.075338 GCCTGATATTGAGCTAGCAGC 58.925 52.381 18.83 9.13 42.84 5.25
3293 5396 2.038164 TGGCCTGATATTGAGCTAGCAG 59.962 50.000 18.83 2.26 35.41 4.24
3294 5397 2.038164 CTGGCCTGATATTGAGCTAGCA 59.962 50.000 18.83 0.00 0.00 3.49
3295 5398 2.301296 TCTGGCCTGATATTGAGCTAGC 59.699 50.000 6.62 6.62 34.20 3.42
3296 5399 4.613925 TTCTGGCCTGATATTGAGCTAG 57.386 45.455 13.72 0.00 35.38 3.42
3297 5400 4.263199 CCATTCTGGCCTGATATTGAGCTA 60.263 45.833 13.72 0.00 0.00 3.32
3298 5401 3.498121 CCATTCTGGCCTGATATTGAGCT 60.498 47.826 13.72 0.00 0.00 4.09
3299 5402 2.818432 CCATTCTGGCCTGATATTGAGC 59.182 50.000 13.72 0.00 0.00 4.26
3300 5403 4.070716 GTCCATTCTGGCCTGATATTGAG 58.929 47.826 13.72 6.54 37.47 3.02
3301 5404 3.181440 GGTCCATTCTGGCCTGATATTGA 60.181 47.826 13.72 8.38 37.47 2.57
3302 5405 3.152341 GGTCCATTCTGGCCTGATATTG 58.848 50.000 13.72 11.10 37.47 1.90
3303 5406 3.059097 AGGTCCATTCTGGCCTGATATT 58.941 45.455 13.72 0.00 40.75 1.28
3304 5407 2.641815 GAGGTCCATTCTGGCCTGATAT 59.358 50.000 13.72 7.24 41.79 1.63
3305 5408 2.050144 GAGGTCCATTCTGGCCTGATA 58.950 52.381 13.72 5.18 41.79 2.15
3306 5409 0.842635 GAGGTCCATTCTGGCCTGAT 59.157 55.000 13.72 1.16 41.79 2.90
3307 5410 0.252881 AGAGGTCCATTCTGGCCTGA 60.253 55.000 8.48 8.48 41.79 3.86
3308 5411 1.415659 CTAGAGGTCCATTCTGGCCTG 59.584 57.143 3.32 2.92 41.79 4.85
3309 5412 1.292242 TCTAGAGGTCCATTCTGGCCT 59.708 52.381 3.32 8.33 43.50 5.19
3310 5413 1.794714 TCTAGAGGTCCATTCTGGCC 58.205 55.000 0.00 0.00 37.47 5.36
3311 5414 5.753721 ATATTCTAGAGGTCCATTCTGGC 57.246 43.478 0.00 0.00 37.47 4.85
3312 5415 7.877097 CAGAAATATTCTAGAGGTCCATTCTGG 59.123 40.741 17.99 0.00 38.11 3.86
3313 5416 7.877097 CCAGAAATATTCTAGAGGTCCATTCTG 59.123 40.741 18.42 18.42 38.11 3.02
3314 5417 7.474079 GCCAGAAATATTCTAGAGGTCCATTCT 60.474 40.741 0.00 0.00 38.11 2.40
3315 5418 6.652900 GCCAGAAATATTCTAGAGGTCCATTC 59.347 42.308 0.00 0.00 38.11 2.67
3316 5419 6.101734 TGCCAGAAATATTCTAGAGGTCCATT 59.898 38.462 0.00 0.00 38.11 3.16
3317 5420 5.608437 TGCCAGAAATATTCTAGAGGTCCAT 59.392 40.000 0.00 0.00 38.11 3.41
3318 5421 4.968719 TGCCAGAAATATTCTAGAGGTCCA 59.031 41.667 0.00 0.00 38.11 4.02
3319 5422 5.552870 TGCCAGAAATATTCTAGAGGTCC 57.447 43.478 0.00 0.00 38.11 4.46
3320 5423 7.865706 TTTTGCCAGAAATATTCTAGAGGTC 57.134 36.000 0.00 0.00 38.11 3.85
3321 5424 7.503902 GGATTTTGCCAGAAATATTCTAGAGGT 59.496 37.037 0.00 0.00 38.11 3.85
3322 5425 7.503566 TGGATTTTGCCAGAAATATTCTAGAGG 59.496 37.037 0.00 0.00 38.11 3.69
3323 5426 8.455903 TGGATTTTGCCAGAAATATTCTAGAG 57.544 34.615 0.00 0.00 38.11 2.43
3337 5440 1.573829 GCGACGACTGGATTTTGCCA 61.574 55.000 0.00 0.00 36.30 4.92
3338 5441 1.134694 GCGACGACTGGATTTTGCC 59.865 57.895 0.00 0.00 0.00 4.52
3339 5442 1.134694 GGCGACGACTGGATTTTGC 59.865 57.895 0.00 0.00 0.00 3.68
3340 5443 0.673644 AGGGCGACGACTGGATTTTG 60.674 55.000 0.00 0.00 0.00 2.44
3341 5444 0.899720 TAGGGCGACGACTGGATTTT 59.100 50.000 0.00 0.00 0.00 1.82
3342 5445 1.068741 GATAGGGCGACGACTGGATTT 59.931 52.381 0.00 0.00 0.00 2.17
3343 5446 0.674534 GATAGGGCGACGACTGGATT 59.325 55.000 0.00 0.00 0.00 3.01
3344 5447 0.178987 AGATAGGGCGACGACTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
3345 5448 1.101635 CAGATAGGGCGACGACTGGA 61.102 60.000 0.00 0.00 0.00 3.86
3346 5449 1.360551 CAGATAGGGCGACGACTGG 59.639 63.158 0.00 0.00 0.00 4.00
3347 5450 0.029567 GACAGATAGGGCGACGACTG 59.970 60.000 0.00 0.00 0.00 3.51
3348 5451 1.102222 GGACAGATAGGGCGACGACT 61.102 60.000 0.00 0.00 0.00 4.18
3349 5452 1.359475 GGACAGATAGGGCGACGAC 59.641 63.158 0.00 0.00 0.00 4.34
3350 5453 2.184830 CGGACAGATAGGGCGACGA 61.185 63.158 0.00 0.00 0.00 4.20
3351 5454 2.331805 CGGACAGATAGGGCGACG 59.668 66.667 0.00 0.00 0.00 5.12
3352 5455 1.102222 AGACGGACAGATAGGGCGAC 61.102 60.000 0.00 0.00 0.00 5.19
3353 5456 0.395311 AAGACGGACAGATAGGGCGA 60.395 55.000 0.00 0.00 0.00 5.54
3354 5457 0.460311 AAAGACGGACAGATAGGGCG 59.540 55.000 0.00 0.00 0.00 6.13
3355 5458 1.757699 AGAAAGACGGACAGATAGGGC 59.242 52.381 0.00 0.00 0.00 5.19
3356 5459 4.021894 CCATAGAAAGACGGACAGATAGGG 60.022 50.000 0.00 0.00 0.00 3.53
3357 5460 4.827835 TCCATAGAAAGACGGACAGATAGG 59.172 45.833 0.00 0.00 0.00 2.57
3358 5461 5.533154 ACTCCATAGAAAGACGGACAGATAG 59.467 44.000 0.00 0.00 0.00 2.08
3359 5462 5.299531 CACTCCATAGAAAGACGGACAGATA 59.700 44.000 0.00 0.00 0.00 1.98
3360 5463 4.098654 CACTCCATAGAAAGACGGACAGAT 59.901 45.833 0.00 0.00 0.00 2.90
3361 5464 3.444034 CACTCCATAGAAAGACGGACAGA 59.556 47.826 0.00 0.00 0.00 3.41
3362 5465 3.775202 CACTCCATAGAAAGACGGACAG 58.225 50.000 0.00 0.00 0.00 3.51
3363 5466 2.094182 GCACTCCATAGAAAGACGGACA 60.094 50.000 0.00 0.00 0.00 4.02
3364 5467 2.166664 AGCACTCCATAGAAAGACGGAC 59.833 50.000 0.00 0.00 0.00 4.79
3365 5468 2.427453 GAGCACTCCATAGAAAGACGGA 59.573 50.000 0.00 0.00 0.00 4.69
3366 5469 2.796383 CGAGCACTCCATAGAAAGACGG 60.796 54.545 0.00 0.00 0.00 4.79
3367 5470 2.159366 ACGAGCACTCCATAGAAAGACG 60.159 50.000 0.00 0.00 0.00 4.18
3368 5471 3.512033 ACGAGCACTCCATAGAAAGAC 57.488 47.619 0.00 0.00 0.00 3.01
3369 5472 3.119101 GGAACGAGCACTCCATAGAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
3370 5473 3.190874 GGAACGAGCACTCCATAGAAAG 58.809 50.000 0.00 0.00 0.00 2.62
3371 5474 3.247006 GGAACGAGCACTCCATAGAAA 57.753 47.619 0.00 0.00 0.00 2.52
3372 5475 2.961526 GGAACGAGCACTCCATAGAA 57.038 50.000 0.00 0.00 0.00 2.10
3387 5490 0.743345 ATGTTCTTAGGGCGCGGAAC 60.743 55.000 20.90 20.90 38.64 3.62
3388 5491 0.461339 GATGTTCTTAGGGCGCGGAA 60.461 55.000 8.83 0.00 0.00 4.30
3389 5492 1.143183 GATGTTCTTAGGGCGCGGA 59.857 57.895 8.83 0.00 0.00 5.54
3390 5493 0.876342 GAGATGTTCTTAGGGCGCGG 60.876 60.000 8.83 0.00 0.00 6.46
3391 5494 0.876342 GGAGATGTTCTTAGGGCGCG 60.876 60.000 0.00 0.00 0.00 6.86
3392 5495 0.178068 TGGAGATGTTCTTAGGGCGC 59.822 55.000 0.00 0.00 0.00 6.53
3393 5496 2.691409 TTGGAGATGTTCTTAGGGCG 57.309 50.000 0.00 0.00 0.00 6.13
3394 5497 4.068599 GCTATTGGAGATGTTCTTAGGGC 58.931 47.826 0.00 0.00 0.00 5.19
3395 5498 4.646572 GGCTATTGGAGATGTTCTTAGGG 58.353 47.826 0.00 0.00 0.00 3.53
3396 5499 4.310769 CGGCTATTGGAGATGTTCTTAGG 58.689 47.826 0.00 0.00 0.00 2.69
3397 5500 3.743396 GCGGCTATTGGAGATGTTCTTAG 59.257 47.826 0.00 0.00 0.00 2.18
3398 5501 3.728845 GCGGCTATTGGAGATGTTCTTA 58.271 45.455 0.00 0.00 0.00 2.10
3399 5502 2.565841 GCGGCTATTGGAGATGTTCTT 58.434 47.619 0.00 0.00 0.00 2.52
3400 5503 1.539065 CGCGGCTATTGGAGATGTTCT 60.539 52.381 0.00 0.00 0.00 3.01
3401 5504 0.861837 CGCGGCTATTGGAGATGTTC 59.138 55.000 0.00 0.00 0.00 3.18
3402 5505 1.160329 GCGCGGCTATTGGAGATGTT 61.160 55.000 8.83 0.00 0.00 2.71
3403 5506 1.595382 GCGCGGCTATTGGAGATGT 60.595 57.895 8.83 0.00 0.00 3.06
3404 5507 2.320587 GGCGCGGCTATTGGAGATG 61.321 63.158 27.05 0.00 0.00 2.90
3405 5508 2.031163 GGCGCGGCTATTGGAGAT 59.969 61.111 27.05 0.00 0.00 2.75
3406 5509 2.529454 TTTGGCGCGGCTATTGGAGA 62.529 55.000 33.23 7.69 0.00 3.71
3407 5510 1.653094 TTTTGGCGCGGCTATTGGAG 61.653 55.000 33.23 0.00 0.00 3.86
3408 5511 1.653094 CTTTTGGCGCGGCTATTGGA 61.653 55.000 33.23 9.38 0.00 3.53
3409 5512 1.226660 CTTTTGGCGCGGCTATTGG 60.227 57.895 33.23 15.31 0.00 3.16
3410 5513 1.226660 CCTTTTGGCGCGGCTATTG 60.227 57.895 33.23 19.53 0.00 1.90
3411 5514 3.196648 CCTTTTGGCGCGGCTATT 58.803 55.556 33.23 0.00 0.00 1.73
3421 5524 3.602924 TTTAGCGCGCGCCTTTTGG 62.603 57.895 46.98 11.67 43.17 3.28
3422 5525 2.127042 TTTAGCGCGCGCCTTTTG 60.127 55.556 46.98 12.50 43.17 2.44
3423 5526 2.127003 GTTTAGCGCGCGCCTTTT 60.127 55.556 46.98 32.65 43.17 2.27
3424 5527 4.097863 GGTTTAGCGCGCGCCTTT 62.098 61.111 46.98 33.03 43.17 3.11
3428 5531 3.711997 AATTCGGTTTAGCGCGCGC 62.712 57.895 45.10 45.10 42.33 6.86
3429 5532 0.791610 AAAATTCGGTTTAGCGCGCG 60.792 50.000 28.44 28.44 0.00 6.86
3430 5533 1.333115 AAAAATTCGGTTTAGCGCGC 58.667 45.000 26.66 26.66 0.00 6.86
3446 5549 4.020378 GTCCCGCGCTCGCAAAAA 62.020 61.111 14.80 0.00 42.06 1.94
3478 5581 1.508088 GATTTTCCTGCCACCGCTG 59.492 57.895 0.00 0.00 35.36 5.18
3479 5582 2.040544 CGATTTTCCTGCCACCGCT 61.041 57.895 0.00 0.00 35.36 5.52
3480 5583 2.485122 CGATTTTCCTGCCACCGC 59.515 61.111 0.00 0.00 0.00 5.68
3481 5584 2.485122 GCGATTTTCCTGCCACCG 59.515 61.111 0.00 0.00 0.00 4.94
3482 5585 2.485122 CGCGATTTTCCTGCCACC 59.515 61.111 0.00 0.00 0.00 4.61
3483 5586 2.202479 GCGCGATTTTCCTGCCAC 60.202 61.111 12.10 0.00 0.00 5.01
3484 5587 3.798650 CGCGCGATTTTCCTGCCA 61.799 61.111 28.94 0.00 0.00 4.92
3521 5624 2.822701 CCTACCGCCTTTTCCCGC 60.823 66.667 0.00 0.00 0.00 6.13
3522 5625 1.002990 AACCTACCGCCTTTTCCCG 60.003 57.895 0.00 0.00 0.00 5.14
3523 5626 1.592400 GCAACCTACCGCCTTTTCCC 61.592 60.000 0.00 0.00 0.00 3.97
3524 5627 1.880894 GCAACCTACCGCCTTTTCC 59.119 57.895 0.00 0.00 0.00 3.13
3525 5628 1.500396 CGCAACCTACCGCCTTTTC 59.500 57.895 0.00 0.00 0.00 2.29
3526 5629 2.622962 GCGCAACCTACCGCCTTTT 61.623 57.895 0.30 0.00 44.10 2.27
3527 5630 3.053896 GCGCAACCTACCGCCTTT 61.054 61.111 0.30 0.00 44.10 3.11
3532 5635 2.452366 AAAAAGCGCGCAACCTACCG 62.452 55.000 35.10 0.00 0.00 4.02
3533 5636 1.284715 AAAAAGCGCGCAACCTACC 59.715 52.632 35.10 0.00 0.00 3.18
3534 5637 4.935630 AAAAAGCGCGCAACCTAC 57.064 50.000 35.10 0.72 0.00 3.18
3549 5652 1.439644 GGAAGCGGTGCACCAAAAA 59.560 52.632 34.16 0.00 35.14 1.94
3550 5653 2.840066 CGGAAGCGGTGCACCAAAA 61.840 57.895 34.16 0.00 35.14 2.44
3551 5654 3.283684 CGGAAGCGGTGCACCAAA 61.284 61.111 34.16 0.00 35.14 3.28
3562 5665 4.657824 TATAGGCGCGCCGGAAGC 62.658 66.667 41.70 19.59 41.95 3.86
3563 5666 1.155424 TTTTATAGGCGCGCCGGAAG 61.155 55.000 41.70 0.00 41.95 3.46
3564 5667 0.533308 ATTTTATAGGCGCGCCGGAA 60.533 50.000 41.70 32.10 41.95 4.30
3565 5668 1.070105 ATTTTATAGGCGCGCCGGA 59.930 52.632 41.70 33.78 41.95 5.14
3566 5669 1.206578 CATTTTATAGGCGCGCCGG 59.793 57.895 41.70 21.21 41.95 6.13
3567 5670 1.440353 GCATTTTATAGGCGCGCCG 60.440 57.895 41.70 26.59 41.95 6.46
3568 5671 1.440353 CGCATTTTATAGGCGCGCC 60.440 57.895 42.34 42.34 44.49 6.53
3569 5672 4.115287 CGCATTTTATAGGCGCGC 57.885 55.556 25.94 25.94 44.49 6.86
3573 5676 0.110192 GAGCGCCGCATTTTATAGGC 60.110 55.000 13.36 0.00 45.67 3.93
3574 5677 0.163788 CGAGCGCCGCATTTTATAGG 59.836 55.000 13.36 0.00 0.00 2.57
3575 5678 3.639222 CGAGCGCCGCATTTTATAG 57.361 52.632 13.36 0.00 0.00 1.31
3593 5696 3.573491 GTGGAATAGGCGCGTGGC 61.573 66.667 15.67 15.67 42.51 5.01
3594 5697 2.125310 TGTGGAATAGGCGCGTGG 60.125 61.111 13.84 0.00 0.00 4.94
3595 5698 2.798501 CGTGTGGAATAGGCGCGTG 61.799 63.158 13.84 0.00 0.00 5.34
3596 5699 2.508439 CGTGTGGAATAGGCGCGT 60.508 61.111 8.43 8.08 0.00 6.01
3597 5700 3.925238 GCGTGTGGAATAGGCGCG 61.925 66.667 0.00 0.00 38.75 6.86
3598 5701 2.036764 GAAGCGTGTGGAATAGGCGC 62.037 60.000 0.00 0.00 43.83 6.53
3599 5702 0.460284 AGAAGCGTGTGGAATAGGCG 60.460 55.000 0.00 0.00 43.83 5.52
3600 5703 1.134670 AGAGAAGCGTGTGGAATAGGC 60.135 52.381 0.00 0.00 39.22 3.93
3601 5704 2.969628 AGAGAAGCGTGTGGAATAGG 57.030 50.000 0.00 0.00 0.00 2.57
3602 5705 3.118956 AGGAAGAGAAGCGTGTGGAATAG 60.119 47.826 0.00 0.00 0.00 1.73
3603 5706 2.832129 AGGAAGAGAAGCGTGTGGAATA 59.168 45.455 0.00 0.00 0.00 1.75
3604 5707 1.625818 AGGAAGAGAAGCGTGTGGAAT 59.374 47.619 0.00 0.00 0.00 3.01
3605 5708 1.000955 GAGGAAGAGAAGCGTGTGGAA 59.999 52.381 0.00 0.00 0.00 3.53
3606 5709 0.603569 GAGGAAGAGAAGCGTGTGGA 59.396 55.000 0.00 0.00 0.00 4.02
3607 5710 0.605589 AGAGGAAGAGAAGCGTGTGG 59.394 55.000 0.00 0.00 0.00 4.17
3608 5711 2.333014 GAAGAGGAAGAGAAGCGTGTG 58.667 52.381 0.00 0.00 0.00 3.82
3609 5712 1.273886 GGAAGAGGAAGAGAAGCGTGT 59.726 52.381 0.00 0.00 0.00 4.49
3610 5713 1.734047 CGGAAGAGGAAGAGAAGCGTG 60.734 57.143 0.00 0.00 0.00 5.34
3611 5714 0.528470 CGGAAGAGGAAGAGAAGCGT 59.472 55.000 0.00 0.00 0.00 5.07
3612 5715 0.804156 GCGGAAGAGGAAGAGAAGCG 60.804 60.000 0.00 0.00 0.00 4.68
3613 5716 0.534873 AGCGGAAGAGGAAGAGAAGC 59.465 55.000 0.00 0.00 0.00 3.86
3614 5717 1.738700 GCAGCGGAAGAGGAAGAGAAG 60.739 57.143 0.00 0.00 0.00 2.85
3615 5718 0.247736 GCAGCGGAAGAGGAAGAGAA 59.752 55.000 0.00 0.00 0.00 2.87
3616 5719 1.608717 GGCAGCGGAAGAGGAAGAGA 61.609 60.000 0.00 0.00 0.00 3.10
3617 5720 1.153469 GGCAGCGGAAGAGGAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
3618 5721 1.913262 TGGCAGCGGAAGAGGAAGA 60.913 57.895 0.00 0.00 0.00 2.87
3619 5722 1.743252 GTGGCAGCGGAAGAGGAAG 60.743 63.158 0.00 0.00 0.00 3.46
3620 5723 2.347490 GTGGCAGCGGAAGAGGAA 59.653 61.111 0.00 0.00 0.00 3.36
3621 5724 4.069232 CGTGGCAGCGGAAGAGGA 62.069 66.667 0.00 0.00 0.00 3.71
3641 5744 4.821589 GAGGAAGCGGTGGAGGCG 62.822 72.222 0.00 0.00 35.00 5.52
3642 5745 4.821589 CGAGGAAGCGGTGGAGGC 62.822 72.222 0.00 0.00 0.00 4.70
3643 5746 4.148825 CCGAGGAAGCGGTGGAGG 62.149 72.222 0.00 0.00 46.07 4.30
3650 5753 2.391389 GGAAGCAACCGAGGAAGCG 61.391 63.158 0.00 0.00 0.00 4.68
3651 5754 3.579685 GGAAGCAACCGAGGAAGC 58.420 61.111 0.00 0.00 0.00 3.86
3758 5861 1.447314 GAGTAGAACCCGCCGTTGG 60.447 63.158 0.00 0.00 33.74 3.77
3759 5862 1.447314 GGAGTAGAACCCGCCGTTG 60.447 63.158 0.00 0.00 33.74 4.10
3760 5863 2.976356 GGAGTAGAACCCGCCGTT 59.024 61.111 0.00 0.00 37.41 4.44
3761 5864 3.446570 CGGAGTAGAACCCGCCGT 61.447 66.667 0.00 0.00 39.22 5.68
3762 5865 3.122250 CTCGGAGTAGAACCCGCCG 62.122 68.421 0.00 0.00 44.96 6.46
3763 5866 1.108132 ATCTCGGAGTAGAACCCGCC 61.108 60.000 4.69 0.00 44.96 6.13
3764 5867 1.266446 GTATCTCGGAGTAGAACCCGC 59.734 57.143 4.69 0.00 44.96 6.13
3765 5868 1.530293 CGTATCTCGGAGTAGAACCCG 59.470 57.143 4.69 0.00 46.57 5.28
3777 5880 2.777972 TTGGCCGGACCGTATCTCG 61.778 63.158 13.94 0.00 43.94 4.04
3778 5881 1.227176 GTTGGCCGGACCGTATCTC 60.227 63.158 13.94 0.00 43.94 2.75
3779 5882 1.673808 GAGTTGGCCGGACCGTATCT 61.674 60.000 13.94 3.73 43.94 1.98
3780 5883 1.227176 GAGTTGGCCGGACCGTATC 60.227 63.158 13.94 2.29 43.94 2.24
3781 5884 2.728435 GGAGTTGGCCGGACCGTAT 61.728 63.158 13.94 0.00 43.94 3.06
3782 5885 3.384532 GGAGTTGGCCGGACCGTA 61.385 66.667 13.94 0.00 43.94 4.02
3802 5905 4.821589 GAAGGTGCCGAGGCCGAG 62.822 72.222 12.05 0.00 41.09 4.63
3805 5908 4.821589 CTCGAAGGTGCCGAGGCC 62.822 72.222 12.05 0.00 46.85 5.19
3809 5912 3.744719 CCGTCTCGAAGGTGCCGA 61.745 66.667 0.00 0.00 34.61 5.54
3813 5916 4.717629 TGCGCCGTCTCGAAGGTG 62.718 66.667 4.18 7.88 42.19 4.00
3814 5917 4.719369 GTGCGCCGTCTCGAAGGT 62.719 66.667 4.18 0.00 32.29 3.50
3816 5919 4.753877 TCGTGCGCCGTCTCGAAG 62.754 66.667 16.00 0.00 37.94 3.79
3817 5920 4.753877 CTCGTGCGCCGTCTCGAA 62.754 66.667 16.00 0.00 37.94 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.