Multiple sequence alignment - TraesCS1D01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G164900 chr1D 100.000 3492 0 0 1 3492 235987969 235984478 0.000000e+00 6449.0
1 TraesCS1D01G164900 chr1D 95.823 2083 57 16 496 2563 236094036 236091969 0.000000e+00 3338.0
2 TraesCS1D01G164900 chr1D 82.500 360 51 10 3 355 479536311 479536665 4.380000e-79 305.0
3 TraesCS1D01G164900 chr1D 83.489 321 50 3 4 322 222898395 222898714 2.640000e-76 296.0
4 TraesCS1D01G164900 chr1D 82.249 338 55 5 3 337 25234947 25234612 1.590000e-73 287.0
5 TraesCS1D01G164900 chr1D 80.473 338 62 4 3 338 40862907 40863242 4.470000e-64 255.0
6 TraesCS1D01G164900 chr1D 80.539 334 60 5 38 368 407782972 407782641 5.790000e-63 252.0
7 TraesCS1D01G164900 chr1B 96.278 2069 56 9 496 2563 341380667 341378619 0.000000e+00 3374.0
8 TraesCS1D01G164900 chr1B 84.524 336 46 6 3 335 94009560 94009228 9.350000e-86 327.0
9 TraesCS1D01G164900 chr1B 78.231 294 54 10 34 322 554521702 554521990 2.770000e-41 180.0
10 TraesCS1D01G164900 chr1A 95.289 2059 63 15 509 2560 309789328 309791359 0.000000e+00 3234.0
11 TraesCS1D01G164900 chr1A 83.383 337 46 8 3 334 6332069 6331738 1.570000e-78 303.0
12 TraesCS1D01G164900 chr1A 89.928 139 9 3 361 495 309788422 309788559 1.290000e-39 174.0
13 TraesCS1D01G164900 chr1A 94.737 38 1 1 436 472 19752296 19752259 1.350000e-04 58.4
14 TraesCS1D01G164900 chr7D 94.753 953 31 8 2558 3492 204099795 204100746 0.000000e+00 1465.0
15 TraesCS1D01G164900 chr7D 93.593 874 36 6 2559 3414 554498999 554499870 0.000000e+00 1286.0
16 TraesCS1D01G164900 chr7D 85.373 335 45 4 3 335 478799251 478798919 9.280000e-91 344.0
17 TraesCS1D01G164900 chr3D 94.031 955 37 5 2558 3492 20700362 20701316 0.000000e+00 1430.0
18 TraesCS1D01G164900 chr3D 93.737 958 40 6 2553 3492 110587455 110588410 0.000000e+00 1419.0
19 TraesCS1D01G164900 chr3D 93.697 952 42 4 2558 3492 31388702 31387752 0.000000e+00 1410.0
20 TraesCS1D01G164900 chr3D 91.638 873 59 12 2558 3419 281090724 281091593 0.000000e+00 1195.0
21 TraesCS1D01G164900 chr3D 84.024 338 50 4 3 338 607059093 607058758 4.350000e-84 322.0
22 TraesCS1D01G164900 chr3D 81.894 359 57 6 3 355 427151274 427151630 2.640000e-76 296.0
23 TraesCS1D01G164900 chr6D 93.704 953 36 7 2558 3492 423443758 423442812 0.000000e+00 1406.0
24 TraesCS1D01G164900 chr6D 84.290 331 48 4 3 331 6830926 6830598 1.560000e-83 320.0
25 TraesCS1D01G164900 chr6D 83.776 339 49 6 3 338 455635718 455635383 2.020000e-82 316.0
26 TraesCS1D01G164900 chr6D 82.840 338 54 4 3 338 16281091 16280756 2.040000e-77 300.0
27 TraesCS1D01G164900 chr6D 90.708 226 18 3 38 261 388225980 388225756 7.330000e-77 298.0
28 TraesCS1D01G164900 chr6D 82.196 337 53 5 3 337 473518163 473517832 2.050000e-72 283.0
29 TraesCS1D01G164900 chr6D 81.627 332 57 4 3 332 63317012 63317341 4.440000e-69 272.0
30 TraesCS1D01G164900 chr6D 83.108 296 40 9 3 291 72055495 72055787 9.610000e-66 261.0
31 TraesCS1D01G164900 chr6D 80.556 324 54 7 3 324 420620010 420620326 1.250000e-59 241.0
32 TraesCS1D01G164900 chr6D 80.000 285 47 8 78 355 127681593 127681312 5.910000e-48 202.0
33 TraesCS1D01G164900 chr6B 93.375 951 44 5 2559 3492 703324413 703323465 0.000000e+00 1389.0
34 TraesCS1D01G164900 chr5B 93.236 887 36 13 2554 3419 425871856 425872739 0.000000e+00 1284.0
35 TraesCS1D01G164900 chr5B 92.890 872 42 9 2558 3419 276912191 276913052 0.000000e+00 1249.0
36 TraesCS1D01G164900 chr5B 82.840 338 54 4 3 338 54711828 54711493 2.040000e-77 300.0
37 TraesCS1D01G164900 chr5D 93.303 881 36 12 2558 3417 450700663 450699785 0.000000e+00 1279.0
38 TraesCS1D01G164900 chr5D 84.639 332 47 4 3 332 464702325 464702654 9.350000e-86 327.0
39 TraesCS1D01G164900 chr5D 83.133 332 52 4 3 332 74150055 74150384 2.040000e-77 300.0
40 TraesCS1D01G164900 chr5A 90.764 877 65 13 2555 3419 618480968 618481840 0.000000e+00 1157.0
41 TraesCS1D01G164900 chr5A 80.594 438 74 11 1020 1450 563376389 563375956 9.350000e-86 327.0
42 TraesCS1D01G164900 chr2A 90.389 874 68 14 2558 3419 764681465 764680596 0.000000e+00 1134.0
43 TraesCS1D01G164900 chr7A 89.462 873 63 14 2558 3419 39137729 39138583 0.000000e+00 1075.0
44 TraesCS1D01G164900 chr7A 82.842 373 52 10 3 368 634327780 634327413 1.210000e-84 324.0
45 TraesCS1D01G164900 chr3B 83.420 386 50 12 3 380 528711517 528711138 2.580000e-91 346.0
46 TraesCS1D01G164900 chr3B 82.383 386 54 12 3 380 383472432 383472053 1.210000e-84 324.0
47 TraesCS1D01G164900 chr7B 85.417 336 43 6 3 335 662960478 662960146 9.280000e-91 344.0
48 TraesCS1D01G164900 chr7B 85.241 332 45 4 3 332 498599343 498599672 4.320000e-89 339.0
49 TraesCS1D01G164900 chr4D 85.586 333 42 6 3 332 127152977 127153306 9.280000e-91 344.0
50 TraesCS1D01G164900 chr2B 84.478 335 48 4 3 335 792464661 792464329 9.350000e-86 327.0
51 TraesCS1D01G164900 chr2B 84.877 324 45 4 3 324 560185102 560184781 1.210000e-84 324.0
52 TraesCS1D01G164900 chr4A 79.358 436 77 12 1020 1450 730886701 730887128 9.480000e-76 294.0
53 TraesCS1D01G164900 chr6A 81.283 374 58 10 3 368 570490263 570490632 3.410000e-75 292.0
54 TraesCS1D01G164900 chr6A 81.402 371 52 13 3 365 594297 594658 1.590000e-73 287.0
55 TraesCS1D01G164900 chrUn 76.965 369 61 14 4 356 2242746 2243106 4.600000e-44 189.0
56 TraesCS1D01G164900 chrUn 91.892 111 8 1 122 232 99710754 99710863 1.680000e-33 154.0
57 TraesCS1D01G164900 chrUn 84.507 142 19 3 62 201 277448202 277448062 1.690000e-28 137.0
58 TraesCS1D01G164900 chrUn 83.448 145 21 3 59 201 15400924 15401067 7.860000e-27 132.0
59 TraesCS1D01G164900 chrUn 80.909 110 19 1 3 110 326155700 326155591 6.210000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G164900 chr1D 235984478 235987969 3491 True 6449 6449 100.0000 1 3492 1 chr1D.!!$R2 3491
1 TraesCS1D01G164900 chr1D 236091969 236094036 2067 True 3338 3338 95.8230 496 2563 1 chr1D.!!$R3 2067
2 TraesCS1D01G164900 chr1B 341378619 341380667 2048 True 3374 3374 96.2780 496 2563 1 chr1B.!!$R2 2067
3 TraesCS1D01G164900 chr1A 309788422 309791359 2937 False 1704 3234 92.6085 361 2560 2 chr1A.!!$F1 2199
4 TraesCS1D01G164900 chr7D 204099795 204100746 951 False 1465 1465 94.7530 2558 3492 1 chr7D.!!$F1 934
5 TraesCS1D01G164900 chr7D 554498999 554499870 871 False 1286 1286 93.5930 2559 3414 1 chr7D.!!$F2 855
6 TraesCS1D01G164900 chr3D 20700362 20701316 954 False 1430 1430 94.0310 2558 3492 1 chr3D.!!$F1 934
7 TraesCS1D01G164900 chr3D 110587455 110588410 955 False 1419 1419 93.7370 2553 3492 1 chr3D.!!$F2 939
8 TraesCS1D01G164900 chr3D 31387752 31388702 950 True 1410 1410 93.6970 2558 3492 1 chr3D.!!$R1 934
9 TraesCS1D01G164900 chr3D 281090724 281091593 869 False 1195 1195 91.6380 2558 3419 1 chr3D.!!$F3 861
10 TraesCS1D01G164900 chr6D 423442812 423443758 946 True 1406 1406 93.7040 2558 3492 1 chr6D.!!$R5 934
11 TraesCS1D01G164900 chr6B 703323465 703324413 948 True 1389 1389 93.3750 2559 3492 1 chr6B.!!$R1 933
12 TraesCS1D01G164900 chr5B 425871856 425872739 883 False 1284 1284 93.2360 2554 3419 1 chr5B.!!$F2 865
13 TraesCS1D01G164900 chr5B 276912191 276913052 861 False 1249 1249 92.8900 2558 3419 1 chr5B.!!$F1 861
14 TraesCS1D01G164900 chr5D 450699785 450700663 878 True 1279 1279 93.3030 2558 3417 1 chr5D.!!$R1 859
15 TraesCS1D01G164900 chr5A 618480968 618481840 872 False 1157 1157 90.7640 2555 3419 1 chr5A.!!$F1 864
16 TraesCS1D01G164900 chr2A 764680596 764681465 869 True 1134 1134 90.3890 2558 3419 1 chr2A.!!$R1 861
17 TraesCS1D01G164900 chr7A 39137729 39138583 854 False 1075 1075 89.4620 2558 3419 1 chr7A.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.034089 GCTGGCAGGTATGGTTTCCT 60.034 55.0 17.64 0.0 33.96 3.36 F
161 162 0.036765 CCCGGGTCTGATTCGTTCAA 60.037 55.0 14.18 0.0 32.78 2.69 F
259 260 0.105039 GGGTGATGAGGTGATCCGTC 59.895 60.0 0.00 0.0 39.05 4.79 F
1539 2328 0.534203 ATGGCTGACCGTTGTTCGTT 60.534 50.0 0.00 0.0 39.70 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 2205 1.539124 AAAGAGGAGGAGCGGGGTT 60.539 57.895 0.00 0.0 0.00 4.11 R
1539 2328 2.028484 GGCGTGTCACCTGAACGA 59.972 61.111 11.63 0.0 39.64 3.85 R
2239 3028 1.005394 GAAGTCCAGGTCGCCGAAA 60.005 57.895 0.00 0.0 0.00 3.46 R
3070 3902 0.322456 CTTGGGGGCGTCATTCTTGA 60.322 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.165380 CAGTGGTCTGCATCAACGG 58.835 57.895 0.00 0.00 34.79 4.44
19 20 1.672356 AGTGGTCTGCATCAACGGC 60.672 57.895 0.00 0.00 0.00 5.68
20 21 1.965930 GTGGTCTGCATCAACGGCA 60.966 57.895 0.00 0.00 39.32 5.69
21 22 1.002257 TGGTCTGCATCAACGGCAT 60.002 52.632 0.00 0.00 41.06 4.40
22 23 1.026182 TGGTCTGCATCAACGGCATC 61.026 55.000 0.00 0.00 41.06 3.91
23 24 0.745845 GGTCTGCATCAACGGCATCT 60.746 55.000 0.00 0.00 41.06 2.90
24 25 1.473257 GGTCTGCATCAACGGCATCTA 60.473 52.381 0.00 0.00 41.06 1.98
25 26 1.863454 GTCTGCATCAACGGCATCTAG 59.137 52.381 0.00 0.00 41.06 2.43
26 27 1.756538 TCTGCATCAACGGCATCTAGA 59.243 47.619 0.00 0.00 41.06 2.43
27 28 2.168313 TCTGCATCAACGGCATCTAGAA 59.832 45.455 0.00 0.00 41.06 2.10
28 29 2.543012 CTGCATCAACGGCATCTAGAAG 59.457 50.000 0.00 0.00 41.06 2.85
29 30 2.168313 TGCATCAACGGCATCTAGAAGA 59.832 45.455 0.00 0.00 36.11 2.87
30 31 3.181462 TGCATCAACGGCATCTAGAAGAT 60.181 43.478 0.00 0.00 36.11 2.40
42 43 4.991153 TCTAGAAGATGAATCGTGTGCT 57.009 40.909 0.00 0.00 0.00 4.40
43 44 4.676546 TCTAGAAGATGAATCGTGTGCTG 58.323 43.478 0.00 0.00 0.00 4.41
44 45 2.625737 AGAAGATGAATCGTGTGCTGG 58.374 47.619 0.00 0.00 0.00 4.85
45 46 1.667724 GAAGATGAATCGTGTGCTGGG 59.332 52.381 0.00 0.00 0.00 4.45
46 47 0.904649 AGATGAATCGTGTGCTGGGA 59.095 50.000 0.00 0.00 0.00 4.37
47 48 1.487976 AGATGAATCGTGTGCTGGGAT 59.512 47.619 0.00 0.00 0.00 3.85
48 49 1.869767 GATGAATCGTGTGCTGGGATC 59.130 52.381 0.00 0.00 0.00 3.36
49 50 0.460109 TGAATCGTGTGCTGGGATCG 60.460 55.000 0.00 0.00 0.00 3.69
50 51 0.460284 GAATCGTGTGCTGGGATCGT 60.460 55.000 0.00 0.00 0.00 3.73
51 52 0.740868 AATCGTGTGCTGGGATCGTG 60.741 55.000 0.00 0.00 0.00 4.35
52 53 2.578163 ATCGTGTGCTGGGATCGTGG 62.578 60.000 0.00 0.00 0.00 4.94
53 54 2.347490 GTGTGCTGGGATCGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
54 55 1.302511 GTGTGCTGGGATCGTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
55 56 0.889186 GTGTGCTGGGATCGTGGTTT 60.889 55.000 0.00 0.00 0.00 3.27
56 57 0.888736 TGTGCTGGGATCGTGGTTTG 60.889 55.000 0.00 0.00 0.00 2.93
57 58 0.889186 GTGCTGGGATCGTGGTTTGT 60.889 55.000 0.00 0.00 0.00 2.83
58 59 0.888736 TGCTGGGATCGTGGTTTGTG 60.889 55.000 0.00 0.00 0.00 3.33
59 60 1.586154 GCTGGGATCGTGGTTTGTGG 61.586 60.000 0.00 0.00 0.00 4.17
60 61 1.586154 CTGGGATCGTGGTTTGTGGC 61.586 60.000 0.00 0.00 0.00 5.01
61 62 1.303317 GGGATCGTGGTTTGTGGCT 60.303 57.895 0.00 0.00 0.00 4.75
62 63 1.586154 GGGATCGTGGTTTGTGGCTG 61.586 60.000 0.00 0.00 0.00 4.85
63 64 1.586154 GGATCGTGGTTTGTGGCTGG 61.586 60.000 0.00 0.00 0.00 4.85
64 65 2.200170 GATCGTGGTTTGTGGCTGGC 62.200 60.000 0.00 0.00 0.00 4.85
65 66 2.974692 ATCGTGGTTTGTGGCTGGCA 62.975 55.000 0.00 0.00 0.00 4.92
66 67 2.730094 GTGGTTTGTGGCTGGCAG 59.270 61.111 10.94 10.94 0.00 4.85
67 68 2.521465 TGGTTTGTGGCTGGCAGG 60.521 61.111 17.64 0.00 0.00 4.85
68 69 2.521708 GGTTTGTGGCTGGCAGGT 60.522 61.111 17.64 0.00 0.00 4.00
69 70 1.228429 GGTTTGTGGCTGGCAGGTA 60.228 57.895 17.64 0.00 0.00 3.08
70 71 0.611896 GGTTTGTGGCTGGCAGGTAT 60.612 55.000 17.64 0.00 0.00 2.73
71 72 0.527565 GTTTGTGGCTGGCAGGTATG 59.472 55.000 17.64 0.00 0.00 2.39
72 73 0.611618 TTTGTGGCTGGCAGGTATGG 60.612 55.000 17.64 0.00 0.00 2.74
73 74 1.788518 TTGTGGCTGGCAGGTATGGT 61.789 55.000 17.64 0.00 0.00 3.55
74 75 1.000896 GTGGCTGGCAGGTATGGTT 60.001 57.895 17.64 0.00 0.00 3.67
75 76 0.611896 GTGGCTGGCAGGTATGGTTT 60.612 55.000 17.64 0.00 0.00 3.27
76 77 0.323360 TGGCTGGCAGGTATGGTTTC 60.323 55.000 17.64 0.00 0.00 2.78
77 78 1.037579 GGCTGGCAGGTATGGTTTCC 61.038 60.000 17.64 1.16 0.00 3.13
78 79 0.034089 GCTGGCAGGTATGGTTTCCT 60.034 55.000 17.64 0.00 33.96 3.36
79 80 2.019156 GCTGGCAGGTATGGTTTCCTC 61.019 57.143 17.64 0.00 30.91 3.71
80 81 0.623723 TGGCAGGTATGGTTTCCTCC 59.376 55.000 0.00 0.00 30.91 4.30
81 82 0.919710 GGCAGGTATGGTTTCCTCCT 59.080 55.000 0.00 0.00 30.91 3.69
82 83 1.134068 GGCAGGTATGGTTTCCTCCTC 60.134 57.143 0.00 0.00 30.91 3.71
83 84 1.134068 GCAGGTATGGTTTCCTCCTCC 60.134 57.143 0.00 0.00 30.91 4.30
84 85 1.139058 CAGGTATGGTTTCCTCCTCCG 59.861 57.143 0.00 0.00 30.91 4.63
85 86 1.007963 AGGTATGGTTTCCTCCTCCGA 59.992 52.381 0.00 0.00 0.00 4.55
86 87 1.138464 GGTATGGTTTCCTCCTCCGAC 59.862 57.143 0.00 0.00 0.00 4.79
87 88 1.108776 TATGGTTTCCTCCTCCGACG 58.891 55.000 0.00 0.00 0.00 5.12
88 89 0.903454 ATGGTTTCCTCCTCCGACGT 60.903 55.000 0.00 0.00 0.00 4.34
89 90 1.214853 GGTTTCCTCCTCCGACGTC 59.785 63.158 5.18 5.18 0.00 4.34
90 91 1.249469 GGTTTCCTCCTCCGACGTCT 61.249 60.000 14.70 0.00 0.00 4.18
91 92 0.602060 GTTTCCTCCTCCGACGTCTT 59.398 55.000 14.70 0.00 0.00 3.01
92 93 1.815003 GTTTCCTCCTCCGACGTCTTA 59.185 52.381 14.70 0.00 0.00 2.10
93 94 1.747709 TTCCTCCTCCGACGTCTTAG 58.252 55.000 14.70 10.27 0.00 2.18
94 95 0.617413 TCCTCCTCCGACGTCTTAGT 59.383 55.000 14.70 0.00 0.00 2.24
95 96 1.015868 CCTCCTCCGACGTCTTAGTC 58.984 60.000 14.70 0.00 37.76 2.59
101 102 4.053067 GACGTCTTAGTCGTGCGG 57.947 61.111 9.41 0.00 41.64 5.69
102 103 1.513586 GACGTCTTAGTCGTGCGGG 60.514 63.158 9.41 0.00 41.64 6.13
103 104 2.202570 CGTCTTAGTCGTGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
104 105 2.183555 GTCTTAGTCGTGCGGGGG 59.816 66.667 0.00 0.00 0.00 5.40
105 106 2.283388 TCTTAGTCGTGCGGGGGT 60.283 61.111 0.00 0.00 0.00 4.95
106 107 2.125673 CTTAGTCGTGCGGGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
107 108 4.382320 TTAGTCGTGCGGGGGTGC 62.382 66.667 0.00 0.00 0.00 5.01
118 119 3.171388 GGGGTGCCAGATCGGGAT 61.171 66.667 16.86 0.00 37.50 3.85
119 120 1.841556 GGGGTGCCAGATCGGGATA 60.842 63.158 16.86 0.38 37.50 2.59
120 121 1.415672 GGGGTGCCAGATCGGGATAA 61.416 60.000 16.86 0.00 37.50 1.75
121 122 0.472471 GGGTGCCAGATCGGGATAAA 59.528 55.000 16.86 0.00 37.50 1.40
122 123 1.073923 GGGTGCCAGATCGGGATAAAT 59.926 52.381 16.86 0.00 37.50 1.40
123 124 2.154462 GGTGCCAGATCGGGATAAATG 58.846 52.381 16.86 0.00 37.50 2.32
124 125 2.154462 GTGCCAGATCGGGATAAATGG 58.846 52.381 16.86 2.38 37.50 3.16
125 126 1.168714 GCCAGATCGGGATAAATGGC 58.831 55.000 16.86 9.30 45.61 4.40
126 127 1.442769 CCAGATCGGGATAAATGGCG 58.557 55.000 5.91 0.00 0.00 5.69
127 128 1.270839 CCAGATCGGGATAAATGGCGT 60.271 52.381 5.91 0.00 0.00 5.68
128 129 1.800586 CAGATCGGGATAAATGGCGTG 59.199 52.381 0.00 0.00 0.00 5.34
129 130 1.416401 AGATCGGGATAAATGGCGTGT 59.584 47.619 0.00 0.00 0.00 4.49
130 131 1.798813 GATCGGGATAAATGGCGTGTC 59.201 52.381 0.00 0.00 0.00 3.67
131 132 0.179067 TCGGGATAAATGGCGTGTCC 60.179 55.000 0.00 0.00 0.00 4.02
132 133 1.495584 CGGGATAAATGGCGTGTCCG 61.496 60.000 0.00 0.00 37.80 4.79
133 134 1.164041 GGGATAAATGGCGTGTCCGG 61.164 60.000 0.00 0.00 37.80 5.14
134 135 1.164041 GGATAAATGGCGTGTCCGGG 61.164 60.000 0.00 0.00 37.80 5.73
135 136 1.153046 ATAAATGGCGTGTCCGGGG 60.153 57.895 0.00 0.00 37.80 5.73
136 137 1.917336 ATAAATGGCGTGTCCGGGGT 61.917 55.000 0.00 0.00 37.80 4.95
137 138 2.806503 TAAATGGCGTGTCCGGGGTG 62.807 60.000 0.00 0.00 37.80 4.61
152 153 3.948719 GTGTTGCCCCGGGTCTGA 61.949 66.667 21.85 0.00 0.00 3.27
153 154 2.933287 TGTTGCCCCGGGTCTGAT 60.933 61.111 21.85 0.00 0.00 2.90
154 155 2.355115 GTTGCCCCGGGTCTGATT 59.645 61.111 21.85 0.00 0.00 2.57
155 156 1.749258 GTTGCCCCGGGTCTGATTC 60.749 63.158 21.85 0.00 0.00 2.52
156 157 3.323758 TTGCCCCGGGTCTGATTCG 62.324 63.158 21.85 1.58 0.00 3.34
157 158 3.782443 GCCCCGGGTCTGATTCGT 61.782 66.667 21.85 0.00 0.00 3.85
158 159 2.987125 CCCCGGGTCTGATTCGTT 59.013 61.111 21.85 0.00 0.00 3.85
159 160 1.153429 CCCCGGGTCTGATTCGTTC 60.153 63.158 21.85 0.00 0.00 3.95
160 161 1.594833 CCCGGGTCTGATTCGTTCA 59.405 57.895 14.18 0.00 0.00 3.18
161 162 0.036765 CCCGGGTCTGATTCGTTCAA 60.037 55.000 14.18 0.00 32.78 2.69
162 163 1.076332 CCGGGTCTGATTCGTTCAAC 58.924 55.000 0.00 0.00 32.78 3.18
163 164 0.713883 CGGGTCTGATTCGTTCAACG 59.286 55.000 2.64 2.64 44.19 4.10
164 165 1.076332 GGGTCTGATTCGTTCAACGG 58.924 55.000 10.69 0.00 42.81 4.44
165 166 0.442699 GGTCTGATTCGTTCAACGGC 59.557 55.000 10.69 0.72 42.81 5.68
166 167 1.144969 GTCTGATTCGTTCAACGGCA 58.855 50.000 10.69 5.55 42.81 5.69
167 168 1.529438 GTCTGATTCGTTCAACGGCAA 59.471 47.619 10.69 0.00 42.81 4.52
168 169 2.159627 GTCTGATTCGTTCAACGGCAAT 59.840 45.455 10.69 3.11 42.81 3.56
169 170 2.159430 TCTGATTCGTTCAACGGCAATG 59.841 45.455 10.69 0.00 42.81 2.82
170 171 1.198867 TGATTCGTTCAACGGCAATGG 59.801 47.619 10.69 0.00 42.81 3.16
171 172 1.199097 GATTCGTTCAACGGCAATGGT 59.801 47.619 10.69 0.00 42.81 3.55
172 173 1.025812 TTCGTTCAACGGCAATGGTT 58.974 45.000 10.69 0.00 42.81 3.67
173 174 1.025812 TCGTTCAACGGCAATGGTTT 58.974 45.000 10.69 0.00 42.81 3.27
174 175 1.002251 TCGTTCAACGGCAATGGTTTC 60.002 47.619 10.69 0.00 42.81 2.78
175 176 1.404477 GTTCAACGGCAATGGTTTCG 58.596 50.000 0.00 0.00 0.00 3.46
176 177 0.318275 TTCAACGGCAATGGTTTCGC 60.318 50.000 0.00 0.00 0.00 4.70
177 178 1.007964 CAACGGCAATGGTTTCGCA 60.008 52.632 0.00 0.00 0.00 5.10
178 179 0.388391 CAACGGCAATGGTTTCGCAT 60.388 50.000 0.00 0.00 0.00 4.73
179 180 0.316841 AACGGCAATGGTTTCGCATT 59.683 45.000 0.00 0.00 0.00 3.56
180 181 0.316841 ACGGCAATGGTTTCGCATTT 59.683 45.000 0.00 0.00 0.00 2.32
181 182 0.714994 CGGCAATGGTTTCGCATTTG 59.285 50.000 0.00 0.00 0.00 2.32
182 183 1.794512 GGCAATGGTTTCGCATTTGT 58.205 45.000 0.00 0.00 0.00 2.83
183 184 2.142319 GGCAATGGTTTCGCATTTGTT 58.858 42.857 0.00 0.00 0.00 2.83
184 185 2.096318 GGCAATGGTTTCGCATTTGTTG 60.096 45.455 0.00 0.00 0.00 3.33
185 186 2.799412 GCAATGGTTTCGCATTTGTTGA 59.201 40.909 0.00 0.00 0.00 3.18
186 187 3.120923 GCAATGGTTTCGCATTTGTTGAG 60.121 43.478 0.00 0.00 0.00 3.02
187 188 2.132740 TGGTTTCGCATTTGTTGAGC 57.867 45.000 0.00 0.00 0.00 4.26
188 189 1.269517 TGGTTTCGCATTTGTTGAGCC 60.270 47.619 0.00 0.00 0.00 4.70
189 190 1.269517 GGTTTCGCATTTGTTGAGCCA 60.270 47.619 0.00 0.00 0.00 4.75
190 191 1.786579 GTTTCGCATTTGTTGAGCCAC 59.213 47.619 0.00 0.00 0.00 5.01
191 192 0.313672 TTCGCATTTGTTGAGCCACC 59.686 50.000 0.00 0.00 0.00 4.61
192 193 0.537143 TCGCATTTGTTGAGCCACCT 60.537 50.000 0.00 0.00 0.00 4.00
193 194 0.314935 CGCATTTGTTGAGCCACCTT 59.685 50.000 0.00 0.00 0.00 3.50
194 195 1.787012 GCATTTGTTGAGCCACCTTG 58.213 50.000 0.00 0.00 0.00 3.61
195 196 1.340889 GCATTTGTTGAGCCACCTTGA 59.659 47.619 0.00 0.00 0.00 3.02
196 197 2.224018 GCATTTGTTGAGCCACCTTGAA 60.224 45.455 0.00 0.00 0.00 2.69
197 198 3.645884 CATTTGTTGAGCCACCTTGAAG 58.354 45.455 0.00 0.00 0.00 3.02
198 199 1.691196 TTGTTGAGCCACCTTGAAGG 58.309 50.000 10.24 10.24 42.49 3.46
208 209 1.581447 CCTTGAAGGTCCGCAAAGC 59.419 57.895 2.25 0.00 0.00 3.51
209 210 0.890996 CCTTGAAGGTCCGCAAAGCT 60.891 55.000 2.25 0.00 0.00 3.74
210 211 0.239347 CTTGAAGGTCCGCAAAGCTG 59.761 55.000 0.00 0.00 0.00 4.24
211 212 1.172180 TTGAAGGTCCGCAAAGCTGG 61.172 55.000 0.00 0.00 0.00 4.85
212 213 1.302511 GAAGGTCCGCAAAGCTGGA 60.303 57.895 0.00 0.00 0.00 3.86
213 214 0.678048 GAAGGTCCGCAAAGCTGGAT 60.678 55.000 0.00 0.00 34.90 3.41
214 215 0.618458 AAGGTCCGCAAAGCTGGATA 59.382 50.000 0.00 0.00 34.90 2.59
215 216 0.839946 AGGTCCGCAAAGCTGGATAT 59.160 50.000 0.00 0.00 34.90 1.63
216 217 1.202698 AGGTCCGCAAAGCTGGATATC 60.203 52.381 0.00 0.00 34.90 1.63
217 218 1.202698 GGTCCGCAAAGCTGGATATCT 60.203 52.381 2.05 0.00 34.90 1.98
218 219 1.869767 GTCCGCAAAGCTGGATATCTG 59.130 52.381 2.05 0.00 34.90 2.90
219 220 0.590195 CCGCAAAGCTGGATATCTGC 59.410 55.000 2.05 7.79 40.14 4.26
220 221 0.234106 CGCAAAGCTGGATATCTGCG 59.766 55.000 16.95 16.95 45.38 5.18
221 222 1.586422 GCAAAGCTGGATATCTGCGA 58.414 50.000 2.05 0.00 43.84 5.10
222 223 2.149578 GCAAAGCTGGATATCTGCGAT 58.850 47.619 2.05 0.78 43.84 4.58
223 224 2.095869 GCAAAGCTGGATATCTGCGATG 60.096 50.000 2.05 11.87 43.84 3.84
224 225 2.469274 AAGCTGGATATCTGCGATGG 57.531 50.000 2.05 0.00 43.84 3.51
225 226 1.637338 AGCTGGATATCTGCGATGGA 58.363 50.000 2.05 0.00 43.84 3.41
226 227 1.549620 AGCTGGATATCTGCGATGGAG 59.450 52.381 2.05 0.00 43.84 3.86
227 228 2.006056 GCTGGATATCTGCGATGGAGC 61.006 57.143 2.05 0.00 37.71 4.70
228 229 0.610174 TGGATATCTGCGATGGAGCC 59.390 55.000 2.05 0.00 36.02 4.70
229 230 0.459237 GGATATCTGCGATGGAGCCG 60.459 60.000 2.05 0.00 36.02 5.52
250 251 2.415010 CGAGCTCGGGTGATGAGG 59.585 66.667 28.40 0.00 33.99 3.86
251 252 2.418910 CGAGCTCGGGTGATGAGGT 61.419 63.158 28.40 0.00 46.13 3.85
252 253 1.142748 GAGCTCGGGTGATGAGGTG 59.857 63.158 0.00 0.00 43.71 4.00
253 254 1.305297 AGCTCGGGTGATGAGGTGA 60.305 57.895 0.00 0.00 42.22 4.02
254 255 0.689080 AGCTCGGGTGATGAGGTGAT 60.689 55.000 0.00 0.00 42.22 3.06
255 256 0.249657 GCTCGGGTGATGAGGTGATC 60.250 60.000 0.00 0.00 33.99 2.92
256 257 0.390860 CTCGGGTGATGAGGTGATCC 59.609 60.000 0.00 0.00 0.00 3.36
257 258 1.068083 CGGGTGATGAGGTGATCCG 59.932 63.158 0.00 0.00 39.05 4.18
258 259 1.676678 CGGGTGATGAGGTGATCCGT 61.677 60.000 0.00 0.00 39.05 4.69
259 260 0.105039 GGGTGATGAGGTGATCCGTC 59.895 60.000 0.00 0.00 39.05 4.79
260 261 0.824109 GGTGATGAGGTGATCCGTCA 59.176 55.000 8.40 8.40 39.05 4.35
261 262 1.207089 GGTGATGAGGTGATCCGTCAA 59.793 52.381 9.58 0.00 35.80 3.18
262 263 2.354704 GGTGATGAGGTGATCCGTCAAA 60.355 50.000 9.58 1.74 35.80 2.69
263 264 3.535561 GTGATGAGGTGATCCGTCAAAT 58.464 45.455 9.58 0.00 35.80 2.32
264 265 3.941483 GTGATGAGGTGATCCGTCAAATT 59.059 43.478 9.58 0.00 35.80 1.82
265 266 4.396166 GTGATGAGGTGATCCGTCAAATTT 59.604 41.667 9.58 0.00 35.80 1.82
266 267 5.009631 TGATGAGGTGATCCGTCAAATTTT 58.990 37.500 9.58 0.00 35.80 1.82
267 268 5.123820 TGATGAGGTGATCCGTCAAATTTTC 59.876 40.000 9.58 4.93 35.80 2.29
268 269 3.756434 TGAGGTGATCCGTCAAATTTTCC 59.244 43.478 4.70 0.00 35.80 3.13
269 270 4.010349 GAGGTGATCCGTCAAATTTTCCT 58.990 43.478 0.00 0.00 35.80 3.36
270 271 4.407365 AGGTGATCCGTCAAATTTTCCTT 58.593 39.130 0.00 0.00 35.80 3.36
271 272 4.832823 AGGTGATCCGTCAAATTTTCCTTT 59.167 37.500 0.00 0.00 35.80 3.11
272 273 4.923281 GGTGATCCGTCAAATTTTCCTTTG 59.077 41.667 0.00 0.00 35.80 2.77
273 274 5.278758 GGTGATCCGTCAAATTTTCCTTTGA 60.279 40.000 0.00 0.00 41.56 2.69
274 275 6.389906 GTGATCCGTCAAATTTTCCTTTGAT 58.610 36.000 2.91 0.00 44.48 2.57
275 276 6.868339 GTGATCCGTCAAATTTTCCTTTGATT 59.132 34.615 2.91 0.00 44.48 2.57
276 277 6.867816 TGATCCGTCAAATTTTCCTTTGATTG 59.132 34.615 2.91 0.37 44.48 2.67
277 278 6.155475 TCCGTCAAATTTTCCTTTGATTGT 57.845 33.333 2.91 0.00 44.48 2.71
278 279 6.578023 TCCGTCAAATTTTCCTTTGATTGTT 58.422 32.000 2.91 0.00 44.48 2.83
279 280 6.478344 TCCGTCAAATTTTCCTTTGATTGTTG 59.522 34.615 2.91 0.00 44.48 3.33
280 281 6.257630 CCGTCAAATTTTCCTTTGATTGTTGT 59.742 34.615 2.91 0.00 44.48 3.32
281 282 7.201600 CCGTCAAATTTTCCTTTGATTGTTGTT 60.202 33.333 2.91 0.00 44.48 2.83
282 283 7.635587 CGTCAAATTTTCCTTTGATTGTTGTTG 59.364 33.333 2.91 0.00 44.48 3.33
283 284 7.429051 GTCAAATTTTCCTTTGATTGTTGTTGC 59.571 33.333 2.91 0.00 44.48 4.17
284 285 5.655893 ATTTTCCTTTGATTGTTGTTGCG 57.344 34.783 0.00 0.00 0.00 4.85
285 286 2.791383 TCCTTTGATTGTTGTTGCGG 57.209 45.000 0.00 0.00 0.00 5.69
286 287 2.028130 TCCTTTGATTGTTGTTGCGGT 58.972 42.857 0.00 0.00 0.00 5.68
287 288 3.215151 TCCTTTGATTGTTGTTGCGGTA 58.785 40.909 0.00 0.00 0.00 4.02
288 289 3.252215 TCCTTTGATTGTTGTTGCGGTAG 59.748 43.478 0.00 0.00 0.00 3.18
289 290 3.004315 CCTTTGATTGTTGTTGCGGTAGT 59.996 43.478 0.00 0.00 0.00 2.73
290 291 3.617540 TTGATTGTTGTTGCGGTAGTG 57.382 42.857 0.00 0.00 0.00 2.74
291 292 1.265635 TGATTGTTGTTGCGGTAGTGC 59.734 47.619 0.00 0.00 0.00 4.40
292 293 0.596082 ATTGTTGTTGCGGTAGTGCC 59.404 50.000 0.00 0.00 0.00 5.01
308 309 3.862124 CCGAAGGCAGACGACAAG 58.138 61.111 0.00 0.00 46.14 3.16
309 310 2.383527 CCGAAGGCAGACGACAAGC 61.384 63.158 0.00 0.00 46.14 4.01
321 322 2.787723 CGACAAGCGTTGGTATCAAG 57.212 50.000 0.00 0.00 32.92 3.02
322 323 1.201921 CGACAAGCGTTGGTATCAAGC 60.202 52.381 0.00 0.00 32.92 4.01
323 324 2.076863 GACAAGCGTTGGTATCAAGCT 58.923 47.619 6.80 6.80 38.24 3.74
324 325 2.484264 GACAAGCGTTGGTATCAAGCTT 59.516 45.455 15.42 15.42 42.39 3.74
325 326 3.670625 ACAAGCGTTGGTATCAAGCTTA 58.329 40.909 18.74 0.00 41.14 3.09
326 327 3.684788 ACAAGCGTTGGTATCAAGCTTAG 59.315 43.478 18.74 15.92 41.14 2.18
327 328 2.906354 AGCGTTGGTATCAAGCTTAGG 58.094 47.619 0.00 0.00 35.44 2.69
328 329 2.500098 AGCGTTGGTATCAAGCTTAGGA 59.500 45.455 0.00 0.00 35.44 2.94
329 330 2.866762 GCGTTGGTATCAAGCTTAGGAG 59.133 50.000 0.00 0.00 32.92 3.69
330 331 3.430374 GCGTTGGTATCAAGCTTAGGAGA 60.430 47.826 0.00 0.00 32.92 3.71
331 332 4.740934 GCGTTGGTATCAAGCTTAGGAGAT 60.741 45.833 0.00 0.00 32.92 2.75
332 333 5.360591 CGTTGGTATCAAGCTTAGGAGATT 58.639 41.667 0.00 0.00 32.92 2.40
333 334 5.817816 CGTTGGTATCAAGCTTAGGAGATTT 59.182 40.000 0.00 0.00 32.92 2.17
334 335 6.316390 CGTTGGTATCAAGCTTAGGAGATTTT 59.684 38.462 0.00 0.00 32.92 1.82
335 336 7.148239 CGTTGGTATCAAGCTTAGGAGATTTTT 60.148 37.037 0.00 0.00 32.92 1.94
379 380 3.553828 TTGGCTTGTACTACTATGGGC 57.446 47.619 0.00 0.00 0.00 5.36
380 381 1.766496 TGGCTTGTACTACTATGGGCC 59.234 52.381 0.00 0.00 38.87 5.80
389 390 4.222124 ACTACTATGGGCCAGTTCTTTG 57.778 45.455 13.78 0.00 0.00 2.77
394 395 2.997315 GGCCAGTTCTTTGGGGGC 60.997 66.667 0.00 0.00 43.86 5.80
413 414 4.262678 GGGGCCAACTTGCTTATTTTTACA 60.263 41.667 4.39 0.00 0.00 2.41
415 416 4.388773 GGCCAACTTGCTTATTTTTACAGC 59.611 41.667 0.00 0.00 0.00 4.40
468 469 9.996554 ATGAATGAGATATGTATTACCGTGAAA 57.003 29.630 0.00 0.00 0.00 2.69
507 512 2.022195 CCATGCAGTTTCTCCCATCTG 58.978 52.381 0.00 0.00 0.00 2.90
578 1344 2.460669 GCTGACCCCTTTTCCAATCAT 58.539 47.619 0.00 0.00 0.00 2.45
598 1364 2.022240 GAAGCCTGGAGTCCCGCTAG 62.022 65.000 18.52 4.47 34.29 3.42
654 1420 2.113139 CACACCCTCACACCACCC 59.887 66.667 0.00 0.00 0.00 4.61
655 1421 3.556306 ACACCCTCACACCACCCG 61.556 66.667 0.00 0.00 0.00 5.28
656 1422 3.238497 CACCCTCACACCACCCGA 61.238 66.667 0.00 0.00 0.00 5.14
657 1423 3.239253 ACCCTCACACCACCCGAC 61.239 66.667 0.00 0.00 0.00 4.79
658 1424 4.016706 CCCTCACACCACCCGACC 62.017 72.222 0.00 0.00 0.00 4.79
809 1575 3.081804 CCTAATTTCGACCCAGTTGCTT 58.918 45.455 0.00 0.00 0.00 3.91
810 1576 4.258543 CCTAATTTCGACCCAGTTGCTTA 58.741 43.478 0.00 0.00 0.00 3.09
815 1583 1.346395 TCGACCCAGTTGCTTACACAT 59.654 47.619 0.00 0.00 0.00 3.21
817 1585 2.671396 CGACCCAGTTGCTTACACATAC 59.329 50.000 0.00 0.00 0.00 2.39
925 1705 1.008079 GCAGCAAACACACCAGCTC 60.008 57.895 0.00 0.00 34.61 4.09
926 1706 1.727511 GCAGCAAACACACCAGCTCA 61.728 55.000 0.00 0.00 34.61 4.26
931 1711 2.884997 AAACACACCAGCTCACCGCA 62.885 55.000 0.00 0.00 42.61 5.69
932 1712 2.591429 CACACCAGCTCACCGCAA 60.591 61.111 0.00 0.00 42.61 4.85
1141 1921 3.253061 TGCGGTTCCACATCCCCA 61.253 61.111 0.00 0.00 0.00 4.96
1293 2073 4.406173 CTCGCCGTCGACTGCACT 62.406 66.667 27.83 0.00 40.21 4.40
1314 2094 1.875963 CGAGGGCGTGCTTTTCATT 59.124 52.632 0.00 0.00 0.00 2.57
1443 2223 1.539124 AACCCCGCTCCTCCTCTTT 60.539 57.895 0.00 0.00 0.00 2.52
1473 2253 3.430333 TTGCCTTTCTTTCGTGAAACC 57.570 42.857 0.00 0.00 33.11 3.27
1539 2328 0.534203 ATGGCTGACCGTTGTTCGTT 60.534 50.000 0.00 0.00 39.70 3.85
1795 2584 4.538283 ATCGTGCCGCTCGACGAG 62.538 66.667 20.56 20.56 46.91 4.18
2147 2936 1.602327 GGAGGTGGACGTGGAGTACC 61.602 65.000 0.00 0.00 32.78 3.34
2239 3028 4.309950 GACGTGACCAAGGCCGGT 62.310 66.667 1.90 1.33 43.91 5.28
2464 3253 1.373748 CGACGTCCCCGACATGTTT 60.374 57.895 10.58 0.00 37.88 2.83
2588 3383 2.185663 AAAGGATAACCCGGCCTCTA 57.814 50.000 0.00 0.00 40.87 2.43
2665 3460 9.853555 CAAAGTATTACAACAATATGCCTGAAA 57.146 29.630 0.00 0.00 0.00 2.69
2706 3501 5.746990 ATGCCACTACTCCTATTCATACC 57.253 43.478 0.00 0.00 0.00 2.73
2751 3547 3.708236 ATACCCAGTCCACTCACCTAT 57.292 47.619 0.00 0.00 0.00 2.57
3015 3845 3.314357 CGTCATCAATGTGCAGGATGAAT 59.686 43.478 17.03 0.00 46.28 2.57
3049 3881 2.640581 AAAAGAGCCGCCCACTGGTT 62.641 55.000 0.00 0.00 0.00 3.67
3070 3902 2.048877 CGAACCCGTGTACGCCTT 60.049 61.111 0.00 0.00 38.18 4.35
3144 3976 4.827835 TGATCTACTGATCTAGGGTTTCCG 59.172 45.833 7.42 0.00 46.84 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.915614 GCCGTTGATGCAGACCACTG 61.916 60.000 0.00 0.00 45.91 3.66
1 2 1.672356 GCCGTTGATGCAGACCACT 60.672 57.895 0.00 0.00 0.00 4.00
2 3 1.308069 ATGCCGTTGATGCAGACCAC 61.308 55.000 0.00 0.00 42.92 4.16
4 5 0.745845 AGATGCCGTTGATGCAGACC 60.746 55.000 0.00 0.00 42.92 3.85
5 6 1.863454 CTAGATGCCGTTGATGCAGAC 59.137 52.381 0.00 0.00 42.92 3.51
6 7 1.756538 TCTAGATGCCGTTGATGCAGA 59.243 47.619 0.00 0.00 42.92 4.26
7 8 2.229675 TCTAGATGCCGTTGATGCAG 57.770 50.000 0.00 0.00 42.92 4.41
8 9 2.168313 TCTTCTAGATGCCGTTGATGCA 59.832 45.455 0.00 0.00 43.97 3.96
9 10 2.826428 TCTTCTAGATGCCGTTGATGC 58.174 47.619 0.00 0.00 0.00 3.91
10 11 4.986875 CATCTTCTAGATGCCGTTGATG 57.013 45.455 3.93 0.00 44.69 3.07
20 21 5.288015 CAGCACACGATTCATCTTCTAGAT 58.712 41.667 0.00 0.00 34.74 1.98
21 22 4.440663 CCAGCACACGATTCATCTTCTAGA 60.441 45.833 0.00 0.00 0.00 2.43
22 23 3.801050 CCAGCACACGATTCATCTTCTAG 59.199 47.826 0.00 0.00 0.00 2.43
23 24 3.430790 CCCAGCACACGATTCATCTTCTA 60.431 47.826 0.00 0.00 0.00 2.10
24 25 2.625737 CCAGCACACGATTCATCTTCT 58.374 47.619 0.00 0.00 0.00 2.85
25 26 1.667724 CCCAGCACACGATTCATCTTC 59.332 52.381 0.00 0.00 0.00 2.87
26 27 1.278985 TCCCAGCACACGATTCATCTT 59.721 47.619 0.00 0.00 0.00 2.40
27 28 0.904649 TCCCAGCACACGATTCATCT 59.095 50.000 0.00 0.00 0.00 2.90
28 29 1.869767 GATCCCAGCACACGATTCATC 59.130 52.381 0.00 0.00 0.00 2.92
29 30 1.807755 CGATCCCAGCACACGATTCAT 60.808 52.381 0.00 0.00 0.00 2.57
30 31 0.460109 CGATCCCAGCACACGATTCA 60.460 55.000 0.00 0.00 0.00 2.57
31 32 0.460284 ACGATCCCAGCACACGATTC 60.460 55.000 0.00 0.00 0.00 2.52
32 33 0.740868 CACGATCCCAGCACACGATT 60.741 55.000 0.00 0.00 0.00 3.34
33 34 1.153568 CACGATCCCAGCACACGAT 60.154 57.895 0.00 0.00 0.00 3.73
34 35 2.261361 CACGATCCCAGCACACGA 59.739 61.111 0.00 0.00 0.00 4.35
35 36 2.815211 CCACGATCCCAGCACACG 60.815 66.667 0.00 0.00 0.00 4.49
36 37 0.889186 AAACCACGATCCCAGCACAC 60.889 55.000 0.00 0.00 0.00 3.82
37 38 0.888736 CAAACCACGATCCCAGCACA 60.889 55.000 0.00 0.00 0.00 4.57
38 39 0.889186 ACAAACCACGATCCCAGCAC 60.889 55.000 0.00 0.00 0.00 4.40
39 40 0.888736 CACAAACCACGATCCCAGCA 60.889 55.000 0.00 0.00 0.00 4.41
40 41 1.586154 CCACAAACCACGATCCCAGC 61.586 60.000 0.00 0.00 0.00 4.85
41 42 1.586154 GCCACAAACCACGATCCCAG 61.586 60.000 0.00 0.00 0.00 4.45
42 43 1.602323 GCCACAAACCACGATCCCA 60.602 57.895 0.00 0.00 0.00 4.37
43 44 1.303317 AGCCACAAACCACGATCCC 60.303 57.895 0.00 0.00 0.00 3.85
44 45 1.586154 CCAGCCACAAACCACGATCC 61.586 60.000 0.00 0.00 0.00 3.36
45 46 1.875963 CCAGCCACAAACCACGATC 59.124 57.895 0.00 0.00 0.00 3.69
46 47 2.268076 GCCAGCCACAAACCACGAT 61.268 57.895 0.00 0.00 0.00 3.73
47 48 2.904866 GCCAGCCACAAACCACGA 60.905 61.111 0.00 0.00 0.00 4.35
48 49 3.198236 CTGCCAGCCACAAACCACG 62.198 63.158 0.00 0.00 0.00 4.94
49 50 2.730094 CTGCCAGCCACAAACCAC 59.270 61.111 0.00 0.00 0.00 4.16
50 51 2.000825 TACCTGCCAGCCACAAACCA 62.001 55.000 0.00 0.00 0.00 3.67
51 52 0.611896 ATACCTGCCAGCCACAAACC 60.612 55.000 0.00 0.00 0.00 3.27
52 53 0.527565 CATACCTGCCAGCCACAAAC 59.472 55.000 0.00 0.00 0.00 2.93
53 54 0.611618 CCATACCTGCCAGCCACAAA 60.612 55.000 0.00 0.00 0.00 2.83
54 55 1.001020 CCATACCTGCCAGCCACAA 60.001 57.895 0.00 0.00 0.00 3.33
55 56 1.788518 AACCATACCTGCCAGCCACA 61.789 55.000 0.00 0.00 0.00 4.17
56 57 0.611896 AAACCATACCTGCCAGCCAC 60.612 55.000 0.00 0.00 0.00 5.01
57 58 0.323360 GAAACCATACCTGCCAGCCA 60.323 55.000 0.00 0.00 0.00 4.75
58 59 1.037579 GGAAACCATACCTGCCAGCC 61.038 60.000 0.00 0.00 0.00 4.85
59 60 0.034089 AGGAAACCATACCTGCCAGC 60.034 55.000 0.00 0.00 34.99 4.85
60 61 1.408822 GGAGGAAACCATACCTGCCAG 60.409 57.143 0.00 0.00 38.41 4.85
61 62 0.623723 GGAGGAAACCATACCTGCCA 59.376 55.000 0.00 0.00 38.41 4.92
62 63 0.919710 AGGAGGAAACCATACCTGCC 59.080 55.000 0.00 0.00 43.91 4.85
63 64 1.134068 GGAGGAGGAAACCATACCTGC 60.134 57.143 0.00 0.00 43.35 4.85
64 65 1.139058 CGGAGGAGGAAACCATACCTG 59.861 57.143 0.00 0.00 36.57 4.00
65 66 1.007963 TCGGAGGAGGAAACCATACCT 59.992 52.381 0.00 0.00 39.41 3.08
66 67 1.138464 GTCGGAGGAGGAAACCATACC 59.862 57.143 0.00 0.00 0.00 2.73
67 68 1.202382 CGTCGGAGGAGGAAACCATAC 60.202 57.143 0.00 0.00 0.00 2.39
68 69 1.108776 CGTCGGAGGAGGAAACCATA 58.891 55.000 0.00 0.00 0.00 2.74
69 70 0.903454 ACGTCGGAGGAGGAAACCAT 60.903 55.000 4.48 0.00 0.00 3.55
70 71 1.530013 GACGTCGGAGGAGGAAACCA 61.530 60.000 0.00 0.00 0.00 3.67
71 72 1.214853 GACGTCGGAGGAGGAAACC 59.785 63.158 0.00 0.00 0.00 3.27
72 73 0.602060 AAGACGTCGGAGGAGGAAAC 59.398 55.000 10.46 0.00 0.00 2.78
73 74 2.089980 CTAAGACGTCGGAGGAGGAAA 58.910 52.381 10.46 0.00 0.00 3.13
74 75 1.004044 ACTAAGACGTCGGAGGAGGAA 59.996 52.381 19.69 0.00 0.00 3.36
75 76 0.617413 ACTAAGACGTCGGAGGAGGA 59.383 55.000 19.69 0.00 0.00 3.71
76 77 1.015868 GACTAAGACGTCGGAGGAGG 58.984 60.000 19.69 7.23 0.00 4.30
84 85 1.513586 CCCGCACGACTAAGACGTC 60.514 63.158 7.70 7.70 42.07 4.34
85 86 2.564975 CCCGCACGACTAAGACGT 59.435 61.111 0.00 0.00 44.83 4.34
86 87 2.202570 CCCCGCACGACTAAGACG 60.203 66.667 0.00 0.00 0.00 4.18
87 88 2.183555 CCCCCGCACGACTAAGAC 59.816 66.667 0.00 0.00 0.00 3.01
88 89 2.283388 ACCCCCGCACGACTAAGA 60.283 61.111 0.00 0.00 0.00 2.10
89 90 2.125673 CACCCCCGCACGACTAAG 60.126 66.667 0.00 0.00 0.00 2.18
90 91 4.382320 GCACCCCCGCACGACTAA 62.382 66.667 0.00 0.00 0.00 2.24
101 102 1.415672 TTATCCCGATCTGGCACCCC 61.416 60.000 0.00 0.00 35.87 4.95
102 103 0.472471 TTTATCCCGATCTGGCACCC 59.528 55.000 0.00 0.00 35.87 4.61
103 104 2.154462 CATTTATCCCGATCTGGCACC 58.846 52.381 0.00 0.00 35.87 5.01
104 105 2.154462 CCATTTATCCCGATCTGGCAC 58.846 52.381 0.00 0.00 35.87 5.01
105 106 1.545428 GCCATTTATCCCGATCTGGCA 60.545 52.381 12.15 0.00 46.54 4.92
106 107 1.168714 GCCATTTATCCCGATCTGGC 58.831 55.000 2.95 2.95 42.00 4.85
107 108 1.270839 ACGCCATTTATCCCGATCTGG 60.271 52.381 0.00 0.00 37.55 3.86
108 109 1.800586 CACGCCATTTATCCCGATCTG 59.199 52.381 0.00 0.00 0.00 2.90
109 110 1.416401 ACACGCCATTTATCCCGATCT 59.584 47.619 0.00 0.00 0.00 2.75
110 111 1.798813 GACACGCCATTTATCCCGATC 59.201 52.381 0.00 0.00 0.00 3.69
111 112 1.542547 GGACACGCCATTTATCCCGAT 60.543 52.381 0.00 0.00 36.34 4.18
112 113 0.179067 GGACACGCCATTTATCCCGA 60.179 55.000 0.00 0.00 36.34 5.14
113 114 1.495584 CGGACACGCCATTTATCCCG 61.496 60.000 0.00 0.00 35.94 5.14
114 115 1.164041 CCGGACACGCCATTTATCCC 61.164 60.000 0.00 0.00 39.22 3.85
115 116 1.164041 CCCGGACACGCCATTTATCC 61.164 60.000 0.73 0.00 39.22 2.59
116 117 1.164041 CCCCGGACACGCCATTTATC 61.164 60.000 0.73 0.00 39.22 1.75
117 118 1.153046 CCCCGGACACGCCATTTAT 60.153 57.895 0.73 0.00 39.22 1.40
118 119 2.269562 CCCCGGACACGCCATTTA 59.730 61.111 0.73 0.00 39.22 1.40
119 120 3.961414 ACCCCGGACACGCCATTT 61.961 61.111 0.73 0.00 39.22 2.32
120 121 4.715523 CACCCCGGACACGCCATT 62.716 66.667 0.73 0.00 39.22 3.16
135 136 2.764637 AATCAGACCCGGGGCAACAC 62.765 60.000 32.91 10.45 39.74 3.32
136 137 2.478335 GAATCAGACCCGGGGCAACA 62.478 60.000 32.91 12.57 39.74 3.33
137 138 1.749258 GAATCAGACCCGGGGCAAC 60.749 63.158 32.91 15.08 0.00 4.17
138 139 2.674754 GAATCAGACCCGGGGCAA 59.325 61.111 32.91 17.96 0.00 4.52
139 140 3.781307 CGAATCAGACCCGGGGCA 61.781 66.667 32.91 9.72 0.00 5.36
140 141 3.325201 AACGAATCAGACCCGGGGC 62.325 63.158 27.92 25.65 0.00 5.80
141 142 1.153429 GAACGAATCAGACCCGGGG 60.153 63.158 27.92 12.73 0.00 5.73
142 143 0.036765 TTGAACGAATCAGACCCGGG 60.037 55.000 22.25 22.25 39.77 5.73
143 144 1.076332 GTTGAACGAATCAGACCCGG 58.924 55.000 0.00 0.00 39.77 5.73
144 145 0.713883 CGTTGAACGAATCAGACCCG 59.286 55.000 13.13 0.00 46.05 5.28
145 146 1.076332 CCGTTGAACGAATCAGACCC 58.924 55.000 20.47 0.00 46.05 4.46
146 147 0.442699 GCCGTTGAACGAATCAGACC 59.557 55.000 20.47 0.00 46.05 3.85
147 148 1.144969 TGCCGTTGAACGAATCAGAC 58.855 50.000 20.47 0.22 46.05 3.51
148 149 1.872388 TTGCCGTTGAACGAATCAGA 58.128 45.000 20.47 3.17 46.05 3.27
149 150 2.508867 CATTGCCGTTGAACGAATCAG 58.491 47.619 20.47 2.74 46.05 2.90
150 151 1.198867 CCATTGCCGTTGAACGAATCA 59.801 47.619 20.47 10.86 46.05 2.57
151 152 1.199097 ACCATTGCCGTTGAACGAATC 59.801 47.619 20.47 8.33 46.05 2.52
152 153 1.243902 ACCATTGCCGTTGAACGAAT 58.756 45.000 20.47 9.02 46.05 3.34
153 154 1.025812 AACCATTGCCGTTGAACGAA 58.974 45.000 20.47 6.81 46.05 3.85
154 155 1.002251 GAAACCATTGCCGTTGAACGA 60.002 47.619 20.47 0.00 46.05 3.85
155 156 1.404477 GAAACCATTGCCGTTGAACG 58.596 50.000 11.30 11.30 42.11 3.95
156 157 1.404477 CGAAACCATTGCCGTTGAAC 58.596 50.000 0.00 0.00 0.00 3.18
157 158 0.318275 GCGAAACCATTGCCGTTGAA 60.318 50.000 0.00 0.00 0.00 2.69
158 159 1.284408 GCGAAACCATTGCCGTTGA 59.716 52.632 0.00 0.00 0.00 3.18
159 160 0.388391 ATGCGAAACCATTGCCGTTG 60.388 50.000 0.00 0.00 0.00 4.10
160 161 0.316841 AATGCGAAACCATTGCCGTT 59.683 45.000 0.00 0.00 34.32 4.44
161 162 0.316841 AAATGCGAAACCATTGCCGT 59.683 45.000 0.00 0.00 35.70 5.68
162 163 0.714994 CAAATGCGAAACCATTGCCG 59.285 50.000 0.00 0.00 35.70 5.69
163 164 1.794512 ACAAATGCGAAACCATTGCC 58.205 45.000 0.00 0.00 35.70 4.52
164 165 2.799412 TCAACAAATGCGAAACCATTGC 59.201 40.909 0.00 0.00 35.70 3.56
165 166 3.120923 GCTCAACAAATGCGAAACCATTG 60.121 43.478 0.00 0.00 35.70 2.82
166 167 3.059166 GCTCAACAAATGCGAAACCATT 58.941 40.909 0.00 0.00 37.03 3.16
167 168 2.610232 GGCTCAACAAATGCGAAACCAT 60.610 45.455 0.00 0.00 0.00 3.55
168 169 1.269517 GGCTCAACAAATGCGAAACCA 60.270 47.619 0.00 0.00 0.00 3.67
169 170 1.269517 TGGCTCAACAAATGCGAAACC 60.270 47.619 0.00 0.00 0.00 3.27
170 171 1.786579 GTGGCTCAACAAATGCGAAAC 59.213 47.619 0.00 0.00 0.00 2.78
171 172 1.269517 GGTGGCTCAACAAATGCGAAA 60.270 47.619 0.00 0.00 0.00 3.46
172 173 0.313672 GGTGGCTCAACAAATGCGAA 59.686 50.000 0.00 0.00 0.00 4.70
173 174 0.537143 AGGTGGCTCAACAAATGCGA 60.537 50.000 0.00 0.00 0.00 5.10
174 175 0.314935 AAGGTGGCTCAACAAATGCG 59.685 50.000 0.00 0.00 0.00 4.73
175 176 1.340889 TCAAGGTGGCTCAACAAATGC 59.659 47.619 0.00 0.00 0.00 3.56
176 177 3.553508 CCTTCAAGGTGGCTCAACAAATG 60.554 47.826 0.00 0.00 0.00 2.32
177 178 2.629617 CCTTCAAGGTGGCTCAACAAAT 59.370 45.455 0.00 0.00 0.00 2.32
178 179 2.031120 CCTTCAAGGTGGCTCAACAAA 58.969 47.619 0.00 0.00 0.00 2.83
179 180 1.691196 CCTTCAAGGTGGCTCAACAA 58.309 50.000 0.00 0.00 0.00 2.83
180 181 3.419793 CCTTCAAGGTGGCTCAACA 57.580 52.632 0.00 0.00 0.00 3.33
190 191 0.890996 AGCTTTGCGGACCTTCAAGG 60.891 55.000 0.22 0.22 42.49 3.61
191 192 0.239347 CAGCTTTGCGGACCTTCAAG 59.761 55.000 0.00 0.00 0.00 3.02
192 193 1.172180 CCAGCTTTGCGGACCTTCAA 61.172 55.000 0.00 0.00 0.00 2.69
193 194 1.600636 CCAGCTTTGCGGACCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
194 195 0.678048 ATCCAGCTTTGCGGACCTTC 60.678 55.000 0.00 0.00 35.11 3.46
195 196 0.618458 TATCCAGCTTTGCGGACCTT 59.382 50.000 0.00 0.00 35.11 3.50
196 197 0.839946 ATATCCAGCTTTGCGGACCT 59.160 50.000 0.00 0.00 35.11 3.85
197 198 1.202698 AGATATCCAGCTTTGCGGACC 60.203 52.381 0.00 0.00 35.11 4.46
198 199 1.869767 CAGATATCCAGCTTTGCGGAC 59.130 52.381 0.00 0.00 35.11 4.79
199 200 1.811558 GCAGATATCCAGCTTTGCGGA 60.812 52.381 9.79 0.00 36.22 5.54
200 201 0.590195 GCAGATATCCAGCTTTGCGG 59.410 55.000 9.79 0.00 0.00 5.69
201 202 0.234106 CGCAGATATCCAGCTTTGCG 59.766 55.000 16.95 16.95 46.41 4.85
202 203 1.586422 TCGCAGATATCCAGCTTTGC 58.414 50.000 13.84 8.70 0.00 3.68
203 204 2.483106 CCATCGCAGATATCCAGCTTTG 59.517 50.000 13.84 10.91 45.12 2.77
204 205 2.369860 TCCATCGCAGATATCCAGCTTT 59.630 45.455 13.84 1.43 45.12 3.51
205 206 1.973515 TCCATCGCAGATATCCAGCTT 59.026 47.619 13.84 1.72 45.12 3.74
206 207 1.549620 CTCCATCGCAGATATCCAGCT 59.450 52.381 13.84 0.00 45.12 4.24
207 208 2.006056 GCTCCATCGCAGATATCCAGC 61.006 57.143 0.00 3.37 45.12 4.85
208 209 1.405256 GGCTCCATCGCAGATATCCAG 60.405 57.143 0.00 0.00 45.12 3.86
209 210 0.610174 GGCTCCATCGCAGATATCCA 59.390 55.000 0.00 0.00 45.12 3.41
210 211 0.459237 CGGCTCCATCGCAGATATCC 60.459 60.000 0.00 0.00 45.12 2.59
211 212 3.041874 CGGCTCCATCGCAGATATC 57.958 57.895 0.00 0.00 45.12 1.63
233 234 2.415010 CCTCATCACCCGAGCTCG 59.585 66.667 29.06 29.06 39.44 5.03
234 235 1.142748 CACCTCATCACCCGAGCTC 59.857 63.158 2.73 2.73 0.00 4.09
235 236 0.689080 ATCACCTCATCACCCGAGCT 60.689 55.000 0.00 0.00 0.00 4.09
236 237 0.249657 GATCACCTCATCACCCGAGC 60.250 60.000 0.00 0.00 0.00 5.03
237 238 0.390860 GGATCACCTCATCACCCGAG 59.609 60.000 0.00 0.00 0.00 4.63
238 239 1.391933 CGGATCACCTCATCACCCGA 61.392 60.000 0.00 0.00 37.87 5.14
239 240 1.068083 CGGATCACCTCATCACCCG 59.932 63.158 0.00 0.00 0.00 5.28
240 241 0.105039 GACGGATCACCTCATCACCC 59.895 60.000 0.00 0.00 0.00 4.61
241 242 0.824109 TGACGGATCACCTCATCACC 59.176 55.000 0.00 0.00 0.00 4.02
242 243 2.672961 TTGACGGATCACCTCATCAC 57.327 50.000 0.00 0.00 33.38 3.06
243 244 3.912496 ATTTGACGGATCACCTCATCA 57.088 42.857 0.00 0.00 33.38 3.07
244 245 5.449177 GGAAAATTTGACGGATCACCTCATC 60.449 44.000 0.00 0.00 33.38 2.92
245 246 4.399303 GGAAAATTTGACGGATCACCTCAT 59.601 41.667 0.00 0.00 33.38 2.90
246 247 3.756434 GGAAAATTTGACGGATCACCTCA 59.244 43.478 0.00 0.00 33.38 3.86
247 248 4.010349 AGGAAAATTTGACGGATCACCTC 58.990 43.478 0.00 0.00 33.38 3.85
248 249 4.034285 AGGAAAATTTGACGGATCACCT 57.966 40.909 0.00 0.00 33.38 4.00
249 250 4.783764 AAGGAAAATTTGACGGATCACC 57.216 40.909 0.00 0.00 33.38 4.02
250 251 5.768317 TCAAAGGAAAATTTGACGGATCAC 58.232 37.500 0.00 0.00 42.68 3.06
259 260 6.411492 CGCAACAACAATCAAAGGAAAATTTG 59.589 34.615 0.00 0.00 40.75 2.32
260 261 6.458070 CCGCAACAACAATCAAAGGAAAATTT 60.458 34.615 0.00 0.00 0.00 1.82
261 262 5.007528 CCGCAACAACAATCAAAGGAAAATT 59.992 36.000 0.00 0.00 0.00 1.82
262 263 4.511082 CCGCAACAACAATCAAAGGAAAAT 59.489 37.500 0.00 0.00 0.00 1.82
263 264 3.868077 CCGCAACAACAATCAAAGGAAAA 59.132 39.130 0.00 0.00 0.00 2.29
264 265 3.118956 ACCGCAACAACAATCAAAGGAAA 60.119 39.130 0.00 0.00 0.00 3.13
265 266 2.428890 ACCGCAACAACAATCAAAGGAA 59.571 40.909 0.00 0.00 0.00 3.36
266 267 2.028130 ACCGCAACAACAATCAAAGGA 58.972 42.857 0.00 0.00 0.00 3.36
267 268 2.507339 ACCGCAACAACAATCAAAGG 57.493 45.000 0.00 0.00 0.00 3.11
268 269 3.974401 CACTACCGCAACAACAATCAAAG 59.026 43.478 0.00 0.00 0.00 2.77
269 270 3.793801 GCACTACCGCAACAACAATCAAA 60.794 43.478 0.00 0.00 0.00 2.69
270 271 2.287308 GCACTACCGCAACAACAATCAA 60.287 45.455 0.00 0.00 0.00 2.57
271 272 1.265635 GCACTACCGCAACAACAATCA 59.734 47.619 0.00 0.00 0.00 2.57
272 273 1.401018 GGCACTACCGCAACAACAATC 60.401 52.381 0.00 0.00 0.00 2.67
273 274 0.596082 GGCACTACCGCAACAACAAT 59.404 50.000 0.00 0.00 0.00 2.71
274 275 2.026522 GGCACTACCGCAACAACAA 58.973 52.632 0.00 0.00 0.00 2.83
275 276 3.739167 GGCACTACCGCAACAACA 58.261 55.556 0.00 0.00 0.00 3.33
291 292 2.383527 GCTTGTCGTCTGCCTTCGG 61.384 63.158 0.00 0.00 0.00 4.30
292 293 2.720758 CGCTTGTCGTCTGCCTTCG 61.721 63.158 0.00 0.00 0.00 3.79
293 294 3.159984 CGCTTGTCGTCTGCCTTC 58.840 61.111 0.00 0.00 0.00 3.46
302 303 1.201921 GCTTGATACCAACGCTTGTCG 60.202 52.381 0.00 0.00 45.38 4.35
303 304 2.076863 AGCTTGATACCAACGCTTGTC 58.923 47.619 0.00 0.00 35.06 3.18
304 305 2.185004 AGCTTGATACCAACGCTTGT 57.815 45.000 0.00 0.00 35.06 3.16
305 306 3.063997 CCTAAGCTTGATACCAACGCTTG 59.936 47.826 9.86 6.62 41.82 4.01
306 307 3.055385 TCCTAAGCTTGATACCAACGCTT 60.055 43.478 9.86 10.24 42.98 4.68
307 308 2.500098 TCCTAAGCTTGATACCAACGCT 59.500 45.455 9.86 0.00 37.92 5.07
308 309 2.866762 CTCCTAAGCTTGATACCAACGC 59.133 50.000 9.86 0.00 0.00 4.84
309 310 4.386867 TCTCCTAAGCTTGATACCAACG 57.613 45.455 9.86 0.00 0.00 4.10
310 311 7.631717 AAAATCTCCTAAGCTTGATACCAAC 57.368 36.000 9.86 0.00 0.00 3.77
356 357 4.703093 GCCCATAGTAGTACAAGCCAAAAA 59.297 41.667 2.52 0.00 0.00 1.94
357 358 4.266714 GCCCATAGTAGTACAAGCCAAAA 58.733 43.478 2.52 0.00 0.00 2.44
358 359 3.371166 GGCCCATAGTAGTACAAGCCAAA 60.371 47.826 2.52 0.00 39.01 3.28
359 360 2.171870 GGCCCATAGTAGTACAAGCCAA 59.828 50.000 2.52 0.00 39.01 4.52
365 366 3.990369 AGAACTGGCCCATAGTAGTACA 58.010 45.455 0.00 0.00 0.00 2.90
379 380 1.152355 TTGGCCCCCAAAGAACTGG 60.152 57.895 0.00 0.00 40.92 4.00
380 381 0.469892 AGTTGGCCCCCAAAGAACTG 60.470 55.000 0.00 0.00 45.73 3.16
389 390 1.275666 AAATAAGCAAGTTGGCCCCC 58.724 50.000 0.00 0.00 0.00 5.40
394 395 5.537188 TGGCTGTAAAAATAAGCAAGTTGG 58.463 37.500 4.75 0.00 38.73 3.77
413 414 3.245052 ACTTTTGAGTCTTATGGCTGGCT 60.245 43.478 2.00 0.00 0.00 4.75
415 416 6.599244 TCATAACTTTTGAGTCTTATGGCTGG 59.401 38.462 8.44 0.00 30.60 4.85
468 469 6.183360 TGCATGGACACTTCTTTGAGAATTTT 60.183 34.615 0.00 0.00 33.13 1.82
470 471 4.828939 TGCATGGACACTTCTTTGAGAATT 59.171 37.500 0.00 0.00 33.13 2.17
474 475 3.144506 ACTGCATGGACACTTCTTTGAG 58.855 45.455 0.00 0.00 0.00 3.02
475 476 3.213206 ACTGCATGGACACTTCTTTGA 57.787 42.857 0.00 0.00 0.00 2.69
476 477 3.996150 AACTGCATGGACACTTCTTTG 57.004 42.857 0.00 0.00 0.00 2.77
477 478 4.210331 AGAAACTGCATGGACACTTCTTT 58.790 39.130 0.00 0.00 0.00 2.52
578 1344 2.798445 TAGCGGGACTCCAGGCTTCA 62.798 60.000 15.75 0.00 36.50 3.02
598 1364 1.155889 TTCGTGATCCATGTGTGTGC 58.844 50.000 0.00 0.00 0.00 4.57
809 1575 5.121298 GCGACCGTGAGATATAGTATGTGTA 59.879 44.000 0.00 0.00 0.00 2.90
810 1576 4.083431 GCGACCGTGAGATATAGTATGTGT 60.083 45.833 0.00 0.00 0.00 3.72
815 1583 2.071540 CGGCGACCGTGAGATATAGTA 58.928 52.381 0.00 0.00 42.73 1.82
817 1585 3.677960 CGGCGACCGTGAGATATAG 57.322 57.895 0.00 0.00 42.73 1.31
881 1649 2.509964 AGGTTTGTGGAGAAAGAGTGGT 59.490 45.455 0.00 0.00 0.00 4.16
925 1705 0.179156 GATCAATGGTGCTTGCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
926 1706 0.608856 TGATCAATGGTGCTTGCGGT 60.609 50.000 0.00 0.00 0.00 5.68
931 1711 3.245016 TGAGAAGGTGATCAATGGTGCTT 60.245 43.478 0.00 0.00 0.00 3.91
932 1712 2.306805 TGAGAAGGTGATCAATGGTGCT 59.693 45.455 0.00 0.00 0.00 4.40
991 1771 2.045340 GCCCGCCATTACCACTGT 60.045 61.111 0.00 0.00 0.00 3.55
1293 2073 4.947147 AAAAGCACGCCCTCGCCA 62.947 61.111 0.00 0.00 39.84 5.69
1425 2205 1.539124 AAAGAGGAGGAGCGGGGTT 60.539 57.895 0.00 0.00 0.00 4.11
1431 2211 2.835156 AGTTACCTGAAAGAGGAGGAGC 59.165 50.000 0.00 0.00 46.33 4.70
1443 2223 4.274950 CGAAAGAAAGGCAAAGTTACCTGA 59.725 41.667 0.00 0.00 36.07 3.86
1473 2253 3.417321 CACAAACATGCGTTAGTGTTTCG 59.583 43.478 0.00 1.36 44.27 3.46
1539 2328 2.028484 GGCGTGTCACCTGAACGA 59.972 61.111 11.63 0.00 39.64 3.85
1939 2728 3.823330 ATCACCTCGTCGGCGTCC 61.823 66.667 10.18 0.00 39.49 4.79
2094 2883 2.509336 CCAGCTTCACGGCGTAGG 60.509 66.667 14.22 6.97 37.29 3.18
2239 3028 1.005394 GAAGTCCAGGTCGCCGAAA 60.005 57.895 0.00 0.00 0.00 3.46
2464 3253 1.971481 CAGATTTGATCATGGCGGGA 58.029 50.000 0.00 0.00 0.00 5.14
2575 3365 1.410004 CAGATGTAGAGGCCGGGTTA 58.590 55.000 2.18 0.00 0.00 2.85
2576 3366 1.338136 CCAGATGTAGAGGCCGGGTT 61.338 60.000 2.18 0.00 0.00 4.11
2706 3501 1.890979 CAGCTAGCGCCCCTTCATG 60.891 63.158 9.55 0.00 36.60 3.07
2751 3547 3.650281 TCTGGCTTTTGATGATAGGCA 57.350 42.857 0.00 0.00 41.46 4.75
2957 3787 2.574955 GGTGCAGTGGAGACTCGGT 61.575 63.158 0.00 0.00 0.00 4.69
2992 3822 2.093553 TCATCCTGCACATTGATGACGA 60.094 45.455 8.58 0.00 39.81 4.20
3015 3845 4.988744 TTTTTGGTGGAGCGGTGA 57.011 50.000 0.00 0.00 0.00 4.02
3049 3881 2.981560 GCGTACACGGGTTCGAGGA 61.982 63.158 21.52 0.00 39.80 3.71
3070 3902 0.322456 CTTGGGGGCGTCATTCTTGA 60.322 55.000 0.00 0.00 0.00 3.02
3144 3976 0.885196 CTCTATCTGCTACCTCCGGC 59.115 60.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.