Multiple sequence alignment - TraesCS1D01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G164100 chr1D 100.000 5839 0 0 690 6528 234743150 234737312 0.000000e+00 10783.0
1 TraesCS1D01G164100 chr1D 100.000 425 0 0 1 425 234743839 234743415 0.000000e+00 785.0
2 TraesCS1D01G164100 chr1D 93.333 240 16 0 6288 6527 411746664 411746903 8.050000e-94 355.0
3 TraesCS1D01G164100 chr1A 94.441 5666 212 46 690 6278 312772274 312777913 0.000000e+00 8623.0
4 TraesCS1D01G164100 chr1A 91.483 317 11 3 125 425 312771585 312771901 7.830000e-114 422.0
5 TraesCS1D01G164100 chr1A 89.032 155 15 2 6290 6443 128047537 128047384 2.400000e-44 191.0
6 TraesCS1D01G164100 chr1A 93.617 94 6 0 6434 6527 128047155 128047062 2.450000e-29 141.0
7 TraesCS1D01G164100 chr1B 94.427 5652 182 57 690 6273 340375766 340370180 0.000000e+00 8569.0
8 TraesCS1D01G164100 chr1B 93.370 181 7 1 250 425 340376356 340376176 5.020000e-66 263.0
9 TraesCS1D01G164100 chr1B 97.030 101 3 0 125 225 340376453 340376353 3.130000e-38 171.0
10 TraesCS1D01G164100 chr1B 83.871 93 8 3 1 86 340376529 340376437 1.510000e-11 82.4
11 TraesCS1D01G164100 chr7B 92.617 921 51 9 1692 2610 64038534 64039439 0.000000e+00 1308.0
12 TraesCS1D01G164100 chr7B 95.600 750 29 2 3311 4058 64039558 64040305 0.000000e+00 1199.0
13 TraesCS1D01G164100 chr7B 89.339 666 32 12 1002 1641 64037886 64038538 0.000000e+00 800.0
14 TraesCS1D01G164100 chr7B 94.845 97 5 0 3067 3163 64039458 64039554 1.130000e-32 152.0
15 TraesCS1D01G164100 chr7A 94.545 495 23 2 3566 4058 635498627 635498135 0.000000e+00 761.0
16 TraesCS1D01G164100 chr7A 90.043 231 21 2 6297 6527 276145126 276145354 1.380000e-76 298.0
17 TraesCS1D01G164100 chr7A 95.122 41 2 0 83 123 624959184 624959224 1.520000e-06 65.8
18 TraesCS1D01G164100 chr7D 93.939 231 14 0 6297 6527 329810764 329810534 3.750000e-92 350.0
19 TraesCS1D01G164100 chr7D 91.667 240 18 1 6288 6527 257032737 257032974 1.360000e-86 331.0
20 TraesCS1D01G164100 chr7D 91.667 240 17 1 6288 6527 360353693 360353929 4.880000e-86 329.0
21 TraesCS1D01G164100 chr2B 87.649 251 20 3 6277 6527 129330822 129331061 1.390000e-71 281.0
22 TraesCS1D01G164100 chr4B 94.828 58 3 0 6470 6527 628298940 628298883 2.510000e-14 91.6
23 TraesCS1D01G164100 chr5B 90.909 44 3 1 6288 6331 71048866 71048908 2.540000e-04 58.4
24 TraesCS1D01G164100 chr3B 100.000 28 0 0 96 123 6179480 6179507 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G164100 chr1D 234737312 234743839 6527 True 5784.00 10783 100.00000 1 6528 2 chr1D.!!$R1 6527
1 TraesCS1D01G164100 chr1A 312771585 312777913 6328 False 4522.50 8623 92.96200 125 6278 2 chr1A.!!$F1 6153
2 TraesCS1D01G164100 chr1B 340370180 340376529 6349 True 2271.35 8569 92.17450 1 6273 4 chr1B.!!$R1 6272
3 TraesCS1D01G164100 chr7B 64037886 64040305 2419 False 864.75 1308 93.10025 1002 4058 4 chr7B.!!$F1 3056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1187 0.809241 CTGATTCCTCTGGAGCGCAC 60.809 60.0 11.47 1.97 31.21 5.34 F
2202 2449 0.458260 GAGTCCTCGAGAGCTTTCCC 59.542 60.0 15.71 0.00 0.00 3.97 F
2706 2962 0.383949 TCTCGCCTTTTGCCAACAAC 59.616 50.0 0.00 0.00 34.87 3.32 F
3798 4054 0.036164 ACAATGCTACCACTGCCGAA 59.964 50.0 0.00 0.00 0.00 4.30 F
4982 5259 0.263172 TGCTTCCTAGAGGAGAGGGG 59.737 60.0 0.00 0.00 46.36 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 2741 0.251297 TCATCCCTGGTGGTTTGCTG 60.251 55.0 0.00 0.00 34.77 4.41 R
3399 3655 0.388134 GTTCAGAACTAGCGACGCCA 60.388 55.0 17.79 0.72 0.00 5.69 R
3927 4183 0.392998 CGTGGGCCTTCTGCAGTAAT 60.393 55.0 14.67 0.00 43.89 1.89 R
5031 5308 0.398381 AAAAGGCCCAACAGCTCCAA 60.398 50.0 0.00 0.00 0.00 3.53 R
6292 6597 0.027586 GCAACGAACGGGCATATGTC 59.972 55.0 4.29 0.58 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.615588 ACCCTCTTTCTCACAAGAAGAG 57.384 45.455 5.57 5.57 42.36 2.85
23 24 4.283212 ACCCTCTTTCTCACAAGAAGAGAG 59.717 45.833 12.51 12.64 42.36 3.20
34 37 5.059161 CACAAGAAGAGAGAAACATGGACA 58.941 41.667 0.00 0.00 0.00 4.02
69 77 2.304761 CACCTCACTAACCCCTTTGCTA 59.695 50.000 0.00 0.00 0.00 3.49
70 78 2.983898 ACCTCACTAACCCCTTTGCTAA 59.016 45.455 0.00 0.00 0.00 3.09
71 79 3.396611 ACCTCACTAACCCCTTTGCTAAA 59.603 43.478 0.00 0.00 0.00 1.85
72 80 3.756963 CCTCACTAACCCCTTTGCTAAAC 59.243 47.826 0.00 0.00 0.00 2.01
73 81 3.756963 CTCACTAACCCCTTTGCTAAACC 59.243 47.826 0.00 0.00 0.00 3.27
74 82 3.138653 TCACTAACCCCTTTGCTAAACCA 59.861 43.478 0.00 0.00 0.00 3.67
75 83 3.506067 CACTAACCCCTTTGCTAAACCAG 59.494 47.826 0.00 0.00 0.00 4.00
88 96 4.686839 CTAAACCAGCAAAGAAGCTACC 57.313 45.455 0.00 0.00 44.54 3.18
89 97 2.656947 AACCAGCAAAGAAGCTACCA 57.343 45.000 0.00 0.00 44.54 3.25
90 98 1.897560 ACCAGCAAAGAAGCTACCAC 58.102 50.000 0.00 0.00 44.54 4.16
91 99 1.421646 ACCAGCAAAGAAGCTACCACT 59.578 47.619 0.00 0.00 44.54 4.00
92 100 2.158608 ACCAGCAAAGAAGCTACCACTT 60.159 45.455 0.00 0.00 44.54 3.16
93 101 2.227388 CCAGCAAAGAAGCTACCACTTG 59.773 50.000 0.00 0.00 44.54 3.16
94 102 3.141398 CAGCAAAGAAGCTACCACTTGA 58.859 45.455 0.00 0.00 44.54 3.02
95 103 3.058639 CAGCAAAGAAGCTACCACTTGAC 60.059 47.826 0.00 0.00 44.54 3.18
96 104 2.878406 GCAAAGAAGCTACCACTTGACA 59.122 45.455 0.00 0.00 0.00 3.58
97 105 3.503748 GCAAAGAAGCTACCACTTGACAT 59.496 43.478 0.00 0.00 0.00 3.06
98 106 4.614535 GCAAAGAAGCTACCACTTGACATG 60.615 45.833 0.00 0.00 0.00 3.21
99 107 4.623932 AAGAAGCTACCACTTGACATGA 57.376 40.909 0.00 0.00 0.00 3.07
100 108 4.199432 AGAAGCTACCACTTGACATGAG 57.801 45.455 0.00 0.00 0.00 2.90
101 109 3.580458 AGAAGCTACCACTTGACATGAGT 59.420 43.478 0.00 0.00 0.00 3.41
102 110 3.325293 AGCTACCACTTGACATGAGTG 57.675 47.619 0.00 2.52 43.19 3.51
103 111 2.899900 AGCTACCACTTGACATGAGTGA 59.100 45.455 13.20 0.00 45.72 3.41
104 112 3.517100 AGCTACCACTTGACATGAGTGAT 59.483 43.478 13.20 0.37 45.72 3.06
105 113 3.620374 GCTACCACTTGACATGAGTGATG 59.380 47.826 13.20 2.29 45.72 3.07
106 114 4.621510 GCTACCACTTGACATGAGTGATGA 60.622 45.833 13.20 0.00 45.72 2.92
107 115 3.935315 ACCACTTGACATGAGTGATGAG 58.065 45.455 13.20 1.40 45.72 2.90
108 116 2.676839 CCACTTGACATGAGTGATGAGC 59.323 50.000 13.20 0.00 45.72 4.26
109 117 3.597255 CACTTGACATGAGTGATGAGCT 58.403 45.455 7.13 0.00 45.72 4.09
110 118 4.382362 CCACTTGACATGAGTGATGAGCTA 60.382 45.833 13.20 0.00 45.72 3.32
111 119 5.358090 CACTTGACATGAGTGATGAGCTAT 58.642 41.667 7.13 0.00 45.72 2.97
112 120 5.462729 CACTTGACATGAGTGATGAGCTATC 59.537 44.000 7.13 0.00 45.72 2.08
113 121 5.363292 ACTTGACATGAGTGATGAGCTATCT 59.637 40.000 0.00 0.00 36.71 1.98
114 122 5.450592 TGACATGAGTGATGAGCTATCTC 57.549 43.478 0.00 0.00 39.78 2.75
232 243 4.314440 TCGGCAGGTCCACACAGC 62.314 66.667 0.00 0.00 34.01 4.40
233 244 4.320456 CGGCAGGTCCACACAGCT 62.320 66.667 0.00 0.00 34.01 4.24
270 289 1.748493 GTCAGCGAGATCAGTCTCCTT 59.252 52.381 0.00 0.00 46.67 3.36
408 432 8.106462 TCAATTGACCACCATTTTATAGACTCA 58.894 33.333 3.38 0.00 0.00 3.41
743 913 4.660938 GGTGTCACCCACTGGCCC 62.661 72.222 11.30 0.00 43.94 5.80
849 1019 2.654877 GCACAGCAATGCCAAGCT 59.345 55.556 0.00 0.00 42.94 3.74
977 1179 2.015587 GCTTCTTGGCTGATTCCTCTG 58.984 52.381 0.00 0.00 0.00 3.35
979 1181 1.956869 TCTTGGCTGATTCCTCTGGA 58.043 50.000 0.00 0.00 0.00 3.86
985 1187 0.809241 CTGATTCCTCTGGAGCGCAC 60.809 60.000 11.47 1.97 31.21 5.34
987 1189 2.932130 GATTCCTCTGGAGCGCACCC 62.932 65.000 21.62 16.21 31.21 4.61
1056 1264 1.576421 CAAGGCCGTGTTCAAGCTC 59.424 57.895 10.93 0.00 0.00 4.09
1213 1422 1.915078 CTGGGGTGGGAGTCCATGAC 61.915 65.000 12.30 4.09 46.09 3.06
1333 1542 4.785453 CACCAAGCTCCCCTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
1402 1619 0.736636 GTAAGCGGCCCCACATTAAC 59.263 55.000 0.00 0.00 0.00 2.01
1440 1657 0.790207 GCGCTCGATTTGTTCTGACA 59.210 50.000 0.00 0.00 0.00 3.58
1637 1873 1.566018 CGGCGTTTTCCTGTGACCTC 61.566 60.000 0.00 0.00 0.00 3.85
1683 1919 2.629137 TGATTTTGATGGTTGCTGCTGT 59.371 40.909 0.00 0.00 0.00 4.40
1688 1924 1.337703 TGATGGTTGCTGCTGTTGTTC 59.662 47.619 0.00 0.00 0.00 3.18
1690 1926 1.008538 GGTTGCTGCTGTTGTTCCG 60.009 57.895 0.00 0.00 0.00 4.30
1868 2114 6.166279 TCTCACATCAACCAGATTCACTTAC 58.834 40.000 0.00 0.00 33.72 2.34
1881 2128 6.037940 CAGATTCACTTACACATTGCTGCTAT 59.962 38.462 0.00 0.00 0.00 2.97
1897 2144 1.065102 GCTATCTGCATTGTGCCTGTG 59.935 52.381 0.00 0.00 44.23 3.66
1899 2146 1.171308 ATCTGCATTGTGCCTGTGTC 58.829 50.000 0.00 0.00 44.23 3.67
1900 2147 1.208358 CTGCATTGTGCCTGTGTCG 59.792 57.895 0.00 0.00 44.23 4.35
1901 2148 1.509644 CTGCATTGTGCCTGTGTCGT 61.510 55.000 0.00 0.00 44.23 4.34
1902 2149 1.100463 TGCATTGTGCCTGTGTCGTT 61.100 50.000 0.00 0.00 44.23 3.85
1903 2150 0.661187 GCATTGTGCCTGTGTCGTTG 60.661 55.000 0.00 0.00 37.42 4.10
1904 2151 0.661187 CATTGTGCCTGTGTCGTTGC 60.661 55.000 0.00 0.00 0.00 4.17
1906 2153 1.308783 TTGTGCCTGTGTCGTTGCAA 61.309 50.000 0.00 0.00 35.16 4.08
1907 2154 1.298339 GTGCCTGTGTCGTTGCAAC 60.298 57.895 19.89 19.89 35.16 4.17
1908 2155 2.331451 GCCTGTGTCGTTGCAACC 59.669 61.111 23.42 11.20 0.00 3.77
1910 2157 2.631428 CTGTGTCGTTGCAACCGG 59.369 61.111 23.42 10.89 0.00 5.28
1911 2158 1.885388 CTGTGTCGTTGCAACCGGA 60.885 57.895 23.42 13.13 0.00 5.14
1913 2160 0.816018 TGTGTCGTTGCAACCGGATT 60.816 50.000 23.42 0.00 0.00 3.01
1915 2162 0.533085 TGTCGTTGCAACCGGATTCA 60.533 50.000 23.42 8.51 0.00 2.57
1917 2164 1.199097 GTCGTTGCAACCGGATTCATT 59.801 47.619 23.42 0.00 0.00 2.57
1919 2166 3.075148 TCGTTGCAACCGGATTCATTTA 58.925 40.909 23.42 0.00 0.00 1.40
1920 2167 3.126171 TCGTTGCAACCGGATTCATTTAG 59.874 43.478 23.42 5.06 0.00 1.85
1921 2168 3.730662 CGTTGCAACCGGATTCATTTAGG 60.731 47.826 23.42 0.59 0.00 2.69
1922 2169 3.358111 TGCAACCGGATTCATTTAGGA 57.642 42.857 9.46 0.00 0.00 2.94
1923 2170 3.691575 TGCAACCGGATTCATTTAGGAA 58.308 40.909 9.46 0.00 0.00 3.36
1924 2171 3.442273 TGCAACCGGATTCATTTAGGAAC 59.558 43.478 9.46 0.00 0.00 3.62
1925 2172 3.181490 GCAACCGGATTCATTTAGGAACC 60.181 47.826 9.46 0.00 0.00 3.62
1926 2173 2.914059 ACCGGATTCATTTAGGAACCG 58.086 47.619 9.46 0.00 39.23 4.44
1934 2181 0.679960 ATTTAGGAACCGGTGCCTGC 60.680 55.000 40.46 16.53 35.73 4.85
2169 2416 4.905429 TGTGCATGTAAGTAACCAGTGAT 58.095 39.130 0.00 0.00 0.00 3.06
2171 2418 4.094887 GTGCATGTAAGTAACCAGTGATGG 59.905 45.833 0.00 0.00 0.00 3.51
2172 2419 4.261801 GCATGTAAGTAACCAGTGATGGT 58.738 43.478 0.00 0.00 45.55 3.55
2182 2429 1.210478 CCAGTGATGGTTAGTGGGGAG 59.790 57.143 0.00 0.00 35.44 4.30
2202 2449 0.458260 GAGTCCTCGAGAGCTTTCCC 59.542 60.000 15.71 0.00 0.00 3.97
2204 2451 1.285373 AGTCCTCGAGAGCTTTCCCTA 59.715 52.381 15.71 0.00 0.00 3.53
2209 2456 3.462021 CTCGAGAGCTTTCCCTATTTGG 58.538 50.000 6.58 0.00 0.00 3.28
2311 2558 5.434352 AAGAAAAAGGGAAGCTACGTTTC 57.566 39.130 0.00 0.00 0.00 2.78
2350 2598 1.514678 GGTCACATTTGCTGCGTGGA 61.515 55.000 5.73 0.00 0.00 4.02
2415 2663 4.944317 GGGGGAGAATTTAGAACTGAACAG 59.056 45.833 0.00 0.00 0.00 3.16
2439 2687 5.049828 TGCATGTACTATGTCATCTTTCCG 58.950 41.667 0.00 0.00 0.00 4.30
2493 2741 4.422073 TGTACAGGATGGATTGGTGATC 57.578 45.455 0.00 0.00 43.62 2.92
2706 2962 0.383949 TCTCGCCTTTTGCCAACAAC 59.616 50.000 0.00 0.00 34.87 3.32
2712 2968 0.459237 CTTTTGCCAACAACGCCACA 60.459 50.000 0.00 0.00 34.87 4.17
2772 3028 0.532417 CAGCTCCTGATGCTAGCACC 60.532 60.000 22.07 11.97 38.92 5.01
2916 3172 5.585390 CAGACACTCAGAAAGCAAATTGTT 58.415 37.500 0.00 0.00 0.00 2.83
3012 3268 3.452627 GAGAATGTGAAGGCCTTAGAGGA 59.547 47.826 20.54 0.94 37.67 3.71
3017 3273 3.198635 TGTGAAGGCCTTAGAGGAATGAG 59.801 47.826 20.54 0.00 37.67 2.90
3063 3319 4.504858 GATCAGGTAAACGGTTGTCAGAT 58.495 43.478 0.00 0.00 0.00 2.90
3213 3469 5.356190 TGTGAAGGATCTTGATGAAATGCTC 59.644 40.000 0.00 0.00 0.00 4.26
3399 3655 4.025040 TGCATTGGTGAAGAAGAGTGAT 57.975 40.909 0.00 0.00 0.00 3.06
3403 3659 1.338105 TGGTGAAGAAGAGTGATGGCG 60.338 52.381 0.00 0.00 0.00 5.69
3651 3907 1.734465 CTTGAGGCCAATGTCGAGAAC 59.266 52.381 5.01 0.00 0.00 3.01
3798 4054 0.036164 ACAATGCTACCACTGCCGAA 59.964 50.000 0.00 0.00 0.00 4.30
3823 4079 5.555966 GACTTCAGGAGGAATTCAAGAGTT 58.444 41.667 7.93 0.00 35.77 3.01
3863 4119 2.030371 TGCTTTCAGTGCCAATGAACA 58.970 42.857 7.14 0.55 36.44 3.18
3891 4147 1.067516 GTGCAAGCAAGAAAAGAGGCA 59.932 47.619 0.00 0.00 0.00 4.75
3927 4183 2.811873 GCAGAAGAGCCAGTTGGAAGAA 60.812 50.000 1.45 0.00 37.39 2.52
4023 4281 5.070685 ACCCTAGTGGATTTCAAGTCAAAC 58.929 41.667 4.45 0.00 38.00 2.93
4544 4802 5.345202 GTGTCACTTCAGATACAACGGTAAG 59.655 44.000 0.00 0.00 32.19 2.34
4573 4831 9.168451 TCGAAAACCAGATATATTTGTAGCAAA 57.832 29.630 2.84 0.00 0.00 3.68
4578 4836 8.807948 ACCAGATATATTTGTAGCAAAACAGT 57.192 30.769 2.84 0.00 0.00 3.55
4791 5065 5.567430 AGGTGTACCTTCCCTTTTGTATTC 58.433 41.667 0.00 0.00 46.09 1.75
4982 5259 0.263172 TGCTTCCTAGAGGAGAGGGG 59.737 60.000 0.00 0.00 46.36 4.79
4999 5276 0.613012 GGGCAGCTTTGAATGGAGGT 60.613 55.000 0.00 0.00 0.00 3.85
5013 5290 2.203998 AGGTCCCCACCAGTGAGG 60.204 66.667 0.00 0.00 46.68 3.86
5031 5308 7.160049 CAGTGAGGATATGATATTTCAGTGCT 58.840 38.462 16.08 0.00 34.73 4.40
5036 5313 7.166851 AGGATATGATATTTCAGTGCTTGGAG 58.833 38.462 0.00 0.00 34.73 3.86
5174 5454 2.027605 CGACACCGTCAGCACTGT 59.972 61.111 0.00 0.00 32.09 3.55
5175 5455 2.302952 CGACACCGTCAGCACTGTG 61.303 63.158 2.76 2.76 42.03 3.66
5177 5457 0.941463 GACACCGTCAGCACTGTGAG 60.941 60.000 12.86 3.06 39.47 3.51
5246 5526 7.222031 CGACACGAGGTTATCATCTTGAATTAA 59.778 37.037 0.00 0.00 30.28 1.40
5276 5556 5.163893 CGCATTCGGTCTTCTTAGCTTTAAA 60.164 40.000 0.00 0.00 0.00 1.52
5316 5599 4.331168 GGAGCAAATGTGACTGACATACTC 59.669 45.833 0.00 0.00 45.12 2.59
5322 5605 2.893489 TGTGACTGACATACTCTGCTGT 59.107 45.455 0.00 0.00 0.00 4.40
5346 5630 1.379044 ATTTTCTCGCTGCCAGGGG 60.379 57.895 9.07 0.16 0.00 4.79
5347 5631 2.142292 ATTTTCTCGCTGCCAGGGGT 62.142 55.000 9.07 0.00 0.00 4.95
5530 5814 2.772568 AGAACTCGCTGAGATGATCG 57.227 50.000 11.64 0.00 33.32 3.69
5533 5817 2.987413 ACTCGCTGAGATGATCGATC 57.013 50.000 18.72 18.72 33.32 3.69
5534 5818 1.539388 ACTCGCTGAGATGATCGATCC 59.461 52.381 22.31 8.20 33.32 3.36
5535 5819 1.538950 CTCGCTGAGATGATCGATCCA 59.461 52.381 22.31 11.80 0.00 3.41
5537 5821 2.094854 TCGCTGAGATGATCGATCCATG 60.095 50.000 22.31 8.66 0.00 3.66
5599 5883 3.832490 TCAGGATTAGGTGATGATACCCG 59.168 47.826 0.00 0.00 41.83 5.28
5692 5982 3.137385 TTGCAGAGGCCAGGCAAGT 62.137 57.895 20.49 0.00 42.12 3.16
5856 6146 1.406205 CCCAGTGTGTGTGTGTGTGTA 60.406 52.381 0.00 0.00 0.00 2.90
5948 6243 6.161855 AGGGACAATTTGAACCTTTTCTTC 57.838 37.500 2.79 0.00 32.36 2.87
5959 6254 6.119536 TGAACCTTTTCTTCTGAAGCAACTA 58.880 36.000 12.54 0.00 33.28 2.24
6016 6311 2.693591 CCTGTCTATCTGGCCGAAGTTA 59.306 50.000 0.00 0.00 0.00 2.24
6030 6325 4.379374 CGAAGTTACACGGAAATTTCGT 57.621 40.909 11.95 10.31 39.65 3.85
6181 6486 1.828660 CCTATCTCCGTCCAGGCGT 60.829 63.158 3.11 0.00 40.77 5.68
6275 6580 1.133199 TCATCCCAGGTGCCAGTTTTT 60.133 47.619 0.00 0.00 0.00 1.94
6300 6605 9.601217 TTTTAAAGAGAGAACTAGGACATATGC 57.399 33.333 1.58 0.00 0.00 3.14
6301 6606 5.799827 AAGAGAGAACTAGGACATATGCC 57.200 43.478 1.58 5.36 0.00 4.40
6302 6607 4.156477 AGAGAGAACTAGGACATATGCCC 58.844 47.826 1.58 0.02 0.00 5.36
6303 6608 2.894126 AGAGAACTAGGACATATGCCCG 59.106 50.000 1.58 2.71 0.00 6.13
6304 6609 2.628657 GAGAACTAGGACATATGCCCGT 59.371 50.000 1.58 3.28 0.00 5.28
6305 6610 3.039011 AGAACTAGGACATATGCCCGTT 58.961 45.455 1.58 10.80 0.00 4.44
6306 6611 3.069729 AGAACTAGGACATATGCCCGTTC 59.930 47.826 23.29 23.29 36.96 3.95
6307 6612 1.340248 ACTAGGACATATGCCCGTTCG 59.660 52.381 1.58 0.00 0.00 3.95
6308 6613 1.340248 CTAGGACATATGCCCGTTCGT 59.660 52.381 1.58 0.00 0.00 3.85
6309 6614 0.539986 AGGACATATGCCCGTTCGTT 59.460 50.000 1.58 0.00 0.00 3.85
6310 6615 0.655733 GGACATATGCCCGTTCGTTG 59.344 55.000 1.58 0.00 0.00 4.10
6311 6616 0.027586 GACATATGCCCGTTCGTTGC 59.972 55.000 1.58 0.00 0.00 4.17
6312 6617 0.675208 ACATATGCCCGTTCGTTGCA 60.675 50.000 1.58 8.54 39.68 4.08
6313 6618 0.449786 CATATGCCCGTTCGTTGCAA 59.550 50.000 0.00 0.00 38.69 4.08
6314 6619 1.065401 CATATGCCCGTTCGTTGCAAT 59.935 47.619 0.59 0.00 38.69 3.56
6315 6620 0.449786 TATGCCCGTTCGTTGCAATG 59.550 50.000 12.66 12.66 38.69 2.82
6316 6621 2.126502 GCCCGTTCGTTGCAATGG 60.127 61.111 18.37 6.47 32.76 3.16
6317 6622 2.566010 CCCGTTCGTTGCAATGGG 59.434 61.111 18.37 8.89 44.61 4.00
6318 6623 3.661911 CCGTTCGTTGCAATGGGA 58.338 55.556 18.37 6.28 0.00 4.37
6319 6624 1.953017 CCGTTCGTTGCAATGGGAA 59.047 52.632 18.37 11.80 0.00 3.97
6320 6625 0.312416 CCGTTCGTTGCAATGGGAAA 59.688 50.000 18.37 3.09 0.00 3.13
6321 6626 1.269309 CCGTTCGTTGCAATGGGAAAA 60.269 47.619 18.37 2.73 0.00 2.29
6322 6627 2.464865 CGTTCGTTGCAATGGGAAAAA 58.535 42.857 18.37 2.35 0.00 1.94
6323 6628 3.056304 CGTTCGTTGCAATGGGAAAAAT 58.944 40.909 18.37 0.00 0.00 1.82
6324 6629 4.230657 CGTTCGTTGCAATGGGAAAAATA 58.769 39.130 18.37 0.00 0.00 1.40
6325 6630 4.681942 CGTTCGTTGCAATGGGAAAAATAA 59.318 37.500 18.37 0.18 0.00 1.40
6326 6631 5.175856 CGTTCGTTGCAATGGGAAAAATAAA 59.824 36.000 18.37 0.00 0.00 1.40
6327 6632 6.128688 CGTTCGTTGCAATGGGAAAAATAAAT 60.129 34.615 18.37 0.00 0.00 1.40
6328 6633 7.570324 CGTTCGTTGCAATGGGAAAAATAAATT 60.570 33.333 18.37 0.00 0.00 1.82
6329 6634 7.126726 TCGTTGCAATGGGAAAAATAAATTG 57.873 32.000 18.37 0.00 0.00 2.32
6330 6635 6.148480 TCGTTGCAATGGGAAAAATAAATTGG 59.852 34.615 18.37 0.00 0.00 3.16
6331 6636 5.893897 TGCAATGGGAAAAATAAATTGGC 57.106 34.783 0.00 0.00 0.00 4.52
6332 6637 5.568392 TGCAATGGGAAAAATAAATTGGCT 58.432 33.333 0.00 0.00 0.00 4.75
6333 6638 6.715280 TGCAATGGGAAAAATAAATTGGCTA 58.285 32.000 0.00 0.00 0.00 3.93
6334 6639 6.822676 TGCAATGGGAAAAATAAATTGGCTAG 59.177 34.615 0.00 0.00 0.00 3.42
6335 6640 6.238456 GCAATGGGAAAAATAAATTGGCTAGC 60.238 38.462 6.04 6.04 0.00 3.42
6336 6641 6.558488 ATGGGAAAAATAAATTGGCTAGCA 57.442 33.333 18.24 0.00 0.00 3.49
6337 6642 6.558488 TGGGAAAAATAAATTGGCTAGCAT 57.442 33.333 18.24 0.00 0.00 3.79
6338 6643 6.956497 TGGGAAAAATAAATTGGCTAGCATT 58.044 32.000 18.24 5.72 0.00 3.56
6339 6644 8.083828 TGGGAAAAATAAATTGGCTAGCATTA 57.916 30.769 18.24 10.10 0.00 1.90
6340 6645 8.713036 TGGGAAAAATAAATTGGCTAGCATTAT 58.287 29.630 18.24 11.85 0.00 1.28
6341 6646 8.992073 GGGAAAAATAAATTGGCTAGCATTATG 58.008 33.333 18.24 0.00 0.00 1.90
6342 6647 9.762933 GGAAAAATAAATTGGCTAGCATTATGA 57.237 29.630 18.24 0.00 0.00 2.15
6349 6654 7.534723 AATTGGCTAGCATTATGATCAATGT 57.465 32.000 18.24 3.31 38.04 2.71
6350 6655 6.564709 TTGGCTAGCATTATGATCAATGTC 57.435 37.500 18.24 0.00 38.04 3.06
6351 6656 4.692155 TGGCTAGCATTATGATCAATGTCG 59.308 41.667 18.24 0.00 38.04 4.35
6352 6657 4.436584 GGCTAGCATTATGATCAATGTCGC 60.437 45.833 18.24 4.64 38.04 5.19
6353 6658 4.391216 GCTAGCATTATGATCAATGTCGCT 59.609 41.667 10.63 7.33 38.04 4.93
6354 6659 5.578336 GCTAGCATTATGATCAATGTCGCTA 59.422 40.000 10.63 8.10 38.04 4.26
6355 6660 5.852738 AGCATTATGATCAATGTCGCTAC 57.147 39.130 0.00 0.00 38.04 3.58
6356 6661 5.299949 AGCATTATGATCAATGTCGCTACA 58.700 37.500 0.00 0.00 38.04 2.74
6357 6662 5.178252 AGCATTATGATCAATGTCGCTACAC 59.822 40.000 0.00 0.00 38.78 2.90
6358 6663 5.615544 GCATTATGATCAATGTCGCTACACC 60.616 44.000 0.00 0.00 38.78 4.16
6359 6664 3.541996 ATGATCAATGTCGCTACACCA 57.458 42.857 0.00 0.00 38.78 4.17
6360 6665 3.326836 TGATCAATGTCGCTACACCAA 57.673 42.857 0.00 0.00 38.78 3.67
6361 6666 3.669536 TGATCAATGTCGCTACACCAAA 58.330 40.909 0.00 0.00 38.78 3.28
6362 6667 4.068599 TGATCAATGTCGCTACACCAAAA 58.931 39.130 0.00 0.00 38.78 2.44
6363 6668 4.699735 TGATCAATGTCGCTACACCAAAAT 59.300 37.500 0.00 0.00 38.78 1.82
6364 6669 4.418013 TCAATGTCGCTACACCAAAATG 57.582 40.909 0.00 0.00 38.78 2.32
6365 6670 2.916716 CAATGTCGCTACACCAAAATGC 59.083 45.455 0.00 0.00 38.78 3.56
6366 6671 0.878416 TGTCGCTACACCAAAATGCC 59.122 50.000 0.00 0.00 0.00 4.40
6367 6672 1.165270 GTCGCTACACCAAAATGCCT 58.835 50.000 0.00 0.00 0.00 4.75
6368 6673 2.289756 TGTCGCTACACCAAAATGCCTA 60.290 45.455 0.00 0.00 0.00 3.93
6369 6674 2.095372 GTCGCTACACCAAAATGCCTAC 59.905 50.000 0.00 0.00 0.00 3.18
6370 6675 1.400494 CGCTACACCAAAATGCCTACC 59.600 52.381 0.00 0.00 0.00 3.18
6371 6676 2.442413 GCTACACCAAAATGCCTACCA 58.558 47.619 0.00 0.00 0.00 3.25
6372 6677 2.423538 GCTACACCAAAATGCCTACCAG 59.576 50.000 0.00 0.00 0.00 4.00
6373 6678 2.675658 ACACCAAAATGCCTACCAGT 57.324 45.000 0.00 0.00 0.00 4.00
6374 6679 3.799432 ACACCAAAATGCCTACCAGTA 57.201 42.857 0.00 0.00 0.00 2.74
6375 6680 4.107127 ACACCAAAATGCCTACCAGTAA 57.893 40.909 0.00 0.00 0.00 2.24
6376 6681 3.824443 ACACCAAAATGCCTACCAGTAAC 59.176 43.478 0.00 0.00 0.00 2.50
6377 6682 3.823873 CACCAAAATGCCTACCAGTAACA 59.176 43.478 0.00 0.00 0.00 2.41
6378 6683 3.824443 ACCAAAATGCCTACCAGTAACAC 59.176 43.478 0.00 0.00 0.00 3.32
6379 6684 3.119990 CCAAAATGCCTACCAGTAACACG 60.120 47.826 0.00 0.00 0.00 4.49
6380 6685 3.688694 AAATGCCTACCAGTAACACGA 57.311 42.857 0.00 0.00 0.00 4.35
6381 6686 2.667473 ATGCCTACCAGTAACACGAC 57.333 50.000 0.00 0.00 0.00 4.34
6382 6687 1.330234 TGCCTACCAGTAACACGACA 58.670 50.000 0.00 0.00 0.00 4.35
6383 6688 1.897133 TGCCTACCAGTAACACGACAT 59.103 47.619 0.00 0.00 0.00 3.06
6384 6689 2.300723 TGCCTACCAGTAACACGACATT 59.699 45.455 0.00 0.00 0.00 2.71
6385 6690 2.928116 GCCTACCAGTAACACGACATTC 59.072 50.000 0.00 0.00 0.00 2.67
6386 6691 3.176708 CCTACCAGTAACACGACATTCG 58.823 50.000 0.00 0.00 46.93 3.34
6387 6692 3.119743 CCTACCAGTAACACGACATTCGA 60.120 47.826 1.94 0.00 43.74 3.71
6388 6693 3.374220 ACCAGTAACACGACATTCGAA 57.626 42.857 0.00 0.00 43.74 3.71
6389 6694 3.054878 ACCAGTAACACGACATTCGAAC 58.945 45.455 0.00 0.00 43.74 3.95
6390 6695 3.054166 CCAGTAACACGACATTCGAACA 58.946 45.455 0.00 0.00 43.74 3.18
6391 6696 3.121126 CCAGTAACACGACATTCGAACAC 60.121 47.826 0.00 0.00 43.74 3.32
6392 6697 3.734231 CAGTAACACGACATTCGAACACT 59.266 43.478 0.00 0.00 43.74 3.55
6393 6698 3.734231 AGTAACACGACATTCGAACACTG 59.266 43.478 0.00 0.00 43.74 3.66
6394 6699 2.502213 ACACGACATTCGAACACTGA 57.498 45.000 0.00 0.00 43.74 3.41
6395 6700 2.124903 ACACGACATTCGAACACTGAC 58.875 47.619 0.00 0.00 43.74 3.51
6396 6701 2.124122 CACGACATTCGAACACTGACA 58.876 47.619 0.00 0.00 43.74 3.58
6397 6702 2.153817 CACGACATTCGAACACTGACAG 59.846 50.000 0.00 0.00 43.74 3.51
6398 6703 1.721389 CGACATTCGAACACTGACAGG 59.279 52.381 7.51 0.00 43.74 4.00
6399 6704 1.461127 GACATTCGAACACTGACAGGC 59.539 52.381 7.51 0.00 0.00 4.85
6400 6705 0.439985 CATTCGAACACTGACAGGCG 59.560 55.000 7.51 5.30 0.00 5.52
6401 6706 0.670546 ATTCGAACACTGACAGGCGG 60.671 55.000 7.51 0.00 0.00 6.13
6402 6707 3.414700 CGAACACTGACAGGCGGC 61.415 66.667 7.51 0.00 0.00 6.53
6403 6708 2.280797 GAACACTGACAGGCGGCA 60.281 61.111 13.08 0.00 0.00 5.69
6404 6709 2.281070 AACACTGACAGGCGGCAG 60.281 61.111 13.08 5.57 38.10 4.85
6405 6710 2.715532 GAACACTGACAGGCGGCAGA 62.716 60.000 17.05 0.00 36.07 4.26
6406 6711 2.433838 CACTGACAGGCGGCAGAG 60.434 66.667 17.05 7.12 36.07 3.35
6407 6712 2.601666 ACTGACAGGCGGCAGAGA 60.602 61.111 17.05 0.00 36.07 3.10
6408 6713 2.183811 CTGACAGGCGGCAGAGAG 59.816 66.667 13.08 0.70 34.06 3.20
6409 6714 2.601666 TGACAGGCGGCAGAGAGT 60.602 61.111 13.08 0.82 0.00 3.24
6410 6715 2.183046 GACAGGCGGCAGAGAGTC 59.817 66.667 13.08 7.23 0.00 3.36
6418 6723 4.606071 GCAGAGAGTCGCCAATGT 57.394 55.556 0.00 0.00 0.00 2.71
6419 6724 2.846371 GCAGAGAGTCGCCAATGTT 58.154 52.632 0.00 0.00 0.00 2.71
6420 6725 1.160137 GCAGAGAGTCGCCAATGTTT 58.840 50.000 0.00 0.00 0.00 2.83
6421 6726 2.346803 GCAGAGAGTCGCCAATGTTTA 58.653 47.619 0.00 0.00 0.00 2.01
6422 6727 2.349886 GCAGAGAGTCGCCAATGTTTAG 59.650 50.000 0.00 0.00 0.00 1.85
6423 6728 3.849911 CAGAGAGTCGCCAATGTTTAGA 58.150 45.455 0.00 0.00 0.00 2.10
6424 6729 4.245660 CAGAGAGTCGCCAATGTTTAGAA 58.754 43.478 0.00 0.00 0.00 2.10
6425 6730 4.690748 CAGAGAGTCGCCAATGTTTAGAAA 59.309 41.667 0.00 0.00 0.00 2.52
6426 6731 4.932200 AGAGAGTCGCCAATGTTTAGAAAG 59.068 41.667 0.00 0.00 0.00 2.62
6427 6732 4.894784 AGAGTCGCCAATGTTTAGAAAGA 58.105 39.130 0.00 0.00 0.00 2.52
6428 6733 5.305585 AGAGTCGCCAATGTTTAGAAAGAA 58.694 37.500 0.00 0.00 0.00 2.52
6429 6734 5.763204 AGAGTCGCCAATGTTTAGAAAGAAA 59.237 36.000 0.00 0.00 0.00 2.52
6430 6735 6.262273 AGAGTCGCCAATGTTTAGAAAGAAAA 59.738 34.615 0.00 0.00 0.00 2.29
6431 6736 6.801575 AGTCGCCAATGTTTAGAAAGAAAAA 58.198 32.000 0.00 0.00 0.00 1.94
6432 6737 6.918022 AGTCGCCAATGTTTAGAAAGAAAAAG 59.082 34.615 0.00 0.00 0.00 2.27
6433 6738 6.143919 GTCGCCAATGTTTAGAAAGAAAAAGG 59.856 38.462 0.00 0.00 0.00 3.11
6434 6739 5.983118 CGCCAATGTTTAGAAAGAAAAAGGT 59.017 36.000 0.00 0.00 0.00 3.50
6435 6740 7.013464 TCGCCAATGTTTAGAAAGAAAAAGGTA 59.987 33.333 0.00 0.00 0.00 3.08
6436 6741 7.650104 CGCCAATGTTTAGAAAGAAAAAGGTAA 59.350 33.333 0.00 0.00 0.00 2.85
6437 6742 9.489084 GCCAATGTTTAGAAAGAAAAAGGTAAT 57.511 29.630 0.00 0.00 0.00 1.89
6442 6747 9.074576 TGTTTAGAAAGAAAAAGGTAATCCTCC 57.925 33.333 0.00 0.00 44.35 4.30
6443 6748 7.916914 TTAGAAAGAAAAAGGTAATCCTCCG 57.083 36.000 0.00 0.00 44.35 4.63
6444 6749 4.700692 AGAAAGAAAAAGGTAATCCTCCGC 59.299 41.667 0.00 0.00 44.35 5.54
6445 6750 3.713826 AGAAAAAGGTAATCCTCCGCA 57.286 42.857 0.00 0.00 44.35 5.69
6446 6751 3.344515 AGAAAAAGGTAATCCTCCGCAC 58.655 45.455 0.00 0.00 44.35 5.34
6447 6752 2.871096 AAAAGGTAATCCTCCGCACA 57.129 45.000 0.00 0.00 44.35 4.57
6448 6753 2.109425 AAAGGTAATCCTCCGCACAC 57.891 50.000 0.00 0.00 44.35 3.82
6449 6754 0.108329 AAGGTAATCCTCCGCACACG 60.108 55.000 0.00 0.00 44.35 4.49
6450 6755 0.968901 AGGTAATCCTCCGCACACGA 60.969 55.000 0.00 0.00 40.58 4.35
6451 6756 0.804933 GGTAATCCTCCGCACACGAC 60.805 60.000 0.00 0.00 43.93 4.34
6452 6757 0.108992 GTAATCCTCCGCACACGACA 60.109 55.000 0.00 0.00 43.93 4.35
6453 6758 0.821517 TAATCCTCCGCACACGACAT 59.178 50.000 0.00 0.00 43.93 3.06
6454 6759 0.460284 AATCCTCCGCACACGACATC 60.460 55.000 0.00 0.00 43.93 3.06
6455 6760 2.613739 ATCCTCCGCACACGACATCG 62.614 60.000 0.00 0.00 43.93 3.84
6456 6761 2.178273 CTCCGCACACGACATCGA 59.822 61.111 8.54 0.00 43.93 3.59
6457 6762 2.126618 TCCGCACACGACATCGAC 60.127 61.111 8.54 0.00 43.93 4.20
6458 6763 2.430075 CCGCACACGACATCGACA 60.430 61.111 8.54 0.00 43.93 4.35
6459 6764 2.716828 CCGCACACGACATCGACAC 61.717 63.158 8.54 0.00 43.93 3.67
6460 6765 2.014018 CGCACACGACATCGACACA 61.014 57.895 8.54 0.00 43.93 3.72
6461 6766 1.487231 GCACACGACATCGACACAC 59.513 57.895 8.54 0.00 43.02 3.82
6462 6767 1.212455 GCACACGACATCGACACACA 61.212 55.000 8.54 0.00 43.02 3.72
6463 6768 1.204792 CACACGACATCGACACACAA 58.795 50.000 8.54 0.00 43.02 3.33
6464 6769 1.071502 CACACGACATCGACACACAAC 60.072 52.381 8.54 0.00 43.02 3.32
6465 6770 0.506932 CACGACATCGACACACAACC 59.493 55.000 8.54 0.00 43.02 3.77
6466 6771 0.103390 ACGACATCGACACACAACCA 59.897 50.000 8.54 0.00 43.02 3.67
6467 6772 0.506932 CGACATCGACACACAACCAC 59.493 55.000 0.00 0.00 43.02 4.16
6468 6773 1.577468 GACATCGACACACAACCACA 58.423 50.000 0.00 0.00 0.00 4.17
6469 6774 1.260561 GACATCGACACACAACCACAC 59.739 52.381 0.00 0.00 0.00 3.82
6470 6775 1.294857 CATCGACACACAACCACACA 58.705 50.000 0.00 0.00 0.00 3.72
6471 6776 1.003972 CATCGACACACAACCACACAC 60.004 52.381 0.00 0.00 0.00 3.82
6472 6777 1.079317 TCGACACACAACCACACACG 61.079 55.000 0.00 0.00 0.00 4.49
6473 6778 1.355796 CGACACACAACCACACACGT 61.356 55.000 0.00 0.00 0.00 4.49
6474 6779 0.372334 GACACACAACCACACACGTC 59.628 55.000 0.00 0.00 0.00 4.34
6475 6780 1.022451 ACACACAACCACACACGTCC 61.022 55.000 0.00 0.00 0.00 4.79
6476 6781 1.021920 CACACAACCACACACGTCCA 61.022 55.000 0.00 0.00 0.00 4.02
6477 6782 0.107410 ACACAACCACACACGTCCAT 60.107 50.000 0.00 0.00 0.00 3.41
6478 6783 0.307453 CACAACCACACACGTCCATG 59.693 55.000 0.00 0.00 0.00 3.66
6479 6784 0.107410 ACAACCACACACGTCCATGT 60.107 50.000 0.00 0.00 0.00 3.21
6480 6785 1.021202 CAACCACACACGTCCATGTT 58.979 50.000 0.00 0.00 0.00 2.71
6481 6786 1.403679 CAACCACACACGTCCATGTTT 59.596 47.619 0.00 0.00 0.00 2.83
6482 6787 1.305201 ACCACACACGTCCATGTTTC 58.695 50.000 0.00 0.00 0.00 2.78
6483 6788 0.591170 CCACACACGTCCATGTTTCC 59.409 55.000 0.00 0.00 0.00 3.13
6484 6789 1.593196 CACACACGTCCATGTTTCCT 58.407 50.000 0.00 0.00 0.00 3.36
6485 6790 1.946768 CACACACGTCCATGTTTCCTT 59.053 47.619 0.00 0.00 0.00 3.36
6486 6791 2.032030 CACACACGTCCATGTTTCCTTC 60.032 50.000 0.00 0.00 0.00 3.46
6487 6792 1.535462 CACACGTCCATGTTTCCTTCC 59.465 52.381 0.00 0.00 0.00 3.46
6488 6793 1.420138 ACACGTCCATGTTTCCTTCCT 59.580 47.619 0.00 0.00 0.00 3.36
6489 6794 2.158667 ACACGTCCATGTTTCCTTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
6490 6795 2.226437 CACGTCCATGTTTCCTTCCTTG 59.774 50.000 0.00 0.00 0.00 3.61
6491 6796 1.200020 CGTCCATGTTTCCTTCCTTGC 59.800 52.381 0.00 0.00 0.00 4.01
6492 6797 2.238521 GTCCATGTTTCCTTCCTTGCA 58.761 47.619 0.00 0.00 0.00 4.08
6493 6798 2.827921 GTCCATGTTTCCTTCCTTGCAT 59.172 45.455 0.00 0.00 0.00 3.96
6494 6799 2.827322 TCCATGTTTCCTTCCTTGCATG 59.173 45.455 0.00 0.00 35.02 4.06
6495 6800 2.564062 CCATGTTTCCTTCCTTGCATGT 59.436 45.455 0.00 0.00 33.85 3.21
6496 6801 3.007182 CCATGTTTCCTTCCTTGCATGTT 59.993 43.478 0.00 0.00 33.85 2.71
6497 6802 4.240096 CATGTTTCCTTCCTTGCATGTTC 58.760 43.478 0.00 0.00 31.84 3.18
6498 6803 2.627699 TGTTTCCTTCCTTGCATGTTCC 59.372 45.455 0.00 0.00 0.00 3.62
6499 6804 2.893489 GTTTCCTTCCTTGCATGTTCCT 59.107 45.455 0.00 0.00 0.00 3.36
6500 6805 2.978156 TCCTTCCTTGCATGTTCCTT 57.022 45.000 0.00 0.00 0.00 3.36
6501 6806 2.795329 TCCTTCCTTGCATGTTCCTTC 58.205 47.619 0.00 0.00 0.00 3.46
6502 6807 1.821136 CCTTCCTTGCATGTTCCTTCC 59.179 52.381 0.00 0.00 0.00 3.46
6503 6808 2.517959 CTTCCTTGCATGTTCCTTCCA 58.482 47.619 0.00 0.00 0.00 3.53
6504 6809 2.205022 TCCTTGCATGTTCCTTCCAG 57.795 50.000 0.00 0.00 0.00 3.86
6505 6810 0.529378 CCTTGCATGTTCCTTCCAGC 59.471 55.000 0.00 0.00 0.00 4.85
6506 6811 0.529378 CTTGCATGTTCCTTCCAGCC 59.471 55.000 0.00 0.00 0.00 4.85
6507 6812 0.112995 TTGCATGTTCCTTCCAGCCT 59.887 50.000 0.00 0.00 0.00 4.58
6508 6813 0.991146 TGCATGTTCCTTCCAGCCTA 59.009 50.000 0.00 0.00 0.00 3.93
6509 6814 1.340017 TGCATGTTCCTTCCAGCCTAC 60.340 52.381 0.00 0.00 0.00 3.18
6510 6815 1.340017 GCATGTTCCTTCCAGCCTACA 60.340 52.381 0.00 0.00 0.00 2.74
6511 6816 2.359900 CATGTTCCTTCCAGCCTACAC 58.640 52.381 0.00 0.00 0.00 2.90
6512 6817 1.429930 TGTTCCTTCCAGCCTACACA 58.570 50.000 0.00 0.00 0.00 3.72
6513 6818 1.071699 TGTTCCTTCCAGCCTACACAC 59.928 52.381 0.00 0.00 0.00 3.82
6514 6819 1.071699 GTTCCTTCCAGCCTACACACA 59.928 52.381 0.00 0.00 0.00 3.72
6515 6820 0.685097 TCCTTCCAGCCTACACACAC 59.315 55.000 0.00 0.00 0.00 3.82
6516 6821 0.396435 CCTTCCAGCCTACACACACA 59.604 55.000 0.00 0.00 0.00 3.72
6517 6822 1.202758 CCTTCCAGCCTACACACACAA 60.203 52.381 0.00 0.00 0.00 3.33
6518 6823 2.553028 CCTTCCAGCCTACACACACAAT 60.553 50.000 0.00 0.00 0.00 2.71
6519 6824 2.472695 TCCAGCCTACACACACAATC 57.527 50.000 0.00 0.00 0.00 2.67
6520 6825 1.003118 TCCAGCCTACACACACAATCC 59.997 52.381 0.00 0.00 0.00 3.01
6521 6826 1.003580 CCAGCCTACACACACAATCCT 59.996 52.381 0.00 0.00 0.00 3.24
6522 6827 2.553028 CCAGCCTACACACACAATCCTT 60.553 50.000 0.00 0.00 0.00 3.36
6523 6828 2.744202 CAGCCTACACACACAATCCTTC 59.256 50.000 0.00 0.00 0.00 3.46
6524 6829 2.084546 GCCTACACACACAATCCTTCC 58.915 52.381 0.00 0.00 0.00 3.46
6525 6830 2.290323 GCCTACACACACAATCCTTCCT 60.290 50.000 0.00 0.00 0.00 3.36
6526 6831 3.055385 GCCTACACACACAATCCTTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
6527 6832 4.564821 GCCTACACACACAATCCTTCCTAA 60.565 45.833 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.059161 TGTCCATGTTTCTCTCTTCTTGTG 58.941 41.667 0.00 0.00 0.00 3.33
12 13 5.296151 TGTCCATGTTTCTCTCTTCTTGT 57.704 39.130 0.00 0.00 0.00 3.16
13 14 5.528690 TGTTGTCCATGTTTCTCTCTTCTTG 59.471 40.000 0.00 0.00 0.00 3.02
16 17 5.059833 AGTGTTGTCCATGTTTCTCTCTTC 58.940 41.667 0.00 0.00 0.00 2.87
17 18 5.041191 AGTGTTGTCCATGTTTCTCTCTT 57.959 39.130 0.00 0.00 0.00 2.85
19 20 3.748568 GGAGTGTTGTCCATGTTTCTCTC 59.251 47.826 0.00 0.00 36.51 3.20
21 22 3.476552 TGGAGTGTTGTCCATGTTTCTC 58.523 45.455 0.00 0.00 41.99 2.87
23 24 3.380004 TGTTGGAGTGTTGTCCATGTTTC 59.620 43.478 0.00 0.00 46.31 2.78
30 33 1.092921 TGCGTGTTGGAGTGTTGTCC 61.093 55.000 0.00 0.00 37.10 4.02
34 37 0.814010 GAGGTGCGTGTTGGAGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
69 77 2.623416 GTGGTAGCTTCTTTGCTGGTTT 59.377 45.455 0.00 0.00 43.87 3.27
70 78 2.158608 AGTGGTAGCTTCTTTGCTGGTT 60.159 45.455 0.00 0.00 43.87 3.67
71 79 1.421646 AGTGGTAGCTTCTTTGCTGGT 59.578 47.619 0.00 0.00 43.87 4.00
72 80 2.191128 AGTGGTAGCTTCTTTGCTGG 57.809 50.000 0.00 0.00 43.87 4.85
73 81 3.058639 GTCAAGTGGTAGCTTCTTTGCTG 60.059 47.826 0.00 0.00 43.87 4.41
74 82 3.142174 GTCAAGTGGTAGCTTCTTTGCT 58.858 45.455 0.00 0.00 46.11 3.91
75 83 2.878406 TGTCAAGTGGTAGCTTCTTTGC 59.122 45.455 0.00 0.00 0.00 3.68
76 84 4.756642 TCATGTCAAGTGGTAGCTTCTTTG 59.243 41.667 0.00 0.00 0.00 2.77
77 85 4.973168 TCATGTCAAGTGGTAGCTTCTTT 58.027 39.130 0.00 0.00 0.00 2.52
78 86 4.040952 ACTCATGTCAAGTGGTAGCTTCTT 59.959 41.667 0.00 0.00 0.00 2.52
79 87 3.580458 ACTCATGTCAAGTGGTAGCTTCT 59.420 43.478 0.00 0.00 0.00 2.85
80 88 3.681897 CACTCATGTCAAGTGGTAGCTTC 59.318 47.826 0.00 0.00 40.36 3.86
81 89 3.324846 TCACTCATGTCAAGTGGTAGCTT 59.675 43.478 11.83 0.00 43.48 3.74
82 90 2.899900 TCACTCATGTCAAGTGGTAGCT 59.100 45.455 11.83 0.00 43.48 3.32
83 91 3.319137 TCACTCATGTCAAGTGGTAGC 57.681 47.619 11.83 0.00 43.48 3.58
84 92 5.077134 TCATCACTCATGTCAAGTGGTAG 57.923 43.478 11.83 4.42 43.48 3.18
85 93 4.621510 GCTCATCACTCATGTCAAGTGGTA 60.622 45.833 11.83 0.00 43.48 3.25
86 94 3.867600 GCTCATCACTCATGTCAAGTGGT 60.868 47.826 11.83 3.49 43.48 4.16
87 95 2.676839 GCTCATCACTCATGTCAAGTGG 59.323 50.000 11.83 0.00 43.48 4.00
88 96 3.597255 AGCTCATCACTCATGTCAAGTG 58.403 45.455 6.68 6.68 44.43 3.16
89 97 3.977134 AGCTCATCACTCATGTCAAGT 57.023 42.857 0.00 0.00 33.66 3.16
90 98 5.845103 AGATAGCTCATCACTCATGTCAAG 58.155 41.667 0.00 0.00 35.96 3.02
91 99 5.361857 TGAGATAGCTCATCACTCATGTCAA 59.638 40.000 6.59 0.00 45.88 3.18
92 100 4.891756 TGAGATAGCTCATCACTCATGTCA 59.108 41.667 6.59 0.00 45.88 3.58
93 101 5.450592 TGAGATAGCTCATCACTCATGTC 57.549 43.478 6.59 0.00 45.88 3.06
105 113 6.503524 TGGTTTGTTGTTTTTGAGATAGCTC 58.496 36.000 0.00 0.00 41.67 4.09
106 114 6.463995 TGGTTTGTTGTTTTTGAGATAGCT 57.536 33.333 0.00 0.00 0.00 3.32
107 115 5.175673 GCTGGTTTGTTGTTTTTGAGATAGC 59.824 40.000 0.00 0.00 0.00 2.97
108 116 6.272318 TGCTGGTTTGTTGTTTTTGAGATAG 58.728 36.000 0.00 0.00 0.00 2.08
109 117 6.214191 TGCTGGTTTGTTGTTTTTGAGATA 57.786 33.333 0.00 0.00 0.00 1.98
110 118 5.083533 TGCTGGTTTGTTGTTTTTGAGAT 57.916 34.783 0.00 0.00 0.00 2.75
111 119 4.527509 TGCTGGTTTGTTGTTTTTGAGA 57.472 36.364 0.00 0.00 0.00 3.27
112 120 5.407995 TCTTTGCTGGTTTGTTGTTTTTGAG 59.592 36.000 0.00 0.00 0.00 3.02
113 121 5.300752 TCTTTGCTGGTTTGTTGTTTTTGA 58.699 33.333 0.00 0.00 0.00 2.69
114 122 5.604010 TCTTTGCTGGTTTGTTGTTTTTG 57.396 34.783 0.00 0.00 0.00 2.44
115 123 5.334802 GCTTCTTTGCTGGTTTGTTGTTTTT 60.335 36.000 0.00 0.00 0.00 1.94
116 124 4.154015 GCTTCTTTGCTGGTTTGTTGTTTT 59.846 37.500 0.00 0.00 0.00 2.43
117 125 3.684305 GCTTCTTTGCTGGTTTGTTGTTT 59.316 39.130 0.00 0.00 0.00 2.83
118 126 3.055891 AGCTTCTTTGCTGGTTTGTTGTT 60.056 39.130 0.00 0.00 42.33 2.83
119 127 2.497273 AGCTTCTTTGCTGGTTTGTTGT 59.503 40.909 0.00 0.00 42.33 3.32
120 128 3.169355 AGCTTCTTTGCTGGTTTGTTG 57.831 42.857 0.00 0.00 42.33 3.33
149 157 3.688235 AGCGACTTACTTGAGACCTACT 58.312 45.455 0.00 0.00 0.00 2.57
198 206 2.888594 CCGACGGCAATTCTTCTTCTA 58.111 47.619 0.00 0.00 0.00 2.10
232 243 4.463879 CCTCTGGGCCGTGCTGAG 62.464 72.222 0.00 1.90 0.00 3.35
257 276 1.494960 GGCAGGAAGGAGACTGATCT 58.505 55.000 0.00 0.00 42.68 2.75
743 913 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
849 1019 2.032634 GCGAATCCAGTGACGCCAA 61.033 57.895 0.00 0.00 44.27 4.52
960 1158 1.836166 CTCCAGAGGAATCAGCCAAGA 59.164 52.381 0.00 0.00 0.00 3.02
992 1194 2.031919 ACTTGAACATGCCGGCGA 59.968 55.556 23.90 11.80 0.00 5.54
1056 1264 4.263572 TGGGTGGCGTGGAACTGG 62.264 66.667 0.00 0.00 31.75 4.00
1091 1299 3.452786 CTTCCTCCGGAGCGAGCA 61.453 66.667 26.87 9.61 31.21 4.26
1113 1321 5.692115 AACCAAGAACCAAGACCAAAAAT 57.308 34.783 0.00 0.00 0.00 1.82
1658 1894 3.306225 GCAGCAACCATCAAAATCAGGAA 60.306 43.478 0.00 0.00 0.00 3.36
1683 1919 0.537653 TCACCTGTCACACGGAACAA 59.462 50.000 0.75 0.00 0.00 2.83
1688 1924 0.670546 GATGGTCACCTGTCACACGG 60.671 60.000 0.00 0.00 0.00 4.94
1690 1926 0.396435 TGGATGGTCACCTGTCACAC 59.604 55.000 0.00 0.00 0.00 3.82
1844 2090 4.897509 AGTGAATCTGGTTGATGTGAGA 57.102 40.909 0.00 0.00 35.21 3.27
1845 2091 5.934043 TGTAAGTGAATCTGGTTGATGTGAG 59.066 40.000 0.00 0.00 35.21 3.51
1846 2092 5.700832 GTGTAAGTGAATCTGGTTGATGTGA 59.299 40.000 0.00 0.00 35.21 3.58
1847 2093 5.469760 TGTGTAAGTGAATCTGGTTGATGTG 59.530 40.000 0.00 0.00 35.21 3.21
1848 2094 5.620206 TGTGTAAGTGAATCTGGTTGATGT 58.380 37.500 0.00 0.00 35.21 3.06
1892 2139 2.631428 CGGTTGCAACGACACAGG 59.369 61.111 22.67 2.84 0.00 4.00
1897 2144 0.802494 ATGAATCCGGTTGCAACGAC 59.198 50.000 22.67 9.48 0.00 4.34
1899 2146 2.346099 AAATGAATCCGGTTGCAACG 57.654 45.000 22.67 17.02 0.00 4.10
1900 2147 3.442273 TCCTAAATGAATCCGGTTGCAAC 59.558 43.478 21.59 21.59 0.00 4.17
1901 2148 3.691575 TCCTAAATGAATCCGGTTGCAA 58.308 40.909 0.00 0.00 0.00 4.08
1902 2149 3.358111 TCCTAAATGAATCCGGTTGCA 57.642 42.857 0.00 0.00 0.00 4.08
1903 2150 3.181490 GGTTCCTAAATGAATCCGGTTGC 60.181 47.826 0.00 0.00 0.00 4.17
1904 2151 3.064820 CGGTTCCTAAATGAATCCGGTTG 59.935 47.826 0.00 0.00 36.33 3.77
1906 2153 2.420967 CCGGTTCCTAAATGAATCCGGT 60.421 50.000 17.77 0.00 44.71 5.28
1907 2154 2.218603 CCGGTTCCTAAATGAATCCGG 58.781 52.381 14.65 14.65 44.56 5.14
1908 2155 2.612212 CACCGGTTCCTAAATGAATCCG 59.388 50.000 2.97 0.00 38.00 4.18
1910 2157 2.357952 GGCACCGGTTCCTAAATGAATC 59.642 50.000 16.83 0.00 0.00 2.52
1911 2158 2.025321 AGGCACCGGTTCCTAAATGAAT 60.025 45.455 25.41 0.00 0.00 2.57
1913 2160 0.988832 AGGCACCGGTTCCTAAATGA 59.011 50.000 25.41 0.00 0.00 2.57
1915 2162 0.679960 GCAGGCACCGGTTCCTAAAT 60.680 55.000 26.08 0.38 0.00 1.40
1917 2164 2.221299 AGCAGGCACCGGTTCCTAA 61.221 57.895 26.08 0.00 0.00 2.69
1919 2166 4.335647 CAGCAGGCACCGGTTCCT 62.336 66.667 21.15 21.15 0.00 3.36
1934 2181 1.081242 GGCACACACCGAAATGCAG 60.081 57.895 0.00 0.00 39.92 4.41
2169 2416 0.252558 GGACTCCTCCCCACTAACCA 60.253 60.000 0.00 0.00 0.00 3.67
2171 2418 1.487300 GAGGACTCCTCCCCACTAAC 58.513 60.000 13.65 0.00 44.36 2.34
2182 2429 0.458260 GGAAAGCTCTCGAGGACTCC 59.542 60.000 13.56 8.22 0.00 3.85
2190 2437 3.198872 GACCAAATAGGGAAAGCTCTCG 58.801 50.000 0.00 0.00 43.89 4.04
2202 2449 5.777850 TGCAATGATGATGGACCAAATAG 57.222 39.130 0.00 0.00 0.00 1.73
2204 2451 5.364778 CAATGCAATGATGATGGACCAAAT 58.635 37.500 0.00 0.00 0.00 2.32
2209 2456 3.728076 AGCAATGCAATGATGATGGAC 57.272 42.857 8.35 0.00 0.00 4.02
2311 2558 3.134804 ACCCCCGAAATGATCAACTAGAG 59.865 47.826 0.00 0.00 0.00 2.43
2415 2663 5.050769 CGGAAAGATGACATAGTACATGCAC 60.051 44.000 0.00 0.00 0.00 4.57
2493 2741 0.251297 TCATCCCTGGTGGTTTGCTG 60.251 55.000 0.00 0.00 34.77 4.41
2706 2962 0.744414 ATGGGTTTCTCGATGTGGCG 60.744 55.000 0.00 0.00 0.00 5.69
2712 2968 2.503356 AGAGCTCAATGGGTTTCTCGAT 59.497 45.455 17.77 0.00 0.00 3.59
2916 3172 1.341679 TGCCCTCGCCTACTCTCTTTA 60.342 52.381 0.00 0.00 0.00 1.85
3012 3268 4.639334 CATCATGGATCGTCTTCCTCATT 58.361 43.478 0.00 0.00 36.68 2.57
3017 3273 2.245159 TGCATCATGGATCGTCTTCC 57.755 50.000 0.00 0.00 36.24 3.46
3213 3469 6.072230 TGGACATATCTCTATTCTTCTGCTCG 60.072 42.308 0.00 0.00 0.00 5.03
3399 3655 0.388134 GTTCAGAACTAGCGACGCCA 60.388 55.000 17.79 0.72 0.00 5.69
3403 3659 5.044428 TCTTGTAGTTCAGAACTAGCGAC 57.956 43.478 21.38 13.71 44.16 5.19
3552 3808 2.166254 CAGTTGTGTTTGTTCCAGCCTT 59.834 45.455 0.00 0.00 0.00 4.35
3615 3871 8.441311 TGGCCTCAAGATCACTTATTATAGAT 57.559 34.615 3.32 0.00 34.70 1.98
3717 3973 2.502295 CTCTGCTCTTGCTCAACCTTT 58.498 47.619 0.00 0.00 40.48 3.11
3823 4079 9.155975 GAAAGCAGAAGATACTTGTGAAGATAA 57.844 33.333 11.73 0.00 0.00 1.75
3891 4147 3.070159 TCTTCTGCAACTGTAGTTCTGCT 59.930 43.478 9.37 0.00 35.83 4.24
3927 4183 0.392998 CGTGGGCCTTCTGCAGTAAT 60.393 55.000 14.67 0.00 43.89 1.89
4023 4281 2.230025 CACCACCAGCCTATCTATCTCG 59.770 54.545 0.00 0.00 0.00 4.04
4612 4873 8.618677 CATATGAGAGAAAGCTAGCATGAAAAA 58.381 33.333 18.83 0.00 0.00 1.94
4791 5065 0.803117 CTGTCCAGCATGCTGACTTG 59.197 55.000 42.21 27.65 46.30 3.16
4982 5259 0.813821 GGACCTCCATTCAAAGCTGC 59.186 55.000 0.00 0.00 35.64 5.25
5013 5290 6.654161 AGCTCCAAGCACTGAAATATCATATC 59.346 38.462 1.29 0.00 45.56 1.63
5031 5308 0.398381 AAAAGGCCCAACAGCTCCAA 60.398 50.000 0.00 0.00 0.00 3.53
5036 5313 1.134995 GCTATGAAAAGGCCCAACAGC 60.135 52.381 0.00 0.00 0.00 4.40
5256 5536 6.469410 TGGATTTAAAGCTAAGAAGACCGAA 58.531 36.000 3.10 0.00 0.00 4.30
5276 5556 9.896645 CATTTGCTCCTATATGTATAACTGGAT 57.103 33.333 0.00 0.00 0.00 3.41
5299 5582 4.020751 ACAGCAGAGTATGTCAGTCACATT 60.021 41.667 0.00 0.00 43.89 2.71
5301 5584 2.893489 ACAGCAGAGTATGTCAGTCACA 59.107 45.455 0.00 0.00 40.18 3.58
5316 5599 2.975851 GCGAGAAAATCAACAACAGCAG 59.024 45.455 0.00 0.00 0.00 4.24
5322 5605 1.952990 TGGCAGCGAGAAAATCAACAA 59.047 42.857 0.00 0.00 0.00 2.83
5856 6146 9.466497 AAACATCAGGAGAATTATACAACACAT 57.534 29.630 0.00 0.00 0.00 3.21
5948 6243 5.990408 AGTTCAAATCGTTAGTTGCTTCAG 58.010 37.500 0.00 0.00 30.81 3.02
5959 6254 2.223377 GCGAGTCCAAGTTCAAATCGTT 59.777 45.455 5.95 0.00 0.00 3.85
6016 6311 3.004862 GGGTGATACGAAATTTCCGTGT 58.995 45.455 19.24 14.99 40.76 4.49
6139 6435 2.437897 CAAGGAAGCAGGGCCTGT 59.562 61.111 32.80 16.12 34.00 4.00
6181 6486 2.710902 CCGTGGTGATCTGCCGAGA 61.711 63.158 0.00 0.00 0.00 4.04
6275 6580 8.204836 GGCATATGTCCTAGTTCTCTCTTTAAA 58.795 37.037 4.29 0.00 0.00 1.52
6278 6583 5.071115 GGGCATATGTCCTAGTTCTCTCTTT 59.929 44.000 19.49 0.00 36.72 2.52
6279 6584 4.591072 GGGCATATGTCCTAGTTCTCTCTT 59.409 45.833 19.49 0.00 36.72 2.85
6280 6585 4.156477 GGGCATATGTCCTAGTTCTCTCT 58.844 47.826 19.49 0.00 36.72 3.10
6281 6586 3.057174 CGGGCATATGTCCTAGTTCTCTC 60.057 52.174 23.58 0.00 37.76 3.20
6282 6587 2.894126 CGGGCATATGTCCTAGTTCTCT 59.106 50.000 23.58 0.00 37.76 3.10
6283 6588 2.628657 ACGGGCATATGTCCTAGTTCTC 59.371 50.000 23.58 0.00 37.76 2.87
6284 6589 2.679082 ACGGGCATATGTCCTAGTTCT 58.321 47.619 23.58 0.00 37.76 3.01
6285 6590 3.391049 GAACGGGCATATGTCCTAGTTC 58.609 50.000 23.00 23.00 37.76 3.01
6286 6591 2.223971 CGAACGGGCATATGTCCTAGTT 60.224 50.000 23.58 19.80 37.76 2.24
6287 6592 1.340248 CGAACGGGCATATGTCCTAGT 59.660 52.381 23.58 12.53 37.76 2.57
6288 6593 1.340248 ACGAACGGGCATATGTCCTAG 59.660 52.381 23.58 11.87 37.76 3.02
6289 6594 1.405872 ACGAACGGGCATATGTCCTA 58.594 50.000 23.58 0.00 37.76 2.94
6290 6595 0.539986 AACGAACGGGCATATGTCCT 59.460 50.000 23.58 6.28 37.76 3.85
6291 6596 0.655733 CAACGAACGGGCATATGTCC 59.344 55.000 16.86 16.86 36.18 4.02
6292 6597 0.027586 GCAACGAACGGGCATATGTC 59.972 55.000 4.29 0.58 0.00 3.06
6293 6598 0.675208 TGCAACGAACGGGCATATGT 60.675 50.000 4.29 0.00 31.58 2.29
6294 6599 0.449786 TTGCAACGAACGGGCATATG 59.550 50.000 14.09 0.00 37.39 1.78
6295 6600 1.065401 CATTGCAACGAACGGGCATAT 59.935 47.619 0.00 9.31 37.39 1.78
6296 6601 0.449786 CATTGCAACGAACGGGCATA 59.550 50.000 0.00 7.91 37.39 3.14
6297 6602 1.212490 CATTGCAACGAACGGGCAT 59.788 52.632 0.00 5.13 37.39 4.40
6298 6603 2.642129 CATTGCAACGAACGGGCA 59.358 55.556 0.00 10.58 35.41 5.36
6299 6604 2.126502 CCATTGCAACGAACGGGC 60.127 61.111 0.00 2.96 0.00 6.13
6300 6605 1.519751 TTCCCATTGCAACGAACGGG 61.520 55.000 0.00 7.33 34.81 5.28
6301 6606 0.312416 TTTCCCATTGCAACGAACGG 59.688 50.000 0.00 0.00 0.00 4.44
6302 6607 2.126914 TTTTCCCATTGCAACGAACG 57.873 45.000 0.00 0.00 0.00 3.95
6303 6608 6.532365 TTTATTTTTCCCATTGCAACGAAC 57.468 33.333 0.00 0.00 0.00 3.95
6304 6609 7.308229 CCAATTTATTTTTCCCATTGCAACGAA 60.308 33.333 0.00 0.88 0.00 3.85
6305 6610 6.148480 CCAATTTATTTTTCCCATTGCAACGA 59.852 34.615 0.00 0.00 0.00 3.85
6306 6611 6.313252 CCAATTTATTTTTCCCATTGCAACG 58.687 36.000 0.00 0.00 0.00 4.10
6307 6612 6.072008 AGCCAATTTATTTTTCCCATTGCAAC 60.072 34.615 0.00 0.00 0.00 4.17
6308 6613 6.008960 AGCCAATTTATTTTTCCCATTGCAA 58.991 32.000 0.00 0.00 0.00 4.08
6309 6614 5.568392 AGCCAATTTATTTTTCCCATTGCA 58.432 33.333 0.00 0.00 0.00 4.08
6310 6615 6.238456 GCTAGCCAATTTATTTTTCCCATTGC 60.238 38.462 2.29 0.00 0.00 3.56
6311 6616 6.822676 TGCTAGCCAATTTATTTTTCCCATTG 59.177 34.615 13.29 0.00 0.00 2.82
6312 6617 6.956497 TGCTAGCCAATTTATTTTTCCCATT 58.044 32.000 13.29 0.00 0.00 3.16
6313 6618 6.558488 TGCTAGCCAATTTATTTTTCCCAT 57.442 33.333 13.29 0.00 0.00 4.00
6314 6619 6.558488 ATGCTAGCCAATTTATTTTTCCCA 57.442 33.333 13.29 0.00 0.00 4.37
6315 6620 8.992073 CATAATGCTAGCCAATTTATTTTTCCC 58.008 33.333 13.29 0.00 0.00 3.97
6316 6621 9.762933 TCATAATGCTAGCCAATTTATTTTTCC 57.237 29.630 13.29 0.00 0.00 3.13
6323 6628 9.081204 ACATTGATCATAATGCTAGCCAATTTA 57.919 29.630 13.29 5.70 40.80 1.40
6324 6629 7.959175 ACATTGATCATAATGCTAGCCAATTT 58.041 30.769 13.29 2.37 40.80 1.82
6325 6630 7.534723 ACATTGATCATAATGCTAGCCAATT 57.465 32.000 13.29 8.87 40.80 2.32
6326 6631 6.128090 CGACATTGATCATAATGCTAGCCAAT 60.128 38.462 13.29 8.86 40.80 3.16
6327 6632 5.179929 CGACATTGATCATAATGCTAGCCAA 59.820 40.000 13.29 6.75 40.80 4.52
6328 6633 4.692155 CGACATTGATCATAATGCTAGCCA 59.308 41.667 13.29 0.24 40.80 4.75
6329 6634 4.436584 GCGACATTGATCATAATGCTAGCC 60.437 45.833 13.29 0.00 40.80 3.93
6330 6635 4.391216 AGCGACATTGATCATAATGCTAGC 59.609 41.667 8.10 8.10 40.80 3.42
6331 6636 6.587608 TGTAGCGACATTGATCATAATGCTAG 59.412 38.462 13.93 5.65 40.80 3.42
6332 6637 6.366061 GTGTAGCGACATTGATCATAATGCTA 59.634 38.462 2.07 9.36 40.80 3.49
6333 6638 5.178252 GTGTAGCGACATTGATCATAATGCT 59.822 40.000 2.07 10.19 40.80 3.79
6334 6639 5.377358 GTGTAGCGACATTGATCATAATGC 58.623 41.667 2.07 3.85 40.80 3.56
6335 6640 5.466393 TGGTGTAGCGACATTGATCATAATG 59.534 40.000 2.07 0.43 42.38 1.90
6336 6641 5.610398 TGGTGTAGCGACATTGATCATAAT 58.390 37.500 2.07 0.00 38.04 1.28
6337 6642 5.017294 TGGTGTAGCGACATTGATCATAA 57.983 39.130 2.07 0.00 38.04 1.90
6338 6643 4.664150 TGGTGTAGCGACATTGATCATA 57.336 40.909 2.07 0.00 38.04 2.15
6339 6644 3.541996 TGGTGTAGCGACATTGATCAT 57.458 42.857 2.07 0.00 38.04 2.45
6340 6645 3.326836 TTGGTGTAGCGACATTGATCA 57.673 42.857 2.07 0.00 38.04 2.92
6341 6646 4.678509 TTTTGGTGTAGCGACATTGATC 57.321 40.909 2.07 0.00 38.04 2.92
6342 6647 4.675146 GCATTTTGGTGTAGCGACATTGAT 60.675 41.667 2.07 0.00 38.04 2.57
6343 6648 3.365868 GCATTTTGGTGTAGCGACATTGA 60.366 43.478 2.07 0.00 38.04 2.57
6344 6649 2.916716 GCATTTTGGTGTAGCGACATTG 59.083 45.455 2.07 0.00 38.04 2.82
6345 6650 2.094752 GGCATTTTGGTGTAGCGACATT 60.095 45.455 2.07 0.00 38.04 2.71
6346 6651 1.472480 GGCATTTTGGTGTAGCGACAT 59.528 47.619 2.07 0.00 38.04 3.06
6347 6652 0.878416 GGCATTTTGGTGTAGCGACA 59.122 50.000 0.00 0.00 0.00 4.35
6348 6653 1.165270 AGGCATTTTGGTGTAGCGAC 58.835 50.000 0.00 0.00 0.00 5.19
6349 6654 2.352388 GTAGGCATTTTGGTGTAGCGA 58.648 47.619 0.00 0.00 0.00 4.93
6350 6655 1.400494 GGTAGGCATTTTGGTGTAGCG 59.600 52.381 0.00 0.00 0.00 4.26
6351 6656 2.423538 CTGGTAGGCATTTTGGTGTAGC 59.576 50.000 0.00 0.00 0.00 3.58
6352 6657 3.686016 ACTGGTAGGCATTTTGGTGTAG 58.314 45.455 0.00 0.00 0.00 2.74
6353 6658 3.799432 ACTGGTAGGCATTTTGGTGTA 57.201 42.857 0.00 0.00 0.00 2.90
6354 6659 2.675658 ACTGGTAGGCATTTTGGTGT 57.324 45.000 0.00 0.00 0.00 4.16
6355 6660 3.823873 TGTTACTGGTAGGCATTTTGGTG 59.176 43.478 0.00 0.00 0.00 4.17
6356 6661 3.824443 GTGTTACTGGTAGGCATTTTGGT 59.176 43.478 0.00 0.00 0.00 3.67
6357 6662 3.119990 CGTGTTACTGGTAGGCATTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
6358 6663 3.749088 TCGTGTTACTGGTAGGCATTTTG 59.251 43.478 0.00 0.00 0.00 2.44
6359 6664 3.749609 GTCGTGTTACTGGTAGGCATTTT 59.250 43.478 0.00 0.00 0.00 1.82
6360 6665 3.244284 TGTCGTGTTACTGGTAGGCATTT 60.244 43.478 0.00 0.00 0.00 2.32
6361 6666 2.300723 TGTCGTGTTACTGGTAGGCATT 59.699 45.455 0.00 0.00 0.00 3.56
6362 6667 1.897133 TGTCGTGTTACTGGTAGGCAT 59.103 47.619 0.00 0.00 0.00 4.40
6363 6668 1.330234 TGTCGTGTTACTGGTAGGCA 58.670 50.000 0.00 0.00 0.00 4.75
6364 6669 2.667473 ATGTCGTGTTACTGGTAGGC 57.333 50.000 0.00 0.00 0.00 3.93
6365 6670 3.119743 TCGAATGTCGTGTTACTGGTAGG 60.120 47.826 0.00 0.00 41.35 3.18
6366 6671 4.087510 TCGAATGTCGTGTTACTGGTAG 57.912 45.455 0.00 0.00 41.35 3.18
6367 6672 4.229096 GTTCGAATGTCGTGTTACTGGTA 58.771 43.478 0.00 0.00 41.35 3.25
6368 6673 3.054878 GTTCGAATGTCGTGTTACTGGT 58.945 45.455 0.00 0.00 41.35 4.00
6369 6674 3.054166 TGTTCGAATGTCGTGTTACTGG 58.946 45.455 0.00 0.00 41.35 4.00
6370 6675 3.734231 AGTGTTCGAATGTCGTGTTACTG 59.266 43.478 0.00 0.00 41.35 2.74
6371 6676 3.734231 CAGTGTTCGAATGTCGTGTTACT 59.266 43.478 0.00 0.00 41.35 2.24
6372 6677 3.732219 TCAGTGTTCGAATGTCGTGTTAC 59.268 43.478 0.00 0.00 41.35 2.50
6373 6678 3.732219 GTCAGTGTTCGAATGTCGTGTTA 59.268 43.478 0.00 0.00 41.35 2.41
6374 6679 2.538449 GTCAGTGTTCGAATGTCGTGTT 59.462 45.455 0.00 0.00 41.35 3.32
6375 6680 2.124903 GTCAGTGTTCGAATGTCGTGT 58.875 47.619 0.00 0.00 41.35 4.49
6376 6681 2.124122 TGTCAGTGTTCGAATGTCGTG 58.876 47.619 0.00 0.00 41.35 4.35
6377 6682 2.394708 CTGTCAGTGTTCGAATGTCGT 58.605 47.619 0.00 0.00 41.35 4.34
6378 6683 1.721389 CCTGTCAGTGTTCGAATGTCG 59.279 52.381 0.00 0.00 42.10 4.35
6379 6684 1.461127 GCCTGTCAGTGTTCGAATGTC 59.539 52.381 0.00 0.00 0.00 3.06
6380 6685 1.512926 GCCTGTCAGTGTTCGAATGT 58.487 50.000 0.00 0.00 0.00 2.71
6381 6686 0.439985 CGCCTGTCAGTGTTCGAATG 59.560 55.000 0.00 0.00 0.00 2.67
6382 6687 0.670546 CCGCCTGTCAGTGTTCGAAT 60.671 55.000 0.00 0.00 0.00 3.34
6383 6688 1.300620 CCGCCTGTCAGTGTTCGAA 60.301 57.895 0.00 0.00 0.00 3.71
6384 6689 2.338620 CCGCCTGTCAGTGTTCGA 59.661 61.111 0.00 0.00 0.00 3.71
6385 6690 3.414700 GCCGCCTGTCAGTGTTCG 61.415 66.667 0.00 0.00 0.00 3.95
6386 6691 2.280797 TGCCGCCTGTCAGTGTTC 60.281 61.111 0.00 0.00 0.00 3.18
6387 6692 2.281070 CTGCCGCCTGTCAGTGTT 60.281 61.111 0.00 0.00 0.00 3.32
6388 6693 3.231889 CTCTGCCGCCTGTCAGTGT 62.232 63.158 0.00 0.00 0.00 3.55
6389 6694 2.433838 CTCTGCCGCCTGTCAGTG 60.434 66.667 0.00 0.00 0.00 3.66
6390 6695 2.601666 TCTCTGCCGCCTGTCAGT 60.602 61.111 0.00 0.00 0.00 3.41
6391 6696 2.183811 CTCTCTGCCGCCTGTCAG 59.816 66.667 0.00 0.00 0.00 3.51
6392 6697 2.601666 ACTCTCTGCCGCCTGTCA 60.602 61.111 0.00 0.00 0.00 3.58
6393 6698 2.183046 GACTCTCTGCCGCCTGTC 59.817 66.667 0.00 0.00 0.00 3.51
6394 6699 3.753434 CGACTCTCTGCCGCCTGT 61.753 66.667 0.00 0.00 0.00 4.00
6401 6706 1.160137 AAACATTGGCGACTCTCTGC 58.840 50.000 0.00 0.00 0.00 4.26
6402 6707 3.849911 TCTAAACATTGGCGACTCTCTG 58.150 45.455 0.00 0.00 0.00 3.35
6403 6708 4.537135 TTCTAAACATTGGCGACTCTCT 57.463 40.909 0.00 0.00 0.00 3.10
6404 6709 4.929808 TCTTTCTAAACATTGGCGACTCTC 59.070 41.667 0.00 0.00 0.00 3.20
6405 6710 4.894784 TCTTTCTAAACATTGGCGACTCT 58.105 39.130 0.00 0.00 0.00 3.24
6406 6711 5.607119 TTCTTTCTAAACATTGGCGACTC 57.393 39.130 0.00 0.00 0.00 3.36
6407 6712 6.385649 TTTTCTTTCTAAACATTGGCGACT 57.614 33.333 0.00 0.00 0.00 4.18
6408 6713 6.143919 CCTTTTTCTTTCTAAACATTGGCGAC 59.856 38.462 0.00 0.00 0.00 5.19
6409 6714 6.183360 ACCTTTTTCTTTCTAAACATTGGCGA 60.183 34.615 0.00 0.00 0.00 5.54
6410 6715 5.983118 ACCTTTTTCTTTCTAAACATTGGCG 59.017 36.000 0.00 0.00 0.00 5.69
6411 6716 8.880878 TTACCTTTTTCTTTCTAAACATTGGC 57.119 30.769 0.00 0.00 0.00 4.52
6427 6732 6.841611 TCGTGTGCGGAGGATTACCTTTTT 62.842 45.833 0.00 0.00 40.98 1.94
6428 6733 5.433710 TCGTGTGCGGAGGATTACCTTTT 62.434 47.826 0.00 0.00 40.98 2.27
6429 6734 3.989228 TCGTGTGCGGAGGATTACCTTT 61.989 50.000 0.00 0.00 40.98 3.11
6430 6735 2.503014 TCGTGTGCGGAGGATTACCTT 61.503 52.381 0.00 0.00 40.98 3.50
6431 6736 0.968901 TCGTGTGCGGAGGATTACCT 60.969 55.000 0.00 0.00 42.51 3.08
6432 6737 0.804933 GTCGTGTGCGGAGGATTACC 60.805 60.000 0.00 0.00 38.89 2.85
6433 6738 0.108992 TGTCGTGTGCGGAGGATTAC 60.109 55.000 0.00 0.00 38.89 1.89
6434 6739 0.821517 ATGTCGTGTGCGGAGGATTA 59.178 50.000 0.00 0.00 38.89 1.75
6435 6740 0.460284 GATGTCGTGTGCGGAGGATT 60.460 55.000 0.00 0.00 38.89 3.01
6436 6741 1.141881 GATGTCGTGTGCGGAGGAT 59.858 57.895 0.00 0.00 38.89 3.24
6437 6742 2.571757 GATGTCGTGTGCGGAGGA 59.428 61.111 0.00 0.00 38.89 3.71
6438 6743 2.880879 CGATGTCGTGTGCGGAGG 60.881 66.667 0.00 0.00 38.89 4.30
6439 6744 2.152699 GTCGATGTCGTGTGCGGAG 61.153 63.158 2.04 0.00 40.80 4.63
6440 6745 2.126618 GTCGATGTCGTGTGCGGA 60.127 61.111 2.04 0.00 40.80 5.54
6441 6746 2.430075 TGTCGATGTCGTGTGCGG 60.430 61.111 2.04 0.00 40.80 5.69
6442 6747 2.014018 TGTGTCGATGTCGTGTGCG 61.014 57.895 2.04 0.00 40.80 5.34
6443 6748 1.212455 TGTGTGTCGATGTCGTGTGC 61.212 55.000 2.04 0.00 40.80 4.57
6444 6749 1.071502 GTTGTGTGTCGATGTCGTGTG 60.072 52.381 2.04 0.00 40.80 3.82
6445 6750 1.205657 GTTGTGTGTCGATGTCGTGT 58.794 50.000 2.04 0.00 40.80 4.49
6446 6751 0.506932 GGTTGTGTGTCGATGTCGTG 59.493 55.000 2.04 0.00 40.80 4.35
6447 6752 0.103390 TGGTTGTGTGTCGATGTCGT 59.897 50.000 2.04 0.00 40.80 4.34
6448 6753 0.506932 GTGGTTGTGTGTCGATGTCG 59.493 55.000 0.00 0.00 41.45 4.35
6449 6754 1.260561 GTGTGGTTGTGTGTCGATGTC 59.739 52.381 0.00 0.00 0.00 3.06
6450 6755 1.295792 GTGTGGTTGTGTGTCGATGT 58.704 50.000 0.00 0.00 0.00 3.06
6451 6756 1.003972 GTGTGTGGTTGTGTGTCGATG 60.004 52.381 0.00 0.00 0.00 3.84
6452 6757 1.295792 GTGTGTGGTTGTGTGTCGAT 58.704 50.000 0.00 0.00 0.00 3.59
6453 6758 1.079317 CGTGTGTGGTTGTGTGTCGA 61.079 55.000 0.00 0.00 0.00 4.20
6454 6759 1.346879 CGTGTGTGGTTGTGTGTCG 59.653 57.895 0.00 0.00 0.00 4.35
6455 6760 0.372334 GACGTGTGTGGTTGTGTGTC 59.628 55.000 0.00 0.00 0.00 3.67
6456 6761 1.022451 GGACGTGTGTGGTTGTGTGT 61.022 55.000 0.00 0.00 0.00 3.72
6457 6762 1.021920 TGGACGTGTGTGGTTGTGTG 61.022 55.000 0.00 0.00 0.00 3.82
6458 6763 0.107410 ATGGACGTGTGTGGTTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
6459 6764 0.307453 CATGGACGTGTGTGGTTGTG 59.693 55.000 0.00 0.00 0.00 3.33
6460 6765 0.107410 ACATGGACGTGTGTGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
6461 6766 1.021202 AACATGGACGTGTGTGGTTG 58.979 50.000 0.00 0.00 31.49 3.77
6462 6767 1.673920 GAAACATGGACGTGTGTGGTT 59.326 47.619 0.00 0.00 31.49 3.67
6463 6768 1.305201 GAAACATGGACGTGTGTGGT 58.695 50.000 0.00 0.00 31.49 4.16
6464 6769 0.591170 GGAAACATGGACGTGTGTGG 59.409 55.000 0.00 0.00 31.49 4.17
6465 6770 1.593196 AGGAAACATGGACGTGTGTG 58.407 50.000 0.00 0.00 31.49 3.82
6466 6771 2.218603 GAAGGAAACATGGACGTGTGT 58.781 47.619 0.00 0.00 31.49 3.72
6467 6772 1.535462 GGAAGGAAACATGGACGTGTG 59.465 52.381 0.00 0.00 31.49 3.82
6468 6773 1.420138 AGGAAGGAAACATGGACGTGT 59.580 47.619 0.00 0.00 0.00 4.49
6469 6774 2.185004 AGGAAGGAAACATGGACGTG 57.815 50.000 0.00 0.00 0.00 4.49
6470 6775 2.504367 CAAGGAAGGAAACATGGACGT 58.496 47.619 0.00 0.00 0.00 4.34
6471 6776 1.200020 GCAAGGAAGGAAACATGGACG 59.800 52.381 0.00 0.00 0.00 4.79
6472 6777 2.238521 TGCAAGGAAGGAAACATGGAC 58.761 47.619 0.00 0.00 0.00 4.02
6473 6778 2.673775 TGCAAGGAAGGAAACATGGA 57.326 45.000 0.00 0.00 0.00 3.41
6474 6779 2.564062 ACATGCAAGGAAGGAAACATGG 59.436 45.455 0.00 0.00 39.30 3.66
6475 6780 3.947910 ACATGCAAGGAAGGAAACATG 57.052 42.857 0.00 0.00 40.48 3.21
6476 6781 3.259123 GGAACATGCAAGGAAGGAAACAT 59.741 43.478 0.00 0.00 0.00 2.71
6477 6782 2.627699 GGAACATGCAAGGAAGGAAACA 59.372 45.455 0.00 0.00 0.00 2.83
6478 6783 2.893489 AGGAACATGCAAGGAAGGAAAC 59.107 45.455 0.00 0.00 0.00 2.78
6479 6784 3.243359 AGGAACATGCAAGGAAGGAAA 57.757 42.857 0.00 0.00 0.00 3.13
6480 6785 2.978156 AGGAACATGCAAGGAAGGAA 57.022 45.000 0.00 0.00 0.00 3.36
6481 6786 2.555227 GGAAGGAACATGCAAGGAAGGA 60.555 50.000 0.00 0.00 0.00 3.36
6482 6787 1.821136 GGAAGGAACATGCAAGGAAGG 59.179 52.381 0.00 0.00 0.00 3.46
6483 6788 2.490903 CTGGAAGGAACATGCAAGGAAG 59.509 50.000 0.00 0.00 0.00 3.46
6484 6789 2.517959 CTGGAAGGAACATGCAAGGAA 58.482 47.619 0.00 0.00 0.00 3.36
6485 6790 1.887956 GCTGGAAGGAACATGCAAGGA 60.888 52.381 0.00 0.00 0.00 3.36
6486 6791 0.529378 GCTGGAAGGAACATGCAAGG 59.471 55.000 0.00 0.00 0.00 3.61
6487 6792 0.529378 GGCTGGAAGGAACATGCAAG 59.471 55.000 0.00 0.00 0.00 4.01
6488 6793 0.112995 AGGCTGGAAGGAACATGCAA 59.887 50.000 0.00 0.00 0.00 4.08
6489 6794 0.991146 TAGGCTGGAAGGAACATGCA 59.009 50.000 0.00 0.00 0.00 3.96
6490 6795 1.340017 TGTAGGCTGGAAGGAACATGC 60.340 52.381 0.00 0.00 0.00 4.06
6491 6796 2.290260 TGTGTAGGCTGGAAGGAACATG 60.290 50.000 0.00 0.00 0.00 3.21
6492 6797 1.985159 TGTGTAGGCTGGAAGGAACAT 59.015 47.619 0.00 0.00 0.00 2.71
6493 6798 1.071699 GTGTGTAGGCTGGAAGGAACA 59.928 52.381 0.00 0.00 0.00 3.18
6494 6799 1.071699 TGTGTGTAGGCTGGAAGGAAC 59.928 52.381 0.00 0.00 0.00 3.62
6495 6800 1.071699 GTGTGTGTAGGCTGGAAGGAA 59.928 52.381 0.00 0.00 0.00 3.36
6496 6801 0.685097 GTGTGTGTAGGCTGGAAGGA 59.315 55.000 0.00 0.00 0.00 3.36
6497 6802 0.396435 TGTGTGTGTAGGCTGGAAGG 59.604 55.000 0.00 0.00 0.00 3.46
6498 6803 2.254546 TTGTGTGTGTAGGCTGGAAG 57.745 50.000 0.00 0.00 0.00 3.46
6499 6804 2.552155 GGATTGTGTGTGTAGGCTGGAA 60.552 50.000 0.00 0.00 0.00 3.53
6500 6805 1.003118 GGATTGTGTGTGTAGGCTGGA 59.997 52.381 0.00 0.00 0.00 3.86
6501 6806 1.003580 AGGATTGTGTGTGTAGGCTGG 59.996 52.381 0.00 0.00 0.00 4.85
6502 6807 2.479566 AGGATTGTGTGTGTAGGCTG 57.520 50.000 0.00 0.00 0.00 4.85
6503 6808 2.290323 GGAAGGATTGTGTGTGTAGGCT 60.290 50.000 0.00 0.00 0.00 4.58
6504 6809 2.084546 GGAAGGATTGTGTGTGTAGGC 58.915 52.381 0.00 0.00 0.00 3.93
6505 6810 3.703001 AGGAAGGATTGTGTGTGTAGG 57.297 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.