Multiple sequence alignment - TraesCS1D01G161300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G161300 chr1D 100.000 7802 0 0 1 7802 228293170 228300971 0.000000e+00 14408.0
1 TraesCS1D01G161300 chr1D 97.434 2533 43 12 2345 4869 208853084 208850566 0.000000e+00 4298.0
2 TraesCS1D01G161300 chr1D 94.310 2513 78 30 4861 7318 208835764 208833262 0.000000e+00 3788.0
3 TraesCS1D01G161300 chr1D 95.975 795 22 4 748 1533 208856546 208855753 0.000000e+00 1282.0
4 TraesCS1D01G161300 chr1D 95.532 761 16 5 1570 2312 208855751 208854991 0.000000e+00 1201.0
5 TraesCS1D01G161300 chr1D 94.490 490 19 6 7312 7801 208824487 208824006 0.000000e+00 749.0
6 TraesCS1D01G161300 chr1D 95.134 411 13 7 341 747 1148536 1148943 6.600000e-180 641.0
7 TraesCS1D01G161300 chr1D 94.621 409 18 4 341 747 313862278 313861872 1.430000e-176 630.0
8 TraesCS1D01G161300 chr1D 92.690 342 23 2 1 340 208856887 208856546 7.030000e-135 492.0
9 TraesCS1D01G161300 chr1A 95.850 6289 150 33 749 6958 296204538 296210794 0.000000e+00 10065.0
10 TraesCS1D01G161300 chr1A 89.179 804 50 17 7020 7802 296210795 296211582 0.000000e+00 968.0
11 TraesCS1D01G161300 chr1A 90.202 347 25 6 1 339 296204191 296204536 2.000000e-120 444.0
12 TraesCS1D01G161300 chr1A 89.076 119 12 1 2541 2659 97162400 97162283 6.310000e-31 147.0
13 TraesCS1D01G161300 chr1B 94.891 5383 152 34 2122 7429 327835805 327841139 0.000000e+00 8303.0
14 TraesCS1D01G161300 chr1B 95.467 1412 30 9 748 2127 327831341 327832750 0.000000e+00 2222.0
15 TraesCS1D01G161300 chr1B 94.152 342 17 3 1 340 327831001 327831341 1.160000e-142 518.0
16 TraesCS1D01G161300 chr1B 89.859 355 32 3 7451 7802 327841202 327841555 3.320000e-123 453.0
17 TraesCS1D01G161300 chr1B 76.151 717 74 45 2550 3234 212661873 212661222 3.560000e-73 287.0
18 TraesCS1D01G161300 chr3D 95.444 417 12 4 341 751 531260478 531260063 0.000000e+00 658.0
19 TraesCS1D01G161300 chr3D 95.122 410 17 3 341 747 23783866 23783457 1.840000e-180 643.0
20 TraesCS1D01G161300 chr3D 83.448 145 20 4 7660 7802 23088148 23088290 1.770000e-26 132.0
21 TraesCS1D01G161300 chr2D 94.903 412 15 5 341 747 11204201 11204611 2.370000e-179 640.0
22 TraesCS1D01G161300 chr2D 94.660 412 18 4 341 748 151430581 151430992 3.070000e-178 636.0
23 TraesCS1D01G161300 chr2D 94.258 418 20 4 332 747 324035411 324034996 3.070000e-178 636.0
24 TraesCS1D01G161300 chr2D 100.000 30 0 0 1006 1035 634059615 634059586 1.000000e-03 56.5
25 TraesCS1D01G161300 chr7D 94.660 412 16 5 341 747 101249629 101249219 1.100000e-177 634.0
26 TraesCS1D01G161300 chr7D 79.279 555 81 25 2875 3407 11125999 11125457 2.680000e-94 357.0
27 TraesCS1D01G161300 chr7D 84.236 203 16 9 6201 6388 41051672 41051873 4.810000e-42 183.0
28 TraesCS1D01G161300 chr5D 94.621 409 17 4 340 744 100116278 100116685 5.140000e-176 628.0
29 TraesCS1D01G161300 chr5D 85.759 316 41 3 2863 3177 526982658 526982970 1.620000e-86 331.0
30 TraesCS1D01G161300 chr5D 81.633 147 22 5 7659 7802 546088946 546088802 4.950000e-22 117.0
31 TraesCS1D01G161300 chr4A 85.027 374 38 13 2978 3337 374356147 374356516 1.600000e-96 364.0
32 TraesCS1D01G161300 chr4A 84.354 147 17 6 7659 7802 577541092 577540949 1.060000e-28 139.0
33 TraesCS1D01G161300 chr4A 83.221 149 13 11 7660 7802 622197860 622198002 8.220000e-25 126.0
34 TraesCS1D01G161300 chr3A 84.273 337 35 10 3019 3337 692317543 692317879 5.880000e-81 313.0
35 TraesCS1D01G161300 chr3A 89.076 119 12 1 2541 2659 136526592 136526475 6.310000e-31 147.0
36 TraesCS1D01G161300 chr4B 84.407 295 30 13 2875 3163 223387824 223388108 7.710000e-70 276.0
37 TraesCS1D01G161300 chr4B 82.090 201 13 11 6201 6388 545464071 545463881 4.880000e-32 150.0
38 TraesCS1D01G161300 chr4B 89.076 119 12 1 2541 2659 223387535 223387652 6.310000e-31 147.0
39 TraesCS1D01G161300 chr5A 84.677 248 23 10 3000 3234 383830572 383830817 4.710000e-57 233.0
40 TraesCS1D01G161300 chr5A 90.000 110 9 2 7694 7802 526384744 526384636 2.940000e-29 141.0
41 TraesCS1D01G161300 chr3B 86.387 191 18 5 2474 2657 515894367 515894556 1.330000e-47 202.0
42 TraesCS1D01G161300 chr3B 83.099 142 20 4 7663 7802 42628450 42628311 8.220000e-25 126.0
43 TraesCS1D01G161300 chr7B 84.158 202 16 9 6201 6388 678623342 678623541 1.730000e-41 182.0
44 TraesCS1D01G161300 chr7A 84.158 202 16 9 6201 6388 112567507 112567706 1.730000e-41 182.0
45 TraesCS1D01G161300 chr2A 89.076 119 12 1 2541 2659 22590835 22590952 6.310000e-31 147.0
46 TraesCS1D01G161300 chr2A 89.076 119 12 1 2541 2659 22629101 22629218 6.310000e-31 147.0
47 TraesCS1D01G161300 chr2A 100.000 30 0 0 1006 1035 779665999 779666028 1.000000e-03 56.5
48 TraesCS1D01G161300 chr4D 89.189 111 7 5 7694 7802 25492918 25493025 4.910000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G161300 chr1D 228293170 228300971 7801 False 14408.000000 14408 100.000000 1 7802 1 chr1D.!!$F2 7801
1 TraesCS1D01G161300 chr1D 208833262 208835764 2502 True 3788.000000 3788 94.310000 4861 7318 1 chr1D.!!$R2 2457
2 TraesCS1D01G161300 chr1D 208850566 208856887 6321 True 1818.250000 4298 95.407750 1 4869 4 chr1D.!!$R4 4868
3 TraesCS1D01G161300 chr1A 296204191 296211582 7391 False 3825.666667 10065 91.743667 1 7802 3 chr1A.!!$F1 7801
4 TraesCS1D01G161300 chr1B 327831001 327841555 10554 False 2874.000000 8303 93.592250 1 7802 4 chr1B.!!$F1 7801
5 TraesCS1D01G161300 chr1B 212661222 212661873 651 True 287.000000 287 76.151000 2550 3234 1 chr1B.!!$R1 684
6 TraesCS1D01G161300 chr7D 11125457 11125999 542 True 357.000000 357 79.279000 2875 3407 1 chr7D.!!$R1 532
7 TraesCS1D01G161300 chr4B 223387535 223388108 573 False 211.500000 276 86.741500 2541 3163 2 chr4B.!!$F1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 604 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.0 37.67 3.01 F
728 737 0.668706 CGGAAGCATATGAGCTCGGG 60.669 60.000 9.64 0.0 45.89 5.14 F
2472 7448 0.179034 GCGCCTCTCTTGATTCCCAT 60.179 55.000 0.00 0.0 0.00 4.00 F
3743 8783 2.835764 ACTTTCGGTAAGCCTGATGGTA 59.164 45.455 0.00 0.0 37.37 3.25 F
4696 9742 0.249322 GCTTAAGCGCCCGATGTCTA 60.249 55.000 12.53 0.0 0.00 2.59 F
6366 11468 1.169661 TTGAACGTTGCCTTGGCGAT 61.170 50.000 5.00 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 1855 2.767505 AGTCAACTAAAACCCAGAGCG 58.232 47.619 0.00 0.0 0.00 5.03 R
2720 7696 1.213926 GGACCAATCAGCAGATTCCCT 59.786 52.381 0.65 0.0 42.46 4.20 R
4162 9203 2.599973 GCAAGCAAAAGGATAACATGCG 59.400 45.455 0.00 0.0 41.72 4.73 R
5072 10118 0.545171 ATCCACAGCCAGATGACCTG 59.455 55.000 0.00 0.0 42.55 4.00 R
6432 11534 0.888619 TGCTTCGAGGTCTACACAGG 59.111 55.000 0.00 0.0 0.00 4.00 R
7606 12780 0.106149 GGGCCGTCCGATTCAATACT 59.894 55.000 0.00 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 1.466167 CAGCCGGAGAAAACACATGAG 59.534 52.381 5.05 0.00 0.00 2.90
98 100 1.072331 AGCCGGAGAAAACACATGAGT 59.928 47.619 5.05 0.00 0.00 3.41
143 145 7.039714 ACCTTCATCCATTTTGAACCTTCTAAC 60.040 37.037 0.00 0.00 0.00 2.34
271 279 9.705290 AAAATGGAAACGTCATAGCTTATTTTT 57.295 25.926 0.00 0.00 0.00 1.94
304 312 2.161609 GCTTGGACATTGACCGGTAAAG 59.838 50.000 7.34 3.13 0.00 1.85
312 320 5.127491 ACATTGACCGGTAAAGAGAACAAA 58.873 37.500 7.34 0.00 0.00 2.83
340 349 9.931210 AAAACTCTCTACAAAACAAGAAATACG 57.069 29.630 0.00 0.00 0.00 3.06
341 350 7.653767 ACTCTCTACAAAACAAGAAATACGG 57.346 36.000 0.00 0.00 0.00 4.02
342 351 7.439381 ACTCTCTACAAAACAAGAAATACGGA 58.561 34.615 0.00 0.00 0.00 4.69
343 352 7.929785 ACTCTCTACAAAACAAGAAATACGGAA 59.070 33.333 0.00 0.00 0.00 4.30
344 353 8.306680 TCTCTACAAAACAAGAAATACGGAAG 57.693 34.615 0.00 0.00 0.00 3.46
345 354 6.894828 TCTACAAAACAAGAAATACGGAAGC 58.105 36.000 0.00 0.00 0.00 3.86
346 355 4.533222 ACAAAACAAGAAATACGGAAGCG 58.467 39.130 0.00 0.00 0.00 4.68
347 356 3.824414 AAACAAGAAATACGGAAGCGG 57.176 42.857 0.00 0.00 0.00 5.52
348 357 2.754946 ACAAGAAATACGGAAGCGGA 57.245 45.000 0.00 0.00 0.00 5.54
349 358 2.618053 ACAAGAAATACGGAAGCGGAG 58.382 47.619 0.00 0.00 0.00 4.63
350 359 1.933853 CAAGAAATACGGAAGCGGAGG 59.066 52.381 0.00 0.00 0.00 4.30
351 360 1.481871 AGAAATACGGAAGCGGAGGA 58.518 50.000 0.00 0.00 0.00 3.71
352 361 1.829222 AGAAATACGGAAGCGGAGGAA 59.171 47.619 0.00 0.00 0.00 3.36
353 362 2.434702 AGAAATACGGAAGCGGAGGAAT 59.565 45.455 0.00 0.00 0.00 3.01
354 363 2.528041 AATACGGAAGCGGAGGAATC 57.472 50.000 0.00 0.00 0.00 2.52
355 364 0.314302 ATACGGAAGCGGAGGAATCG 59.686 55.000 0.00 0.00 0.00 3.34
356 365 0.749091 TACGGAAGCGGAGGAATCGA 60.749 55.000 0.00 0.00 0.00 3.59
357 366 1.364171 CGGAAGCGGAGGAATCGAT 59.636 57.895 0.00 0.00 0.00 3.59
358 367 0.664767 CGGAAGCGGAGGAATCGATC 60.665 60.000 0.00 0.00 0.00 3.69
370 379 4.734398 GGAATCGATCCTGAGCTCATAT 57.266 45.455 18.63 13.94 45.56 1.78
371 380 4.431809 GGAATCGATCCTGAGCTCATATG 58.568 47.826 18.63 9.23 45.56 1.78
372 381 3.523606 ATCGATCCTGAGCTCATATGC 57.476 47.619 18.63 6.79 0.00 3.14
373 382 7.358655 GGAATCGATCCTGAGCTCATATGCT 62.359 48.000 18.63 0.23 45.56 3.79
387 396 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
388 397 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
389 398 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
390 399 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
391 400 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
392 401 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
393 402 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
394 403 3.680490 TCCCGCATGAACAGTAAAATCA 58.320 40.909 0.00 0.00 0.00 2.57
395 404 4.075682 TCCCGCATGAACAGTAAAATCAA 58.924 39.130 0.00 0.00 0.00 2.57
396 405 4.520874 TCCCGCATGAACAGTAAAATCAAA 59.479 37.500 0.00 0.00 0.00 2.69
397 406 5.010112 TCCCGCATGAACAGTAAAATCAAAA 59.990 36.000 0.00 0.00 0.00 2.44
398 407 5.694006 CCCGCATGAACAGTAAAATCAAAAA 59.306 36.000 0.00 0.00 0.00 1.94
452 461 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
453 462 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
454 463 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
455 464 6.293004 TGGGAGAAACATTGACAAAAGTTT 57.707 33.333 17.09 17.09 39.28 2.66
456 465 6.706295 TGGGAGAAACATTGACAAAAGTTTT 58.294 32.000 17.76 0.00 37.33 2.43
457 466 7.841956 TGGGAGAAACATTGACAAAAGTTTTA 58.158 30.769 17.76 5.91 37.33 1.52
458 467 8.314751 TGGGAGAAACATTGACAAAAGTTTTAA 58.685 29.630 17.76 0.00 37.33 1.52
459 468 8.817100 GGGAGAAACATTGACAAAAGTTTTAAG 58.183 33.333 17.76 0.00 37.33 1.85
460 469 9.366216 GGAGAAACATTGACAAAAGTTTTAAGT 57.634 29.630 17.76 0.00 37.33 2.24
462 471 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
463 472 6.902224 ACATTGACAAAAGTTTTAAGTGCC 57.098 33.333 0.00 0.00 0.00 5.01
464 473 6.639563 ACATTGACAAAAGTTTTAAGTGCCT 58.360 32.000 0.00 0.00 0.00 4.75
465 474 6.534793 ACATTGACAAAAGTTTTAAGTGCCTG 59.465 34.615 0.00 0.00 0.00 4.85
466 475 4.429108 TGACAAAAGTTTTAAGTGCCTGC 58.571 39.130 0.00 0.00 0.00 4.85
467 476 4.081972 TGACAAAAGTTTTAAGTGCCTGCA 60.082 37.500 0.00 0.00 0.00 4.41
468 477 4.826556 ACAAAAGTTTTAAGTGCCTGCAA 58.173 34.783 0.00 0.00 0.00 4.08
469 478 5.241662 ACAAAAGTTTTAAGTGCCTGCAAA 58.758 33.333 0.00 0.00 0.00 3.68
470 479 5.703130 ACAAAAGTTTTAAGTGCCTGCAAAA 59.297 32.000 0.00 0.00 0.00 2.44
471 480 6.205658 ACAAAAGTTTTAAGTGCCTGCAAAAA 59.794 30.769 0.00 0.00 0.00 1.94
472 481 7.094420 ACAAAAGTTTTAAGTGCCTGCAAAAAT 60.094 29.630 0.00 0.00 0.00 1.82
473 482 7.389803 AAAGTTTTAAGTGCCTGCAAAAATT 57.610 28.000 0.00 0.00 31.70 1.82
474 483 6.603237 AGTTTTAAGTGCCTGCAAAAATTC 57.397 33.333 0.00 0.00 0.00 2.17
475 484 5.234116 AGTTTTAAGTGCCTGCAAAAATTCG 59.766 36.000 0.00 0.00 0.00 3.34
476 485 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
477 486 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
478 487 1.052287 GTGCCTGCAAAAATTCGTCG 58.948 50.000 0.00 0.00 0.00 5.12
479 488 0.662970 TGCCTGCAAAAATTCGTCGC 60.663 50.000 0.00 0.00 0.00 5.19
480 489 1.664643 GCCTGCAAAAATTCGTCGCG 61.665 55.000 0.00 0.00 0.00 5.87
481 490 0.110419 CCTGCAAAAATTCGTCGCGA 60.110 50.000 3.71 3.71 0.00 5.87
491 500 2.780361 TTCGTCGCGAAATCACATTC 57.220 45.000 12.06 0.00 43.00 2.67
492 501 0.996462 TCGTCGCGAAATCACATTCC 59.004 50.000 12.06 0.00 31.06 3.01
493 502 0.999406 CGTCGCGAAATCACATTCCT 59.001 50.000 12.06 0.00 0.00 3.36
494 503 2.159352 TCGTCGCGAAATCACATTCCTA 60.159 45.455 12.06 0.00 31.06 2.94
495 504 2.216488 CGTCGCGAAATCACATTCCTAG 59.784 50.000 12.06 0.00 0.00 3.02
496 505 3.444916 GTCGCGAAATCACATTCCTAGA 58.555 45.455 12.06 0.00 0.00 2.43
497 506 3.863424 GTCGCGAAATCACATTCCTAGAA 59.137 43.478 12.06 0.00 0.00 2.10
498 507 4.026475 GTCGCGAAATCACATTCCTAGAAG 60.026 45.833 12.06 0.00 0.00 2.85
499 508 3.246226 CGCGAAATCACATTCCTAGAAGG 59.754 47.826 0.00 0.00 36.46 3.46
500 509 3.002759 GCGAAATCACATTCCTAGAAGGC 59.997 47.826 0.00 0.00 34.61 4.35
501 510 4.191544 CGAAATCACATTCCTAGAAGGCA 58.808 43.478 0.00 0.00 34.61 4.75
502 511 4.818546 CGAAATCACATTCCTAGAAGGCAT 59.181 41.667 0.00 0.00 34.61 4.40
503 512 5.277683 CGAAATCACATTCCTAGAAGGCATG 60.278 44.000 4.33 4.33 43.38 4.06
504 513 3.565764 TCACATTCCTAGAAGGCATGG 57.434 47.619 9.83 0.81 42.29 3.66
505 514 1.952296 CACATTCCTAGAAGGCATGGC 59.048 52.381 12.14 12.14 42.29 4.40
506 515 1.565759 ACATTCCTAGAAGGCATGGCA 59.434 47.619 22.64 0.00 42.29 4.92
507 516 2.025037 ACATTCCTAGAAGGCATGGCAA 60.025 45.455 22.64 5.18 42.29 4.52
508 517 2.897271 TTCCTAGAAGGCATGGCAAA 57.103 45.000 22.64 2.44 34.61 3.68
509 518 2.897271 TCCTAGAAGGCATGGCAAAA 57.103 45.000 22.64 2.81 34.61 2.44
510 519 3.168035 TCCTAGAAGGCATGGCAAAAA 57.832 42.857 22.64 3.19 34.61 1.94
536 545 9.758651 AAAACAAAAACAGTACTCTGAAAAAGT 57.241 25.926 0.00 0.00 43.76 2.66
537 546 9.758651 AAACAAAAACAGTACTCTGAAAAAGTT 57.241 25.926 0.00 0.00 43.76 2.66
539 548 9.836076 ACAAAAACAGTACTCTGAAAAAGTTAC 57.164 29.630 0.00 0.00 43.76 2.50
540 549 9.285770 CAAAAACAGTACTCTGAAAAAGTTACC 57.714 33.333 0.00 0.00 43.76 2.85
541 550 8.803397 AAAACAGTACTCTGAAAAAGTTACCT 57.197 30.769 0.00 0.00 43.76 3.08
542 551 8.803397 AAACAGTACTCTGAAAAAGTTACCTT 57.197 30.769 0.00 0.00 43.76 3.50
543 552 8.434733 AACAGTACTCTGAAAAAGTTACCTTC 57.565 34.615 0.00 0.00 43.76 3.46
544 553 7.562135 ACAGTACTCTGAAAAAGTTACCTTCA 58.438 34.615 0.00 0.00 43.76 3.02
545 554 8.044908 ACAGTACTCTGAAAAAGTTACCTTCAA 58.955 33.333 0.00 0.00 43.76 2.69
546 555 8.889717 CAGTACTCTGAAAAAGTTACCTTCAAA 58.110 33.333 0.00 0.00 43.76 2.69
547 556 9.457436 AGTACTCTGAAAAAGTTACCTTCAAAA 57.543 29.630 0.00 0.00 0.00 2.44
548 557 9.717892 GTACTCTGAAAAAGTTACCTTCAAAAG 57.282 33.333 0.00 0.00 0.00 2.27
549 558 7.258441 ACTCTGAAAAAGTTACCTTCAAAAGC 58.742 34.615 0.00 0.00 0.00 3.51
550 559 7.093945 ACTCTGAAAAAGTTACCTTCAAAAGCA 60.094 33.333 0.00 0.00 0.00 3.91
551 560 7.781056 TCTGAAAAAGTTACCTTCAAAAGCAT 58.219 30.769 0.00 0.00 0.00 3.79
552 561 8.257306 TCTGAAAAAGTTACCTTCAAAAGCATT 58.743 29.630 0.00 0.00 0.00 3.56
553 562 8.785329 TGAAAAAGTTACCTTCAAAAGCATTT 57.215 26.923 0.00 0.00 42.41 2.32
568 577 6.930667 AAAGCATTTTGAAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
570 579 8.611654 AAAGCATTTTGAAGCACTGAATTTAT 57.388 26.923 0.00 0.00 31.62 1.40
571 580 8.611654 AAGCATTTTGAAGCACTGAATTTATT 57.388 26.923 0.00 0.00 0.00 1.40
572 581 8.611654 AGCATTTTGAAGCACTGAATTTATTT 57.388 26.923 0.00 0.00 0.00 1.40
573 582 9.059260 AGCATTTTGAAGCACTGAATTTATTTT 57.941 25.926 0.00 0.00 0.00 1.82
574 583 9.667989 GCATTTTGAAGCACTGAATTTATTTTT 57.332 25.926 0.00 0.00 0.00 1.94
592 601 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
593 602 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
594 603 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
595 604 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
596 605 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
597 606 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
598 607 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
599 608 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
600 609 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
601 610 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
602 611 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
603 612 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
604 613 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
605 614 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
606 615 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
607 616 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
608 617 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
609 618 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
610 619 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
611 620 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
612 621 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
613 622 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
614 623 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
615 624 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
616 625 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
617 626 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
618 627 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
619 628 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
620 629 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
621 630 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
622 631 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
623 632 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
624 633 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
625 634 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
626 635 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
627 636 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
628 637 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
629 638 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
630 639 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
631 640 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
632 641 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
633 642 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
634 643 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
635 644 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
636 645 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
637 646 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
638 647 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
639 648 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
640 649 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
641 650 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
642 651 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
643 652 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
644 653 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
645 654 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
646 655 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
647 656 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
648 657 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
649 658 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
650 659 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
651 660 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
652 661 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
653 662 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
654 663 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
655 664 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
711 720 6.761731 TTTTCAATTTTACTGTTCATGCGG 57.238 33.333 0.00 0.00 0.00 5.69
712 721 5.697473 TTCAATTTTACTGTTCATGCGGA 57.303 34.783 0.00 0.00 0.00 5.54
713 722 5.697473 TCAATTTTACTGTTCATGCGGAA 57.303 34.783 0.00 0.00 0.00 4.30
714 723 5.698832 TCAATTTTACTGTTCATGCGGAAG 58.301 37.500 0.00 0.00 35.82 3.46
727 736 2.819667 CGGAAGCATATGAGCTCGG 58.180 57.895 9.64 0.00 45.89 4.63
728 737 0.668706 CGGAAGCATATGAGCTCGGG 60.669 60.000 9.64 0.00 45.89 5.14
729 738 0.681733 GGAAGCATATGAGCTCGGGA 59.318 55.000 9.64 0.00 45.89 5.14
730 739 1.277557 GGAAGCATATGAGCTCGGGAT 59.722 52.381 9.64 0.00 45.89 3.85
731 740 2.615869 GAAGCATATGAGCTCGGGATC 58.384 52.381 9.64 0.00 45.89 3.36
732 741 1.637338 AGCATATGAGCTCGGGATCA 58.363 50.000 5.33 5.33 42.18 2.92
733 742 1.973515 AGCATATGAGCTCGGGATCAA 59.026 47.619 7.61 0.00 42.18 2.57
734 743 2.369860 AGCATATGAGCTCGGGATCAAA 59.630 45.455 7.61 0.00 42.18 2.69
735 744 3.141398 GCATATGAGCTCGGGATCAAAA 58.859 45.455 7.61 0.00 41.37 2.44
736 745 3.188048 GCATATGAGCTCGGGATCAAAAG 59.812 47.826 7.61 0.72 41.37 2.27
737 746 4.635223 CATATGAGCTCGGGATCAAAAGA 58.365 43.478 7.61 0.00 41.37 2.52
738 747 3.853355 ATGAGCTCGGGATCAAAAGAT 57.147 42.857 7.61 0.00 41.37 2.40
739 748 2.910199 TGAGCTCGGGATCAAAAGATG 58.090 47.619 0.00 0.00 34.74 2.90
740 749 2.501316 TGAGCTCGGGATCAAAAGATGA 59.499 45.455 0.00 0.00 43.67 2.92
741 750 2.869192 GAGCTCGGGATCAAAAGATGAC 59.131 50.000 0.00 0.00 41.93 3.06
742 751 2.503356 AGCTCGGGATCAAAAGATGACT 59.497 45.455 0.00 0.00 41.93 3.41
743 752 3.054802 AGCTCGGGATCAAAAGATGACTT 60.055 43.478 0.00 0.00 41.93 3.01
744 753 3.691609 GCTCGGGATCAAAAGATGACTTT 59.308 43.478 0.00 0.00 46.64 2.66
745 754 4.201861 GCTCGGGATCAAAAGATGACTTTC 60.202 45.833 0.00 0.00 44.32 2.62
746 755 3.932710 TCGGGATCAAAAGATGACTTTCG 59.067 43.478 0.00 0.00 44.32 3.46
1203 1227 1.135460 GCATCTTGAGCTGTTCTTGGC 60.135 52.381 0.00 0.00 0.00 4.52
1488 1512 6.323739 TGTTTGTGAGGCTCCTTAAAAGAAAT 59.676 34.615 12.86 0.00 0.00 2.17
1568 1592 8.744652 CCCTTGTGTTATGTAATTTACCATTGA 58.255 33.333 4.17 0.00 0.00 2.57
1651 1675 5.124776 CACCTACTTTGTGGAAGTTGTGAAA 59.875 40.000 12.21 0.00 46.34 2.69
1741 1765 2.719426 AACGAACCTAGTTCCACTCG 57.281 50.000 2.06 0.00 39.14 4.18
1744 1768 1.711206 GAACCTAGTTCCACTCGCAC 58.289 55.000 0.00 0.00 36.65 5.34
1779 1803 7.770801 TTACCTGTTCGATGTTGATAATGAG 57.229 36.000 0.00 0.00 0.00 2.90
1831 1855 2.477863 GGCATGACCGCACAACTATTTC 60.478 50.000 0.00 0.00 0.00 2.17
2363 7339 4.332543 TCATAACGCTTGGCTGTATTTGAG 59.667 41.667 0.00 0.00 0.00 3.02
2472 7448 0.179034 GCGCCTCTCTTGATTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
2751 7727 5.575157 TGCTGATTGGTCCAACCTATAAAA 58.425 37.500 6.41 0.00 39.58 1.52
3572 8607 8.523915 AGTAATGCTGACCATGATTCATAAAA 57.476 30.769 0.00 0.00 33.49 1.52
3588 8623 8.833231 ATTCATAAAATAGTATGTCGGACCAG 57.167 34.615 5.55 0.00 33.85 4.00
3597 8632 3.973206 ATGTCGGACCAGATGTTGTAA 57.027 42.857 5.55 0.00 0.00 2.41
3644 8680 7.389607 ACGTAACATGAGCCTTAGTTGTTTATT 59.610 33.333 0.00 0.00 33.03 1.40
3743 8783 2.835764 ACTTTCGGTAAGCCTGATGGTA 59.164 45.455 0.00 0.00 37.37 3.25
3855 8896 9.577110 CTAATTTTTCAGCTTCATGCAGAATTA 57.423 29.630 0.00 0.00 44.60 1.40
4530 9573 0.490017 TCCAGAAGACCAGGTACCCA 59.510 55.000 8.74 0.00 0.00 4.51
4540 9583 2.844348 ACCAGGTACCCATAAGGAGTTG 59.156 50.000 8.74 0.00 39.89 3.16
4634 9677 3.653836 TCACCCCAACACTACCTGTATTT 59.346 43.478 0.00 0.00 30.51 1.40
4635 9678 4.105057 TCACCCCAACACTACCTGTATTTT 59.895 41.667 0.00 0.00 30.51 1.82
4636 9679 4.217550 CACCCCAACACTACCTGTATTTTG 59.782 45.833 0.00 0.00 30.51 2.44
4662 9708 7.277760 GTGTTTTTAACAGAAGCCAATGAAACT 59.722 33.333 0.00 0.00 43.10 2.66
4663 9709 7.491048 TGTTTTTAACAGAAGCCAATGAAACTC 59.509 33.333 0.00 0.00 36.25 3.01
4664 9710 5.705609 TTAACAGAAGCCAATGAAACTCC 57.294 39.130 0.00 0.00 0.00 3.85
4696 9742 0.249322 GCTTAAGCGCCCGATGTCTA 60.249 55.000 12.53 0.00 0.00 2.59
4697 9743 1.605712 GCTTAAGCGCCCGATGTCTAT 60.606 52.381 12.53 0.00 0.00 1.98
4708 9754 4.430007 CCCGATGTCTATGTCGAAAGAAA 58.570 43.478 0.00 0.00 45.01 2.52
4721 9767 5.048507 GTCGAAAGAAACTTCTGTACCAGT 58.951 41.667 0.00 0.00 45.01 4.00
4948 9994 5.798132 CTTCTGCTGCTCCCACATATATAA 58.202 41.667 0.00 0.00 0.00 0.98
4987 10033 3.068165 TGCATGTAGTAGTGAAGGATCCG 59.932 47.826 5.98 0.00 0.00 4.18
5071 10117 2.744768 GCTGCCGCTGCTGACTTAC 61.745 63.158 14.47 0.00 38.61 2.34
5072 10118 2.047274 TGCCGCTGCTGACTTACC 60.047 61.111 0.70 0.00 38.71 2.85
5112 10176 4.604843 TCATGACAAAGATGTTCATCGC 57.395 40.909 7.08 0.00 40.74 4.58
5130 10194 5.123661 TCATCGCTGCATATTTCAGTCAAAA 59.876 36.000 0.00 0.00 34.21 2.44
5205 10269 4.186077 TGGGGACATTAACTGTTTTGGA 57.814 40.909 0.00 0.00 38.54 3.53
5268 10332 5.596361 TGACTGGTATGATGTTTGTGGTTTT 59.404 36.000 0.00 0.00 0.00 2.43
5734 10826 6.472887 TGACAAAACTAGAGGTATTGAAGGG 58.527 40.000 0.00 0.00 0.00 3.95
5753 10845 9.425248 TTGAAGGGAAATAGAATCAGCAATAAT 57.575 29.630 0.00 0.00 0.00 1.28
5776 10868 7.823745 ATATTTACTGCTGTTATTTGGGAGG 57.176 36.000 0.09 0.00 0.00 4.30
5801 10893 7.283807 GGCATGATTATGGTGCATATATTGAGA 59.716 37.037 0.00 0.00 40.53 3.27
5856 10948 2.432206 ACCGCTGTTGGCAAAATAAC 57.568 45.000 0.00 0.00 41.91 1.89
5924 11016 4.714802 TGCTGTGTGTACTTCCTACCATAT 59.285 41.667 0.00 0.00 0.00 1.78
5952 11046 9.900710 CCATACTGTAGTCTCATTCTATACAAC 57.099 37.037 0.00 0.00 0.00 3.32
6052 11146 8.487970 CCAAGTATATTACACTAGACATTTGCG 58.512 37.037 0.00 0.00 0.00 4.85
6265 11360 5.913137 TCTTCATGGTTCACACAGTTTTT 57.087 34.783 0.00 0.00 0.00 1.94
6366 11468 1.169661 TTGAACGTTGCCTTGGCGAT 61.170 50.000 5.00 0.00 0.00 4.58
6376 11478 1.604278 GCCTTGGCGATGATCCTTAAC 59.396 52.381 0.00 0.00 0.00 2.01
6432 11534 0.601558 TTGTCGTCTACTCCACCAGC 59.398 55.000 0.00 0.00 0.00 4.85
6434 11536 0.966370 GTCGTCTACTCCACCAGCCT 60.966 60.000 0.00 0.00 0.00 4.58
6539 11643 1.857837 CGTTTGTTCCATTTGTGCCAC 59.142 47.619 0.00 0.00 0.00 5.01
6645 11749 5.541845 CCCCTCTCTTTCAATTCAAAAACC 58.458 41.667 0.00 0.00 0.00 3.27
6786 11892 6.477053 CTCCTTCAGGATATCTTCAAGACA 57.523 41.667 0.00 0.00 44.46 3.41
6869 11975 4.319333 CGACGTAGGATTAACAGCTACGAT 60.319 45.833 7.21 0.00 43.89 3.73
6999 12105 1.372087 GCAGCAGAGTGGTGGCATAC 61.372 60.000 8.11 0.00 45.26 2.39
7022 12128 7.961326 ACAGGAAACCAAAGCTTGATATATT 57.039 32.000 0.00 0.00 0.00 1.28
7023 12129 8.000780 ACAGGAAACCAAAGCTTGATATATTC 57.999 34.615 0.00 0.76 0.00 1.75
7042 12155 3.032017 TCTTTTCGCTCCTTGTCTCTG 57.968 47.619 0.00 0.00 0.00 3.35
7043 12156 2.365617 TCTTTTCGCTCCTTGTCTCTGT 59.634 45.455 0.00 0.00 0.00 3.41
7086 12201 4.959210 ACTGTATATGACACCTTCAGCTCT 59.041 41.667 0.00 0.00 37.77 4.09
7087 12202 5.068460 ACTGTATATGACACCTTCAGCTCTC 59.932 44.000 0.00 0.00 37.77 3.20
7088 12203 4.956075 TGTATATGACACCTTCAGCTCTCA 59.044 41.667 0.00 0.00 37.77 3.27
7089 12204 4.669206 ATATGACACCTTCAGCTCTCAG 57.331 45.455 0.00 0.00 37.77 3.35
7090 12205 0.319728 TGACACCTTCAGCTCTCAGC 59.680 55.000 0.00 0.00 42.84 4.26
7199 12315 3.627395 TTTTAGGATGGCTGATCACGT 57.373 42.857 0.00 0.00 31.91 4.49
7285 12401 1.004044 CAGCATGTCCTTCAGGTTCCT 59.996 52.381 0.00 0.00 36.34 3.36
7330 12452 6.767524 TGGTGAATTTTACTGTTGTCTTGT 57.232 33.333 0.00 0.00 0.00 3.16
7334 12456 8.784043 GGTGAATTTTACTGTTGTCTTGTAGAT 58.216 33.333 0.00 0.00 0.00 1.98
7336 12458 9.554395 TGAATTTTACTGTTGTCTTGTAGATGA 57.446 29.630 0.00 0.00 0.00 2.92
7382 12512 5.593968 TGTGTGTGTTACGTGATAGAAAGT 58.406 37.500 0.00 0.00 0.00 2.66
7386 12516 6.638063 TGTGTGTTACGTGATAGAAAGTGTAC 59.362 38.462 0.00 0.00 0.00 2.90
7398 12528 4.672409 AGAAAGTGTACAAAAACTGCTGC 58.328 39.130 0.00 0.00 0.00 5.25
7421 12551 1.337167 TGAGCACGGTCAGATGAACAG 60.337 52.381 0.00 0.00 0.00 3.16
7468 12639 5.034554 CGAGAACGTACTTGTACCTTGTA 57.965 43.478 5.47 0.00 34.56 2.41
7555 12727 1.977293 GAAGCCGCAGAAGATCCCCT 61.977 60.000 0.00 0.00 0.00 4.79
7606 12780 1.912220 CCTTGGATCTGGCCCGTTA 59.088 57.895 0.00 0.00 0.00 3.18
7627 12801 0.542333 TATTGAATCGGACGGCCCAA 59.458 50.000 0.00 0.00 34.14 4.12
7628 12802 0.322997 ATTGAATCGGACGGCCCAAA 60.323 50.000 0.00 0.00 34.14 3.28
7714 12888 1.557832 ACCAGTTTATAAGCCGAGGCA 59.442 47.619 17.18 0.00 44.88 4.75
7722 12896 1.329913 TAAGCCGAGGCATGAGAGCA 61.330 55.000 17.18 0.00 44.88 4.26
7738 12912 1.515304 GCACTCTCGTCTCTTCGGC 60.515 63.158 0.00 0.00 0.00 5.54
7782 12956 5.303078 ACGATACAGAGAAGATTAGCATGGT 59.697 40.000 1.62 1.62 0.00 3.55
7784 12958 4.052159 ACAGAGAAGATTAGCATGGTCG 57.948 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 4.918588 ACCTCCGTTCCAAAATACAAGAT 58.081 39.130 0.00 0.00 0.00 2.40
68 70 1.913951 TTCTCCGGCTGGATGTGCAT 61.914 55.000 16.52 0.00 45.33 3.96
97 99 1.265635 TGTTGCCAAATACTGTCGCAC 59.734 47.619 0.00 0.00 0.00 5.34
98 100 1.265635 GTGTTGCCAAATACTGTCGCA 59.734 47.619 0.00 0.00 0.00 5.10
104 106 3.763897 GGATGAAGGTGTTGCCAAATACT 59.236 43.478 0.00 0.00 40.61 2.12
123 125 5.774690 TGCTGTTAGAAGGTTCAAAATGGAT 59.225 36.000 0.00 0.00 0.00 3.41
271 279 3.342377 TGTCCAAGCCGTGATGATAAA 57.658 42.857 0.00 0.00 0.00 1.40
325 334 3.911964 CCGCTTCCGTATTTCTTGTTTTG 59.088 43.478 0.00 0.00 0.00 2.44
339 348 0.664767 GATCGATTCCTCCGCTTCCG 60.665 60.000 0.00 0.00 0.00 4.30
340 349 0.319986 GGATCGATTCCTCCGCTTCC 60.320 60.000 0.00 0.00 41.78 3.46
341 350 3.202923 GGATCGATTCCTCCGCTTC 57.797 57.895 0.00 0.00 41.78 3.86
349 358 4.431809 CATATGAGCTCAGGATCGATTCC 58.568 47.826 22.96 2.41 45.85 3.01
350 359 3.864583 GCATATGAGCTCAGGATCGATTC 59.135 47.826 22.96 0.00 0.00 2.52
351 360 3.514706 AGCATATGAGCTCAGGATCGATT 59.485 43.478 22.96 4.95 42.18 3.34
352 361 3.098377 AGCATATGAGCTCAGGATCGAT 58.902 45.455 22.96 5.74 42.18 3.59
353 362 2.523245 AGCATATGAGCTCAGGATCGA 58.477 47.619 22.96 3.29 42.18 3.59
372 381 3.689161 TGATTTTACTGTTCATGCGGGAG 59.311 43.478 0.00 0.00 0.00 4.30
373 382 3.680490 TGATTTTACTGTTCATGCGGGA 58.320 40.909 0.00 0.00 0.00 5.14
374 383 4.433186 TTGATTTTACTGTTCATGCGGG 57.567 40.909 0.00 0.00 0.00 6.13
375 384 6.761731 TTTTTGATTTTACTGTTCATGCGG 57.238 33.333 0.00 0.00 0.00 5.69
428 437 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
429 438 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
430 439 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
431 440 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
432 441 5.930837 AACTTTTGTCAATGTTTCTCCCA 57.069 34.783 0.00 0.00 28.24 4.37
433 442 8.710835 TTAAAACTTTTGTCAATGTTTCTCCC 57.289 30.769 13.86 0.00 38.61 4.30
434 443 9.366216 ACTTAAAACTTTTGTCAATGTTTCTCC 57.634 29.630 13.86 0.00 38.61 3.71
436 445 8.655970 GCACTTAAAACTTTTGTCAATGTTTCT 58.344 29.630 13.86 9.23 38.61 2.52
437 446 7.902917 GGCACTTAAAACTTTTGTCAATGTTTC 59.097 33.333 13.86 4.96 38.61 2.78
438 447 7.606073 AGGCACTTAAAACTTTTGTCAATGTTT 59.394 29.630 9.87 9.87 37.32 2.83
439 448 7.064490 CAGGCACTTAAAACTTTTGTCAATGTT 59.936 33.333 0.00 0.00 34.60 2.71
440 449 6.534793 CAGGCACTTAAAACTTTTGTCAATGT 59.465 34.615 0.00 0.00 34.60 2.71
441 450 6.509997 GCAGGCACTTAAAACTTTTGTCAATG 60.510 38.462 0.00 0.00 34.60 2.82
442 451 5.523552 GCAGGCACTTAAAACTTTTGTCAAT 59.476 36.000 0.00 0.00 34.60 2.57
443 452 4.867608 GCAGGCACTTAAAACTTTTGTCAA 59.132 37.500 0.00 0.00 34.60 3.18
444 453 4.081972 TGCAGGCACTTAAAACTTTTGTCA 60.082 37.500 0.00 0.00 34.60 3.58
445 454 4.429108 TGCAGGCACTTAAAACTTTTGTC 58.571 39.130 0.00 0.00 34.60 3.18
446 455 4.464069 TGCAGGCACTTAAAACTTTTGT 57.536 36.364 0.00 0.00 34.60 2.83
447 456 5.793026 TTTGCAGGCACTTAAAACTTTTG 57.207 34.783 0.00 0.00 34.60 2.44
448 457 6.809630 TTTTTGCAGGCACTTAAAACTTTT 57.190 29.167 0.00 0.00 34.60 2.27
449 458 7.389803 AATTTTTGCAGGCACTTAAAACTTT 57.610 28.000 4.91 0.00 34.60 2.66
450 459 6.238076 CGAATTTTTGCAGGCACTTAAAACTT 60.238 34.615 4.91 0.00 34.60 2.66
451 460 5.234116 CGAATTTTTGCAGGCACTTAAAACT 59.766 36.000 4.91 0.00 34.60 2.66
452 461 5.006261 ACGAATTTTTGCAGGCACTTAAAAC 59.994 36.000 4.91 0.00 34.60 2.43
453 462 5.112686 ACGAATTTTTGCAGGCACTTAAAA 58.887 33.333 0.00 0.00 34.60 1.52
454 463 4.688021 ACGAATTTTTGCAGGCACTTAAA 58.312 34.783 0.00 0.00 34.60 1.52
455 464 4.295051 GACGAATTTTTGCAGGCACTTAA 58.705 39.130 0.00 0.00 34.60 1.85
456 465 3.608241 CGACGAATTTTTGCAGGCACTTA 60.608 43.478 0.00 0.00 34.60 2.24
457 466 2.742774 GACGAATTTTTGCAGGCACTT 58.257 42.857 0.00 0.00 34.60 3.16
458 467 1.334960 CGACGAATTTTTGCAGGCACT 60.335 47.619 0.00 0.00 43.88 4.40
459 468 1.052287 CGACGAATTTTTGCAGGCAC 58.948 50.000 0.00 0.00 0.00 5.01
460 469 0.662970 GCGACGAATTTTTGCAGGCA 60.663 50.000 0.00 0.00 0.00 4.75
461 470 1.664643 CGCGACGAATTTTTGCAGGC 61.665 55.000 0.00 0.00 0.00 4.85
462 471 0.110419 TCGCGACGAATTTTTGCAGG 60.110 50.000 3.71 0.00 31.06 4.85
463 472 1.669184 TTCGCGACGAATTTTTGCAG 58.331 45.000 9.15 0.00 41.05 4.41
464 473 2.106750 TTTCGCGACGAATTTTTGCA 57.893 40.000 9.15 0.00 45.28 4.08
465 474 2.654528 TGATTTCGCGACGAATTTTTGC 59.345 40.909 9.15 0.00 45.28 3.68
466 475 3.661728 TGTGATTTCGCGACGAATTTTTG 59.338 39.130 9.15 0.00 45.28 2.44
467 476 3.879427 TGTGATTTCGCGACGAATTTTT 58.121 36.364 9.15 0.00 45.28 1.94
468 477 3.529634 TGTGATTTCGCGACGAATTTT 57.470 38.095 9.15 4.58 45.28 1.82
469 478 3.740044 ATGTGATTTCGCGACGAATTT 57.260 38.095 9.15 6.59 45.28 1.82
470 479 3.485216 GGAATGTGATTTCGCGACGAATT 60.485 43.478 9.15 10.95 45.28 2.17
471 480 2.030457 GGAATGTGATTTCGCGACGAAT 59.970 45.455 9.15 7.10 45.28 3.34
472 481 1.392168 GGAATGTGATTTCGCGACGAA 59.608 47.619 9.15 0.66 44.28 3.85
473 482 0.996462 GGAATGTGATTTCGCGACGA 59.004 50.000 9.15 0.00 0.00 4.20
474 483 0.999406 AGGAATGTGATTTCGCGACG 59.001 50.000 9.15 0.00 0.00 5.12
475 484 3.444916 TCTAGGAATGTGATTTCGCGAC 58.555 45.455 9.15 0.00 0.00 5.19
476 485 3.793797 TCTAGGAATGTGATTTCGCGA 57.206 42.857 3.71 3.71 0.00 5.87
477 486 3.246226 CCTTCTAGGAATGTGATTTCGCG 59.754 47.826 0.00 0.00 37.67 5.87
478 487 3.002759 GCCTTCTAGGAATGTGATTTCGC 59.997 47.826 0.00 0.00 37.67 4.70
479 488 4.191544 TGCCTTCTAGGAATGTGATTTCG 58.808 43.478 0.00 0.00 37.67 3.46
480 489 6.069684 CATGCCTTCTAGGAATGTGATTTC 57.930 41.667 5.64 0.00 44.91 2.17
488 497 3.386932 TTTGCCATGCCTTCTAGGAAT 57.613 42.857 0.00 0.00 37.67 3.01
489 498 2.897271 TTTGCCATGCCTTCTAGGAA 57.103 45.000 0.00 0.00 37.67 3.36
490 499 2.897271 TTTTGCCATGCCTTCTAGGA 57.103 45.000 0.00 0.00 37.67 2.94
510 519 9.758651 ACTTTTTCAGAGTACTGTTTTTGTTTT 57.241 25.926 0.00 0.00 43.81 2.43
511 520 9.758651 AACTTTTTCAGAGTACTGTTTTTGTTT 57.241 25.926 0.00 0.00 43.81 2.83
513 522 9.836076 GTAACTTTTTCAGAGTACTGTTTTTGT 57.164 29.630 0.00 0.00 43.81 2.83
514 523 9.285770 GGTAACTTTTTCAGAGTACTGTTTTTG 57.714 33.333 0.00 0.00 43.81 2.44
544 553 6.930667 AATTCAGTGCTTCAAAATGCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
545 554 6.930667 AAATTCAGTGCTTCAAAATGCTTT 57.069 29.167 0.00 0.00 0.00 3.51
546 555 8.611654 AATAAATTCAGTGCTTCAAAATGCTT 57.388 26.923 0.00 0.00 0.00 3.91
547 556 8.611654 AAATAAATTCAGTGCTTCAAAATGCT 57.388 26.923 0.00 0.00 0.00 3.79
548 557 9.667989 AAAAATAAATTCAGTGCTTCAAAATGC 57.332 25.926 0.00 0.00 0.00 3.56
585 594 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
586 595 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
587 596 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
588 597 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
589 598 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
590 599 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
591 600 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
592 601 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
593 602 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
594 603 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
595 604 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
596 605 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
597 606 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
598 607 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
599 608 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
600 609 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
601 610 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
602 611 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
603 612 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
604 613 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
605 614 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
606 615 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
607 616 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
608 617 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
609 618 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
610 619 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
611 620 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
612 621 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
613 622 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
614 623 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
615 624 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
616 625 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
617 626 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
618 627 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
619 628 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
620 629 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
621 630 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
622 631 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
623 632 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
624 633 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
625 634 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
626 635 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
627 636 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
628 637 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
629 638 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
687 696 6.980978 TCCGCATGAACAGTAAAATTGAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
688 697 6.507900 TCCGCATGAACAGTAAAATTGAAAA 58.492 32.000 0.00 0.00 0.00 2.29
689 698 6.078202 TCCGCATGAACAGTAAAATTGAAA 57.922 33.333 0.00 0.00 0.00 2.69
690 699 5.697473 TCCGCATGAACAGTAAAATTGAA 57.303 34.783 0.00 0.00 0.00 2.69
691 700 5.697473 TTCCGCATGAACAGTAAAATTGA 57.303 34.783 0.00 0.00 0.00 2.57
692 701 4.324402 GCTTCCGCATGAACAGTAAAATTG 59.676 41.667 0.00 0.00 35.78 2.32
693 702 4.022416 TGCTTCCGCATGAACAGTAAAATT 60.022 37.500 0.00 0.00 42.25 1.82
694 703 3.505680 TGCTTCCGCATGAACAGTAAAAT 59.494 39.130 0.00 0.00 42.25 1.82
695 704 2.881513 TGCTTCCGCATGAACAGTAAAA 59.118 40.909 0.00 0.00 42.25 1.52
696 705 2.499197 TGCTTCCGCATGAACAGTAAA 58.501 42.857 0.00 0.00 42.25 2.01
697 706 2.177394 TGCTTCCGCATGAACAGTAA 57.823 45.000 0.00 0.00 42.25 2.24
698 707 3.925453 TGCTTCCGCATGAACAGTA 57.075 47.368 0.00 0.00 42.25 2.74
699 708 4.798433 TGCTTCCGCATGAACAGT 57.202 50.000 0.00 0.00 42.25 3.55
708 717 1.287730 CCGAGCTCATATGCTTCCGC 61.288 60.000 15.40 0.00 44.17 5.54
709 718 0.668706 CCCGAGCTCATATGCTTCCG 60.669 60.000 15.40 0.00 44.17 4.30
710 719 0.681733 TCCCGAGCTCATATGCTTCC 59.318 55.000 15.40 0.00 44.17 3.46
711 720 2.028658 TGATCCCGAGCTCATATGCTTC 60.029 50.000 15.40 1.64 44.17 3.86
712 721 1.973515 TGATCCCGAGCTCATATGCTT 59.026 47.619 15.40 0.00 44.17 3.91
713 722 8.431815 ATCTTTTGATCCCGAGCTCATATGCT 62.432 42.308 15.40 0.00 39.52 3.79
714 723 2.462456 TTGATCCCGAGCTCATATGC 57.538 50.000 15.40 0.11 0.00 3.14
715 724 4.635223 TCTTTTGATCCCGAGCTCATATG 58.365 43.478 15.40 0.00 0.00 1.78
716 725 4.963318 TCTTTTGATCCCGAGCTCATAT 57.037 40.909 15.40 3.21 0.00 1.78
717 726 4.344968 TCATCTTTTGATCCCGAGCTCATA 59.655 41.667 15.40 0.00 36.97 2.15
718 727 3.135348 TCATCTTTTGATCCCGAGCTCAT 59.865 43.478 15.40 0.00 36.97 2.90
719 728 2.501316 TCATCTTTTGATCCCGAGCTCA 59.499 45.455 15.40 0.00 36.97 4.26
720 729 2.869192 GTCATCTTTTGATCCCGAGCTC 59.131 50.000 2.73 2.73 36.97 4.09
721 730 2.503356 AGTCATCTTTTGATCCCGAGCT 59.497 45.455 0.00 0.00 36.97 4.09
722 731 2.911484 AGTCATCTTTTGATCCCGAGC 58.089 47.619 0.00 0.00 36.97 5.03
723 732 4.033358 CGAAAGTCATCTTTTGATCCCGAG 59.967 45.833 2.79 0.00 43.87 4.63
724 733 3.932710 CGAAAGTCATCTTTTGATCCCGA 59.067 43.478 2.79 0.00 43.87 5.14
725 734 3.485877 GCGAAAGTCATCTTTTGATCCCG 60.486 47.826 10.86 3.55 43.87 5.14
726 735 3.181496 GGCGAAAGTCATCTTTTGATCCC 60.181 47.826 10.86 1.53 43.87 3.85
727 736 3.691609 AGGCGAAAGTCATCTTTTGATCC 59.308 43.478 10.86 4.96 43.87 3.36
728 737 4.954092 AGGCGAAAGTCATCTTTTGATC 57.046 40.909 10.86 0.00 43.87 2.92
729 738 5.712152 AAAGGCGAAAGTCATCTTTTGAT 57.288 34.783 10.86 0.00 43.87 2.57
730 739 5.514274 AAAAGGCGAAAGTCATCTTTTGA 57.486 34.783 10.86 0.00 43.87 2.69
778 787 1.602311 CAACTCCAAAGAGCACAGCT 58.398 50.000 0.00 0.00 44.65 4.24
1203 1227 5.010012 ACAAACTAAGAAGGCCAACATGAAG 59.990 40.000 5.01 0.00 0.00 3.02
1422 1446 8.779561 CATTCTCTCGAATTAAAATTGAACACG 58.220 33.333 0.00 0.00 37.77 4.49
1488 1512 9.719279 CTTTCGGTATTACACTTACAAACAAAA 57.281 29.630 0.00 0.00 0.00 2.44
1568 1592 6.071784 TGCTGCAATATCTGAAGTGACAAAAT 60.072 34.615 0.00 0.00 32.40 1.82
1744 1768 6.984474 ACATCGAACAGGTAATAACACCATAG 59.016 38.462 0.00 0.00 41.40 2.23
1831 1855 2.767505 AGTCAACTAAAACCCAGAGCG 58.232 47.619 0.00 0.00 0.00 5.03
2683 7659 7.820872 TCTGTGGTACAGCTTAATAGGTTAAAC 59.179 37.037 4.14 0.00 45.54 2.01
2684 7660 7.909518 TCTGTGGTACAGCTTAATAGGTTAAA 58.090 34.615 4.14 0.00 45.54 1.52
2720 7696 1.213926 GGACCAATCAGCAGATTCCCT 59.786 52.381 0.65 0.00 42.46 4.20
2751 7727 8.743085 AGTTCTGTTATGAGCATTATGACAAT 57.257 30.769 0.00 0.00 0.00 2.71
2785 7770 6.481313 GCTAGAGCATGTGTTCATTCATCTTA 59.519 38.462 0.00 0.00 41.59 2.10
2795 7780 4.404507 TTTTTCGCTAGAGCATGTGTTC 57.595 40.909 1.89 0.00 42.21 3.18
3215 8223 9.365150 ACACAAATGTAGAGCCTGAGCTTTCTA 62.365 40.741 0.00 0.00 43.96 2.10
3572 8607 4.649674 ACAACATCTGGTCCGACATACTAT 59.350 41.667 0.00 0.00 0.00 2.12
3588 8623 8.511321 TCACAATTTCAGGTACATTACAACATC 58.489 33.333 0.00 0.00 0.00 3.06
3597 8632 3.758554 GTGGCTCACAATTTCAGGTACAT 59.241 43.478 0.00 0.00 34.08 2.29
3855 8896 3.371965 ACCGGCATATAGTATTCCCGAT 58.628 45.455 0.00 0.00 38.04 4.18
4109 9150 5.051891 AGCTTGAAATGAGGAATTTGACG 57.948 39.130 0.00 0.00 38.64 4.35
4162 9203 2.599973 GCAAGCAAAAGGATAACATGCG 59.400 45.455 0.00 0.00 41.72 4.73
4362 9405 9.664332 GATTAATACCATATCAGAACTGCTCAT 57.336 33.333 0.00 0.00 0.00 2.90
4363 9406 8.097038 GGATTAATACCATATCAGAACTGCTCA 58.903 37.037 0.00 0.00 0.00 4.26
4530 9573 9.911788 ATTCATGAGACAATAACAACTCCTTAT 57.088 29.630 0.00 0.00 0.00 1.73
4634 9677 6.634805 TCATTGGCTTCTGTTAAAAACACAA 58.365 32.000 0.00 0.00 36.25 3.33
4635 9678 6.214191 TCATTGGCTTCTGTTAAAAACACA 57.786 33.333 0.00 0.00 36.25 3.72
4636 9679 7.277760 AGTTTCATTGGCTTCTGTTAAAAACAC 59.722 33.333 0.00 0.00 36.25 3.32
4662 9708 4.199310 GCTTAAGCAATGTACTGGATGGA 58.801 43.478 22.59 0.00 41.59 3.41
4663 9709 3.002656 CGCTTAAGCAATGTACTGGATGG 59.997 47.826 26.29 1.77 42.21 3.51
4664 9710 3.546815 GCGCTTAAGCAATGTACTGGATG 60.547 47.826 26.29 6.99 42.21 3.51
4696 9742 5.607477 TGGTACAGAAGTTTCTTTCGACAT 58.393 37.500 0.00 0.00 34.74 3.06
4697 9743 5.013568 TGGTACAGAAGTTTCTTTCGACA 57.986 39.130 0.00 0.00 34.74 4.35
4721 9767 3.643320 TCTCTTCCTCACTGCAGAAGAAA 59.357 43.478 23.35 6.54 43.92 2.52
4948 9994 8.660435 ACTACATGCAAATATATTGGACCTAGT 58.340 33.333 3.86 1.34 0.00 2.57
4987 10033 1.008538 CAACACCAGGCACGAAAGC 60.009 57.895 0.00 0.00 0.00 3.51
5072 10118 0.545171 ATCCACAGCCAGATGACCTG 59.455 55.000 0.00 0.00 42.55 4.00
5112 10176 7.894376 AATTGGTTTTGACTGAAATATGCAG 57.106 32.000 0.00 4.72 39.26 4.41
5130 10194 6.783708 TGTGGAGTTTTTGAAGTAATTGGT 57.216 33.333 0.00 0.00 0.00 3.67
5182 10246 5.011635 GTCCAAAACAGTTAATGTCCCCATT 59.988 40.000 0.00 0.00 43.00 3.16
5268 10332 5.126869 TCCAACTGCTGATTTTGTTTCTTCA 59.873 36.000 0.00 0.00 0.00 3.02
5323 10387 1.661112 GCTCGATCCAAACACTACTGC 59.339 52.381 0.00 0.00 0.00 4.40
5411 10503 6.058183 ACAAAGAGCATGATGATAACCCTAC 58.942 40.000 0.00 0.00 0.00 3.18
5753 10845 5.592688 GCCTCCCAAATAACAGCAGTAAATA 59.407 40.000 0.00 0.00 0.00 1.40
5764 10856 5.539955 ACCATAATCATGCCTCCCAAATAAC 59.460 40.000 0.00 0.00 0.00 1.89
5776 10868 8.217131 TCTCAATATATGCACCATAATCATGC 57.783 34.615 0.00 0.00 39.88 4.06
5801 10893 9.328845 GCAAATATCACATGGAAATTACCATTT 57.671 29.630 0.00 0.00 47.00 2.32
5856 10948 2.363680 ACTGACAGAGCCCTTGATATCG 59.636 50.000 10.08 0.00 0.00 2.92
5924 11016 8.445588 TGTATAGAATGAGACTACAGTATGGGA 58.554 37.037 0.00 0.00 43.62 4.37
5952 11046 2.035704 AGATAGAGCAAGACATCAGCCG 59.964 50.000 0.00 0.00 0.00 5.52
6052 11146 1.732809 GGCGAGAGGTAAAACAGAAGC 59.267 52.381 0.00 0.00 0.00 3.86
6250 11345 7.254227 TCATACTACAAAAACTGTGTGAACC 57.746 36.000 0.00 0.00 39.20 3.62
6256 11351 9.221775 GTGACTTTTCATACTACAAAAACTGTG 57.778 33.333 0.00 0.00 34.61 3.66
6366 11468 5.385198 AGCTTTTGACAAGGTTAAGGATCA 58.615 37.500 0.00 0.00 0.00 2.92
6376 11478 1.600413 GCACGGAAGCTTTTGACAAGG 60.600 52.381 0.00 0.00 0.00 3.61
6432 11534 0.888619 TGCTTCGAGGTCTACACAGG 59.111 55.000 0.00 0.00 0.00 4.00
6434 11536 1.813178 CTCTGCTTCGAGGTCTACACA 59.187 52.381 0.00 0.00 0.00 3.72
6539 11643 0.949105 AGCGTTCCAACCTAGCAACG 60.949 55.000 0.00 0.00 43.52 4.10
6645 11749 3.306166 CAGATTTTCGGTAGTAACGCCTG 59.694 47.826 1.72 1.67 0.00 4.85
6786 11892 4.588899 TCTGCATTTATACACTGCTTGGT 58.411 39.130 0.00 0.00 36.84 3.67
6869 11975 6.540438 ACTTCCCGTATATTTCTTCTGTCA 57.460 37.500 0.00 0.00 0.00 3.58
6993 12099 2.171003 AGCTTTGGTTTCCTGTATGCC 58.829 47.619 0.00 0.00 0.00 4.40
6999 12105 8.230472 AGAATATATCAAGCTTTGGTTTCCTG 57.770 34.615 0.00 0.00 0.00 3.86
7022 12128 2.365617 ACAGAGACAAGGAGCGAAAAGA 59.634 45.455 0.00 0.00 0.00 2.52
7023 12129 2.478134 CACAGAGACAAGGAGCGAAAAG 59.522 50.000 0.00 0.00 0.00 2.27
7028 12140 3.114558 GTCACAGAGACAAGGAGCG 57.885 57.895 0.00 0.00 46.77 5.03
7042 12155 4.516698 AGTTGTTCATTGATCCACAGTCAC 59.483 41.667 0.00 0.00 0.00 3.67
7043 12156 4.516321 CAGTTGTTCATTGATCCACAGTCA 59.484 41.667 0.00 0.00 0.00 3.41
7086 12201 3.196254 TGTCAACATAGATGCAGAGCTGA 59.804 43.478 0.85 0.00 0.00 4.26
7087 12202 3.528532 TGTCAACATAGATGCAGAGCTG 58.471 45.455 0.00 0.00 0.00 4.24
7088 12203 3.197333 ACTGTCAACATAGATGCAGAGCT 59.803 43.478 0.00 0.00 0.00 4.09
7089 12204 3.309138 CACTGTCAACATAGATGCAGAGC 59.691 47.826 0.00 0.00 0.00 4.09
7090 12205 3.309138 GCACTGTCAACATAGATGCAGAG 59.691 47.826 0.00 0.00 0.00 3.35
7091 12206 3.264947 GCACTGTCAACATAGATGCAGA 58.735 45.455 0.00 0.00 0.00 4.26
7092 12207 3.004862 TGCACTGTCAACATAGATGCAG 58.995 45.455 0.00 0.00 36.72 4.41
7330 12452 5.606505 TGTGTACAACAGCAGTTTCATCTA 58.393 37.500 0.00 0.00 35.28 1.98
7334 12456 3.247411 CGATGTGTACAACAGCAGTTTCA 59.753 43.478 0.00 0.00 45.81 2.69
7336 12458 3.202906 ACGATGTGTACAACAGCAGTTT 58.797 40.909 0.00 0.00 45.81 2.66
7363 12485 6.737118 TGTACACTTTCTATCACGTAACACA 58.263 36.000 0.00 0.00 0.00 3.72
7382 12512 4.083324 GCTCATAGCAGCAGTTTTTGTACA 60.083 41.667 0.00 0.00 41.89 2.90
7398 12528 3.119291 GTTCATCTGACCGTGCTCATAG 58.881 50.000 0.00 0.00 0.00 2.23
7460 12631 0.604578 GGACTGCCGTGTACAAGGTA 59.395 55.000 25.77 21.43 32.29 3.08
7537 12709 1.997874 AGGGGATCTTCTGCGGCTT 60.998 57.895 0.00 0.00 0.00 4.35
7555 12727 0.592637 CTGTCCAGCACGATTTTGCA 59.407 50.000 0.00 0.00 45.62 4.08
7606 12780 0.106149 GGGCCGTCCGATTCAATACT 59.894 55.000 0.00 0.00 0.00 2.12
7627 12801 1.852626 CCCTCCCACAACCCTCCTT 60.853 63.158 0.00 0.00 0.00 3.36
7628 12802 2.204151 CCCTCCCACAACCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
7635 12809 2.852075 ACCGCTTCCCTCCCACAA 60.852 61.111 0.00 0.00 0.00 3.33
7690 12864 3.458189 CTCGGCTTATAAACTGGTCTGG 58.542 50.000 0.00 0.00 0.00 3.86
7738 12912 4.269123 TCGTTCCAATTTTATCGGATGTCG 59.731 41.667 0.00 0.00 40.90 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.