Multiple sequence alignment - TraesCS1D01G163000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G163000 chr1D 100.000 2461 0 0 1 2461 233798234 233800694 0.000000e+00 4545.0
1 TraesCS1D01G163000 chr1D 77.657 367 74 7 2084 2444 279245841 279246205 1.480000e-52 217.0
2 TraesCS1D01G163000 chr1D 87.324 71 2 4 1711 1774 459891717 459891787 9.440000e-10 75.0
3 TraesCS1D01G163000 chr1B 92.358 1819 77 23 675 2460 368420807 368422596 0.000000e+00 2532.0
4 TraesCS1D01G163000 chr1B 84.843 541 41 29 49 565 368416839 368417362 7.850000e-140 507.0
5 TraesCS1D01G163000 chr1B 76.487 353 69 12 2100 2444 379375312 379375658 1.940000e-41 180.0
6 TraesCS1D01G163000 chr1B 91.071 56 4 1 1 56 368414733 368414787 9.440000e-10 75.0
7 TraesCS1D01G163000 chr1A 91.811 867 48 11 826 1684 313900525 313899674 0.000000e+00 1186.0
8 TraesCS1D01G163000 chr1A 86.406 640 71 10 1832 2457 313899671 313899034 0.000000e+00 686.0
9 TraesCS1D01G163000 chr1A 88.201 517 31 12 1 503 313902340 313901840 7.580000e-165 590.0
10 TraesCS1D01G163000 chr1A 78.058 278 53 7 2172 2444 351602051 351602325 4.210000e-38 169.0
11 TraesCS1D01G163000 chr1A 93.939 99 3 2 655 751 313901271 313901174 1.970000e-31 147.0
12 TraesCS1D01G163000 chr1A 94.318 88 4 1 574 660 313901387 313901300 1.540000e-27 134.0
13 TraesCS1D01G163000 chr1A 97.727 44 1 0 525 568 313901493 313901450 2.620000e-10 76.8
14 TraesCS1D01G163000 chr6A 78.521 284 59 2 2175 2457 614439321 614439039 4.180000e-43 185.0
15 TraesCS1D01G163000 chr2D 98.148 54 1 0 1778 1831 468979847 468979900 7.250000e-16 95.3
16 TraesCS1D01G163000 chr2B 96.296 54 2 0 1778 1831 547438674 547438727 3.370000e-14 89.8
17 TraesCS1D01G163000 chr2A 96.296 54 2 0 1778 1831 703678090 703678143 3.370000e-14 89.8
18 TraesCS1D01G163000 chr2A 96.296 54 1 1 1778 1831 608910168 608910220 1.210000e-13 87.9
19 TraesCS1D01G163000 chr4A 86.842 76 3 4 1711 1780 644033511 644033437 7.300000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G163000 chr1D 233798234 233800694 2460 False 4545.000000 4545 100.000 1 2461 1 chr1D.!!$F1 2460
1 TraesCS1D01G163000 chr1B 368414733 368422596 7863 False 1038.000000 2532 89.424 1 2460 3 chr1B.!!$F2 2459
2 TraesCS1D01G163000 chr1A 313899034 313902340 3306 True 469.966667 1186 92.067 1 2457 6 chr1A.!!$R1 2456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 6571 0.030603 GATCCCAACCTCCTCCTCCT 60.031 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 8770 0.533531 CATCGCTAGAAGCATGGCCA 60.534 55.0 8.56 8.56 42.58 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.612351 AGTGGAACCTGTAGAGAGAAAAAC 58.388 41.667 0.00 0.00 37.80 2.43
107 2166 0.031994 AAATCCAAGCACAACCACGC 59.968 50.000 0.00 0.00 0.00 5.34
110 2169 4.249020 CAAGCACAACCACGCGCA 62.249 61.111 5.73 0.00 0.00 6.09
116 2175 3.276091 CAACCACGCGCAACAGGA 61.276 61.111 5.73 0.00 0.00 3.86
117 2176 2.972505 AACCACGCGCAACAGGAG 60.973 61.111 5.73 0.00 0.00 3.69
118 2177 3.454587 AACCACGCGCAACAGGAGA 62.455 57.895 5.73 0.00 0.00 3.71
119 2178 2.434884 CCACGCGCAACAGGAGAT 60.435 61.111 5.73 0.00 0.00 2.75
143 2207 1.514228 CGCACACTCGCTCGTGTAT 60.514 57.895 7.44 0.00 45.74 2.29
149 2213 0.247974 ACTCGCTCGTGTATGTACGC 60.248 55.000 0.00 0.00 43.40 4.42
225 2306 4.379374 AAATGTTTGCACGTACGTAGAC 57.621 40.909 22.34 16.32 0.00 2.59
237 2318 4.177026 CGTACGTAGACACTGTAGGTAGT 58.823 47.826 7.22 0.00 0.00 2.73
238 2319 5.105877 ACGTACGTAGACACTGTAGGTAGTA 60.106 44.000 21.41 0.00 34.33 1.82
239 2320 5.457148 CGTACGTAGACACTGTAGGTAGTAG 59.543 48.000 7.22 0.00 0.00 2.57
288 2369 2.128035 CGCGTATTCTGACTGGGAATC 58.872 52.381 0.00 0.00 35.40 2.52
292 2373 2.698855 ATTCTGACTGGGAATCGTGG 57.301 50.000 0.00 0.00 0.00 4.94
293 2374 1.348064 TTCTGACTGGGAATCGTGGT 58.652 50.000 0.00 0.00 0.00 4.16
294 2375 2.225382 TCTGACTGGGAATCGTGGTA 57.775 50.000 0.00 0.00 0.00 3.25
295 2376 2.100197 TCTGACTGGGAATCGTGGTAG 58.900 52.381 0.00 0.00 0.00 3.18
296 2377 1.825474 CTGACTGGGAATCGTGGTAGT 59.175 52.381 0.00 0.00 0.00 2.73
297 2378 3.021695 CTGACTGGGAATCGTGGTAGTA 58.978 50.000 0.00 0.00 0.00 1.82
298 2379 3.021695 TGACTGGGAATCGTGGTAGTAG 58.978 50.000 0.00 0.00 0.00 2.57
299 2380 3.022406 GACTGGGAATCGTGGTAGTAGT 58.978 50.000 0.00 0.00 0.00 2.73
300 2381 4.202441 GACTGGGAATCGTGGTAGTAGTA 58.798 47.826 0.00 0.00 0.00 1.82
301 2382 4.205587 ACTGGGAATCGTGGTAGTAGTAG 58.794 47.826 0.00 0.00 0.00 2.57
302 2383 3.559069 TGGGAATCGTGGTAGTAGTAGG 58.441 50.000 0.00 0.00 0.00 3.18
303 2384 3.202818 TGGGAATCGTGGTAGTAGTAGGA 59.797 47.826 0.00 0.00 0.00 2.94
304 2385 3.819902 GGGAATCGTGGTAGTAGTAGGAG 59.180 52.174 0.00 0.00 0.00 3.69
449 2565 0.322187 GGGTCAATGTTAGTGCCGGT 60.322 55.000 1.90 0.00 0.00 5.28
503 2620 0.613292 TGCACGGCCCCAAATGTATT 60.613 50.000 0.00 0.00 0.00 1.89
517 2639 2.308347 TGTATTTGCACGCTCAAACG 57.692 45.000 5.03 0.00 38.58 3.60
523 2645 2.176546 CACGCTCAAACGCATGGG 59.823 61.111 8.44 8.44 36.19 4.00
535 2977 0.745845 CGCATGGGTTTCAGAGGGAG 60.746 60.000 0.68 0.00 0.00 4.30
570 3012 7.650649 GCAAAATGCACGAAAAGTAGTATAG 57.349 36.000 0.00 0.00 44.26 1.31
571 3013 7.241376 GCAAAATGCACGAAAAGTAGTATAGT 58.759 34.615 0.00 0.00 44.26 2.12
572 3014 8.385111 GCAAAATGCACGAAAAGTAGTATAGTA 58.615 33.333 0.00 0.00 44.26 1.82
597 3213 2.370849 AGGTAGAAAGCGAGTGGGAAAA 59.629 45.455 0.00 0.00 0.00 2.29
671 6454 2.752640 TCGTACGCAGCCTGCCTA 60.753 61.111 11.83 0.59 41.12 3.93
735 6520 1.227943 TCCTTCCACAGCACAGCAC 60.228 57.895 0.00 0.00 0.00 4.40
737 6522 2.591429 TTCCACAGCACAGCACCG 60.591 61.111 0.00 0.00 0.00 4.94
778 6563 2.366435 TCCCCCGATCCCAACCTC 60.366 66.667 0.00 0.00 0.00 3.85
779 6564 3.489513 CCCCCGATCCCAACCTCC 61.490 72.222 0.00 0.00 0.00 4.30
780 6565 2.366972 CCCCGATCCCAACCTCCT 60.367 66.667 0.00 0.00 0.00 3.69
781 6566 2.444256 CCCCGATCCCAACCTCCTC 61.444 68.421 0.00 0.00 0.00 3.71
782 6567 2.444256 CCCGATCCCAACCTCCTCC 61.444 68.421 0.00 0.00 0.00 4.30
783 6568 1.383248 CCGATCCCAACCTCCTCCT 60.383 63.158 0.00 0.00 0.00 3.69
784 6569 1.403687 CCGATCCCAACCTCCTCCTC 61.404 65.000 0.00 0.00 0.00 3.71
785 6570 1.403687 CGATCCCAACCTCCTCCTCC 61.404 65.000 0.00 0.00 0.00 4.30
786 6571 0.030603 GATCCCAACCTCCTCCTCCT 60.031 60.000 0.00 0.00 0.00 3.69
787 6572 0.030603 ATCCCAACCTCCTCCTCCTC 60.031 60.000 0.00 0.00 0.00 3.71
788 6573 1.690985 CCCAACCTCCTCCTCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
789 6574 1.690985 CCAACCTCCTCCTCCTCCC 60.691 68.421 0.00 0.00 0.00 4.30
822 6607 1.028330 ATCTCATGTGCGCCAACCAG 61.028 55.000 4.18 0.00 0.00 4.00
890 7249 1.204146 ATATTCACTCACCCGCACCT 58.796 50.000 0.00 0.00 0.00 4.00
895 7254 1.982938 ACTCACCCGCACCTACTCC 60.983 63.158 0.00 0.00 0.00 3.85
965 7329 2.584391 AACTCCGGAGAGCCCACAC 61.584 63.158 37.69 0.00 44.65 3.82
966 7330 2.997315 CTCCGGAGAGCCCACACA 60.997 66.667 28.21 0.00 32.13 3.72
967 7331 2.997315 TCCGGAGAGCCCACACAG 60.997 66.667 0.00 0.00 34.14 3.66
984 7348 1.612950 ACAGCACAGAGTCAGTGAGAG 59.387 52.381 18.91 9.68 39.30 3.20
985 7349 1.612950 CAGCACAGAGTCAGTGAGAGT 59.387 52.381 18.91 0.00 39.30 3.24
993 7357 3.756434 AGAGTCAGTGAGAGTTGCTAGTC 59.244 47.826 0.00 0.00 0.00 2.59
1025 7389 3.423154 GTGCGCCTTCTTGTCCCG 61.423 66.667 4.18 0.00 0.00 5.14
1073 7437 1.626654 CTCGGTGATGTGGTTGCGAC 61.627 60.000 0.00 0.00 0.00 5.19
1075 7439 1.959226 GGTGATGTGGTTGCGACGT 60.959 57.895 0.00 0.00 0.00 4.34
1245 7609 1.412710 GTCATGGCCGTCATCTTCCTA 59.587 52.381 0.00 0.00 32.92 2.94
1309 7673 2.499303 AATGGCGGGCAAGGCTTAGT 62.499 55.000 8.78 0.00 37.59 2.24
1411 7777 8.404000 TGAGATGATCGGTAGAGTTTAGTTTAC 58.596 37.037 0.00 0.00 0.00 2.01
1435 7805 2.010145 TTAGAGTGAACGCTCCATGC 57.990 50.000 11.07 0.00 36.20 4.06
1445 7815 2.557805 CTCCATGCGTGTGTGTGC 59.442 61.111 4.96 0.00 0.00 4.57
1461 7845 1.592131 TGCGTGTCACCGTGGTAAC 60.592 57.895 0.00 0.00 0.00 2.50
1534 7918 7.211897 TGGGATTTGAGAATGAGATTTAGGA 57.788 36.000 0.00 0.00 0.00 2.94
1572 7959 1.354040 CTGAGCTAGCACGGTTCTTG 58.646 55.000 18.83 0.00 0.00 3.02
1580 7967 4.083271 GCTAGCACGGTTCTTGAAATCTTT 60.083 41.667 10.63 0.00 0.00 2.52
1687 8074 5.756195 TTCTTCCAATGTTTGTCTGACAG 57.244 39.130 10.77 0.00 0.00 3.51
1767 8160 0.456653 GCACATCAAACCGTCCATGC 60.457 55.000 0.00 0.00 0.00 4.06
1768 8161 0.179192 CACATCAAACCGTCCATGCG 60.179 55.000 0.00 0.00 0.00 4.73
1788 8181 3.928211 CGTTGAGCAAAATACTCCATCG 58.072 45.455 0.00 0.00 32.98 3.84
1849 8248 9.543018 CAGTTTCGGTTAATCTTTGAATCTAAC 57.457 33.333 0.00 0.00 0.00 2.34
1918 8326 2.957006 AGCTCGATCACCGTAATAACCT 59.043 45.455 0.00 0.00 39.75 3.50
1925 8333 2.424601 TCACCGTAATAACCTCGTCAGG 59.575 50.000 0.00 0.00 46.87 3.86
1956 8364 3.340814 AAATGACACCCTAGCAGAGTG 57.659 47.619 0.00 0.00 37.53 3.51
1985 8394 3.064820 CCAACCTCGATCCCGTAATTTTG 59.935 47.826 0.00 0.00 37.05 2.44
2011 8420 1.059369 CTTCAAATCGAGCACGCGG 59.941 57.895 12.47 0.00 39.58 6.46
2076 8485 1.399343 CGTCGAGCGTGTTCTAGTGAA 60.399 52.381 0.00 0.00 35.54 3.18
2114 8523 2.388232 GCCGTTCCGTCGAATTGCT 61.388 57.895 0.00 0.00 0.00 3.91
2160 8570 6.313658 ACCTTTCTTCAACAACAAAGAAATGC 59.686 34.615 9.86 0.00 45.47 3.56
2188 8601 4.163268 CCTTTGGGGTTTTCCTCTTTTCAA 59.837 41.667 0.00 0.00 42.05 2.69
2200 8613 3.142174 CTCTTTTCAAAAGGAGACCGCT 58.858 45.455 10.06 0.00 42.71 5.52
2279 8692 1.293924 GGCCGAGACACAATCATCAG 58.706 55.000 0.00 0.00 0.00 2.90
2357 8770 3.583054 CACCCAATGCTGAGGACAT 57.417 52.632 0.00 0.00 0.00 3.06
2457 8870 4.281435 TGAAAGAATTGCCTTGCATCTTGA 59.719 37.500 5.88 0.00 37.04 3.02
2459 8872 4.184079 AGAATTGCCTTGCATCTTGAAC 57.816 40.909 0.00 0.00 38.76 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.218759 CGACTCGCGGGATTTAATTCAG 59.781 50.000 15.95 0.00 36.03 3.02
107 2166 1.144565 CGCTCTCATCTCCTGTTGCG 61.145 60.000 0.00 0.00 34.71 4.85
110 2169 0.108424 GTGCGCTCTCATCTCCTGTT 60.108 55.000 9.73 0.00 0.00 3.16
116 2175 1.138459 CGAGTGTGCGCTCTCATCT 59.862 57.895 24.43 10.82 35.59 2.90
117 2176 3.685592 CGAGTGTGCGCTCTCATC 58.314 61.111 24.43 11.61 35.59 2.92
172 2237 0.911769 TCGGCTTCATTCACCTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
201 2271 4.981054 TCTACGTACGTGCAAACATTTACA 59.019 37.500 30.25 4.83 0.00 2.41
225 2306 2.032620 CCTGCCCTACTACCTACAGTG 58.967 57.143 0.00 0.00 0.00 3.66
288 2369 6.155475 ACTAGTACTCCTACTACTACCACG 57.845 45.833 0.00 0.00 34.79 4.94
292 2373 6.801575 ACACGACTAGTACTCCTACTACTAC 58.198 44.000 0.00 0.00 34.79 2.73
293 2374 7.255312 GCTACACGACTAGTACTCCTACTACTA 60.255 44.444 0.00 0.00 34.79 1.82
294 2375 5.930837 ACACGACTAGTACTCCTACTACT 57.069 43.478 0.00 0.00 34.79 2.57
295 2376 5.689961 GCTACACGACTAGTACTCCTACTAC 59.310 48.000 0.00 0.00 34.79 2.73
296 2377 5.221342 GGCTACACGACTAGTACTCCTACTA 60.221 48.000 0.00 0.00 34.79 1.82
297 2378 4.442753 GGCTACACGACTAGTACTCCTACT 60.443 50.000 0.00 0.00 37.04 2.57
298 2379 3.807071 GGCTACACGACTAGTACTCCTAC 59.193 52.174 0.00 0.00 0.00 3.18
299 2380 3.708631 AGGCTACACGACTAGTACTCCTA 59.291 47.826 0.00 0.00 0.00 2.94
300 2381 2.504996 AGGCTACACGACTAGTACTCCT 59.495 50.000 0.00 0.00 0.00 3.69
301 2382 2.916640 AGGCTACACGACTAGTACTCC 58.083 52.381 0.00 0.00 0.00 3.85
371 2478 2.185608 GAGGAGAGGACGGCTTGC 59.814 66.667 0.00 0.00 0.00 4.01
372 2479 2.492090 CGAGGAGAGGACGGCTTG 59.508 66.667 0.00 0.00 0.00 4.01
503 2620 1.370293 CATGCGTTTGAGCGTGCAA 60.370 52.632 0.00 0.00 45.54 4.08
517 2639 0.394899 CCTCCCTCTGAAACCCATGC 60.395 60.000 0.00 0.00 0.00 4.06
523 2645 0.693049 TCCTTGCCTCCCTCTGAAAC 59.307 55.000 0.00 0.00 0.00 2.78
535 2977 2.931969 GTGCATTTTGCTATTCCTTGCC 59.068 45.455 0.00 0.00 45.31 4.52
568 3010 4.815308 CACTCGCTTTCTACCTAGCTACTA 59.185 45.833 0.00 0.00 35.25 1.82
569 3011 3.628487 CACTCGCTTTCTACCTAGCTACT 59.372 47.826 0.00 0.00 35.25 2.57
570 3012 3.243134 CCACTCGCTTTCTACCTAGCTAC 60.243 52.174 0.00 0.00 35.25 3.58
571 3013 2.950309 CCACTCGCTTTCTACCTAGCTA 59.050 50.000 0.00 0.00 35.25 3.32
572 3014 1.751924 CCACTCGCTTTCTACCTAGCT 59.248 52.381 0.00 0.00 35.25 3.32
597 3213 6.015940 CCAGTTTCATACAAGCTTCCTTCTTT 60.016 38.462 0.00 0.00 0.00 2.52
671 6454 4.345854 AGTAGTTGGCTCTGTACTAGCTT 58.654 43.478 16.86 6.74 39.97 3.74
778 6563 3.039526 AGGAGGGGGAGGAGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
779 6564 2.018086 AGAGGAGGGGGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
780 6565 2.015726 GAGAGGAGGGGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
781 6566 2.018086 AGAGAGGAGGGGGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
782 6567 1.541672 GAGAGAGGAGGGGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
783 6568 2.015726 GGAGAGAGGAGGGGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
784 6569 1.891296 TTGGAGAGAGGAGGGGGAGG 61.891 65.000 0.00 0.00 0.00 4.30
785 6570 0.267356 ATTGGAGAGAGGAGGGGGAG 59.733 60.000 0.00 0.00 0.00 4.30
786 6571 0.266152 GATTGGAGAGAGGAGGGGGA 59.734 60.000 0.00 0.00 0.00 4.81
787 6572 0.267356 AGATTGGAGAGAGGAGGGGG 59.733 60.000 0.00 0.00 0.00 5.40
788 6573 1.062581 TGAGATTGGAGAGAGGAGGGG 60.063 57.143 0.00 0.00 0.00 4.79
789 6574 2.468301 TGAGATTGGAGAGAGGAGGG 57.532 55.000 0.00 0.00 0.00 4.30
890 7249 3.596956 AGAAGAGGGTTAGTGGAGGAGTA 59.403 47.826 0.00 0.00 0.00 2.59
895 7254 2.167487 GAGCAGAAGAGGGTTAGTGGAG 59.833 54.545 0.00 0.00 0.00 3.86
965 7329 1.612950 ACTCTCACTGACTCTGTGCTG 59.387 52.381 10.45 6.80 34.16 4.41
966 7330 1.993956 ACTCTCACTGACTCTGTGCT 58.006 50.000 10.45 0.00 34.16 4.40
967 7331 2.402305 CAACTCTCACTGACTCTGTGC 58.598 52.381 10.45 0.00 34.16 4.57
1245 7609 0.031515 TCCTGGTGACCCGGATGTAT 60.032 55.000 11.01 0.00 39.78 2.29
1299 7663 4.400884 TCTGAGCTCTTCTACTAAGCCTTG 59.599 45.833 16.19 0.00 36.69 3.61
1309 7673 3.271729 CAGTACCGTCTGAGCTCTTCTA 58.728 50.000 16.19 0.00 37.61 2.10
1411 7777 2.288825 TGGAGCGTTCACTCTAAACCAG 60.289 50.000 0.53 0.00 36.87 4.00
1435 7805 2.319707 GTGACACGCACACACACG 59.680 61.111 0.00 0.00 46.91 4.49
1445 7815 2.420628 TTAGTTACCACGGTGACACG 57.579 50.000 10.28 0.00 37.12 4.49
1461 7845 8.378172 TGACAAACTACAGATTTCCAGTTTAG 57.622 34.615 0.00 0.00 38.75 1.85
1534 7918 1.336755 AGCCGATGTTTCGCTGTTTTT 59.663 42.857 0.00 0.00 44.12 1.94
1572 7959 6.018994 AGCACGGATACACGATTAAAGATTTC 60.019 38.462 0.00 0.00 37.61 2.17
1580 7967 2.686405 ACAGAGCACGGATACACGATTA 59.314 45.455 0.00 0.00 37.61 1.75
1687 8074 4.351192 ACGATGTTTCACTTTTGCTCAAC 58.649 39.130 0.00 0.00 0.00 3.18
1767 8160 3.370978 ACGATGGAGTATTTTGCTCAACG 59.629 43.478 0.00 0.00 34.83 4.10
1768 8161 4.651994 CACGATGGAGTATTTTGCTCAAC 58.348 43.478 0.00 0.00 34.83 3.18
1891 8290 1.389555 ACGGTGATCGAGCTGATGTA 58.610 50.000 0.90 0.00 42.43 2.29
1892 8291 1.389555 TACGGTGATCGAGCTGATGT 58.610 50.000 0.90 0.00 42.43 3.06
1893 8292 2.492019 TTACGGTGATCGAGCTGATG 57.508 50.000 0.90 0.00 42.43 3.07
1894 8293 4.547532 GTTATTACGGTGATCGAGCTGAT 58.452 43.478 0.90 0.00 42.43 2.90
1895 8294 3.243301 GGTTATTACGGTGATCGAGCTGA 60.243 47.826 0.90 0.00 42.43 4.26
1897 8296 2.957006 AGGTTATTACGGTGATCGAGCT 59.043 45.455 0.90 0.00 42.43 4.09
1918 8326 5.237779 GTCATTTTGGACTAAAACCTGACGA 59.762 40.000 12.26 0.00 40.80 4.20
1925 8333 5.784578 AGGGTGTCATTTTGGACTAAAAC 57.215 39.130 0.00 0.00 40.80 2.43
1956 8364 1.475213 GGGATCGAGGTTGGAATGACC 60.475 57.143 0.00 0.00 37.44 4.02
1985 8394 1.432270 CTCGATTTGAAGGCGCTCCC 61.432 60.000 7.64 0.00 0.00 4.30
2076 8485 2.543653 GCTGTTCGGTCATGCAAAAACT 60.544 45.455 0.00 0.00 0.00 2.66
2114 8523 2.738139 CTGGCGTGCATGTCGTCA 60.738 61.111 15.93 15.93 40.54 4.35
2160 8570 3.567478 GAAAACCCCAAAGGCGCGG 62.567 63.158 8.83 0.00 40.58 6.46
2188 8601 3.077359 CTGAAATGAAGCGGTCTCCTTT 58.923 45.455 0.00 0.00 0.00 3.11
2200 8613 3.374988 CCTATGCAAGCGTCTGAAATGAA 59.625 43.478 0.00 0.00 0.00 2.57
2225 8638 4.754114 GTCATCCCATGAATCTACAAGAGC 59.246 45.833 0.00 0.00 41.69 4.09
2254 8667 1.667724 GATTGTGTCTCGGCCATTCAG 59.332 52.381 2.24 0.00 0.00 3.02
2255 8668 1.003003 TGATTGTGTCTCGGCCATTCA 59.997 47.619 2.24 0.00 0.00 2.57
2279 8692 4.241590 TCAATGAACACTTTGATGCACC 57.758 40.909 0.00 0.00 0.00 5.01
2357 8770 0.533531 CATCGCTAGAAGCATGGCCA 60.534 55.000 8.56 8.56 42.58 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.