Multiple sequence alignment - TraesCS1D01G162900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G162900 chr1D 100.000 9859 0 0 1 9859 233788072 233797930 0.000000e+00 18207.0
1 TraesCS1D01G162900 chr1D 90.854 164 15 0 5998 6161 463381905 463382068 4.640000e-53 220.0
2 TraesCS1D01G162900 chr1D 88.506 87 8 1 5641 5725 246951994 246951908 4.870000e-18 104.0
3 TraesCS1D01G162900 chr1B 95.192 2891 69 15 3973 6819 368408360 368411224 0.000000e+00 4505.0
4 TraesCS1D01G162900 chr1B 97.039 2195 42 6 1783 3976 368406096 368408268 0.000000e+00 3672.0
5 TraesCS1D01G162900 chr1B 90.387 1446 67 29 6 1441 368404326 368405709 0.000000e+00 1834.0
6 TraesCS1D01G162900 chr1B 93.667 900 50 6 8188 9085 368412525 368413419 0.000000e+00 1339.0
7 TraesCS1D01G162900 chr1B 94.110 815 14 11 6817 7629 368411324 368412106 0.000000e+00 1208.0
8 TraesCS1D01G162900 chr1B 86.364 770 29 19 9093 9808 368413478 368414225 0.000000e+00 771.0
9 TraesCS1D01G162900 chr1B 95.166 331 16 0 1438 1768 368405781 368406111 3.150000e-144 523.0
10 TraesCS1D01G162900 chr1B 94.393 214 11 1 7939 8152 368412314 368412526 2.660000e-85 327.0
11 TraesCS1D01G162900 chr1B 91.358 162 14 0 5998 6159 53067351 53067512 1.290000e-53 222.0
12 TraesCS1D01G162900 chr1B 88.889 90 8 1 5638 5725 331129068 331129157 1.050000e-19 110.0
13 TraesCS1D01G162900 chr1B 98.039 51 0 1 7633 7682 368412266 368412316 4.910000e-13 87.9
14 TraesCS1D01G162900 chr1A 95.160 1777 69 11 2838 4605 313910237 313908469 0.000000e+00 2789.0
15 TraesCS1D01G162900 chr1A 91.070 1926 97 25 7939 9808 313904878 313902972 0.000000e+00 2534.0
16 TraesCS1D01G162900 chr1A 93.359 1551 52 8 4601 6118 313908390 313906858 0.000000e+00 2246.0
17 TraesCS1D01G162900 chr1A 93.585 1325 44 17 449 1772 313912970 313911686 0.000000e+00 1938.0
18 TraesCS1D01G162900 chr1A 96.150 961 30 2 1882 2839 313911409 313910453 0.000000e+00 1563.0
19 TraesCS1D01G162900 chr1A 94.880 996 18 10 6703 7682 313905854 313904876 0.000000e+00 1526.0
20 TraesCS1D01G162900 chr1A 98.154 596 9 2 6111 6705 313906529 313905935 0.000000e+00 1038.0
21 TraesCS1D01G162900 chr1A 96.610 118 4 0 1783 1900 313911705 313911588 7.810000e-46 196.0
22 TraesCS1D01G162900 chr1A 80.263 228 34 9 3998 4219 14043088 14042866 2.850000e-35 161.0
23 TraesCS1D01G162900 chr7A 93.077 390 25 2 5045 5434 234330127 234329740 4.000000e-158 569.0
24 TraesCS1D01G162900 chr7A 92.564 390 26 2 5045 5434 554936791 554937177 3.110000e-154 556.0
25 TraesCS1D01G162900 chr7A 93.116 276 12 6 7681 7951 717840037 717839764 2.000000e-106 398.0
26 TraesCS1D01G162900 chr7A 78.125 352 53 19 305 650 95604653 95604320 1.680000e-47 202.0
27 TraesCS1D01G162900 chr7A 89.844 128 10 2 5517 5642 554937172 554937298 2.850000e-35 161.0
28 TraesCS1D01G162900 chr7A 89.600 125 10 2 5520 5642 234329742 234329619 1.330000e-33 156.0
29 TraesCS1D01G162900 chr7A 93.069 101 5 1 3991 4091 188573588 188573686 7.980000e-31 147.0
30 TraesCS1D01G162900 chr6A 93.077 390 26 1 5045 5434 351964831 351965219 4.000000e-158 569.0
31 TraesCS1D01G162900 chr6A 91.824 159 13 0 6003 6161 27786231 27786389 1.290000e-53 222.0
32 TraesCS1D01G162900 chr6A 89.062 128 11 2 5517 5642 351965214 351965340 1.330000e-33 156.0
33 TraesCS1D01G162900 chr6A 91.304 92 5 2 5425 5513 594831601 594831692 1.340000e-23 122.0
34 TraesCS1D01G162900 chr5A 93.247 385 25 1 5045 5429 495422327 495421944 5.170000e-157 566.0
35 TraesCS1D01G162900 chr5A 96.604 265 3 4 7680 7941 38187662 38187401 1.520000e-117 435.0
36 TraesCS1D01G162900 chr5A 94.030 268 12 3 7678 7942 490049350 490049084 4.290000e-108 403.0
37 TraesCS1D01G162900 chr5A 88.800 125 11 2 5520 5642 495421941 495421818 6.170000e-32 150.0
38 TraesCS1D01G162900 chr5A 92.222 90 5 1 5433 5520 390156987 390157076 1.040000e-24 126.0
39 TraesCS1D01G162900 chr5A 89.362 94 8 1 5426 5517 479748906 479748999 6.260000e-22 117.0
40 TraesCS1D01G162900 chr5A 85.227 88 13 0 563 650 533342601 533342514 3.790000e-14 91.6
41 TraesCS1D01G162900 chr5A 92.857 42 2 1 30 70 537951809 537951850 1.070000e-04 60.2
42 TraesCS1D01G162900 chr5A 85.455 55 6 2 4079 4132 350268388 350268335 1.000000e-03 56.5
43 TraesCS1D01G162900 chr6B 92.308 390 24 2 5045 5434 44864601 44864218 5.210000e-152 549.0
44 TraesCS1D01G162900 chr6B 88.889 171 19 0 5996 6166 583051364 583051194 2.790000e-50 211.0
45 TraesCS1D01G162900 chr6B 91.200 125 8 2 5520 5642 44864220 44864097 6.120000e-37 167.0
46 TraesCS1D01G162900 chr6B 82.902 193 24 9 304 492 348118659 348118846 2.200000e-36 165.0
47 TraesCS1D01G162900 chr6B 90.476 105 8 1 3989 4093 637093654 637093552 4.800000e-28 137.0
48 TraesCS1D01G162900 chr6B 74.010 404 63 24 125 495 23355085 23355479 1.040000e-24 126.0
49 TraesCS1D01G162900 chr5B 89.801 402 23 4 5045 5434 248560775 248561170 5.320000e-137 499.0
50 TraesCS1D01G162900 chr5B 89.062 128 11 2 5517 5642 248561165 248561291 1.330000e-33 156.0
51 TraesCS1D01G162900 chr5B 77.733 247 33 14 135 369 141498469 141498705 2.230000e-26 132.0
52 TraesCS1D01G162900 chr5B 77.273 198 28 11 120 309 663631849 663631661 6.300000e-17 100.0
53 TraesCS1D01G162900 chr5B 84.507 71 4 5 519 585 230360160 230360093 8.270000e-06 63.9
54 TraesCS1D01G162900 chr2B 89.950 398 22 4 5045 5430 116832197 116831806 1.910000e-136 497.0
55 TraesCS1D01G162900 chr2B 76.126 444 56 27 94 495 409402860 409403295 4.700000e-43 187.0
56 TraesCS1D01G162900 chr2B 90.244 123 9 2 5522 5642 116831802 116831681 3.690000e-34 158.0
57 TraesCS1D01G162900 chr3B 95.094 265 9 3 7680 7941 432599530 432599267 1.980000e-111 414.0
58 TraesCS1D01G162900 chr3B 94.030 268 12 3 7678 7942 501121328 501121594 4.290000e-108 403.0
59 TraesCS1D01G162900 chr3B 83.060 183 21 9 3988 4165 743840990 743840813 3.690000e-34 158.0
60 TraesCS1D01G162900 chr3A 94.340 265 11 3 7681 7942 5880153 5880416 4.290000e-108 403.0
61 TraesCS1D01G162900 chr3A 94.340 265 11 3 7681 7942 5910504 5910767 4.290000e-108 403.0
62 TraesCS1D01G162900 chr3A 94.340 265 11 3 7681 7942 5947587 5947850 4.290000e-108 403.0
63 TraesCS1D01G162900 chr3A 94.340 265 11 3 7681 7942 6218864 6219127 4.290000e-108 403.0
64 TraesCS1D01G162900 chr3A 81.938 227 27 10 52 269 137903785 137903564 7.870000e-41 180.0
65 TraesCS1D01G162900 chr3D 80.742 431 55 16 86 495 393649655 393649232 2.670000e-80 311.0
66 TraesCS1D01G162900 chr3D 77.609 460 64 24 36 471 129262047 129261603 9.890000e-60 243.0
67 TraesCS1D01G162900 chr3D 89.326 178 18 1 5996 6173 537154865 537154689 1.290000e-53 222.0
68 TraesCS1D01G162900 chr3D 89.583 96 8 1 5433 5526 107462635 107462730 4.840000e-23 121.0
69 TraesCS1D01G162900 chr3D 88.889 99 9 1 5417 5513 526509281 526509379 4.840000e-23 121.0
70 TraesCS1D01G162900 chr2D 75.889 647 92 45 51 653 85681319 85681945 1.260000e-68 272.0
71 TraesCS1D01G162900 chr2D 75.617 648 95 45 51 653 85682431 85683060 7.590000e-66 263.0
72 TraesCS1D01G162900 chr2D 82.258 186 22 10 3990 4166 614841023 614840840 6.170000e-32 150.0
73 TraesCS1D01G162900 chr2D 80.952 189 25 10 280 467 15683711 15683533 1.340000e-28 139.0
74 TraesCS1D01G162900 chr7D 75.884 622 70 43 34 641 153126228 153125673 2.750000e-60 244.0
75 TraesCS1D01G162900 chr7D 78.531 354 54 17 305 650 93092401 93092062 7.760000e-51 213.0
76 TraesCS1D01G162900 chr7D 88.757 169 19 0 5994 6162 454079243 454079411 3.610000e-49 207.0
77 TraesCS1D01G162900 chr7D 76.224 429 60 20 36 441 571723893 571724302 1.310000e-43 189.0
78 TraesCS1D01G162900 chr7D 79.026 267 33 21 58 310 63383815 63384072 2.850000e-35 161.0
79 TraesCS1D01G162900 chr7D 89.655 87 6 2 5641 5725 551835381 551835466 3.770000e-19 108.0
80 TraesCS1D01G162900 chr7B 75.158 632 79 45 31 647 115200488 115199920 9.960000e-55 226.0
81 TraesCS1D01G162900 chr7B 93.103 87 4 1 5432 5516 228390936 228390850 1.040000e-24 126.0
82 TraesCS1D01G162900 chr6D 90.854 164 15 0 5997 6160 90135052 90134889 4.640000e-53 220.0
83 TraesCS1D01G162900 chr6D 90.854 164 15 0 5998 6161 93646226 93646389 4.640000e-53 220.0
84 TraesCS1D01G162900 chr6D 90.419 167 15 1 5998 6164 431160668 431160833 1.670000e-52 219.0
85 TraesCS1D01G162900 chr6D 91.209 91 6 1 5425 5513 387886082 387885992 1.340000e-23 122.0
86 TraesCS1D01G162900 chr2A 88.398 181 17 3 5981 6159 70985762 70985584 2.160000e-51 215.0
87 TraesCS1D01G162900 chr2A 89.759 166 17 0 5996 6161 12003271 12003436 7.760000e-51 213.0
88 TraesCS1D01G162900 chr2A 77.660 376 51 19 31 380 572454225 572453857 2.170000e-46 198.0
89 TraesCS1D01G162900 chr2A 78.498 293 37 20 52 329 662895672 662895391 1.700000e-37 169.0
90 TraesCS1D01G162900 chr2A 74.278 381 53 28 139 478 37093471 37093095 1.740000e-22 119.0
91 TraesCS1D01G162900 chr4B 80.567 247 32 11 58 294 405944549 405944309 1.020000e-39 176.0
92 TraesCS1D01G162900 chr4B 88.372 129 12 2 4021 4149 167934228 167934103 1.720000e-32 152.0
93 TraesCS1D01G162900 chr4B 94.048 84 3 1 5641 5722 140891347 140891430 1.040000e-24 126.0
94 TraesCS1D01G162900 chr5D 80.080 251 34 15 36 274 522690528 522690282 1.320000e-38 172.0
95 TraesCS1D01G162900 chr5D 82.857 70 7 4 519 586 215148081 215148015 3.850000e-04 58.4
96 TraesCS1D01G162900 chr4D 88.393 112 10 2 4021 4132 108861278 108861386 2.230000e-26 132.0
97 TraesCS1D01G162900 chr4D 92.308 91 5 1 5433 5521 258897757 258897667 2.890000e-25 128.0
98 TraesCS1D01G162900 chr4D 90.323 93 6 2 5635 5725 365838510 365838419 1.740000e-22 119.0
99 TraesCS1D01G162900 chr4D 91.667 84 5 1 5641 5722 98933388 98933471 2.250000e-21 115.0
100 TraesCS1D01G162900 chr4A 90.110 91 6 2 5635 5723 99032980 99033069 2.250000e-21 115.0
101 TraesCS1D01G162900 chr4A 88.710 62 5 2 1 60 453295874 453295935 3.820000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G162900 chr1D 233788072 233797930 9858 False 18207.000000 18207 100.000000 1 9859 1 chr1D.!!$F1 9858
1 TraesCS1D01G162900 chr1B 368404326 368414225 9899 False 1585.211111 4505 93.817444 6 9808 9 chr1B.!!$F3 9802
2 TraesCS1D01G162900 chr1A 313902972 313912970 9998 True 1728.750000 2789 94.871000 449 9808 8 chr1A.!!$R2 9359
3 TraesCS1D01G162900 chr7A 234329619 234330127 508 True 362.500000 569 91.338500 5045 5642 2 chr7A.!!$R3 597
4 TraesCS1D01G162900 chr7A 554936791 554937298 507 False 358.500000 556 91.204000 5045 5642 2 chr7A.!!$F2 597
5 TraesCS1D01G162900 chr6A 351964831 351965340 509 False 362.500000 569 91.069500 5045 5642 2 chr6A.!!$F3 597
6 TraesCS1D01G162900 chr5A 495421818 495422327 509 True 358.000000 566 91.023500 5045 5642 2 chr5A.!!$R5 597
7 TraesCS1D01G162900 chr6B 44864097 44864601 504 True 358.000000 549 91.754000 5045 5642 2 chr6B.!!$R3 597
8 TraesCS1D01G162900 chr5B 248560775 248561291 516 False 327.500000 499 89.431500 5045 5642 2 chr5B.!!$F2 597
9 TraesCS1D01G162900 chr2B 116831681 116832197 516 True 327.500000 497 90.097000 5045 5642 2 chr2B.!!$R1 597
10 TraesCS1D01G162900 chr2D 85681319 85683060 1741 False 267.500000 272 75.753000 51 653 2 chr2D.!!$F1 602
11 TraesCS1D01G162900 chr7D 153125673 153126228 555 True 244.000000 244 75.884000 34 641 1 chr7D.!!$R2 607
12 TraesCS1D01G162900 chr7B 115199920 115200488 568 True 226.000000 226 75.158000 31 647 1 chr7B.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 2100 3.000971 GCGGAAGTAGAAATCGAAGAACG 60.001 47.826 0.00 0.00 43.58 3.95 F
1307 2551 0.179034 TGGTGGGGCAAAATTTGTGC 60.179 50.000 7.60 2.74 41.45 4.57 F
1720 3039 0.237498 GGTAACAACCTGTCTTGCGC 59.763 55.000 0.00 0.00 0.00 6.09 F
1754 3073 1.131638 TTGGAGAGCTGACAACCTGT 58.868 50.000 0.00 0.00 0.00 4.00 F
3040 4777 1.231221 TGGTGGAAATTTGGTCGTCG 58.769 50.000 0.00 0.00 0.00 5.12 F
3788 5539 0.178950 TTGTGGCTTATGCAACCCCA 60.179 50.000 5.71 0.00 42.34 4.96 F
3929 5680 4.950205 TTTCGTCCTCTGGTTTACTCTT 57.050 40.909 0.00 0.00 0.00 2.85 F
5872 7859 0.037303 ATGCAGGGTGTCACTTGGAG 59.963 55.000 2.35 0.00 0.00 3.86 F
7585 10145 1.007118 TGGACTGTAGATGCTCCAGGA 59.993 52.381 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 3508 2.105821 ACAAGTGCAAGCCTAACTACCA 59.894 45.455 0.00 0.00 0.00 3.25 R
3079 4816 0.689055 ACAGAAGACAGCTGATGGCA 59.311 50.000 23.35 0.00 40.68 4.92 R
3516 5253 2.146342 ACCGTTTCTTCAGCATCTGTG 58.854 47.619 0.00 0.00 32.61 3.66 R
3517 5254 2.550830 ACCGTTTCTTCAGCATCTGT 57.449 45.000 0.00 0.00 32.61 3.41 R
3929 5680 0.622136 ATGCCAAGATGCCTCACTGA 59.378 50.000 0.00 0.00 0.00 3.41 R
5441 7409 1.841277 ACGCCCTTATGTTATGGGACA 59.159 47.619 9.14 0.00 43.93 4.02 R
5928 7915 0.747283 CAGGCAGGATTCAGAGGTGC 60.747 60.000 0.00 0.00 0.00 5.01 R
7684 10401 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30 R
9358 12143 0.037512 TCTGCAGCTGAGCTCAGTTC 60.038 55.000 37.25 27.08 45.45 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 372 9.522804 TTAACACTTTTTGAATACATGGTCAAC 57.477 29.630 7.90 0.00 33.58 3.18
250 373 7.106439 ACACTTTTTGAATACATGGTCAACA 57.894 32.000 7.90 0.94 33.58 3.33
252 375 8.855110 ACACTTTTTGAATACATGGTCAACATA 58.145 29.630 7.90 0.00 37.84 2.29
267 390 9.881773 ATGGTCAACATATTTCTATACCCATTT 57.118 29.630 0.00 0.00 38.26 2.32
638 1882 3.090037 TCCCTACATCTCGCTATAAGCC 58.910 50.000 0.00 0.00 38.18 4.35
856 2100 3.000971 GCGGAAGTAGAAATCGAAGAACG 60.001 47.826 0.00 0.00 43.58 3.95
977 2221 4.112341 CAAGCAGAAGCAGCCGCC 62.112 66.667 0.00 0.00 45.49 6.13
1307 2551 0.179034 TGGTGGGGCAAAATTTGTGC 60.179 50.000 7.60 2.74 41.45 4.57
1351 2595 2.490991 AGGTCGTTAAAGCAGTTGGTC 58.509 47.619 0.00 0.00 0.00 4.02
1490 2809 1.359130 AGATCAAAGGGAAGGGTTGGG 59.641 52.381 0.00 0.00 0.00 4.12
1577 2896 9.976776 ATCATATTGCATCTGAGGAGATTATTT 57.023 29.630 0.00 0.00 36.75 1.40
1720 3039 0.237498 GGTAACAACCTGTCTTGCGC 59.763 55.000 0.00 0.00 0.00 6.09
1743 3062 5.618640 GCATTTTGATCGGATATTGGAGAGC 60.619 44.000 0.00 0.00 0.00 4.09
1752 3071 3.135530 GGATATTGGAGAGCTGACAACCT 59.864 47.826 0.00 0.00 0.00 3.50
1753 3072 2.486472 ATTGGAGAGCTGACAACCTG 57.514 50.000 0.00 0.00 0.00 4.00
1754 3073 1.131638 TTGGAGAGCTGACAACCTGT 58.868 50.000 0.00 0.00 0.00 4.00
1766 3085 2.812011 GACAACCTGTCATGGTGTTACC 59.188 50.000 0.00 0.00 46.22 2.85
1767 3086 2.441750 ACAACCTGTCATGGTGTTACCT 59.558 45.455 0.00 0.00 40.73 3.08
1768 3087 3.117663 ACAACCTGTCATGGTGTTACCTT 60.118 43.478 0.00 0.00 40.73 3.50
1769 3088 3.876309 ACCTGTCATGGTGTTACCTTT 57.124 42.857 0.00 0.00 39.58 3.11
1770 3089 4.178956 ACCTGTCATGGTGTTACCTTTT 57.821 40.909 0.00 0.00 39.58 2.27
1771 3090 4.542697 ACCTGTCATGGTGTTACCTTTTT 58.457 39.130 0.00 0.00 39.58 1.94
1823 3142 1.455786 CGTAGAAACACAAGCACGAGG 59.544 52.381 0.00 0.00 0.00 4.63
1827 3146 2.037772 AGAAACACAAGCACGAGGATCT 59.962 45.455 0.00 0.00 0.00 2.75
1911 3427 7.702348 AGAAAAAGTTCTTTGACGAATGGAAAG 59.298 33.333 0.00 0.00 41.55 2.62
2011 3528 2.778299 TGGTAGTTAGGCTTGCACTTG 58.222 47.619 0.00 0.00 0.00 3.16
2053 3570 6.394809 TGAATAACTCATCTGCGACAGTTTA 58.605 36.000 6.72 1.03 32.61 2.01
2409 3926 1.490490 GCATCATGGGAGGGTACAGAA 59.510 52.381 0.00 0.00 0.00 3.02
2459 3976 3.069443 TCTGTTCTCATATATGCGGTGCA 59.931 43.478 7.92 0.00 44.86 4.57
2827 4347 8.383175 TGGGTTCTTAGACATCTTGTTTTAGAT 58.617 33.333 0.00 0.00 35.26 1.98
2868 4605 6.432162 ACACAGTAACCTCTTGACGTAGATAA 59.568 38.462 0.00 0.00 0.00 1.75
3040 4777 1.231221 TGGTGGAAATTTGGTCGTCG 58.769 50.000 0.00 0.00 0.00 5.12
3339 5076 5.127194 ACTCGCCAATTATCTGAAGACACTA 59.873 40.000 0.00 0.00 0.00 2.74
3516 5253 5.764686 TGCATGATCTATAATGTCAACCACC 59.235 40.000 0.00 0.00 0.00 4.61
3517 5254 5.764686 GCATGATCTATAATGTCAACCACCA 59.235 40.000 0.00 0.00 0.00 4.17
3518 5255 6.293626 GCATGATCTATAATGTCAACCACCAC 60.294 42.308 0.00 0.00 0.00 4.16
3745 5496 2.639065 ACGTGGTGTTGACTGTTCATT 58.361 42.857 0.00 0.00 0.00 2.57
3746 5497 3.013921 ACGTGGTGTTGACTGTTCATTT 58.986 40.909 0.00 0.00 0.00 2.32
3747 5498 4.193090 ACGTGGTGTTGACTGTTCATTTA 58.807 39.130 0.00 0.00 0.00 1.40
3748 5499 4.034742 ACGTGGTGTTGACTGTTCATTTAC 59.965 41.667 0.00 0.00 0.00 2.01
3749 5500 4.034626 CGTGGTGTTGACTGTTCATTTACA 59.965 41.667 0.00 0.00 0.00 2.41
3757 5508 3.902261 CTGTTCATTTACAGCTGTGCA 57.098 42.857 29.57 15.62 39.12 4.57
3758 5509 4.430137 CTGTTCATTTACAGCTGTGCAT 57.570 40.909 29.57 17.21 39.12 3.96
3788 5539 0.178950 TTGTGGCTTATGCAACCCCA 60.179 50.000 5.71 0.00 42.34 4.96
3929 5680 4.950205 TTTCGTCCTCTGGTTTACTCTT 57.050 40.909 0.00 0.00 0.00 2.85
4031 5877 6.049790 GCTAACTCCCACTAACCTATTTCTG 58.950 44.000 0.00 0.00 0.00 3.02
4146 5992 7.713507 CCTCAACATGCATGATAATTTCCATTT 59.286 33.333 32.75 9.19 0.00 2.32
4523 6377 7.649057 ACAAAACCAACTTAGCTGTAAATCTC 58.351 34.615 0.00 0.00 0.00 2.75
4867 6821 7.383029 GGACAATATGATTTGCATATGTTGGTG 59.617 37.037 4.29 0.00 46.84 4.17
5451 7419 5.632034 AAATACTCCCTCTGTCCCATAAC 57.368 43.478 0.00 0.00 0.00 1.89
5457 7425 3.973973 TCCCTCTGTCCCATAACATAAGG 59.026 47.826 0.00 0.00 34.27 2.69
5563 7531 4.641989 AGCAGTAATGGGTAATGAAGCAAG 59.358 41.667 0.00 0.00 28.85 4.01
5667 7637 7.289317 ACTCCCTCCGTATCAAAATATAAGACA 59.711 37.037 0.00 0.00 0.00 3.41
5807 7779 5.123186 TGGAACAGTTTCACTAGTTTGTGTG 59.877 40.000 0.00 0.00 38.90 3.82
5872 7859 0.037303 ATGCAGGGTGTCACTTGGAG 59.963 55.000 2.35 0.00 0.00 3.86
5894 7881 2.254546 TTGAGTTGAATCGTGCTGGT 57.745 45.000 0.00 0.00 0.00 4.00
5928 7915 7.275920 AGTTATCCCAGTAAGTTGAGCTATTG 58.724 38.462 0.00 0.00 0.00 1.90
6583 8914 4.530710 ACACAGGTAGAATCAGCGTTTA 57.469 40.909 0.00 0.00 0.00 2.01
6596 8927 5.277601 TCAGCGTTTATGTTCTTGCTTAC 57.722 39.130 0.00 0.00 0.00 2.34
6730 9144 3.281727 AGTTCAGTTTGTGAAGGCTCA 57.718 42.857 0.00 0.00 46.18 4.26
6731 9145 3.825328 AGTTCAGTTTGTGAAGGCTCAT 58.175 40.909 0.00 0.00 46.18 2.90
6732 9146 4.973168 AGTTCAGTTTGTGAAGGCTCATA 58.027 39.130 0.00 0.00 46.18 2.15
6733 9147 5.564550 AGTTCAGTTTGTGAAGGCTCATAT 58.435 37.500 0.00 0.00 46.18 1.78
6734 9148 5.413833 AGTTCAGTTTGTGAAGGCTCATATG 59.586 40.000 0.00 0.00 46.18 1.78
6736 9150 3.019564 AGTTTGTGAAGGCTCATATGGC 58.980 45.455 2.13 5.30 33.05 4.40
6737 9151 2.754552 GTTTGTGAAGGCTCATATGGCA 59.245 45.455 15.26 0.00 33.05 4.92
6738 9152 2.042686 TGTGAAGGCTCATATGGCAC 57.957 50.000 15.26 9.37 33.05 5.01
6909 9431 1.209019 TGCATTGGTGGCAGTGTTTTT 59.791 42.857 0.00 0.00 36.11 1.94
6910 9432 1.866601 GCATTGGTGGCAGTGTTTTTC 59.133 47.619 0.00 0.00 0.00 2.29
6915 9437 1.748493 GGTGGCAGTGTTTTTCTGTCA 59.252 47.619 0.00 0.00 43.75 3.58
6925 9447 8.816144 GCAGTGTTTTTCTGTCAAAATTTCATA 58.184 29.630 0.00 0.00 35.60 2.15
7157 9680 6.529477 GCAATCATAAAAAGGTCAAAGAGAGC 59.471 38.462 0.00 0.00 45.07 4.09
7327 9850 4.319177 ACCTAGCACTTGACAAGATGAAC 58.681 43.478 21.95 5.99 0.00 3.18
7328 9851 3.686726 CCTAGCACTTGACAAGATGAACC 59.313 47.826 21.95 4.54 0.00 3.62
7329 9852 2.146342 AGCACTTGACAAGATGAACCG 58.854 47.619 21.95 2.57 0.00 4.44
7330 9853 1.873591 GCACTTGACAAGATGAACCGT 59.126 47.619 21.95 0.00 0.00 4.83
7331 9854 2.349817 GCACTTGACAAGATGAACCGTG 60.350 50.000 21.95 8.64 0.00 4.94
7332 9855 3.130633 CACTTGACAAGATGAACCGTGA 58.869 45.455 21.95 0.00 0.00 4.35
7333 9856 3.185188 CACTTGACAAGATGAACCGTGAG 59.815 47.826 21.95 0.00 0.00 3.51
7334 9857 3.181465 ACTTGACAAGATGAACCGTGAGT 60.181 43.478 21.95 0.00 0.00 3.41
7335 9858 3.469008 TGACAAGATGAACCGTGAGTT 57.531 42.857 0.00 0.00 43.07 3.01
7336 9859 3.804036 TGACAAGATGAACCGTGAGTTT 58.196 40.909 0.00 0.00 39.40 2.66
7337 9860 4.951254 TGACAAGATGAACCGTGAGTTTA 58.049 39.130 0.00 0.00 39.40 2.01
7338 9861 5.547465 TGACAAGATGAACCGTGAGTTTAT 58.453 37.500 0.00 0.00 39.40 1.40
7339 9862 5.995282 TGACAAGATGAACCGTGAGTTTATT 59.005 36.000 0.00 0.00 39.40 1.40
7340 9863 6.073276 TGACAAGATGAACCGTGAGTTTATTG 60.073 38.462 0.00 0.00 39.40 1.90
7341 9864 5.763204 ACAAGATGAACCGTGAGTTTATTGT 59.237 36.000 0.00 0.00 39.40 2.71
7342 9865 6.262273 ACAAGATGAACCGTGAGTTTATTGTT 59.738 34.615 0.00 0.00 39.40 2.83
7343 9866 6.241207 AGATGAACCGTGAGTTTATTGTTG 57.759 37.500 0.00 0.00 39.40 3.33
7344 9867 5.763204 AGATGAACCGTGAGTTTATTGTTGT 59.237 36.000 0.00 0.00 39.40 3.32
7345 9868 6.932400 AGATGAACCGTGAGTTTATTGTTGTA 59.068 34.615 0.00 0.00 39.40 2.41
7346 9869 6.289745 TGAACCGTGAGTTTATTGTTGTAC 57.710 37.500 0.00 0.00 39.40 2.90
7347 9870 6.050432 TGAACCGTGAGTTTATTGTTGTACT 58.950 36.000 0.00 0.00 39.40 2.73
7348 9871 6.539464 TGAACCGTGAGTTTATTGTTGTACTT 59.461 34.615 0.00 0.00 39.40 2.24
7349 9872 6.295039 ACCGTGAGTTTATTGTTGTACTTG 57.705 37.500 0.00 0.00 0.00 3.16
7350 9873 5.144359 CCGTGAGTTTATTGTTGTACTTGC 58.856 41.667 0.00 0.00 0.00 4.01
7351 9874 5.049680 CCGTGAGTTTATTGTTGTACTTGCT 60.050 40.000 0.00 0.00 0.00 3.91
7352 9875 6.071463 CGTGAGTTTATTGTTGTACTTGCTC 58.929 40.000 0.00 0.00 0.00 4.26
7353 9876 6.073765 CGTGAGTTTATTGTTGTACTTGCTCT 60.074 38.462 0.00 0.00 0.00 4.09
7354 9877 7.518370 CGTGAGTTTATTGTTGTACTTGCTCTT 60.518 37.037 0.00 0.00 0.00 2.85
7355 9878 7.798982 GTGAGTTTATTGTTGTACTTGCTCTTC 59.201 37.037 0.00 0.00 0.00 2.87
7356 9879 7.715249 TGAGTTTATTGTTGTACTTGCTCTTCT 59.285 33.333 0.00 0.00 0.00 2.85
7357 9880 7.865707 AGTTTATTGTTGTACTTGCTCTTCTG 58.134 34.615 0.00 0.00 0.00 3.02
7358 9881 6.801539 TTATTGTTGTACTTGCTCTTCTGG 57.198 37.500 0.00 0.00 0.00 3.86
7359 9882 2.494059 TGTTGTACTTGCTCTTCTGGC 58.506 47.619 0.00 0.00 0.00 4.85
7440 9995 5.346822 GCAAATGAAGGCTGTCATAAAACTG 59.653 40.000 11.00 6.81 37.25 3.16
7583 10143 3.196469 TCTTTGGACTGTAGATGCTCCAG 59.804 47.826 0.00 0.00 34.26 3.86
7584 10144 1.489481 TGGACTGTAGATGCTCCAGG 58.511 55.000 0.00 0.00 0.00 4.45
7585 10145 1.007118 TGGACTGTAGATGCTCCAGGA 59.993 52.381 0.00 0.00 0.00 3.86
7586 10146 2.111384 GGACTGTAGATGCTCCAGGAA 58.889 52.381 0.00 0.00 0.00 3.36
7587 10147 2.102252 GGACTGTAGATGCTCCAGGAAG 59.898 54.545 0.00 0.00 0.00 3.46
7588 10148 3.027412 GACTGTAGATGCTCCAGGAAGA 58.973 50.000 0.00 0.00 0.00 2.87
7589 10149 2.763448 ACTGTAGATGCTCCAGGAAGAC 59.237 50.000 0.00 0.00 0.00 3.01
7590 10150 3.030291 CTGTAGATGCTCCAGGAAGACT 58.970 50.000 0.00 0.00 0.00 3.24
7629 10189 3.858135 AGTTCTCCTGGGTCTGTTAGAA 58.142 45.455 0.00 0.00 0.00 2.10
7682 10399 7.559590 AAACATGCTCTGATATTGAAGGTAC 57.440 36.000 0.00 0.00 0.00 3.34
7684 10401 6.520272 ACATGCTCTGATATTGAAGGTACTC 58.480 40.000 0.00 0.00 38.49 2.59
7685 10402 5.537300 TGCTCTGATATTGAAGGTACTCC 57.463 43.478 0.00 0.00 38.49 3.85
7686 10403 4.345257 TGCTCTGATATTGAAGGTACTCCC 59.655 45.833 0.00 0.00 38.49 4.30
7688 10405 5.279256 GCTCTGATATTGAAGGTACTCCCTC 60.279 48.000 0.00 0.00 45.47 4.30
7689 10406 5.148502 TCTGATATTGAAGGTACTCCCTCC 58.851 45.833 0.00 0.00 45.47 4.30
7690 10407 3.895656 TGATATTGAAGGTACTCCCTCCG 59.104 47.826 0.00 0.00 45.47 4.63
7691 10408 2.249309 ATTGAAGGTACTCCCTCCGT 57.751 50.000 0.00 0.00 45.47 4.69
7692 10409 1.553706 TTGAAGGTACTCCCTCCGTC 58.446 55.000 0.00 0.00 45.47 4.79
7693 10410 0.324091 TGAAGGTACTCCCTCCGTCC 60.324 60.000 0.00 0.00 45.47 4.79
7694 10411 1.379576 AAGGTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 45.47 4.79
7695 10412 2.044551 GGTACTCCCTCCGTCCGT 60.045 66.667 0.00 0.00 0.00 4.69
7696 10413 2.413142 GGTACTCCCTCCGTCCGTG 61.413 68.421 0.00 0.00 0.00 4.94
7697 10414 1.377725 GTACTCCCTCCGTCCGTGA 60.378 63.158 0.00 0.00 0.00 4.35
7698 10415 0.962356 GTACTCCCTCCGTCCGTGAA 60.962 60.000 0.00 0.00 0.00 3.18
7699 10416 0.033796 TACTCCCTCCGTCCGTGAAT 60.034 55.000 0.00 0.00 0.00 2.57
7700 10417 0.033796 ACTCCCTCCGTCCGTGAATA 60.034 55.000 0.00 0.00 0.00 1.75
7701 10418 1.108776 CTCCCTCCGTCCGTGAATAA 58.891 55.000 0.00 0.00 0.00 1.40
7702 10419 1.067212 CTCCCTCCGTCCGTGAATAAG 59.933 57.143 0.00 0.00 0.00 1.73
7703 10420 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.000 0.00 0.00 0.00 2.24
7704 10421 1.470979 CCCTCCGTCCGTGAATAAGTG 60.471 57.143 0.00 0.00 0.00 3.16
7705 10422 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
7706 10423 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
7707 10424 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
7708 10425 2.819019 TCCGTCCGTGAATAAGTGTACA 59.181 45.455 0.00 0.00 0.00 2.90
7709 10426 3.255395 TCCGTCCGTGAATAAGTGTACAA 59.745 43.478 0.00 0.00 0.00 2.41
7710 10427 4.082081 TCCGTCCGTGAATAAGTGTACAAT 60.082 41.667 0.00 0.00 0.00 2.71
7711 10428 4.266976 CCGTCCGTGAATAAGTGTACAATC 59.733 45.833 0.00 0.00 0.00 2.67
7712 10429 5.100259 CGTCCGTGAATAAGTGTACAATCT 58.900 41.667 0.00 0.00 0.00 2.40
7713 10430 6.260377 CGTCCGTGAATAAGTGTACAATCTA 58.740 40.000 0.00 0.00 0.00 1.98
7714 10431 6.414109 CGTCCGTGAATAAGTGTACAATCTAG 59.586 42.308 0.00 0.00 0.00 2.43
7715 10432 6.198591 GTCCGTGAATAAGTGTACAATCTAGC 59.801 42.308 0.00 0.00 0.00 3.42
7716 10433 6.096423 TCCGTGAATAAGTGTACAATCTAGCT 59.904 38.462 0.00 0.00 0.00 3.32
7717 10434 6.757010 CCGTGAATAAGTGTACAATCTAGCTT 59.243 38.462 0.00 0.00 0.00 3.74
7718 10435 7.277981 CCGTGAATAAGTGTACAATCTAGCTTT 59.722 37.037 0.00 0.00 0.00 3.51
7719 10436 8.656849 CGTGAATAAGTGTACAATCTAGCTTTT 58.343 33.333 0.00 0.00 0.00 2.27
7720 10437 9.760660 GTGAATAAGTGTACAATCTAGCTTTTG 57.239 33.333 0.00 0.00 0.00 2.44
7721 10438 9.502091 TGAATAAGTGTACAATCTAGCTTTTGT 57.498 29.630 0.00 12.26 39.32 2.83
7724 10441 9.726438 ATAAGTGTACAATCTAGCTTTTGTTCT 57.274 29.630 12.70 8.07 37.29 3.01
7726 10443 9.555727 AAGTGTACAATCTAGCTTTTGTTCTAA 57.444 29.630 12.70 0.00 37.29 2.10
7727 10444 9.726438 AGTGTACAATCTAGCTTTTGTTCTAAT 57.274 29.630 12.70 0.87 37.29 1.73
7820 10537 9.965824 ATTCTCAAACTACATTTCAAAACGAAT 57.034 25.926 0.00 0.00 32.32 3.34
7821 10538 9.445786 TTCTCAAACTACATTTCAAAACGAATC 57.554 29.630 0.00 0.00 32.32 2.52
7822 10539 8.836413 TCTCAAACTACATTTCAAAACGAATCT 58.164 29.630 0.00 0.00 32.32 2.40
7825 10542 9.878599 CAAACTACATTTCAAAACGAATCTAGT 57.121 29.630 0.00 0.00 32.32 2.57
7826 10543 9.878599 AAACTACATTTCAAAACGAATCTAGTG 57.121 29.630 0.00 0.00 32.32 2.74
7827 10544 8.827177 ACTACATTTCAAAACGAATCTAGTGA 57.173 30.769 0.00 0.00 32.32 3.41
7828 10545 9.436957 ACTACATTTCAAAACGAATCTAGTGAT 57.563 29.630 0.00 0.00 32.32 3.06
7831 10548 9.436957 ACATTTCAAAACGAATCTAGTGATACT 57.563 29.630 0.00 0.00 32.32 2.12
7839 10556 9.886132 AAACGAATCTAGTGATACTAATTTGGT 57.114 29.630 0.00 0.00 29.00 3.67
7840 10557 8.873215 ACGAATCTAGTGATACTAATTTGGTG 57.127 34.615 0.00 0.00 29.00 4.17
7841 10558 8.475639 ACGAATCTAGTGATACTAATTTGGTGT 58.524 33.333 0.00 0.00 29.00 4.16
7842 10559 8.969267 CGAATCTAGTGATACTAATTTGGTGTC 58.031 37.037 3.21 3.21 29.00 3.67
7843 10560 9.817809 GAATCTAGTGATACTAATTTGGTGTCA 57.182 33.333 8.00 8.00 33.62 3.58
7850 10567 9.450807 GTGATACTAATTTGGTGTCATAAATGC 57.549 33.333 13.81 0.00 37.22 3.56
7851 10568 9.407380 TGATACTAATTTGGTGTCATAAATGCT 57.593 29.630 8.00 0.00 31.69 3.79
7858 10575 9.777297 AATTTGGTGTCATAAATGCTTTTACTT 57.223 25.926 6.92 0.00 30.33 2.24
7859 10576 9.777297 ATTTGGTGTCATAAATGCTTTTACTTT 57.223 25.926 6.92 0.00 30.33 2.66
7860 10577 9.606631 TTTGGTGTCATAAATGCTTTTACTTTT 57.393 25.926 6.92 0.00 30.33 2.27
7861 10578 9.606631 TTGGTGTCATAAATGCTTTTACTTTTT 57.393 25.926 6.92 0.00 30.33 1.94
7882 10599 7.712204 TTTTTCTAGAAAGGTGGTCAAAGTT 57.288 32.000 17.05 0.00 0.00 2.66
7883 10600 7.712204 TTTTCTAGAAAGGTGGTCAAAGTTT 57.288 32.000 17.05 0.00 0.00 2.66
7884 10601 7.712204 TTTCTAGAAAGGTGGTCAAAGTTTT 57.288 32.000 13.99 0.00 0.00 2.43
7885 10602 8.810990 TTTCTAGAAAGGTGGTCAAAGTTTTA 57.189 30.769 13.99 0.00 0.00 1.52
7886 10603 8.810990 TTCTAGAAAGGTGGTCAAAGTTTTAA 57.189 30.769 1.68 0.00 0.00 1.52
7887 10604 8.810990 TCTAGAAAGGTGGTCAAAGTTTTAAA 57.189 30.769 0.00 0.00 0.00 1.52
7888 10605 9.245481 TCTAGAAAGGTGGTCAAAGTTTTAAAA 57.755 29.630 0.00 0.00 0.00 1.52
7889 10606 9.297586 CTAGAAAGGTGGTCAAAGTTTTAAAAC 57.702 33.333 21.06 21.06 39.17 2.43
7914 10631 8.316640 CTTTGACTTAAGACAAAGCTAGATGT 57.683 34.615 32.33 1.43 45.24 3.06
7915 10632 9.424319 CTTTGACTTAAGACAAAGCTAGATGTA 57.576 33.333 32.33 12.02 45.24 2.29
7916 10633 8.758633 TTGACTTAAGACAAAGCTAGATGTAC 57.241 34.615 16.33 0.00 0.00 2.90
7917 10634 7.892609 TGACTTAAGACAAAGCTAGATGTACA 58.107 34.615 10.09 0.00 0.00 2.90
7918 10635 7.813148 TGACTTAAGACAAAGCTAGATGTACAC 59.187 37.037 10.09 0.00 0.00 2.90
7919 10636 7.897864 ACTTAAGACAAAGCTAGATGTACACT 58.102 34.615 10.09 0.13 0.00 3.55
7920 10637 8.368668 ACTTAAGACAAAGCTAGATGTACACTT 58.631 33.333 10.09 0.00 0.00 3.16
7921 10638 9.856488 CTTAAGACAAAGCTAGATGTACACTTA 57.144 33.333 0.00 0.00 0.00 2.24
7924 10641 8.934507 AGACAAAGCTAGATGTACACTTATTC 57.065 34.615 0.00 0.00 0.00 1.75
7925 10642 8.531982 AGACAAAGCTAGATGTACACTTATTCA 58.468 33.333 0.00 0.00 0.00 2.57
7926 10643 8.480643 ACAAAGCTAGATGTACACTTATTCAC 57.519 34.615 0.00 0.00 0.00 3.18
7927 10644 7.275779 ACAAAGCTAGATGTACACTTATTCACG 59.724 37.037 0.00 0.00 0.00 4.35
7928 10645 5.833082 AGCTAGATGTACACTTATTCACGG 58.167 41.667 0.00 0.00 0.00 4.94
7929 10646 5.593095 AGCTAGATGTACACTTATTCACGGA 59.407 40.000 0.00 0.00 0.00 4.69
7930 10647 5.686397 GCTAGATGTACACTTATTCACGGAC 59.314 44.000 0.00 0.00 0.00 4.79
7931 10648 4.669318 AGATGTACACTTATTCACGGACG 58.331 43.478 0.00 0.00 0.00 4.79
7932 10649 3.220507 TGTACACTTATTCACGGACGG 57.779 47.619 0.00 0.00 0.00 4.79
7933 10650 2.819019 TGTACACTTATTCACGGACGGA 59.181 45.455 0.00 0.00 0.00 4.69
7934 10651 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
7935 10652 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
7936 10653 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
7937 10654 1.108776 CTTATTCACGGACGGAGGGA 58.891 55.000 0.00 0.00 0.00 4.20
7938 10655 1.067212 CTTATTCACGGACGGAGGGAG 59.933 57.143 0.00 0.00 0.00 4.30
7939 10656 0.033796 TATTCACGGACGGAGGGAGT 60.034 55.000 0.00 0.00 0.00 3.85
7940 10657 0.033796 ATTCACGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 0.00 2.59
7951 10668 4.543689 ACGGAGGGAGTATAGAACAATCA 58.456 43.478 0.00 0.00 0.00 2.57
7959 10676 9.225682 AGGGAGTATAGAACAATCAAGGAATAA 57.774 33.333 0.00 0.00 0.00 1.40
7972 10689 6.313519 TCAAGGAATAACTTGCCTGTATCT 57.686 37.500 0.00 0.00 45.72 1.98
8014 10731 2.943033 GCCTCCTAAATACGTGTGCATT 59.057 45.455 0.00 0.00 0.00 3.56
8120 10837 0.398318 AAGTCAGCTTCAGTCCCCAC 59.602 55.000 0.00 0.00 0.00 4.61
8179 10896 5.164954 GCATGACCTATTAGTAGCTAGCAC 58.835 45.833 18.83 12.89 0.00 4.40
8195 10912 4.513318 GCTAGCACCTTGAAGTCATATTCC 59.487 45.833 10.63 0.00 0.00 3.01
8235 10952 3.004944 GCCCGTTTCATGGTTCAGTTTAA 59.995 43.478 0.00 0.00 0.00 1.52
8261 10978 6.108015 CAGCAATTAGGCCAATAAAATGTGT 58.892 36.000 5.01 0.00 0.00 3.72
8263 10980 5.220643 GCAATTAGGCCAATAAAATGTGTGC 60.221 40.000 5.01 3.68 0.00 4.57
8274 10992 6.816134 ATAAAATGTGTGCTATGTGTCACA 57.184 33.333 8.40 8.40 43.30 3.58
8324 11042 0.462375 TTGTATCGCATAGCCCACGT 59.538 50.000 0.00 0.00 0.00 4.49
8330 11048 3.455990 TCGCATAGCCCACGTTTTATA 57.544 42.857 0.00 0.00 0.00 0.98
8331 11049 3.997762 TCGCATAGCCCACGTTTTATAT 58.002 40.909 0.00 0.00 0.00 0.86
8332 11050 4.382291 TCGCATAGCCCACGTTTTATATT 58.618 39.130 0.00 0.00 0.00 1.28
8333 11051 4.817464 TCGCATAGCCCACGTTTTATATTT 59.183 37.500 0.00 0.00 0.00 1.40
8371 11089 9.255304 GGTCAAACTTAAATCTTTAATTGCACA 57.745 29.630 0.00 0.00 32.69 4.57
8388 11106 4.096732 GCACAGGCACCTTACATAAAAG 57.903 45.455 0.00 0.00 40.72 2.27
8404 11123 3.629142 AAAAGGAGAGGGGACATTACG 57.371 47.619 0.00 0.00 0.00 3.18
8406 11125 1.777941 AGGAGAGGGGACATTACGTC 58.222 55.000 0.00 0.00 44.57 4.34
8529 11248 9.438228 GCACTCTTCTTTAAGATTAAGTAGGTT 57.562 33.333 0.00 0.00 40.92 3.50
8690 11409 5.163591 TGTCGAGTACATATTTCATGGTCGT 60.164 40.000 0.00 0.00 31.43 4.34
8777 11497 8.755696 TGTGCCTTTGTCAATAATACAAAATC 57.244 30.769 0.00 0.00 43.98 2.17
8780 11500 7.753132 TGCCTTTGTCAATAATACAAAATCGTC 59.247 33.333 0.00 0.00 43.98 4.20
8795 11515 4.483476 AATCGTCGAACTTTTCCTTTGG 57.517 40.909 0.00 0.00 0.00 3.28
8862 11582 6.718454 ACAAGACATTCATGAGATTTGACCTT 59.282 34.615 0.00 1.12 0.00 3.50
8926 11646 5.351465 CGCACTGTAACCATCATAGTTTTCT 59.649 40.000 0.00 0.00 0.00 2.52
8977 11697 5.012561 GGGTATCATTTCTCTATGTGAGCCT 59.987 44.000 0.00 0.00 42.38 4.58
9008 11728 6.893554 TGTTGTATACTACTACATGAGTGGGT 59.106 38.462 16.61 5.58 40.89 4.51
9031 11751 4.406648 TGTGCCACCTAGATGAGTAATG 57.593 45.455 0.00 0.00 0.00 1.90
9146 11917 1.536766 TGATTTGCGAAGGTTCAGCTG 59.463 47.619 7.63 7.63 0.00 4.24
9196 11971 1.220529 CTTGTGTGCGACAGTGTGAT 58.779 50.000 0.00 0.00 35.44 3.06
9197 11972 0.936600 TTGTGTGCGACAGTGTGATG 59.063 50.000 0.00 0.00 35.44 3.07
9198 11973 1.205064 GTGTGCGACAGTGTGATGC 59.795 57.895 0.00 2.31 0.00 3.91
9199 11974 1.069596 TGTGCGACAGTGTGATGCT 59.930 52.632 0.00 0.00 0.00 3.79
9200 11975 0.532640 TGTGCGACAGTGTGATGCTT 60.533 50.000 0.00 0.00 0.00 3.91
9201 11976 0.588252 GTGCGACAGTGTGATGCTTT 59.412 50.000 0.00 0.00 0.00 3.51
9202 11977 0.587768 TGCGACAGTGTGATGCTTTG 59.412 50.000 0.00 0.00 0.00 2.77
9203 11978 0.588252 GCGACAGTGTGATGCTTTGT 59.412 50.000 0.00 0.00 0.00 2.83
9204 11979 1.002468 GCGACAGTGTGATGCTTTGTT 60.002 47.619 0.00 0.00 0.00 2.83
9205 11980 2.908634 CGACAGTGTGATGCTTTGTTC 58.091 47.619 0.00 0.00 0.00 3.18
9258 12043 6.260936 GCTGTGTTTGGTCTAGCATTATGTAT 59.739 38.462 0.00 0.00 34.64 2.29
9259 12044 7.441157 GCTGTGTTTGGTCTAGCATTATGTATA 59.559 37.037 0.00 0.00 34.64 1.47
9282 12067 6.942532 AGTCTTAACAAGCATCTTTGTTCA 57.057 33.333 7.33 0.00 45.49 3.18
9283 12068 6.963796 AGTCTTAACAAGCATCTTTGTTCAG 58.036 36.000 7.33 6.88 45.49 3.02
9284 12069 5.626955 GTCTTAACAAGCATCTTTGTTCAGC 59.373 40.000 7.33 1.29 45.49 4.26
9286 12071 4.660789 AACAAGCATCTTTGTTCAGCTT 57.339 36.364 0.00 0.00 45.49 3.74
9287 12072 4.660789 ACAAGCATCTTTGTTCAGCTTT 57.339 36.364 0.00 0.00 43.06 3.51
9289 12074 4.142093 ACAAGCATCTTTGTTCAGCTTTGT 60.142 37.500 0.00 0.00 43.06 2.83
9290 12075 4.660789 AGCATCTTTGTTCAGCTTTGTT 57.339 36.364 0.00 0.00 29.98 2.83
9291 12076 5.014808 AGCATCTTTGTTCAGCTTTGTTT 57.985 34.783 0.00 0.00 29.98 2.83
9305 12090 4.327357 AGCTTTGTTTCATATGTCGTCTCG 59.673 41.667 1.90 0.00 0.00 4.04
9325 12110 2.226437 CGTTGTTTCATAAGTGCTGGCT 59.774 45.455 0.00 0.00 0.00 4.75
9332 12117 1.926511 ATAAGTGCTGGCTTGCGTGC 61.927 55.000 0.00 2.50 35.36 5.34
9358 12143 0.516877 TCAAACGCGATGGCTTCAAG 59.483 50.000 15.93 0.00 36.88 3.02
9404 12189 3.110358 CGTTTGCATGCGAATCATCATT 58.890 40.909 22.96 0.00 31.79 2.57
9409 12194 4.939271 TGCATGCGAATCATCATTTCAAT 58.061 34.783 14.09 0.00 31.79 2.57
9411 12196 5.233263 TGCATGCGAATCATCATTTCAATTG 59.767 36.000 14.09 0.00 31.79 2.32
9412 12197 5.666203 CATGCGAATCATCATTTCAATTGC 58.334 37.500 0.00 0.00 31.79 3.56
9414 12199 4.801516 TGCGAATCATCATTTCAATTGCTG 59.198 37.500 0.00 0.00 0.00 4.41
9415 12200 4.208460 GCGAATCATCATTTCAATTGCTGG 59.792 41.667 0.00 0.00 0.00 4.85
9444 12257 6.541934 TCCATCATCTGATACCTCATCATC 57.458 41.667 0.00 0.00 42.82 2.92
9470 12287 3.262420 AGCATAGACACCAAACGCTAAG 58.738 45.455 0.00 0.00 0.00 2.18
9481 12298 2.200373 AACGCTAAGCCCAATCACTT 57.800 45.000 0.00 0.00 0.00 3.16
9493 12310 2.002586 CAATCACTTACTCCCTGCACG 58.997 52.381 0.00 0.00 0.00 5.34
9531 12348 0.899019 GGTTCAGGTGAGGAGAGGAC 59.101 60.000 0.00 0.00 0.00 3.85
9571 12388 2.281761 CTGCGCCCCTGTCTTTGT 60.282 61.111 4.18 0.00 0.00 2.83
9628 12445 3.403038 CCTATACTACATGGCAGGTTGC 58.597 50.000 11.12 0.00 44.08 4.17
9736 12573 5.123820 CGCTTTAGATTTGGACCAGATCAAA 59.876 40.000 23.21 18.65 37.29 2.69
9746 12583 3.339141 GACCAGATCAAAGACTTGGGAC 58.661 50.000 0.00 0.00 33.01 4.46
9752 12589 4.226168 AGATCAAAGACTTGGGACCTAAGG 59.774 45.833 20.56 3.83 33.01 2.69
9753 12590 3.323775 TCAAAGACTTGGGACCTAAGGT 58.676 45.455 20.56 7.36 33.88 3.50
9754 12591 4.495565 TCAAAGACTTGGGACCTAAGGTA 58.504 43.478 20.56 0.00 32.28 3.08
9755 12592 4.909088 TCAAAGACTTGGGACCTAAGGTAA 59.091 41.667 20.56 0.00 32.28 2.85
9798 12637 5.366482 ACAAAAGGCAGGGTAACAAAAAT 57.634 34.783 0.00 0.00 39.74 1.82
9800 12639 6.890293 ACAAAAGGCAGGGTAACAAAAATAA 58.110 32.000 0.00 0.00 39.74 1.40
9808 12647 6.584942 GCAGGGTAACAAAAATAACACTTAGC 59.415 38.462 0.00 0.00 39.74 3.09
9809 12648 7.523216 GCAGGGTAACAAAAATAACACTTAGCT 60.523 37.037 0.00 0.00 39.74 3.32
9810 12649 9.005777 CAGGGTAACAAAAATAACACTTAGCTA 57.994 33.333 0.00 0.00 39.74 3.32
9811 12650 9.749340 AGGGTAACAAAAATAACACTTAGCTAT 57.251 29.630 0.00 0.00 39.74 2.97
9812 12651 9.999009 GGGTAACAAAAATAACACTTAGCTATC 57.001 33.333 0.00 0.00 39.74 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 333 9.376075 TCAAAAAGTGTTAATCTTGCATTTGAA 57.624 25.926 13.24 4.84 31.86 2.69
224 347 8.687242 TGTTGACCATGTATTCAAAAAGTGTTA 58.313 29.630 3.85 0.00 33.58 2.41
546 1788 1.200020 CCACAGCCTCGGACATTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
638 1882 0.693049 GTATGGGGCCCCTATGTCTG 59.307 60.000 40.66 0.00 36.94 3.51
650 1894 2.563179 CCTAACCTCATCTCGTATGGGG 59.437 54.545 15.21 15.21 45.14 4.96
856 2100 5.009610 TGGATTTGCTCGGGATTAATAAAGC 59.990 40.000 0.00 0.00 0.00 3.51
959 2203 3.360340 GCGGCTGCTTCTGCTTGT 61.360 61.111 11.21 0.00 40.48 3.16
1074 2318 1.925285 ATGCCCTGCGGATTTCCTCA 61.925 55.000 0.00 0.00 0.00 3.86
1340 2584 0.109342 CCAGTGGAGACCAACTGCTT 59.891 55.000 1.68 0.00 37.83 3.91
1490 2809 3.549299 GCATATAGCCACAGACATTGC 57.451 47.619 0.00 0.00 37.23 3.56
1518 2837 7.178573 TGATGAAGGAATAAACCCATACAACA 58.821 34.615 0.00 0.00 0.00 3.33
1521 2840 7.353525 ACATGATGAAGGAATAAACCCATACA 58.646 34.615 0.00 0.00 0.00 2.29
1604 2923 2.639839 AGTTGACTCAGCATTACCCAGT 59.360 45.455 0.00 0.00 0.00 4.00
1720 3039 5.704515 AGCTCTCCAATATCCGATCAAAATG 59.295 40.000 0.00 0.00 0.00 2.32
1771 3090 6.037610 GGTAACACCATGACAATTTGCAAAAA 59.962 34.615 17.19 0.00 38.42 1.94
1772 3091 5.525378 GGTAACACCATGACAATTTGCAAAA 59.475 36.000 17.19 0.00 38.42 2.44
1773 3092 5.053145 GGTAACACCATGACAATTTGCAAA 58.947 37.500 15.44 15.44 38.42 3.68
1774 3093 4.343526 AGGTAACACCATGACAATTTGCAA 59.656 37.500 0.00 0.00 41.95 4.08
1775 3094 3.894427 AGGTAACACCATGACAATTTGCA 59.106 39.130 0.00 0.00 41.95 4.08
1776 3095 4.218417 AGAGGTAACACCATGACAATTTGC 59.782 41.667 0.00 0.00 41.95 3.68
1777 3096 5.964958 AGAGGTAACACCATGACAATTTG 57.035 39.130 0.00 0.00 41.95 2.32
1778 3097 6.015434 GGAAAGAGGTAACACCATGACAATTT 60.015 38.462 0.00 0.00 41.95 1.82
1779 3098 5.476945 GGAAAGAGGTAACACCATGACAATT 59.523 40.000 0.00 0.00 41.95 2.32
1780 3099 5.010282 GGAAAGAGGTAACACCATGACAAT 58.990 41.667 0.00 0.00 41.95 2.71
1781 3100 4.394729 GGAAAGAGGTAACACCATGACAA 58.605 43.478 0.00 0.00 41.95 3.18
1827 3146 9.639563 TGGGTCTGATCAAAATATAATTAGCAA 57.360 29.630 0.00 0.00 0.00 3.91
1891 3210 6.522054 TCTACTTTCCATTCGTCAAAGAACT 58.478 36.000 0.00 0.00 32.44 3.01
1985 3502 4.399303 GTGCAAGCCTAACTACCATCAAAT 59.601 41.667 0.00 0.00 0.00 2.32
1986 3503 3.756434 GTGCAAGCCTAACTACCATCAAA 59.244 43.478 0.00 0.00 0.00 2.69
1987 3504 3.009033 AGTGCAAGCCTAACTACCATCAA 59.991 43.478 0.00 0.00 0.00 2.57
1988 3505 2.571653 AGTGCAAGCCTAACTACCATCA 59.428 45.455 0.00 0.00 0.00 3.07
1991 3508 2.105821 ACAAGTGCAAGCCTAACTACCA 59.894 45.455 0.00 0.00 0.00 3.25
2204 3721 7.205297 CAGAATTTAAACCTTCCATGCCATAG 58.795 38.462 0.00 0.00 0.00 2.23
2459 3976 8.502738 TGGCTTCTAAATTATGATAGGAACCTT 58.497 33.333 0.00 0.00 0.00 3.50
3040 4777 2.032620 ACCAGATCCAGTCGTACCATC 58.967 52.381 0.00 0.00 0.00 3.51
3079 4816 0.689055 ACAGAAGACAGCTGATGGCA 59.311 50.000 23.35 0.00 40.68 4.92
3339 5076 3.033184 CAAGGGGACATACATTGCCAAT 58.967 45.455 0.00 0.00 0.00 3.16
3477 5214 7.342769 AGATCATGCACATGTTGTAATCATT 57.657 32.000 10.27 0.00 39.72 2.57
3516 5253 2.146342 ACCGTTTCTTCAGCATCTGTG 58.854 47.619 0.00 0.00 32.61 3.66
3517 5254 2.550830 ACCGTTTCTTCAGCATCTGT 57.449 45.000 0.00 0.00 32.61 3.41
3518 5255 3.558505 CAAACCGTTTCTTCAGCATCTG 58.441 45.455 0.00 0.00 0.00 2.90
3745 5496 5.046591 AGTTCTAGGTTATGCACAGCTGTAA 60.047 40.000 21.20 11.66 0.00 2.41
3746 5497 4.466370 AGTTCTAGGTTATGCACAGCTGTA 59.534 41.667 21.20 5.19 0.00 2.74
3747 5498 3.261897 AGTTCTAGGTTATGCACAGCTGT 59.738 43.478 15.25 15.25 0.00 4.40
3748 5499 3.866651 AGTTCTAGGTTATGCACAGCTG 58.133 45.455 13.48 13.48 0.00 4.24
3749 5500 4.256920 CAAGTTCTAGGTTATGCACAGCT 58.743 43.478 4.91 4.91 0.00 4.24
3750 5501 4.003648 ACAAGTTCTAGGTTATGCACAGC 58.996 43.478 0.00 0.00 0.00 4.40
3751 5502 4.393062 CCACAAGTTCTAGGTTATGCACAG 59.607 45.833 0.00 0.00 0.00 3.66
3752 5503 4.323417 CCACAAGTTCTAGGTTATGCACA 58.677 43.478 0.00 0.00 0.00 4.57
3753 5504 3.127030 GCCACAAGTTCTAGGTTATGCAC 59.873 47.826 0.00 0.00 0.00 4.57
3754 5505 3.009033 AGCCACAAGTTCTAGGTTATGCA 59.991 43.478 0.00 0.00 0.00 3.96
3755 5506 3.610911 AGCCACAAGTTCTAGGTTATGC 58.389 45.455 0.00 0.00 0.00 3.14
3756 5507 6.238484 GCATAAGCCACAAGTTCTAGGTTATG 60.238 42.308 16.11 16.11 33.38 1.90
3757 5508 5.823045 GCATAAGCCACAAGTTCTAGGTTAT 59.177 40.000 0.00 0.00 33.58 1.89
3758 5509 5.183228 GCATAAGCCACAAGTTCTAGGTTA 58.817 41.667 0.00 0.00 33.58 2.85
3788 5539 1.002069 TCTGGGCATGGACTGGAAAT 58.998 50.000 0.00 0.00 0.00 2.17
3929 5680 0.622136 ATGCCAAGATGCCTCACTGA 59.378 50.000 0.00 0.00 0.00 3.41
4867 6821 5.830900 GTTCATGAACTCAGTACAGTCAC 57.169 43.478 27.66 0.13 38.25 3.67
4902 6856 5.458041 AGTGGTGAAATGGTGAAATGAAG 57.542 39.130 0.00 0.00 0.00 3.02
5101 7055 4.038042 TGGCCAGATAGAAGTAAGATCACG 59.962 45.833 0.00 0.00 0.00 4.35
5153 7107 9.357652 GTTACAAACTCGTATACCAGTTTATCA 57.642 33.333 22.87 11.70 40.19 2.15
5161 7115 8.362639 AGAAAGAAGTTACAAACTCGTATACCA 58.637 33.333 0.00 0.00 41.91 3.25
5441 7409 1.841277 ACGCCCTTATGTTATGGGACA 59.159 47.619 9.14 0.00 43.93 4.02
5451 7419 3.370978 CACTAGTGTCAAACGCCCTTATG 59.629 47.826 15.06 0.00 0.00 1.90
5457 7425 3.022607 ACTACACTAGTGTCAAACGCC 57.977 47.619 31.11 0.00 43.74 5.68
5563 7531 2.095567 ACAATGAACATGCAAGAGTCGC 60.096 45.455 0.00 0.00 0.00 5.19
5807 7779 2.519002 TAACATGCAACACGAATCGC 57.481 45.000 1.15 0.00 0.00 4.58
5872 7859 3.189287 ACCAGCACGATTCAACTCAAATC 59.811 43.478 0.00 0.00 0.00 2.17
5894 7881 9.280174 CAACTTACTGGGATAACTAACTTTTGA 57.720 33.333 0.00 0.00 0.00 2.69
5928 7915 0.747283 CAGGCAGGATTCAGAGGTGC 60.747 60.000 0.00 0.00 0.00 5.01
6148 8472 2.247635 AGACTGCCTTATACTCCCTCCA 59.752 50.000 0.00 0.00 0.00 3.86
6583 8914 3.000727 GCTGGTACGTAAGCAAGAACAT 58.999 45.455 13.20 0.00 45.62 2.71
6596 8927 5.459107 GTGATGAAGTACATAAGCTGGTACG 59.541 44.000 14.33 0.00 43.50 3.67
6730 9144 3.023832 GCTAACCCAAGTTGTGCCATAT 58.976 45.455 1.45 0.00 36.68 1.78
6731 9145 2.442413 GCTAACCCAAGTTGTGCCATA 58.558 47.619 1.45 0.00 36.68 2.74
6732 9146 1.256812 GCTAACCCAAGTTGTGCCAT 58.743 50.000 1.45 0.00 36.68 4.40
6733 9147 0.825840 GGCTAACCCAAGTTGTGCCA 60.826 55.000 15.22 0.00 46.85 4.92
6734 9148 1.964448 GGCTAACCCAAGTTGTGCC 59.036 57.895 1.45 4.07 44.10 5.01
6964 9486 9.378551 GAAGTATACATGACACAGGAAAATACA 57.621 33.333 5.50 0.00 0.00 2.29
7157 9680 9.978044 TTATCATCTATCTCACTCAATTGACTG 57.022 33.333 3.38 6.40 0.00 3.51
7327 9850 5.049680 AGCAAGTACAACAATAAACTCACGG 60.050 40.000 0.00 0.00 0.00 4.94
7328 9851 5.985781 AGCAAGTACAACAATAAACTCACG 58.014 37.500 0.00 0.00 0.00 4.35
7329 9852 7.190920 AGAGCAAGTACAACAATAAACTCAC 57.809 36.000 0.00 0.00 0.00 3.51
7330 9853 7.715249 AGAAGAGCAAGTACAACAATAAACTCA 59.285 33.333 0.00 0.00 0.00 3.41
7331 9854 8.012241 CAGAAGAGCAAGTACAACAATAAACTC 58.988 37.037 0.00 0.00 0.00 3.01
7332 9855 7.041098 CCAGAAGAGCAAGTACAACAATAAACT 60.041 37.037 0.00 0.00 0.00 2.66
7333 9856 7.078228 CCAGAAGAGCAAGTACAACAATAAAC 58.922 38.462 0.00 0.00 0.00 2.01
7334 9857 6.293955 GCCAGAAGAGCAAGTACAACAATAAA 60.294 38.462 0.00 0.00 0.00 1.40
7335 9858 5.181245 GCCAGAAGAGCAAGTACAACAATAA 59.819 40.000 0.00 0.00 0.00 1.40
7336 9859 4.695455 GCCAGAAGAGCAAGTACAACAATA 59.305 41.667 0.00 0.00 0.00 1.90
7337 9860 3.503748 GCCAGAAGAGCAAGTACAACAAT 59.496 43.478 0.00 0.00 0.00 2.71
7338 9861 2.878406 GCCAGAAGAGCAAGTACAACAA 59.122 45.455 0.00 0.00 0.00 2.83
7339 9862 2.104792 AGCCAGAAGAGCAAGTACAACA 59.895 45.455 0.00 0.00 0.00 3.33
7340 9863 2.772287 AGCCAGAAGAGCAAGTACAAC 58.228 47.619 0.00 0.00 0.00 3.32
7341 9864 3.141398 CAAGCCAGAAGAGCAAGTACAA 58.859 45.455 0.00 0.00 0.00 2.41
7342 9865 2.104792 ACAAGCCAGAAGAGCAAGTACA 59.895 45.455 0.00 0.00 0.00 2.90
7343 9866 2.481952 CACAAGCCAGAAGAGCAAGTAC 59.518 50.000 0.00 0.00 0.00 2.73
7344 9867 2.104792 ACACAAGCCAGAAGAGCAAGTA 59.895 45.455 0.00 0.00 0.00 2.24
7345 9868 1.133976 ACACAAGCCAGAAGAGCAAGT 60.134 47.619 0.00 0.00 0.00 3.16
7346 9869 1.602311 ACACAAGCCAGAAGAGCAAG 58.398 50.000 0.00 0.00 0.00 4.01
7347 9870 2.057137 AACACAAGCCAGAAGAGCAA 57.943 45.000 0.00 0.00 0.00 3.91
7348 9871 1.949525 GAAACACAAGCCAGAAGAGCA 59.050 47.619 0.00 0.00 0.00 4.26
7349 9872 2.031333 CAGAAACACAAGCCAGAAGAGC 60.031 50.000 0.00 0.00 0.00 4.09
7350 9873 3.209410 ACAGAAACACAAGCCAGAAGAG 58.791 45.455 0.00 0.00 0.00 2.85
7351 9874 3.281727 ACAGAAACACAAGCCAGAAGA 57.718 42.857 0.00 0.00 0.00 2.87
7352 9875 4.816385 TCTAACAGAAACACAAGCCAGAAG 59.184 41.667 0.00 0.00 0.00 2.85
7353 9876 4.776349 TCTAACAGAAACACAAGCCAGAA 58.224 39.130 0.00 0.00 0.00 3.02
7354 9877 4.415881 TCTAACAGAAACACAAGCCAGA 57.584 40.909 0.00 0.00 0.00 3.86
7355 9878 4.023707 CCTTCTAACAGAAACACAAGCCAG 60.024 45.833 0.00 0.00 33.19 4.85
7356 9879 3.882888 CCTTCTAACAGAAACACAAGCCA 59.117 43.478 0.00 0.00 33.19 4.75
7357 9880 3.304726 GCCTTCTAACAGAAACACAAGCC 60.305 47.826 0.00 0.00 33.19 4.35
7358 9881 3.304726 GGCCTTCTAACAGAAACACAAGC 60.305 47.826 0.00 0.00 33.19 4.01
7359 9882 3.882888 TGGCCTTCTAACAGAAACACAAG 59.117 43.478 3.32 0.00 33.19 3.16
7583 10143 2.372172 TCAAACCCTCTTCCAGTCTTCC 59.628 50.000 0.00 0.00 0.00 3.46
7584 10144 3.771577 TCAAACCCTCTTCCAGTCTTC 57.228 47.619 0.00 0.00 0.00 2.87
7585 10145 4.731313 AATCAAACCCTCTTCCAGTCTT 57.269 40.909 0.00 0.00 0.00 3.01
7586 10146 5.310857 ACTTAATCAAACCCTCTTCCAGTCT 59.689 40.000 0.00 0.00 0.00 3.24
7587 10147 5.561679 ACTTAATCAAACCCTCTTCCAGTC 58.438 41.667 0.00 0.00 0.00 3.51
7588 10148 5.584551 ACTTAATCAAACCCTCTTCCAGT 57.415 39.130 0.00 0.00 0.00 4.00
7589 10149 6.241645 AGAACTTAATCAAACCCTCTTCCAG 58.758 40.000 0.00 0.00 0.00 3.86
7590 10150 6.200878 AGAACTTAATCAAACCCTCTTCCA 57.799 37.500 0.00 0.00 0.00 3.53
7629 10189 3.347077 AGCGACCTAGTACAGTAGTGT 57.653 47.619 8.55 8.55 41.06 3.55
7682 10399 1.067212 CTTATTCACGGACGGAGGGAG 59.933 57.143 0.00 0.00 0.00 4.30
7683 10400 1.108776 CTTATTCACGGACGGAGGGA 58.891 55.000 0.00 0.00 0.00 4.20
7684 10401 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
7685 10402 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
7686 10403 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
7687 10404 2.819019 TGTACACTTATTCACGGACGGA 59.181 45.455 0.00 0.00 0.00 4.69
7688 10405 3.220507 TGTACACTTATTCACGGACGG 57.779 47.619 0.00 0.00 0.00 4.79
7689 10406 5.100259 AGATTGTACACTTATTCACGGACG 58.900 41.667 0.00 0.00 0.00 4.79
7690 10407 6.198591 GCTAGATTGTACACTTATTCACGGAC 59.801 42.308 0.00 0.00 0.00 4.79
7691 10408 6.096423 AGCTAGATTGTACACTTATTCACGGA 59.904 38.462 0.00 0.00 0.00 4.69
7692 10409 6.273825 AGCTAGATTGTACACTTATTCACGG 58.726 40.000 0.00 0.00 0.00 4.94
7693 10410 7.757097 AAGCTAGATTGTACACTTATTCACG 57.243 36.000 0.00 0.00 0.00 4.35
7694 10411 9.760660 CAAAAGCTAGATTGTACACTTATTCAC 57.239 33.333 0.00 0.00 0.00 3.18
7695 10412 9.502091 ACAAAAGCTAGATTGTACACTTATTCA 57.498 29.630 9.88 0.00 37.96 2.57
7698 10415 9.726438 AGAACAAAAGCTAGATTGTACACTTAT 57.274 29.630 11.48 0.00 38.75 1.73
7700 10417 9.555727 TTAGAACAAAAGCTAGATTGTACACTT 57.444 29.630 11.48 0.00 38.75 3.16
7701 10418 9.726438 ATTAGAACAAAAGCTAGATTGTACACT 57.274 29.630 11.48 12.51 38.75 3.55
7794 10511 9.965824 ATTCGTTTTGAAATGTAGTTTGAGAAT 57.034 25.926 0.00 0.00 40.71 2.40
7795 10512 9.445786 GATTCGTTTTGAAATGTAGTTTGAGAA 57.554 29.630 0.00 0.00 40.71 2.87
7796 10513 8.836413 AGATTCGTTTTGAAATGTAGTTTGAGA 58.164 29.630 0.00 0.00 40.71 3.27
7799 10516 9.878599 ACTAGATTCGTTTTGAAATGTAGTTTG 57.121 29.630 0.00 0.00 40.71 2.93
7800 10517 9.878599 CACTAGATTCGTTTTGAAATGTAGTTT 57.121 29.630 0.00 0.00 40.71 2.66
7801 10518 9.268268 TCACTAGATTCGTTTTGAAATGTAGTT 57.732 29.630 0.00 0.00 40.71 2.24
7802 10519 8.827177 TCACTAGATTCGTTTTGAAATGTAGT 57.173 30.769 0.00 0.00 40.71 2.73
7805 10522 9.436957 AGTATCACTAGATTCGTTTTGAAATGT 57.563 29.630 0.00 0.00 40.71 2.71
7813 10530 9.886132 ACCAAATTAGTATCACTAGATTCGTTT 57.114 29.630 0.00 0.00 35.67 3.60
7814 10531 9.314321 CACCAAATTAGTATCACTAGATTCGTT 57.686 33.333 0.00 0.00 35.67 3.85
7815 10532 8.475639 ACACCAAATTAGTATCACTAGATTCGT 58.524 33.333 0.00 0.00 35.67 3.85
7816 10533 8.873215 ACACCAAATTAGTATCACTAGATTCG 57.127 34.615 0.00 0.00 35.67 3.34
7817 10534 9.817809 TGACACCAAATTAGTATCACTAGATTC 57.182 33.333 0.00 0.00 35.67 2.52
7824 10541 9.450807 GCATTTATGACACCAAATTAGTATCAC 57.549 33.333 0.00 0.00 0.00 3.06
7825 10542 9.407380 AGCATTTATGACACCAAATTAGTATCA 57.593 29.630 0.00 0.00 0.00 2.15
7832 10549 9.777297 AAGTAAAAGCATTTATGACACCAAATT 57.223 25.926 0.00 0.00 37.28 1.82
7833 10550 9.777297 AAAGTAAAAGCATTTATGACACCAAAT 57.223 25.926 0.00 0.00 37.28 2.32
7834 10551 9.606631 AAAAGTAAAAGCATTTATGACACCAAA 57.393 25.926 0.00 0.00 37.28 3.28
7835 10552 9.606631 AAAAAGTAAAAGCATTTATGACACCAA 57.393 25.926 0.00 0.00 37.28 3.67
7858 10575 7.712204 AACTTTGACCACCTTTCTAGAAAAA 57.288 32.000 18.25 5.85 0.00 1.94
7859 10576 7.712204 AAACTTTGACCACCTTTCTAGAAAA 57.288 32.000 18.25 0.00 0.00 2.29
7860 10577 7.712204 AAAACTTTGACCACCTTTCTAGAAA 57.288 32.000 16.85 16.85 0.00 2.52
7861 10578 8.810990 TTAAAACTTTGACCACCTTTCTAGAA 57.189 30.769 0.00 0.00 0.00 2.10
7862 10579 8.810990 TTTAAAACTTTGACCACCTTTCTAGA 57.189 30.769 0.00 0.00 0.00 2.43
7863 10580 9.297586 GTTTTAAAACTTTGACCACCTTTCTAG 57.702 33.333 21.27 0.00 36.03 2.43
7864 10581 9.027202 AGTTTTAAAACTTTGACCACCTTTCTA 57.973 29.630 24.66 0.00 46.52 2.10
7865 10582 7.903145 AGTTTTAAAACTTTGACCACCTTTCT 58.097 30.769 24.66 0.83 46.52 2.52
7885 10602 9.174166 TCTAGCTTTGTCTTAAGTCAAAGTTTT 57.826 29.630 34.73 27.15 45.88 2.43
7886 10603 8.732746 TCTAGCTTTGTCTTAAGTCAAAGTTT 57.267 30.769 34.73 28.67 45.88 2.66
7887 10604 8.778358 CATCTAGCTTTGTCTTAAGTCAAAGTT 58.222 33.333 34.73 32.82 45.88 2.66
7888 10605 7.934120 ACATCTAGCTTTGTCTTAAGTCAAAGT 59.066 33.333 34.73 27.63 45.88 2.66
7889 10606 8.316640 ACATCTAGCTTTGTCTTAAGTCAAAG 57.683 34.615 32.88 32.88 46.44 2.77
7890 10607 9.204570 GTACATCTAGCTTTGTCTTAAGTCAAA 57.795 33.333 21.34 21.34 33.44 2.69
7891 10608 8.364894 TGTACATCTAGCTTTGTCTTAAGTCAA 58.635 33.333 10.54 10.54 0.00 3.18
7892 10609 7.813148 GTGTACATCTAGCTTTGTCTTAAGTCA 59.187 37.037 0.00 0.00 0.00 3.41
7893 10610 8.030106 AGTGTACATCTAGCTTTGTCTTAAGTC 58.970 37.037 0.00 0.00 0.00 3.01
7894 10611 7.897864 AGTGTACATCTAGCTTTGTCTTAAGT 58.102 34.615 0.00 0.00 0.00 2.24
7895 10612 8.764524 AAGTGTACATCTAGCTTTGTCTTAAG 57.235 34.615 0.00 0.00 0.00 1.85
7898 10615 9.372369 GAATAAGTGTACATCTAGCTTTGTCTT 57.628 33.333 0.00 0.00 0.00 3.01
7899 10616 8.531982 TGAATAAGTGTACATCTAGCTTTGTCT 58.468 33.333 0.00 0.00 0.00 3.41
7900 10617 8.596380 GTGAATAAGTGTACATCTAGCTTTGTC 58.404 37.037 0.00 0.00 0.00 3.18
7901 10618 7.275779 CGTGAATAAGTGTACATCTAGCTTTGT 59.724 37.037 0.00 0.00 0.00 2.83
7902 10619 7.254117 CCGTGAATAAGTGTACATCTAGCTTTG 60.254 40.741 0.00 0.00 0.00 2.77
7903 10620 6.757010 CCGTGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 0.00 3.51
7904 10621 6.096423 TCCGTGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
7905 10622 5.593095 TCCGTGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 0.00 3.32
7906 10623 5.686397 GTCCGTGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 0.00 3.42
7907 10624 5.907945 CGTCCGTGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 0.00 2.43
7908 10625 5.220912 CCGTCCGTGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 0.00 1.98
7909 10626 4.439700 CCGTCCGTGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 0.00 2.90
7910 10627 3.795101 CCGTCCGTGAATAAGTGTACATC 59.205 47.826 0.00 0.00 0.00 3.06
7911 10628 3.444742 TCCGTCCGTGAATAAGTGTACAT 59.555 43.478 0.00 0.00 0.00 2.29
7912 10629 2.819019 TCCGTCCGTGAATAAGTGTACA 59.181 45.455 0.00 0.00 0.00 2.90
7913 10630 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
7914 10631 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
7915 10632 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
7916 10633 1.470979 CCCTCCGTCCGTGAATAAGTG 60.471 57.143 0.00 0.00 0.00 3.16
7917 10634 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.000 0.00 0.00 0.00 2.24
7918 10635 1.067212 CTCCCTCCGTCCGTGAATAAG 59.933 57.143 0.00 0.00 0.00 1.73
7919 10636 1.108776 CTCCCTCCGTCCGTGAATAA 58.891 55.000 0.00 0.00 0.00 1.40
7920 10637 0.033796 ACTCCCTCCGTCCGTGAATA 60.034 55.000 0.00 0.00 0.00 1.75
7921 10638 0.033796 TACTCCCTCCGTCCGTGAAT 60.034 55.000 0.00 0.00 0.00 2.57
7922 10639 0.033796 ATACTCCCTCCGTCCGTGAA 60.034 55.000 0.00 0.00 0.00 3.18
7923 10640 0.839277 TATACTCCCTCCGTCCGTGA 59.161 55.000 0.00 0.00 0.00 4.35
7924 10641 1.202734 TCTATACTCCCTCCGTCCGTG 60.203 57.143 0.00 0.00 0.00 4.94
7925 10642 1.135094 TCTATACTCCCTCCGTCCGT 58.865 55.000 0.00 0.00 0.00 4.69
7926 10643 1.878734 GTTCTATACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
7927 10644 2.941480 TGTTCTATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
7928 10645 4.583489 TGATTGTTCTATACTCCCTCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
7929 10646 4.543689 TGATTGTTCTATACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
7930 10647 5.509840 CCTTGATTGTTCTATACTCCCTCCG 60.510 48.000 0.00 0.00 0.00 4.63
7931 10648 5.602978 TCCTTGATTGTTCTATACTCCCTCC 59.397 44.000 0.00 0.00 0.00 4.30
7932 10649 6.732896 TCCTTGATTGTTCTATACTCCCTC 57.267 41.667 0.00 0.00 0.00 4.30
7933 10650 7.698163 ATTCCTTGATTGTTCTATACTCCCT 57.302 36.000 0.00 0.00 0.00 4.20
7934 10651 9.274206 GTTATTCCTTGATTGTTCTATACTCCC 57.726 37.037 0.00 0.00 0.00 4.30
7938 10655 9.937175 GCAAGTTATTCCTTGATTGTTCTATAC 57.063 33.333 5.17 0.00 43.65 1.47
7939 10656 9.120538 GGCAAGTTATTCCTTGATTGTTCTATA 57.879 33.333 5.17 0.00 43.65 1.31
7940 10657 7.836183 AGGCAAGTTATTCCTTGATTGTTCTAT 59.164 33.333 5.17 0.00 43.65 1.98
7951 10668 9.700831 AAAATAGATACAGGCAAGTTATTCCTT 57.299 29.630 0.00 0.00 0.00 3.36
7988 10705 4.320641 GCACACGTATTTAGGAGGCAAAAA 60.321 41.667 0.00 0.00 0.00 1.94
8179 10896 5.379706 AAGGAGGGAATATGACTTCAAGG 57.620 43.478 0.00 0.00 0.00 3.61
8215 10932 4.542735 GGTTAAACTGAACCATGAAACGG 58.457 43.478 0.00 0.00 46.97 4.44
8235 10952 5.189539 ACATTTTATTGGCCTAATTGCTGGT 59.810 36.000 3.32 0.00 0.00 4.00
8261 10978 3.467374 TGTGAGTTGTGACACATAGCA 57.533 42.857 9.55 4.99 41.19 3.49
8263 10980 5.466393 TCACATTGTGAGTTGTGACACATAG 59.534 40.000 15.41 0.00 45.35 2.23
8274 10992 3.253188 CCGTTGGATTCACATTGTGAGTT 59.747 43.478 18.27 11.03 43.69 3.01
8333 11051 9.959749 GATTTAAGTTTGACCAACAATTAGACA 57.040 29.630 0.00 0.00 37.93 3.41
8371 11089 4.080299 CCTCTCCTTTTATGTAAGGTGCCT 60.080 45.833 0.00 0.00 44.19 4.75
8375 11093 4.473922 GTCCCCTCTCCTTTTATGTAAGGT 59.526 45.833 0.00 0.00 44.19 3.50
8398 11117 9.950680 ATCTTTAGCCATAATTTTGACGTAATG 57.049 29.630 0.00 0.00 0.00 1.90
8406 11125 8.623903 TGCACTAGATCTTTAGCCATAATTTTG 58.376 33.333 0.00 0.00 0.00 2.44
8411 11130 6.830912 ACATGCACTAGATCTTTAGCCATAA 58.169 36.000 0.00 0.00 0.00 1.90
8530 11249 9.866655 ACCAGATACATGTACCAAATGATTTAT 57.133 29.630 7.96 0.00 0.00 1.40
8535 11254 7.936847 GGATAACCAGATACATGTACCAAATGA 59.063 37.037 7.96 0.00 35.97 2.57
8543 11262 6.066032 TCAGTCGGATAACCAGATACATGTA 58.934 40.000 8.27 8.27 35.59 2.29
8666 11385 5.163591 ACGACCATGAAATATGTACTCGACA 60.164 40.000 0.00 0.00 43.97 4.35
8672 11391 8.360325 TGTATTGACGACCATGAAATATGTAC 57.640 34.615 0.00 0.00 0.00 2.90
8716 11435 7.119992 TGCAAACAGTTGTACGTAATATGGATT 59.880 33.333 0.00 0.00 37.06 3.01
8777 11497 3.359654 CAACCAAAGGAAAAGTTCGACG 58.640 45.455 0.00 0.00 0.00 5.12
8780 11500 3.115554 CTGCAACCAAAGGAAAAGTTCG 58.884 45.455 0.00 0.00 0.00 3.95
8795 11515 2.368439 TCATCTGCCATTACCTGCAAC 58.632 47.619 0.00 0.00 36.98 4.17
8862 11582 2.760092 GCTGATTTGGACCAATTGCCTA 59.240 45.455 7.99 0.00 0.00 3.93
8926 11646 2.995939 CAGAAAGAGCGTATCAGCACAA 59.004 45.455 0.00 0.00 40.15 3.33
9008 11728 4.901197 TTACTCATCTAGGTGGCACAAA 57.099 40.909 20.82 5.43 44.16 2.83
9146 11917 2.129607 CATGTGCAGCAAGGAAACAAC 58.870 47.619 0.00 0.00 0.00 3.32
9196 11971 1.408702 GGAACAAGGCAGAACAAAGCA 59.591 47.619 0.00 0.00 0.00 3.91
9197 11972 1.408702 TGGAACAAGGCAGAACAAAGC 59.591 47.619 0.00 0.00 31.92 3.51
9198 11973 2.689983 ACTGGAACAAGGCAGAACAAAG 59.310 45.455 0.00 0.00 38.70 2.77
9199 11974 2.733956 ACTGGAACAAGGCAGAACAAA 58.266 42.857 0.00 0.00 38.70 2.83
9200 11975 2.435372 ACTGGAACAAGGCAGAACAA 57.565 45.000 0.00 0.00 38.70 2.83
9201 11976 3.788227 ATACTGGAACAAGGCAGAACA 57.212 42.857 0.00 0.00 38.70 3.18
9202 11977 4.798574 CAAATACTGGAACAAGGCAGAAC 58.201 43.478 0.00 0.00 38.70 3.01
9203 11978 3.255642 GCAAATACTGGAACAAGGCAGAA 59.744 43.478 0.00 0.00 38.70 3.02
9204 11979 2.819608 GCAAATACTGGAACAAGGCAGA 59.180 45.455 0.00 0.00 38.70 4.26
9205 11980 2.821969 AGCAAATACTGGAACAAGGCAG 59.178 45.455 0.00 0.00 38.70 4.85
9258 12043 7.307989 GCTGAACAAAGATGCTTGTTAAGACTA 60.308 37.037 14.80 0.00 45.29 2.59
9259 12044 6.514048 GCTGAACAAAGATGCTTGTTAAGACT 60.514 38.462 14.80 0.00 45.29 3.24
9266 12051 4.142093 ACAAAGCTGAACAAAGATGCTTGT 60.142 37.500 0.00 0.00 42.23 3.16
9270 12055 4.805192 TGAAACAAAGCTGAACAAAGATGC 59.195 37.500 0.00 0.00 0.00 3.91
9278 12063 5.689819 ACGACATATGAAACAAAGCTGAAC 58.310 37.500 10.38 0.00 0.00 3.18
9282 12067 4.327357 CGAGACGACATATGAAACAAAGCT 59.673 41.667 10.38 0.00 0.00 3.74
9283 12068 4.091509 ACGAGACGACATATGAAACAAAGC 59.908 41.667 10.38 0.00 0.00 3.51
9284 12069 5.763444 ACGAGACGACATATGAAACAAAG 57.237 39.130 10.38 0.00 0.00 2.77
9286 12071 4.986034 ACAACGAGACGACATATGAAACAA 59.014 37.500 10.38 0.00 0.00 2.83
9287 12072 4.552355 ACAACGAGACGACATATGAAACA 58.448 39.130 10.38 0.00 0.00 2.83
9289 12074 5.692654 TGAAACAACGAGACGACATATGAAA 59.307 36.000 10.38 0.00 0.00 2.69
9290 12075 5.224135 TGAAACAACGAGACGACATATGAA 58.776 37.500 10.38 0.00 0.00 2.57
9291 12076 4.800784 TGAAACAACGAGACGACATATGA 58.199 39.130 10.38 0.00 0.00 2.15
9305 12090 3.923017 AGCCAGCACTTATGAAACAAC 57.077 42.857 0.00 0.00 0.00 3.32
9325 12110 1.596709 CGTTTGAACAGATGCACGCAA 60.597 47.619 0.00 0.00 0.00 4.85
9332 12117 1.791555 GCCATCGCGTTTGAACAGATG 60.792 52.381 5.77 16.08 40.40 2.90
9358 12143 0.037512 TCTGCAGCTGAGCTCAGTTC 60.038 55.000 37.25 27.08 45.45 3.01
9378 12163 4.348198 TGATTCGCATGCAAACGATTTA 57.652 36.364 19.57 6.22 38.25 1.40
9411 12196 1.340248 CAGATGATGGATTTGCCCAGC 59.660 52.381 0.00 0.00 42.62 4.85
9412 12197 2.940158 TCAGATGATGGATTTGCCCAG 58.060 47.619 0.00 0.00 39.97 4.45
9414 12199 3.760684 GGTATCAGATGATGGATTTGCCC 59.239 47.826 5.58 0.00 36.05 5.36
9415 12200 4.660168 AGGTATCAGATGATGGATTTGCC 58.340 43.478 5.58 0.00 36.05 4.52
9444 12257 3.667960 GCGTTTGGTGTCTATGCTTCTTG 60.668 47.826 0.00 0.00 0.00 3.02
9470 12287 2.019156 GCAGGGAGTAAGTGATTGGGC 61.019 57.143 0.00 0.00 0.00 5.36
9493 12310 2.752903 ACCAACCATGTTATTCGCTTCC 59.247 45.455 0.00 0.00 0.00 3.46
9571 12388 1.672854 CGCCGGTCTAGGGAACATGA 61.673 60.000 1.90 0.00 0.00 3.07
9628 12445 2.408835 GCAAATGCGATCCACCGG 59.591 61.111 0.00 0.00 0.00 5.28
9736 12573 4.143406 ACTTACCTTAGGTCCCAAGTCT 57.857 45.455 7.39 0.00 37.09 3.24
9746 12583 6.183360 TGCATGACTAAGCTACTTACCTTAGG 60.183 42.308 0.00 0.00 42.92 2.69
9752 12589 3.804873 GCCTGCATGACTAAGCTACTTAC 59.195 47.826 0.00 0.00 0.00 2.34
9753 12590 3.706594 AGCCTGCATGACTAAGCTACTTA 59.293 43.478 0.00 0.00 0.00 2.24
9754 12591 2.503356 AGCCTGCATGACTAAGCTACTT 59.497 45.455 0.00 0.00 0.00 2.24
9755 12592 2.114616 AGCCTGCATGACTAAGCTACT 58.885 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.