Multiple sequence alignment - TraesCS1D01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G164200 chr1D 100.000 4259 0 0 1 4259 234905800 234910058 0.000000e+00 7866.0
1 TraesCS1D01G164200 chr1B 91.050 2380 151 30 1667 3997 340464140 340466506 0.000000e+00 3158.0
2 TraesCS1D01G164200 chr1B 85.736 645 46 20 803 1423 340463458 340464080 1.290000e-179 640.0
3 TraesCS1D01G164200 chr1B 84.807 362 20 11 3917 4259 340466648 340466993 8.830000e-87 331.0
4 TraesCS1D01G164200 chr1B 84.106 151 20 3 1526 1672 491543495 491543345 4.440000e-30 143.0
5 TraesCS1D01G164200 chr1A 89.778 2162 159 30 2001 4130 312586229 312584098 0.000000e+00 2712.0
6 TraesCS1D01G164200 chr1A 95.736 727 28 3 1 725 76767744 76767019 0.000000e+00 1168.0
7 TraesCS1D01G164200 chr1A 85.047 749 30 29 719 1418 312608093 312607378 0.000000e+00 688.0
8 TraesCS1D01G164200 chr1A 85.794 359 18 15 3920 4258 312584103 312583758 2.440000e-92 350.0
9 TraesCS1D01G164200 chr1A 82.192 365 36 16 1670 2005 312607254 312606890 1.940000e-73 287.0
10 TraesCS1D01G164200 chr1A 90.526 95 9 0 1418 1512 312607350 312607256 4.470000e-25 126.0
11 TraesCS1D01G164200 chr1A 91.566 83 5 2 1599 1680 534913828 534913747 3.480000e-21 113.0
12 TraesCS1D01G164200 chr6D 96.379 718 24 1 1 718 55635736 55635021 0.000000e+00 1181.0
13 TraesCS1D01G164200 chr6D 96.127 723 25 1 1 723 383599721 383600440 0.000000e+00 1177.0
14 TraesCS1D01G164200 chr6D 85.000 120 14 2 1554 1669 467855249 467855368 7.480000e-23 119.0
15 TraesCS1D01G164200 chr2A 95.994 724 28 1 1 724 422559208 422559930 0.000000e+00 1175.0
16 TraesCS1D01G164200 chr7D 96.117 721 25 1 1 721 414295108 414294391 0.000000e+00 1173.0
17 TraesCS1D01G164200 chr7D 86.000 100 11 3 1587 1683 461660813 461660912 2.090000e-18 104.0
18 TraesCS1D01G164200 chr7D 83.784 111 11 5 1554 1664 257517605 257517502 9.750000e-17 99.0
19 TraesCS1D01G164200 chr5D 95.972 720 25 3 1 719 167754813 167755529 0.000000e+00 1166.0
20 TraesCS1D01G164200 chr5D 95.700 721 28 1 1 721 352236529 352237246 0.000000e+00 1157.0
21 TraesCS1D01G164200 chr5D 96.000 75 3 0 1599 1673 241274777 241274851 5.780000e-24 122.0
22 TraesCS1D01G164200 chr4D 95.455 726 30 3 1 726 381423162 381422440 0.000000e+00 1155.0
23 TraesCS1D01G164200 chr3D 95.694 720 26 3 1 720 94759924 94760638 0.000000e+00 1153.0
24 TraesCS1D01G164200 chr6B 83.893 149 15 3 1530 1669 585810853 585811001 2.670000e-27 134.0
25 TraesCS1D01G164200 chr6B 81.707 164 8 3 1530 1671 232734819 232734982 2.690000e-22 117.0
26 TraesCS1D01G164200 chr2D 84.397 141 13 5 1530 1665 410409407 410409543 3.460000e-26 130.0
27 TraesCS1D01G164200 chrUn 84.545 110 13 4 1572 1677 100229681 100229572 5.820000e-19 106.0
28 TraesCS1D01G164200 chr4B 79.878 164 10 4 1529 1669 182666354 182666191 9.750000e-17 99.0
29 TraesCS1D01G164200 chr3B 88.608 79 4 4 1529 1603 988074 987997 1.630000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G164200 chr1D 234905800 234910058 4258 False 7866.000000 7866 100.000000 1 4259 1 chr1D.!!$F1 4258
1 TraesCS1D01G164200 chr1B 340463458 340466993 3535 False 1376.333333 3158 87.197667 803 4259 3 chr1B.!!$F1 3456
2 TraesCS1D01G164200 chr1A 312583758 312586229 2471 True 1531.000000 2712 87.786000 2001 4258 2 chr1A.!!$R3 2257
3 TraesCS1D01G164200 chr1A 76767019 76767744 725 True 1168.000000 1168 95.736000 1 725 1 chr1A.!!$R1 724
4 TraesCS1D01G164200 chr1A 312606890 312608093 1203 True 367.000000 688 85.921667 719 2005 3 chr1A.!!$R4 1286
5 TraesCS1D01G164200 chr6D 55635021 55635736 715 True 1181.000000 1181 96.379000 1 718 1 chr6D.!!$R1 717
6 TraesCS1D01G164200 chr6D 383599721 383600440 719 False 1177.000000 1177 96.127000 1 723 1 chr6D.!!$F1 722
7 TraesCS1D01G164200 chr2A 422559208 422559930 722 False 1175.000000 1175 95.994000 1 724 1 chr2A.!!$F1 723
8 TraesCS1D01G164200 chr7D 414294391 414295108 717 True 1173.000000 1173 96.117000 1 721 1 chr7D.!!$R2 720
9 TraesCS1D01G164200 chr5D 167754813 167755529 716 False 1166.000000 1166 95.972000 1 719 1 chr5D.!!$F1 718
10 TraesCS1D01G164200 chr5D 352236529 352237246 717 False 1157.000000 1157 95.700000 1 721 1 chr5D.!!$F3 720
11 TraesCS1D01G164200 chr4D 381422440 381423162 722 True 1155.000000 1155 95.455000 1 726 1 chr4D.!!$R1 725
12 TraesCS1D01G164200 chr3D 94759924 94760638 714 False 1153.000000 1153 95.694000 1 720 1 chr3D.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 954 1.610673 ACGCTCATGGACTGGACCT 60.611 57.895 0.00 0.00 0.00 3.85 F
1305 1362 0.252197 GTTAATGGTGGCGTCCTCCT 59.748 55.000 15.01 2.69 37.97 3.69 F
2378 2518 0.400213 TGGGAGTCACCGAATTGCTT 59.600 50.000 0.00 0.00 40.11 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2493 0.834261 TTCGGTGACTCCCATGGTGA 60.834 55.0 11.73 6.87 0.00 4.02 R
3037 3191 0.179073 GCCAGCACATAGACCACGAT 60.179 55.0 0.00 0.00 0.00 3.73 R
4088 4511 0.685458 AATGGCCAAGATGGTCCAGC 60.685 55.0 10.96 0.00 42.76 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 256 2.307098 AGGAGCATTACCTTCAAGCTGT 59.693 45.455 0.00 0.00 35.36 4.40
439 440 2.047655 GAACCGCACACGATGGGA 60.048 61.111 9.43 0.00 43.98 4.37
644 646 1.859383 TCGTGTCAAGATTCGTGCAA 58.141 45.000 0.00 0.00 0.00 4.08
769 771 5.721480 TGATCCAAGAGAACATCAGTAGGAA 59.279 40.000 0.00 0.00 0.00 3.36
771 773 4.223032 TCCAAGAGAACATCAGTAGGAACC 59.777 45.833 0.00 0.00 0.00 3.62
772 774 4.508662 CAAGAGAACATCAGTAGGAACCC 58.491 47.826 0.00 0.00 0.00 4.11
774 776 3.515901 AGAGAACATCAGTAGGAACCCAC 59.484 47.826 0.00 0.00 0.00 4.61
775 777 3.248024 AGAACATCAGTAGGAACCCACA 58.752 45.455 0.00 0.00 0.00 4.17
776 778 3.846588 AGAACATCAGTAGGAACCCACAT 59.153 43.478 0.00 0.00 0.00 3.21
777 779 4.289672 AGAACATCAGTAGGAACCCACATT 59.710 41.667 0.00 0.00 0.00 2.71
778 780 5.487488 AGAACATCAGTAGGAACCCACATTA 59.513 40.000 0.00 0.00 0.00 1.90
779 781 5.772393 ACATCAGTAGGAACCCACATTAA 57.228 39.130 0.00 0.00 0.00 1.40
781 783 5.013704 ACATCAGTAGGAACCCACATTAACA 59.986 40.000 0.00 0.00 0.00 2.41
782 784 5.160607 TCAGTAGGAACCCACATTAACAG 57.839 43.478 0.00 0.00 0.00 3.16
784 786 5.308497 TCAGTAGGAACCCACATTAACAGAA 59.692 40.000 0.00 0.00 0.00 3.02
785 787 6.001460 CAGTAGGAACCCACATTAACAGAAA 58.999 40.000 0.00 0.00 0.00 2.52
786 788 6.149474 CAGTAGGAACCCACATTAACAGAAAG 59.851 42.308 0.00 0.00 0.00 2.62
787 789 5.061721 AGGAACCCACATTAACAGAAAGT 57.938 39.130 0.00 0.00 0.00 2.66
788 790 5.454966 AGGAACCCACATTAACAGAAAGTT 58.545 37.500 0.00 0.00 44.27 2.66
789 791 5.535030 AGGAACCCACATTAACAGAAAGTTC 59.465 40.000 0.00 0.00 41.64 3.01
790 792 5.535030 GGAACCCACATTAACAGAAAGTTCT 59.465 40.000 0.00 0.00 41.64 3.01
791 793 6.040504 GGAACCCACATTAACAGAAAGTTCTT 59.959 38.462 0.00 0.00 41.64 2.52
792 794 7.417456 GGAACCCACATTAACAGAAAGTTCTTT 60.417 37.037 0.00 0.00 41.64 2.52
793 795 8.528044 AACCCACATTAACAGAAAGTTCTTTA 57.472 30.769 0.00 0.00 41.64 1.85
794 796 7.937649 ACCCACATTAACAGAAAGTTCTTTAC 58.062 34.615 0.00 0.00 41.64 2.01
795 797 7.075741 CCCACATTAACAGAAAGTTCTTTACG 58.924 38.462 0.00 0.00 41.64 3.18
796 798 7.255001 CCCACATTAACAGAAAGTTCTTTACGT 60.255 37.037 0.00 0.00 41.64 3.57
797 799 8.767085 CCACATTAACAGAAAGTTCTTTACGTA 58.233 33.333 0.00 0.00 41.64 3.57
902 917 1.930656 AGGCCTGCCTACCAACCAT 60.931 57.895 9.42 0.00 46.14 3.55
939 954 1.610673 ACGCTCATGGACTGGACCT 60.611 57.895 0.00 0.00 0.00 3.85
966 989 5.953571 AGGAGTTTGACTTTACAAAGGGAT 58.046 37.500 6.66 0.00 39.83 3.85
967 990 6.373759 AGGAGTTTGACTTTACAAAGGGATT 58.626 36.000 6.66 0.00 39.83 3.01
968 991 7.523415 AGGAGTTTGACTTTACAAAGGGATTA 58.477 34.615 6.66 0.00 39.83 1.75
975 998 8.391075 TGACTTTACAAAGGGATTAAGACTTG 57.609 34.615 6.66 0.00 40.31 3.16
1159 1195 3.203040 ACGTAAGAACTACCCCCTAGCTA 59.797 47.826 0.00 0.00 43.62 3.32
1181 1221 1.473257 CCGTTGATGGATCGTGGATGT 60.473 52.381 0.00 0.00 0.00 3.06
1183 1223 2.738321 CGTTGATGGATCGTGGATGTGA 60.738 50.000 0.00 0.00 0.00 3.58
1192 1232 4.336433 GGATCGTGGATGTGACATTTCATT 59.664 41.667 0.00 0.00 33.11 2.57
1194 1234 3.689161 TCGTGGATGTGACATTTCATTCC 59.311 43.478 0.00 0.00 37.39 3.01
1199 1239 1.352687 TGTGACATTTCATTCCGGGGA 59.647 47.619 0.00 0.00 33.11 4.81
1200 1240 2.017049 GTGACATTTCATTCCGGGGAG 58.983 52.381 0.00 0.00 33.11 4.30
1201 1241 1.912731 TGACATTTCATTCCGGGGAGA 59.087 47.619 0.00 0.00 0.00 3.71
1202 1242 2.509548 TGACATTTCATTCCGGGGAGAT 59.490 45.455 0.00 0.00 0.00 2.75
1203 1243 2.880890 GACATTTCATTCCGGGGAGATG 59.119 50.000 15.59 15.59 33.29 2.90
1204 1244 1.610522 CATTTCATTCCGGGGAGATGC 59.389 52.381 0.00 0.00 0.00 3.91
1240 1280 7.092623 TGGTTAGGTAGGATCTTTAATTGCTGA 60.093 37.037 0.00 0.00 0.00 4.26
1253 1293 2.925578 TTGCTGAGAAATTCATGCCG 57.074 45.000 0.00 0.00 34.68 5.69
1304 1361 0.746923 GGTTAATGGTGGCGTCCTCC 60.747 60.000 9.26 9.26 37.65 4.30
1305 1362 0.252197 GTTAATGGTGGCGTCCTCCT 59.748 55.000 15.01 2.69 37.97 3.69
1306 1363 0.539986 TTAATGGTGGCGTCCTCCTC 59.460 55.000 15.01 0.00 37.97 3.71
1307 1364 1.335132 TAATGGTGGCGTCCTCCTCC 61.335 60.000 15.01 5.11 37.97 4.30
1464 1560 2.440409 TGGAAGATCTTTGCTGAAGGC 58.560 47.619 9.87 0.00 42.22 4.35
1472 1568 3.731089 TCTTTGCTGAAGGCCATTTTTG 58.269 40.909 5.01 0.00 40.92 2.44
1482 1578 7.360353 GCTGAAGGCCATTTTTGAAGTTTAATC 60.360 37.037 5.01 0.00 34.27 1.75
1485 1581 5.309282 AGGCCATTTTTGAAGTTTAATCCCA 59.691 36.000 5.01 0.00 0.00 4.37
1503 1599 5.985175 TCCCATGTAAATGTAATCCTGGA 57.015 39.130 0.00 0.00 0.00 3.86
1512 1608 8.158132 TGTAAATGTAATCCTGGAACACAAGTA 58.842 33.333 15.16 9.18 0.00 2.24
1513 1609 7.448748 AAATGTAATCCTGGAACACAAGTAC 57.551 36.000 15.16 0.77 0.00 2.73
1514 1610 5.818678 TGTAATCCTGGAACACAAGTACT 57.181 39.130 0.00 0.00 0.00 2.73
1515 1611 6.921486 TGTAATCCTGGAACACAAGTACTA 57.079 37.500 0.00 0.00 0.00 1.82
1516 1612 6.694447 TGTAATCCTGGAACACAAGTACTAC 58.306 40.000 0.00 0.00 0.00 2.73
1517 1613 4.820894 ATCCTGGAACACAAGTACTACC 57.179 45.455 0.00 0.00 0.00 3.18
1518 1614 3.853207 TCCTGGAACACAAGTACTACCT 58.147 45.455 0.00 0.00 0.00 3.08
1519 1615 5.001833 TCCTGGAACACAAGTACTACCTA 57.998 43.478 0.00 0.00 0.00 3.08
1520 1616 4.768968 TCCTGGAACACAAGTACTACCTAC 59.231 45.833 0.00 0.00 0.00 3.18
1521 1617 4.081807 CCTGGAACACAAGTACTACCTACC 60.082 50.000 0.00 0.00 0.00 3.18
1522 1618 4.744237 TGGAACACAAGTACTACCTACCT 58.256 43.478 0.00 0.00 0.00 3.08
1523 1619 5.891198 TGGAACACAAGTACTACCTACCTA 58.109 41.667 0.00 0.00 0.00 3.08
1524 1620 5.948162 TGGAACACAAGTACTACCTACCTAG 59.052 44.000 0.00 0.00 0.00 3.02
1525 1621 5.948758 GGAACACAAGTACTACCTACCTAGT 59.051 44.000 0.00 0.00 0.00 2.57
1526 1622 7.112779 GGAACACAAGTACTACCTACCTAGTA 58.887 42.308 0.00 0.00 0.00 1.82
1527 1623 7.066404 GGAACACAAGTACTACCTACCTAGTAC 59.934 44.444 0.00 8.01 45.18 2.73
1528 1624 6.418946 ACACAAGTACTACCTACCTAGTACC 58.581 44.000 11.27 0.00 45.65 3.34
1529 1625 6.216456 ACACAAGTACTACCTACCTAGTACCT 59.784 42.308 11.27 0.00 45.65 3.08
1530 1626 7.403231 ACACAAGTACTACCTACCTAGTACCTA 59.597 40.741 11.27 0.00 45.65 3.08
1531 1627 7.713073 CACAAGTACTACCTACCTAGTACCTAC 59.287 44.444 11.27 0.00 45.65 3.18
1532 1628 7.625682 ACAAGTACTACCTACCTAGTACCTACT 59.374 40.741 11.27 0.00 45.65 2.57
1533 1629 7.849322 AGTACTACCTACCTAGTACCTACTC 57.151 44.000 11.27 0.00 45.65 2.59
1534 1630 6.785466 AGTACTACCTACCTAGTACCTACTCC 59.215 46.154 11.27 0.00 45.65 3.85
1535 1631 4.910913 ACTACCTACCTAGTACCTACTCCC 59.089 50.000 0.00 0.00 37.73 4.30
1536 1632 4.033232 ACCTACCTAGTACCTACTCCCT 57.967 50.000 0.00 0.00 37.73 4.20
1537 1633 3.980022 ACCTACCTAGTACCTACTCCCTC 59.020 52.174 0.00 0.00 37.73 4.30
1538 1634 3.330405 CCTACCTAGTACCTACTCCCTCC 59.670 56.522 0.00 0.00 37.73 4.30
1539 1635 1.773653 ACCTAGTACCTACTCCCTCCG 59.226 57.143 0.00 0.00 37.73 4.63
1540 1636 1.773653 CCTAGTACCTACTCCCTCCGT 59.226 57.143 0.00 0.00 37.73 4.69
1541 1637 2.174424 CCTAGTACCTACTCCCTCCGTT 59.826 54.545 0.00 0.00 37.73 4.44
1542 1638 2.433662 AGTACCTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 0.00 3.95
1543 1639 1.064091 AGTACCTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 0.00 3.62
1544 1640 1.064091 GTACCTACTCCCTCCGTTCCT 60.064 57.143 0.00 0.00 0.00 3.36
1545 1641 1.302907 ACCTACTCCCTCCGTTCCTA 58.697 55.000 0.00 0.00 0.00 2.94
1546 1642 1.858246 ACCTACTCCCTCCGTTCCTAT 59.142 52.381 0.00 0.00 0.00 2.57
1547 1643 3.059097 ACCTACTCCCTCCGTTCCTATA 58.941 50.000 0.00 0.00 0.00 1.31
1548 1644 3.464833 ACCTACTCCCTCCGTTCCTATAA 59.535 47.826 0.00 0.00 0.00 0.98
1549 1645 4.080687 CCTACTCCCTCCGTTCCTATAAG 58.919 52.174 0.00 0.00 0.00 1.73
1550 1646 3.967467 ACTCCCTCCGTTCCTATAAGA 57.033 47.619 0.00 0.00 0.00 2.10
1551 1647 3.564264 ACTCCCTCCGTTCCTATAAGAC 58.436 50.000 0.00 0.00 0.00 3.01
1552 1648 2.892215 CTCCCTCCGTTCCTATAAGACC 59.108 54.545 0.00 0.00 0.00 3.85
1553 1649 2.517127 TCCCTCCGTTCCTATAAGACCT 59.483 50.000 0.00 0.00 0.00 3.85
1554 1650 3.052338 TCCCTCCGTTCCTATAAGACCTT 60.052 47.826 0.00 0.00 0.00 3.50
1555 1651 3.710165 CCCTCCGTTCCTATAAGACCTTT 59.290 47.826 0.00 0.00 0.00 3.11
1556 1652 4.163649 CCCTCCGTTCCTATAAGACCTTTT 59.836 45.833 0.00 0.00 0.00 2.27
1557 1653 5.364735 CCCTCCGTTCCTATAAGACCTTTTA 59.635 44.000 0.00 0.00 0.00 1.52
1558 1654 6.462628 CCCTCCGTTCCTATAAGACCTTTTAG 60.463 46.154 0.00 0.00 0.00 1.85
1559 1655 6.323225 CCTCCGTTCCTATAAGACCTTTTAGA 59.677 42.308 8.25 0.00 0.00 2.10
1560 1656 7.344095 TCCGTTCCTATAAGACCTTTTAGAG 57.656 40.000 8.25 1.47 0.00 2.43
1561 1657 7.121382 TCCGTTCCTATAAGACCTTTTAGAGA 58.879 38.462 8.25 3.21 0.00 3.10
1562 1658 7.783596 TCCGTTCCTATAAGACCTTTTAGAGAT 59.216 37.037 8.25 0.00 0.00 2.75
1563 1659 8.422566 CCGTTCCTATAAGACCTTTTAGAGATT 58.577 37.037 8.25 0.00 0.00 2.40
1564 1660 9.819267 CGTTCCTATAAGACCTTTTAGAGATTT 57.181 33.333 8.25 0.00 0.00 2.17
1586 1682 8.773404 ATTTTAATATGGACTACATACGGAGC 57.227 34.615 0.00 0.00 44.41 4.70
1587 1683 6.904463 TTAATATGGACTACATACGGAGCA 57.096 37.500 0.00 0.00 44.41 4.26
1588 1684 5.801531 AATATGGACTACATACGGAGCAA 57.198 39.130 0.00 0.00 44.41 3.91
1589 1685 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
1590 1686 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1591 1687 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1592 1688 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
1593 1689 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
1594 1690 6.046593 TGGACTACATACGGAGCAAAATAAG 58.953 40.000 0.00 0.00 0.00 1.73
1595 1691 6.047231 GGACTACATACGGAGCAAAATAAGT 58.953 40.000 0.00 0.00 0.00 2.24
1596 1692 6.018994 GGACTACATACGGAGCAAAATAAGTG 60.019 42.308 0.00 0.00 0.00 3.16
1597 1693 4.616181 ACATACGGAGCAAAATAAGTGC 57.384 40.909 0.00 0.00 42.55 4.40
1598 1694 3.063452 ACATACGGAGCAAAATAAGTGCG 59.937 43.478 0.00 0.00 46.86 5.34
1599 1695 1.519408 ACGGAGCAAAATAAGTGCGT 58.481 45.000 0.00 0.00 46.86 5.24
1600 1696 1.463444 ACGGAGCAAAATAAGTGCGTC 59.537 47.619 0.00 0.00 46.86 5.19
1601 1697 1.732259 CGGAGCAAAATAAGTGCGTCT 59.268 47.619 0.00 0.00 46.86 4.18
1602 1698 2.927477 CGGAGCAAAATAAGTGCGTCTA 59.073 45.455 0.00 0.00 46.86 2.59
1603 1699 3.555956 CGGAGCAAAATAAGTGCGTCTAT 59.444 43.478 0.00 0.00 46.86 1.98
1604 1700 4.743151 CGGAGCAAAATAAGTGCGTCTATA 59.257 41.667 0.00 0.00 46.86 1.31
1605 1701 5.405571 CGGAGCAAAATAAGTGCGTCTATAT 59.594 40.000 0.00 0.00 46.86 0.86
1606 1702 6.584942 CGGAGCAAAATAAGTGCGTCTATATA 59.415 38.462 0.00 0.00 46.86 0.86
1607 1703 7.410513 CGGAGCAAAATAAGTGCGTCTATATAC 60.411 40.741 0.00 0.00 46.86 1.47
1608 1704 7.384115 GGAGCAAAATAAGTGCGTCTATATACA 59.616 37.037 0.00 0.00 46.86 2.29
1609 1705 8.833231 AGCAAAATAAGTGCGTCTATATACAT 57.167 30.769 0.00 0.00 46.86 2.29
1610 1706 8.926710 AGCAAAATAAGTGCGTCTATATACATC 58.073 33.333 0.00 0.00 46.86 3.06
1611 1707 8.169268 GCAAAATAAGTGCGTCTATATACATCC 58.831 37.037 0.00 0.00 31.20 3.51
1612 1708 8.373256 CAAAATAAGTGCGTCTATATACATCCG 58.627 37.037 0.00 0.00 0.00 4.18
1613 1709 6.754702 ATAAGTGCGTCTATATACATCCGT 57.245 37.500 0.00 0.00 0.00 4.69
1614 1710 7.854557 ATAAGTGCGTCTATATACATCCGTA 57.145 36.000 0.00 0.00 0.00 4.02
1615 1711 6.754702 AAGTGCGTCTATATACATCCGTAT 57.245 37.500 0.00 0.00 41.34 3.06
1616 1712 6.120378 AGTGCGTCTATATACATCCGTATG 57.880 41.667 0.00 0.00 38.79 2.39
1631 1727 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
1632 1728 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
1633 1729 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
1634 1730 9.832445 ATCCGTATGTAGTTTGTATTGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
1635 1731 9.309516 TCCGTATGTAGTTTGTATTGAAATCTC 57.690 33.333 0.00 0.00 0.00 2.75
1636 1732 9.314321 CCGTATGTAGTTTGTATTGAAATCTCT 57.686 33.333 0.00 0.00 0.00 3.10
1644 1740 8.523658 AGTTTGTATTGAAATCTCTAAAAGGGC 58.476 33.333 0.00 0.00 0.00 5.19
1645 1741 8.523658 GTTTGTATTGAAATCTCTAAAAGGGCT 58.476 33.333 0.00 0.00 0.00 5.19
1646 1742 8.650143 TTGTATTGAAATCTCTAAAAGGGCTT 57.350 30.769 0.00 0.00 0.00 4.35
1647 1743 9.747898 TTGTATTGAAATCTCTAAAAGGGCTTA 57.252 29.630 0.00 0.00 0.00 3.09
1648 1744 9.920946 TGTATTGAAATCTCTAAAAGGGCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
1659 1755 8.897872 TCTAAAAGGGCTTATATTTAGGAACG 57.102 34.615 0.00 0.00 36.48 3.95
1660 1756 6.954487 AAAAGGGCTTATATTTAGGAACGG 57.046 37.500 0.00 0.00 0.00 4.44
1661 1757 5.899631 AAGGGCTTATATTTAGGAACGGA 57.100 39.130 0.00 0.00 0.00 4.69
1662 1758 5.485209 AGGGCTTATATTTAGGAACGGAG 57.515 43.478 0.00 0.00 0.00 4.63
1663 1759 4.286291 AGGGCTTATATTTAGGAACGGAGG 59.714 45.833 0.00 0.00 0.00 4.30
1664 1760 4.565028 GGGCTTATATTTAGGAACGGAGGG 60.565 50.000 0.00 0.00 0.00 4.30
1665 1761 4.041321 GGCTTATATTTAGGAACGGAGGGT 59.959 45.833 0.00 0.00 0.00 4.34
1666 1762 4.995487 GCTTATATTTAGGAACGGAGGGTG 59.005 45.833 0.00 0.00 0.00 4.61
1667 1763 5.454329 GCTTATATTTAGGAACGGAGGGTGT 60.454 44.000 0.00 0.00 0.00 4.16
1668 1764 6.239402 GCTTATATTTAGGAACGGAGGGTGTA 60.239 42.308 0.00 0.00 0.00 2.90
1703 1800 3.182887 TGCCCATAAAAGGTGGATTGT 57.817 42.857 0.00 0.00 39.12 2.71
1728 1827 4.380843 TGGCAGAGTTCCCTATTTTGAA 57.619 40.909 0.00 0.00 0.00 2.69
1766 1892 7.335422 CCTAATGGCTAATGTTATAAGCTCAGG 59.665 40.741 0.00 0.00 36.48 3.86
1767 1893 4.973168 TGGCTAATGTTATAAGCTCAGGG 58.027 43.478 0.00 0.00 36.48 4.45
1770 1896 6.183361 TGGCTAATGTTATAAGCTCAGGGAAT 60.183 38.462 0.00 0.00 36.48 3.01
1771 1897 6.717084 GGCTAATGTTATAAGCTCAGGGAATT 59.283 38.462 0.00 0.00 36.48 2.17
1772 1898 7.094592 GGCTAATGTTATAAGCTCAGGGAATTC 60.095 40.741 0.00 0.00 36.48 2.17
1793 1921 4.358851 TCTTTTGGTTGTGCTCAAATTCG 58.641 39.130 2.18 0.00 35.20 3.34
1802 1930 5.681337 TGTGCTCAAATTCGTAATGTTGA 57.319 34.783 0.00 0.00 0.00 3.18
1861 1996 4.160642 TCATCCTGTGCTTATGCTGATT 57.839 40.909 1.96 0.00 40.48 2.57
1915 2054 5.048434 GGTTCTCTTCTCTTGATGGGTTTTG 60.048 44.000 0.00 0.00 0.00 2.44
1934 2073 2.972625 TGCGTGATGAGGAGGTTTAAG 58.027 47.619 0.00 0.00 0.00 1.85
1938 2077 3.941483 CGTGATGAGGAGGTTTAAGCATT 59.059 43.478 0.00 0.00 0.00 3.56
1952 2092 6.458888 GGTTTAAGCATTTCTGATCAGCTACC 60.459 42.308 18.36 12.13 34.66 3.18
1953 2093 3.205784 AGCATTTCTGATCAGCTACCC 57.794 47.619 18.36 6.17 33.06 3.69
2018 2158 4.009675 GGAGCCATGACACAAATAAGACA 58.990 43.478 0.00 0.00 0.00 3.41
2074 2214 1.897802 GGGATCGTTCGGGGTATATGT 59.102 52.381 0.00 0.00 0.00 2.29
2145 2285 2.672996 CCTGGGTTGGACTTGGCG 60.673 66.667 0.00 0.00 0.00 5.69
2179 2319 2.702261 TGGTTTACAGGTAATCCGCAC 58.298 47.619 12.32 0.42 37.60 5.34
2182 2322 3.502979 GGTTTACAGGTAATCCGCACAAA 59.497 43.478 4.11 0.00 39.05 2.83
2183 2323 4.023021 GGTTTACAGGTAATCCGCACAAAA 60.023 41.667 4.11 0.00 39.05 2.44
2184 2324 5.336134 GGTTTACAGGTAATCCGCACAAAAT 60.336 40.000 4.11 0.00 39.05 1.82
2199 2339 5.120519 CGCACAAAATCATTAGCATTTGGTT 59.879 36.000 0.00 0.00 37.15 3.67
2213 2353 6.752168 AGCATTTGGTTATTCCATATTCTGC 58.248 36.000 0.00 0.00 46.60 4.26
2228 2368 7.719193 TCCATATTCTGCGAATCTTGGAATTTA 59.281 33.333 20.56 8.68 0.00 1.40
2233 2373 9.956720 ATTCTGCGAATCTTGGAATTTAAATAG 57.043 29.630 0.01 0.00 0.00 1.73
2236 2376 6.096141 TGCGAATCTTGGAATTTAAATAGCCA 59.904 34.615 15.19 15.19 0.00 4.75
2256 2396 6.435164 AGCCATAGTTATTTGGATTGTTCCT 58.565 36.000 0.00 0.00 43.07 3.36
2257 2397 6.322201 AGCCATAGTTATTTGGATTGTTCCTG 59.678 38.462 0.00 0.00 43.07 3.86
2258 2398 6.321181 GCCATAGTTATTTGGATTGTTCCTGA 59.679 38.462 0.00 0.00 43.07 3.86
2259 2399 7.147915 GCCATAGTTATTTGGATTGTTCCTGAA 60.148 37.037 0.00 0.00 43.07 3.02
2260 2400 8.748412 CCATAGTTATTTGGATTGTTCCTGAAA 58.252 33.333 0.00 0.00 43.07 2.69
2261 2401 9.793252 CATAGTTATTTGGATTGTTCCTGAAAG 57.207 33.333 0.00 0.00 43.07 2.62
2267 2407 7.841915 TTTGGATTGTTCCTGAAAGAAAAAC 57.158 32.000 0.00 0.00 43.07 2.43
2278 2418 6.983890 TCCTGAAAGAAAAACAGTTATTTGCC 59.016 34.615 0.00 0.00 34.07 4.52
2302 2442 8.720562 GCCTTTATTTGTTGCATCTGTAAATTT 58.279 29.630 0.00 0.00 0.00 1.82
2309 2449 8.830201 TTGTTGCATCTGTAAATTTTAGCAAT 57.170 26.923 12.86 0.00 41.90 3.56
2346 2486 2.763448 CCTCCAAGGAGTTCTCCACTAG 59.237 54.545 19.28 11.01 37.67 2.57
2350 2490 7.809906 CTCCAAGGAGTTCTCCACTAGGAGT 62.810 52.000 24.15 4.78 46.90 3.85
2365 2505 1.258445 GGAGTCGTCACCATGGGAGT 61.258 60.000 18.09 6.22 0.00 3.85
2378 2518 0.400213 TGGGAGTCACCGAATTGCTT 59.600 50.000 0.00 0.00 40.11 3.91
2388 2528 6.016276 AGTCACCGAATTGCTTAGTGAATTTT 60.016 34.615 0.00 0.00 39.04 1.82
2525 2668 4.494484 CTCTCACGGTGTTTGACATGATA 58.506 43.478 8.17 0.00 0.00 2.15
2568 2711 2.167075 GAGGGTCTTTGGGCAATTCATG 59.833 50.000 0.00 0.00 0.00 3.07
2586 2729 9.158233 CAATTCATGCTAAAATTCCTCAATTGT 57.842 29.630 5.13 0.00 32.18 2.71
2594 2737 7.327032 GCTAAAATTCCTCAATTGTGTTCTGTC 59.673 37.037 5.13 0.00 32.18 3.51
2599 2742 5.300752 TCCTCAATTGTGTTCTGTCTCTTC 58.699 41.667 5.13 0.00 0.00 2.87
2603 2746 7.255381 CCTCAATTGTGTTCTGTCTCTTCAAAT 60.255 37.037 5.13 0.00 0.00 2.32
2604 2747 7.999679 TCAATTGTGTTCTGTCTCTTCAAATT 58.000 30.769 5.13 0.00 0.00 1.82
2614 2757 7.040494 TCTGTCTCTTCAAATTATCTGCTGAG 58.960 38.462 0.00 0.00 0.00 3.35
2649 2792 5.065914 CCATTAGTGACATTGGGGTATCAG 58.934 45.833 0.00 0.00 0.00 2.90
2661 2804 5.290493 TGGGGTATCAGTTATGCAAGTAG 57.710 43.478 0.00 0.00 0.00 2.57
2687 2830 3.498334 CCCTACTTCTATCCGTAAGCCT 58.502 50.000 0.00 0.00 0.00 4.58
2717 2860 1.478510 CCTCACACGTCTAGATTGGCT 59.521 52.381 0.00 0.00 0.00 4.75
2741 2884 8.648097 GCTATATGTGTTAATTGTATCAGACGG 58.352 37.037 0.00 0.00 0.00 4.79
2743 2886 4.509616 TGTGTTAATTGTATCAGACGGGG 58.490 43.478 0.00 0.00 0.00 5.73
2745 2888 4.569564 GTGTTAATTGTATCAGACGGGGTC 59.430 45.833 0.00 0.00 0.00 4.46
2746 2889 4.468510 TGTTAATTGTATCAGACGGGGTCT 59.531 41.667 0.00 0.00 44.44 3.85
2747 2890 5.046159 TGTTAATTGTATCAGACGGGGTCTT 60.046 40.000 0.00 0.00 41.37 3.01
2748 2891 6.154877 TGTTAATTGTATCAGACGGGGTCTTA 59.845 38.462 0.00 0.00 41.37 2.10
2749 2892 5.687166 AATTGTATCAGACGGGGTCTTAA 57.313 39.130 0.00 0.00 41.37 1.85
2753 2901 2.467566 TCAGACGGGGTCTTAAAAGC 57.532 50.000 0.00 0.00 41.37 3.51
2818 2966 8.847196 CATACATGTCCTCATCTTGATCAAATT 58.153 33.333 9.88 0.00 31.15 1.82
2852 3003 5.643379 TTCTTCAGAAATGGTGGTTATGC 57.357 39.130 0.00 0.00 0.00 3.14
3010 3164 4.337060 CGACACTCCGACGTGCCA 62.337 66.667 0.00 0.00 38.45 4.92
3048 3202 0.753262 GTGCTGGGATCGTGGTCTAT 59.247 55.000 0.00 0.00 0.00 1.98
3057 3211 1.079197 CGTGGTCTATGTGCTGGCA 60.079 57.895 0.00 0.00 0.00 4.92
3108 3262 1.063183 AGCTCACTTTCCTTCAGGCT 58.937 50.000 0.00 0.00 34.44 4.58
3111 3265 0.767375 TCACTTTCCTTCAGGCTGCT 59.233 50.000 10.34 0.00 34.44 4.24
3120 3274 3.324930 CAGGCTGCTGGTCTGGGA 61.325 66.667 0.00 0.00 43.40 4.37
3185 3339 1.553248 TGTCTTACTACTGGGCGCATT 59.447 47.619 10.83 0.33 0.00 3.56
3259 3413 0.251354 ATCAGTGCGCAAGTCCTGAT 59.749 50.000 26.67 26.67 45.30 2.90
3266 3420 1.649664 CGCAAGTCCTGATTCCTGAG 58.350 55.000 0.00 0.00 0.00 3.35
3390 3545 8.500773 CAGAATTGCAGAATGTAAAATTTTGCT 58.499 29.630 18.09 1.00 45.69 3.91
3573 3729 5.939296 CCTTTTGCCCAATCAAACAATGTAT 59.061 36.000 0.00 0.00 35.86 2.29
3704 3860 7.814107 GTCTGCTCAATTTTGTTCCATCATTTA 59.186 33.333 0.00 0.00 0.00 1.40
3705 3861 7.814107 TCTGCTCAATTTTGTTCCATCATTTAC 59.186 33.333 0.00 0.00 0.00 2.01
3707 3863 7.599621 TGCTCAATTTTGTTCCATCATTTACAG 59.400 33.333 0.00 0.00 0.00 2.74
3709 3865 6.873076 TCAATTTTGTTCCATCATTTACAGGC 59.127 34.615 0.00 0.00 0.00 4.85
3711 3867 7.716799 ATTTTGTTCCATCATTTACAGGCTA 57.283 32.000 0.00 0.00 0.00 3.93
3727 3894 6.819397 ACAGGCTAAATAACTTTTCCACTC 57.181 37.500 0.00 0.00 0.00 3.51
3793 3960 5.354234 ACCGAATGTAATTTTGCTGTCTAGG 59.646 40.000 0.00 0.00 36.07 3.02
3798 3965 6.715344 TGTAATTTTGCTGTCTAGGTTACG 57.285 37.500 0.00 0.00 0.00 3.18
3886 4059 2.859165 TTGATGACCAACAGGGACTC 57.141 50.000 0.00 0.00 41.15 3.36
3965 4362 4.395542 GCTCTCTGAGAAATGACTGCAAAT 59.604 41.667 8.95 0.00 0.00 2.32
4001 4398 1.754226 TGAACTGAACCTTTTGCCCAC 59.246 47.619 0.00 0.00 0.00 4.61
4025 4442 1.247567 ACAATGTACAGCCAGGCAAC 58.752 50.000 15.80 9.42 0.00 4.17
4063 4486 0.599558 TGCTGAGCACAAAATCTGGC 59.400 50.000 1.40 0.00 31.71 4.85
4072 4495 4.119862 GCACAAAATCTGGCGATCTACTA 58.880 43.478 0.00 0.00 0.00 1.82
4073 4496 4.025647 GCACAAAATCTGGCGATCTACTAC 60.026 45.833 0.00 0.00 0.00 2.73
4074 4497 5.352284 CACAAAATCTGGCGATCTACTACT 58.648 41.667 0.00 0.00 0.00 2.57
4075 4498 5.233050 CACAAAATCTGGCGATCTACTACTG 59.767 44.000 0.00 0.00 0.00 2.74
4076 4499 4.592485 AAATCTGGCGATCTACTACTGG 57.408 45.455 0.00 0.00 0.00 4.00
4077 4500 2.730934 TCTGGCGATCTACTACTGGT 57.269 50.000 0.00 0.00 0.00 4.00
4078 4501 2.298610 TCTGGCGATCTACTACTGGTG 58.701 52.381 0.00 0.00 0.00 4.17
4079 4502 1.338337 CTGGCGATCTACTACTGGTGG 59.662 57.143 0.00 0.00 0.00 4.61
4080 4503 0.674534 GGCGATCTACTACTGGTGGG 59.325 60.000 0.00 0.00 0.00 4.61
4081 4504 1.400737 GCGATCTACTACTGGTGGGT 58.599 55.000 0.00 0.00 0.00 4.51
4082 4505 1.067212 GCGATCTACTACTGGTGGGTG 59.933 57.143 0.00 0.00 0.00 4.61
4083 4506 2.376109 CGATCTACTACTGGTGGGTGT 58.624 52.381 0.00 0.00 0.00 4.16
4084 4507 2.358267 CGATCTACTACTGGTGGGTGTC 59.642 54.545 0.00 0.00 0.00 3.67
4085 4508 2.226962 TCTACTACTGGTGGGTGTCC 57.773 55.000 0.00 0.00 0.00 4.02
4086 4509 1.192428 CTACTACTGGTGGGTGTCCC 58.808 60.000 0.00 0.00 45.71 4.46
4087 4510 0.788383 TACTACTGGTGGGTGTCCCT 59.212 55.000 6.38 0.00 45.70 4.20
4088 4511 0.836400 ACTACTGGTGGGTGTCCCTG 60.836 60.000 6.38 0.00 45.70 4.45
4089 4512 2.185310 CTACTGGTGGGTGTCCCTGC 62.185 65.000 6.38 0.00 45.70 4.85
4110 4533 0.324645 GGACCATCTTGGCCATTGGT 60.325 55.000 26.92 26.92 42.67 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 2.869192 GTGGATTTCTCCGCTCAAGATC 59.131 50.000 0.00 0.00 46.68 2.75
439 440 1.542030 CACGGCTCTCTACTTCACACT 59.458 52.381 0.00 0.00 0.00 3.55
644 646 2.675423 TCGCCGTCCAGTAGCTGT 60.675 61.111 0.00 0.00 0.00 4.40
740 742 5.248020 ACTGATGTTCTCTTGGATCAGAAGT 59.752 40.000 13.39 0.09 42.99 3.01
769 771 7.255001 CGTAAAGAACTTTCTGTTAATGTGGGT 60.255 37.037 2.99 0.00 39.30 4.51
771 773 7.636326 ACGTAAAGAACTTTCTGTTAATGTGG 58.364 34.615 2.99 0.00 39.30 4.17
800 802 9.567848 CAGTTAACTCTGTTAATGTGTGTTTTT 57.432 29.630 4.77 0.00 0.00 1.94
801 803 8.188139 CCAGTTAACTCTGTTAATGTGTGTTTT 58.812 33.333 4.77 0.00 34.02 2.43
902 917 1.376466 GCTGAGGAAGAGGGCACAA 59.624 57.895 0.00 0.00 0.00 3.33
939 954 5.163561 CCTTTGTAAAGTCAAACTCCTTGCA 60.164 40.000 3.90 0.00 34.30 4.08
966 989 4.094476 ACGGAGAGGAATCCAAGTCTTAA 58.906 43.478 0.61 0.00 39.53 1.85
967 990 3.700038 GACGGAGAGGAATCCAAGTCTTA 59.300 47.826 0.61 0.00 39.53 2.10
968 991 2.498078 GACGGAGAGGAATCCAAGTCTT 59.502 50.000 0.61 0.00 39.53 3.01
975 998 2.128507 AGGCGACGGAGAGGAATCC 61.129 63.158 0.00 0.00 35.88 3.01
1181 1221 1.912731 TCTCCCCGGAATGAAATGTCA 59.087 47.619 0.73 0.00 38.41 3.58
1183 1223 2.936202 CATCTCCCCGGAATGAAATGT 58.064 47.619 0.73 0.00 0.00 2.71
1199 1239 3.411517 CCAAGGACCGGGGCATCT 61.412 66.667 6.32 0.00 0.00 2.90
1200 1240 1.917336 TAACCAAGGACCGGGGCATC 61.917 60.000 6.32 0.00 0.00 3.91
1201 1241 1.921869 CTAACCAAGGACCGGGGCAT 61.922 60.000 6.32 0.00 0.00 4.40
1202 1242 2.529643 TAACCAAGGACCGGGGCA 60.530 61.111 6.32 0.00 0.00 5.36
1203 1243 2.271173 CTAACCAAGGACCGGGGC 59.729 66.667 6.32 0.00 0.00 5.80
1240 1280 0.392998 AGGCGACGGCATGAATTTCT 60.393 50.000 24.23 0.00 42.47 2.52
1253 1293 0.451783 CCATTAACCAAGCAGGCGAC 59.548 55.000 0.00 0.00 43.14 5.19
1304 1361 1.207593 CTTGCGACCAAAAGCGGAG 59.792 57.895 0.00 0.00 35.87 4.63
1305 1362 1.227704 TCTTGCGACCAAAAGCGGA 60.228 52.632 0.00 0.00 35.87 5.54
1306 1363 1.082104 GTCTTGCGACCAAAAGCGG 60.082 57.895 0.00 0.00 33.98 5.52
1307 1364 0.384725 CAGTCTTGCGACCAAAAGCG 60.385 55.000 0.00 0.00 41.16 4.68
1328 1385 0.038159 ACGAGAACAGCTAGCACACC 60.038 55.000 18.83 3.27 0.00 4.16
1429 1525 4.519906 TCTTCCAAGAAAAACCTGGAGT 57.480 40.909 0.00 0.00 30.73 3.85
1464 1560 9.717942 TTACATGGGATTAAACTTCAAAAATGG 57.282 29.630 0.00 0.00 0.00 3.16
1482 1578 5.890985 TGTTCCAGGATTACATTTACATGGG 59.109 40.000 0.00 0.00 35.36 4.00
1485 1581 7.669722 ACTTGTGTTCCAGGATTACATTTACAT 59.330 33.333 7.03 0.00 0.00 2.29
1503 1599 7.929941 GTACTAGGTAGGTAGTACTTGTGTT 57.070 40.000 0.00 0.00 46.50 3.32
1512 1608 4.910913 GGGAGTAGGTACTAGGTAGGTAGT 59.089 50.000 0.00 0.00 44.14 2.73
1513 1609 5.161886 AGGGAGTAGGTACTAGGTAGGTAG 58.838 50.000 0.00 0.00 44.14 3.18
1514 1610 5.158889 GAGGGAGTAGGTACTAGGTAGGTA 58.841 50.000 0.00 0.00 44.14 3.08
1515 1611 3.980022 GAGGGAGTAGGTACTAGGTAGGT 59.020 52.174 0.00 0.00 44.14 3.08
1516 1612 3.330405 GGAGGGAGTAGGTACTAGGTAGG 59.670 56.522 0.00 0.00 44.14 3.18
1517 1613 3.007831 CGGAGGGAGTAGGTACTAGGTAG 59.992 56.522 0.00 0.00 44.14 3.18
1518 1614 2.975489 CGGAGGGAGTAGGTACTAGGTA 59.025 54.545 0.00 0.00 44.14 3.08
1519 1615 1.773653 CGGAGGGAGTAGGTACTAGGT 59.226 57.143 0.00 0.00 44.14 3.08
1520 1616 1.773653 ACGGAGGGAGTAGGTACTAGG 59.226 57.143 0.00 0.00 44.14 3.02
1521 1617 3.475575 GAACGGAGGGAGTAGGTACTAG 58.524 54.545 0.00 0.00 44.14 2.57
1522 1618 2.173569 GGAACGGAGGGAGTAGGTACTA 59.826 54.545 0.00 0.00 41.75 1.82
1523 1619 1.064091 GGAACGGAGGGAGTAGGTACT 60.064 57.143 0.00 0.00 46.37 2.73
1524 1620 1.064091 AGGAACGGAGGGAGTAGGTAC 60.064 57.143 0.00 0.00 0.00 3.34
1525 1621 1.302907 AGGAACGGAGGGAGTAGGTA 58.697 55.000 0.00 0.00 0.00 3.08
1526 1622 1.302907 TAGGAACGGAGGGAGTAGGT 58.697 55.000 0.00 0.00 0.00 3.08
1527 1623 2.679429 ATAGGAACGGAGGGAGTAGG 57.321 55.000 0.00 0.00 0.00 3.18
1528 1624 4.761227 GTCTTATAGGAACGGAGGGAGTAG 59.239 50.000 0.00 0.00 0.00 2.57
1529 1625 4.446889 GGTCTTATAGGAACGGAGGGAGTA 60.447 50.000 0.00 0.00 0.00 2.59
1530 1626 3.564264 GTCTTATAGGAACGGAGGGAGT 58.436 50.000 0.00 0.00 0.00 3.85
1531 1627 2.892215 GGTCTTATAGGAACGGAGGGAG 59.108 54.545 0.00 0.00 0.00 4.30
1532 1628 2.517127 AGGTCTTATAGGAACGGAGGGA 59.483 50.000 0.00 0.00 0.00 4.20
1533 1629 2.960163 AGGTCTTATAGGAACGGAGGG 58.040 52.381 0.00 0.00 0.00 4.30
1534 1630 5.354842 AAAAGGTCTTATAGGAACGGAGG 57.645 43.478 0.00 0.00 0.00 4.30
1535 1631 7.284944 TCTCTAAAAGGTCTTATAGGAACGGAG 59.715 40.741 0.00 0.47 0.00 4.63
1536 1632 7.121382 TCTCTAAAAGGTCTTATAGGAACGGA 58.879 38.462 0.00 0.00 0.00 4.69
1537 1633 7.344095 TCTCTAAAAGGTCTTATAGGAACGG 57.656 40.000 0.00 0.00 0.00 4.44
1538 1634 9.819267 AAATCTCTAAAAGGTCTTATAGGAACG 57.181 33.333 0.00 0.00 0.00 3.95
1560 1656 8.870879 GCTCCGTATGTAGTCCATATTAAAATC 58.129 37.037 0.00 0.00 38.29 2.17
1561 1657 8.372459 TGCTCCGTATGTAGTCCATATTAAAAT 58.628 33.333 0.00 0.00 38.29 1.82
1562 1658 7.728148 TGCTCCGTATGTAGTCCATATTAAAA 58.272 34.615 0.00 0.00 38.29 1.52
1563 1659 7.292713 TGCTCCGTATGTAGTCCATATTAAA 57.707 36.000 0.00 0.00 38.29 1.52
1564 1660 6.904463 TGCTCCGTATGTAGTCCATATTAA 57.096 37.500 0.00 0.00 38.29 1.40
1565 1661 6.904463 TTGCTCCGTATGTAGTCCATATTA 57.096 37.500 0.00 0.00 38.29 0.98
1566 1662 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
1567 1663 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
1568 1664 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
1569 1665 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1570 1666 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1571 1667 6.018994 CACTTATTTTGCTCCGTATGTAGTCC 60.019 42.308 0.00 0.00 0.00 3.85
1572 1668 6.509677 GCACTTATTTTGCTCCGTATGTAGTC 60.510 42.308 0.00 0.00 37.00 2.59
1573 1669 5.293569 GCACTTATTTTGCTCCGTATGTAGT 59.706 40.000 0.00 0.00 37.00 2.73
1574 1670 5.556382 CGCACTTATTTTGCTCCGTATGTAG 60.556 44.000 0.00 0.00 37.87 2.74
1575 1671 4.269123 CGCACTTATTTTGCTCCGTATGTA 59.731 41.667 0.00 0.00 37.87 2.29
1576 1672 3.063452 CGCACTTATTTTGCTCCGTATGT 59.937 43.478 0.00 0.00 37.87 2.29
1577 1673 3.063452 ACGCACTTATTTTGCTCCGTATG 59.937 43.478 0.00 0.00 37.87 2.39
1578 1674 3.267483 ACGCACTTATTTTGCTCCGTAT 58.733 40.909 0.00 0.00 37.87 3.06
1579 1675 2.669434 GACGCACTTATTTTGCTCCGTA 59.331 45.455 0.00 0.00 37.87 4.02
1580 1676 1.463444 GACGCACTTATTTTGCTCCGT 59.537 47.619 0.00 0.00 37.87 4.69
1581 1677 1.732259 AGACGCACTTATTTTGCTCCG 59.268 47.619 0.00 0.00 37.87 4.63
1582 1678 6.787085 ATATAGACGCACTTATTTTGCTCC 57.213 37.500 0.00 0.00 37.87 4.70
1583 1679 8.294341 TGTATATAGACGCACTTATTTTGCTC 57.706 34.615 0.00 0.00 37.87 4.26
1584 1680 8.833231 ATGTATATAGACGCACTTATTTTGCT 57.167 30.769 0.00 0.00 37.87 3.91
1585 1681 8.169268 GGATGTATATAGACGCACTTATTTTGC 58.831 37.037 0.00 0.00 36.57 3.68
1586 1682 8.373256 CGGATGTATATAGACGCACTTATTTTG 58.627 37.037 0.00 0.00 0.00 2.44
1587 1683 8.086522 ACGGATGTATATAGACGCACTTATTTT 58.913 33.333 0.00 0.00 0.00 1.82
1588 1684 7.600065 ACGGATGTATATAGACGCACTTATTT 58.400 34.615 0.00 0.00 0.00 1.40
1589 1685 7.154435 ACGGATGTATATAGACGCACTTATT 57.846 36.000 0.00 0.00 0.00 1.40
1590 1686 6.754702 ACGGATGTATATAGACGCACTTAT 57.245 37.500 0.00 0.00 0.00 1.73
1591 1687 7.335171 ACATACGGATGTATATAGACGCACTTA 59.665 37.037 12.79 0.00 44.77 2.24
1592 1688 6.150641 ACATACGGATGTATATAGACGCACTT 59.849 38.462 12.79 0.00 44.77 3.16
1593 1689 5.646793 ACATACGGATGTATATAGACGCACT 59.353 40.000 12.79 0.00 44.77 4.40
1594 1690 5.877031 ACATACGGATGTATATAGACGCAC 58.123 41.667 12.79 0.00 44.77 5.34
1595 1691 6.820152 ACTACATACGGATGTATATAGACGCA 59.180 38.462 20.64 0.00 45.42 5.24
1596 1692 7.244166 ACTACATACGGATGTATATAGACGC 57.756 40.000 20.64 0.00 45.42 5.19
1597 1693 9.486857 CAAACTACATACGGATGTATATAGACG 57.513 37.037 20.64 9.79 45.42 4.18
1605 1701 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
1607 1703 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
1608 1704 9.832445 AGATTTCAATACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
1609 1705 9.309516 GAGATTTCAATACAAACTACATACGGA 57.690 33.333 0.00 0.00 0.00 4.69
1610 1706 9.314321 AGAGATTTCAATACAAACTACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
1618 1714 8.523658 GCCCTTTTAGAGATTTCAATACAAACT 58.476 33.333 0.00 0.00 0.00 2.66
1619 1715 8.523658 AGCCCTTTTAGAGATTTCAATACAAAC 58.476 33.333 0.00 0.00 0.00 2.93
1620 1716 8.650143 AGCCCTTTTAGAGATTTCAATACAAA 57.350 30.769 0.00 0.00 0.00 2.83
1621 1717 8.650143 AAGCCCTTTTAGAGATTTCAATACAA 57.350 30.769 0.00 0.00 0.00 2.41
1622 1718 9.920946 ATAAGCCCTTTTAGAGATTTCAATACA 57.079 29.630 0.00 0.00 0.00 2.29
1633 1729 8.989980 CGTTCCTAAATATAAGCCCTTTTAGAG 58.010 37.037 0.00 0.00 34.90 2.43
1634 1730 7.935210 CCGTTCCTAAATATAAGCCCTTTTAGA 59.065 37.037 0.00 0.00 34.90 2.10
1635 1731 7.935210 TCCGTTCCTAAATATAAGCCCTTTTAG 59.065 37.037 0.00 0.00 33.47 1.85
1636 1732 7.804147 TCCGTTCCTAAATATAAGCCCTTTTA 58.196 34.615 0.00 0.00 0.00 1.52
1637 1733 6.665695 TCCGTTCCTAAATATAAGCCCTTTT 58.334 36.000 0.00 0.00 0.00 2.27
1638 1734 6.256643 TCCGTTCCTAAATATAAGCCCTTT 57.743 37.500 0.00 0.00 0.00 3.11
1639 1735 5.221864 CCTCCGTTCCTAAATATAAGCCCTT 60.222 44.000 0.00 0.00 0.00 3.95
1640 1736 4.286291 CCTCCGTTCCTAAATATAAGCCCT 59.714 45.833 0.00 0.00 0.00 5.19
1641 1737 4.565028 CCCTCCGTTCCTAAATATAAGCCC 60.565 50.000 0.00 0.00 0.00 5.19
1642 1738 4.041321 ACCCTCCGTTCCTAAATATAAGCC 59.959 45.833 0.00 0.00 0.00 4.35
1643 1739 4.995487 CACCCTCCGTTCCTAAATATAAGC 59.005 45.833 0.00 0.00 0.00 3.09
1644 1740 6.170846 ACACCCTCCGTTCCTAAATATAAG 57.829 41.667 0.00 0.00 0.00 1.73
1645 1741 6.610830 TGTACACCCTCCGTTCCTAAATATAA 59.389 38.462 0.00 0.00 0.00 0.98
1646 1742 6.135454 TGTACACCCTCCGTTCCTAAATATA 58.865 40.000 0.00 0.00 0.00 0.86
1647 1743 4.964262 TGTACACCCTCCGTTCCTAAATAT 59.036 41.667 0.00 0.00 0.00 1.28
1648 1744 4.352009 TGTACACCCTCCGTTCCTAAATA 58.648 43.478 0.00 0.00 0.00 1.40
1649 1745 3.175594 TGTACACCCTCCGTTCCTAAAT 58.824 45.455 0.00 0.00 0.00 1.40
1650 1746 2.607499 TGTACACCCTCCGTTCCTAAA 58.393 47.619 0.00 0.00 0.00 1.85
1651 1747 2.307496 TGTACACCCTCCGTTCCTAA 57.693 50.000 0.00 0.00 0.00 2.69
1652 1748 2.537633 ATGTACACCCTCCGTTCCTA 57.462 50.000 0.00 0.00 0.00 2.94
1653 1749 1.553704 GAATGTACACCCTCCGTTCCT 59.446 52.381 0.00 0.00 0.00 3.36
1654 1750 1.553704 AGAATGTACACCCTCCGTTCC 59.446 52.381 0.00 0.00 0.00 3.62
1655 1751 4.430908 CTTAGAATGTACACCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
1656 1752 3.197116 CCTTAGAATGTACACCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
1657 1753 2.764572 CCTTAGAATGTACACCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
1658 1754 2.102588 CCCTTAGAATGTACACCCTCCG 59.897 54.545 0.00 0.00 0.00 4.63
1659 1755 2.158798 GCCCTTAGAATGTACACCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
1660 1756 2.772515 AGCCCTTAGAATGTACACCCTC 59.227 50.000 0.00 0.00 0.00 4.30
1661 1757 2.846950 AGCCCTTAGAATGTACACCCT 58.153 47.619 0.00 0.42 0.00 4.34
1662 1758 4.642429 CATAGCCCTTAGAATGTACACCC 58.358 47.826 0.00 0.00 0.00 4.61
1663 1759 4.065789 GCATAGCCCTTAGAATGTACACC 58.934 47.826 0.00 0.00 0.00 4.16
1664 1760 4.065789 GGCATAGCCCTTAGAATGTACAC 58.934 47.826 0.00 0.00 44.06 2.90
1665 1761 4.351874 GGCATAGCCCTTAGAATGTACA 57.648 45.455 0.00 0.00 44.06 2.90
1703 1800 4.591321 AAATAGGGAACTCTGCCAATCA 57.409 40.909 0.00 0.00 43.67 2.57
1728 1827 7.839200 ACATTAGCCATTAGGAATTGGTTTAGT 59.161 33.333 0.00 0.00 36.89 2.24
1730 1829 8.602472 AACATTAGCCATTAGGAATTGGTTTA 57.398 30.769 0.00 0.00 36.89 2.01
1766 1892 4.320608 TGAGCACAACCAAAAGAATTCC 57.679 40.909 0.65 0.00 0.00 3.01
1767 1893 6.849588 ATTTGAGCACAACCAAAAGAATTC 57.150 33.333 0.00 0.00 36.10 2.17
1770 1896 4.803088 CGAATTTGAGCACAACCAAAAGAA 59.197 37.500 0.00 0.00 36.10 2.52
1771 1897 4.142271 ACGAATTTGAGCACAACCAAAAGA 60.142 37.500 0.00 0.00 36.10 2.52
1772 1898 4.111916 ACGAATTTGAGCACAACCAAAAG 58.888 39.130 0.00 0.00 36.10 2.27
1817 1945 6.483307 TGAACCTGCATAGCTTATGACATTAC 59.517 38.462 0.00 0.00 38.45 1.89
1849 1984 5.700722 TGATGAATCCAATCAGCATAAGC 57.299 39.130 0.00 0.00 40.52 3.09
1861 1996 5.157395 TCACTCCCTATGATGATGAATCCA 58.843 41.667 0.00 0.00 34.00 3.41
1915 2054 1.666189 GCTTAAACCTCCTCATCACGC 59.334 52.381 0.00 0.00 0.00 5.34
1934 2073 1.869767 CGGGTAGCTGATCAGAAATGC 59.130 52.381 27.04 11.37 0.00 3.56
1938 2077 3.014304 ACTACGGGTAGCTGATCAGAA 57.986 47.619 27.04 10.46 36.66 3.02
1952 2092 1.234821 TGGCTGCAGAAAAACTACGG 58.765 50.000 20.43 0.00 0.00 4.02
1953 2093 4.678509 TTATGGCTGCAGAAAAACTACG 57.321 40.909 20.43 0.00 0.00 3.51
2018 2158 3.379372 CGGCATGAAGAATCAAATGGACT 59.621 43.478 0.00 0.00 39.49 3.85
2074 2214 4.998671 TCATTGTGAAACTTGAAGGCAA 57.001 36.364 0.00 0.00 38.04 4.52
2145 2285 7.996385 ACCTGTAAACCATACAAAATGATAGC 58.004 34.615 0.00 0.00 0.00 2.97
2179 2319 9.381033 TGGAATAACCAAATGCTAATGATTTTG 57.619 29.630 0.00 0.00 46.75 2.44
2199 2339 6.768483 TCCAAGATTCGCAGAATATGGAATA 58.232 36.000 21.83 10.42 45.90 1.75
2213 2353 9.831737 CTATGGCTATTTAAATTCCAAGATTCG 57.168 33.333 19.38 3.44 0.00 3.34
2256 2396 8.785329 AAAGGCAAATAACTGTTTTTCTTTCA 57.215 26.923 0.00 0.00 0.00 2.69
2267 2407 7.418840 TGCAACAAATAAAGGCAAATAACTG 57.581 32.000 0.00 0.00 0.00 3.16
2302 2442 8.801882 AGGCACTAAAATTACTGTATTGCTAA 57.198 30.769 0.00 0.00 36.02 3.09
2306 2446 7.624360 TGGAGGCACTAAAATTACTGTATTG 57.376 36.000 0.00 0.00 41.55 1.90
2309 2449 6.013206 TCCTTGGAGGCACTAAAATTACTGTA 60.013 38.462 0.00 0.00 41.55 2.74
2316 2456 4.043435 AGAACTCCTTGGAGGCACTAAAAT 59.957 41.667 19.51 0.00 41.55 1.82
2318 2458 2.979678 AGAACTCCTTGGAGGCACTAAA 59.020 45.455 19.51 0.00 41.55 1.85
2346 2486 1.258445 ACTCCCATGGTGACGACTCC 61.258 60.000 11.73 0.00 0.00 3.85
2350 2490 1.541310 GGTGACTCCCATGGTGACGA 61.541 60.000 11.73 0.00 0.00 4.20
2353 2493 0.834261 TTCGGTGACTCCCATGGTGA 60.834 55.000 11.73 6.87 0.00 4.02
2365 2505 5.957842 AAATTCACTAAGCAATTCGGTGA 57.042 34.783 0.00 0.00 35.51 4.02
2388 2528 8.629158 AGCACAACATAACAGATTTCAAAGTTA 58.371 29.630 0.00 0.00 0.00 2.24
2404 2545 4.100035 CCTCTACAGATGGAGCACAACATA 59.900 45.833 0.00 0.00 32.15 2.29
2408 2549 1.833630 CCCTCTACAGATGGAGCACAA 59.166 52.381 0.00 0.00 32.15 3.33
2468 2611 5.358160 GTGCTTATTGCTTTGGTTATCTCCT 59.642 40.000 0.00 0.00 43.37 3.69
2470 2613 6.442513 AGTGCTTATTGCTTTGGTTATCTC 57.557 37.500 0.00 0.00 43.37 2.75
2471 2614 7.338710 TCTAGTGCTTATTGCTTTGGTTATCT 58.661 34.615 0.00 0.00 43.37 1.98
2500 2643 1.134521 TGTCAAACACCGTGAGAGCTT 60.135 47.619 5.28 0.00 0.00 3.74
2568 2711 7.147976 ACAGAACACAATTGAGGAATTTTAGC 58.852 34.615 13.59 0.00 28.65 3.09
2577 2720 5.059161 TGAAGAGACAGAACACAATTGAGG 58.941 41.667 13.59 6.39 0.00 3.86
2582 2725 9.512588 AGATAATTTGAAGAGACAGAACACAAT 57.487 29.630 0.00 0.00 0.00 2.71
2583 2726 8.777413 CAGATAATTTGAAGAGACAGAACACAA 58.223 33.333 0.00 0.00 0.00 3.33
2586 2729 7.118825 CAGCAGATAATTTGAAGAGACAGAACA 59.881 37.037 0.00 0.00 0.00 3.18
2594 2737 6.822676 ACCTTCTCAGCAGATAATTTGAAGAG 59.177 38.462 0.00 0.00 33.62 2.85
2599 2742 8.348507 GGATTAACCTTCTCAGCAGATAATTTG 58.651 37.037 0.00 0.00 35.41 2.32
2603 2746 5.163195 GGGGATTAACCTTCTCAGCAGATAA 60.163 44.000 0.00 0.00 38.98 1.75
2604 2747 4.348168 GGGGATTAACCTTCTCAGCAGATA 59.652 45.833 0.00 0.00 38.98 1.98
2614 2757 5.751586 TGTCACTAATGGGGATTAACCTTC 58.248 41.667 0.00 0.00 38.98 3.46
2661 2804 5.464030 TTACGGATAGAAGTAGGGCAATC 57.536 43.478 0.00 0.00 0.00 2.67
2666 2809 3.256136 CAGGCTTACGGATAGAAGTAGGG 59.744 52.174 0.00 0.00 0.00 3.53
2674 2817 3.068307 ACACTTAGCAGGCTTACGGATAG 59.932 47.826 0.00 0.00 0.00 2.08
2717 2860 8.092068 CCCCGTCTGATACAATTAACACATATA 58.908 37.037 0.00 0.00 0.00 0.86
2733 2876 2.572104 AGCTTTTAAGACCCCGTCTGAT 59.428 45.455 0.00 0.00 42.59 2.90
2741 2884 6.038050 CAGAATGATCTCAGCTTTTAAGACCC 59.962 42.308 0.00 0.00 39.69 4.46
2743 2886 7.840342 TCAGAATGATCTCAGCTTTTAAGAC 57.160 36.000 0.00 0.00 42.56 3.01
2789 2937 8.021898 TGATCAAGATGAGGACATGTATGTTA 57.978 34.615 0.00 0.00 41.95 2.41
2798 2946 6.247676 TGGAAATTTGATCAAGATGAGGACA 58.752 36.000 8.41 0.00 0.00 4.02
2818 2966 6.434028 CCATTTCTGAAGAATAACCACTGGAA 59.566 38.462 0.71 0.00 33.54 3.53
2892 3043 7.920682 AGGTAATACACAAACAAAAGCTGAAAG 59.079 33.333 0.00 0.00 0.00 2.62
2903 3054 8.749026 TTAAGGTTTCAGGTAATACACAAACA 57.251 30.769 10.93 0.00 0.00 2.83
3024 3178 2.126071 ACGATCCCAGCACGAACG 60.126 61.111 0.00 0.00 0.00 3.95
3037 3191 0.179073 GCCAGCACATAGACCACGAT 60.179 55.000 0.00 0.00 0.00 3.73
3108 3262 2.879756 GCTGTATTTTCCCAGACCAGCA 60.880 50.000 0.00 0.00 42.46 4.41
3111 3265 2.354704 CGAGCTGTATTTTCCCAGACCA 60.355 50.000 0.00 0.00 0.00 4.02
3185 3339 2.403259 CAGTGACATACAGCACGACAA 58.597 47.619 0.00 0.00 39.88 3.18
3266 3420 2.100991 CAAAATCGAGCAGCCGGC 59.899 61.111 21.89 21.89 45.30 6.13
3340 3495 5.613358 ATCGGAACTAGTTTGCAGAAAAG 57.387 39.130 10.02 0.00 0.00 2.27
3390 3545 8.974060 AAGAAAATCTACTGGTAAACAAGACA 57.026 30.769 0.00 0.00 0.00 3.41
3490 3645 7.330900 ACAGATAGCATCAAAGAAGGATTTG 57.669 36.000 0.00 0.00 40.75 2.32
3573 3729 5.357032 GCTGTAAATTAGCTGAGCCCTTTTA 59.643 40.000 0.00 0.00 38.14 1.52
3704 3860 5.710567 GGAGTGGAAAAGTTATTTAGCCTGT 59.289 40.000 0.00 0.00 0.00 4.00
3705 3861 5.946377 AGGAGTGGAAAAGTTATTTAGCCTG 59.054 40.000 0.00 0.00 0.00 4.85
3707 3863 6.835819 AAGGAGTGGAAAAGTTATTTAGCC 57.164 37.500 0.00 0.00 0.00 3.93
3709 3865 8.141268 TGCAAAAGGAGTGGAAAAGTTATTTAG 58.859 33.333 0.00 0.00 0.00 1.85
3711 3867 6.761242 GTGCAAAAGGAGTGGAAAAGTTATTT 59.239 34.615 0.00 0.00 0.00 1.40
3793 3960 6.971756 GGGACTCAAGTAACTCTATTCGTAAC 59.028 42.308 0.00 0.00 0.00 2.50
3798 3965 5.105310 TGCAGGGACTCAAGTAACTCTATTC 60.105 44.000 0.00 0.00 34.60 1.75
3886 4059 8.310382 CCAACCCACATCTATCTAGAAATCTAG 58.690 40.741 10.59 10.59 45.57 2.43
3965 4362 5.935945 TCAGTTCACTTCAGGGTCAAATTA 58.064 37.500 0.00 0.00 0.00 1.40
4001 4398 2.874701 GCCTGGCTGTACATTGTATGAG 59.125 50.000 12.43 1.24 0.00 2.90
4063 4486 2.358267 GACACCCACCAGTAGTAGATCG 59.642 54.545 0.00 0.00 0.00 3.69
4083 4506 1.565390 CCAAGATGGTCCAGCAGGGA 61.565 60.000 10.34 0.00 45.89 4.20
4084 4507 1.077212 CCAAGATGGTCCAGCAGGG 60.077 63.158 10.34 6.29 34.83 4.45
4085 4508 1.751927 GCCAAGATGGTCCAGCAGG 60.752 63.158 10.34 11.79 40.46 4.85
4086 4509 1.751927 GGCCAAGATGGTCCAGCAG 60.752 63.158 10.34 1.06 40.46 4.24
4087 4510 1.866483 ATGGCCAAGATGGTCCAGCA 61.866 55.000 10.96 0.00 42.76 4.41
4088 4511 0.685458 AATGGCCAAGATGGTCCAGC 60.685 55.000 10.96 0.00 42.76 4.85
4089 4512 1.108776 CAATGGCCAAGATGGTCCAG 58.891 55.000 10.96 3.21 42.76 3.86
4110 4533 1.180456 TCGTCCGGTTGCCTCTGTTA 61.180 55.000 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.