Multiple sequence alignment - TraesCS1D01G161200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G161200 chr1D 100.000 5827 0 0 1 5827 228073567 228067741 0.000000e+00 10761.0
1 TraesCS1D01G161200 chr1D 96.230 2891 55 9 2393 5247 208086699 208089571 0.000000e+00 4686.0
2 TraesCS1D01G161200 chr1D 97.728 2377 29 6 1 2367 208084345 208086706 0.000000e+00 4067.0
3 TraesCS1D01G161200 chr1D 93.824 421 15 3 5408 5827 208089564 208089974 1.780000e-174 623.0
4 TraesCS1D01G161200 chr1D 95.541 157 6 1 5249 5404 12318526 12318370 3.490000e-62 250.0
5 TraesCS1D01G161200 chr1D 91.489 94 5 2 2040 2133 4974619 4974709 6.130000e-25 126.0
6 TraesCS1D01G161200 chr1B 96.882 5292 105 17 1 5247 327580109 327574833 0.000000e+00 8804.0
7 TraesCS1D01G161200 chr1B 93.349 421 12 3 5408 5827 327574840 327574435 4.990000e-170 608.0
8 TraesCS1D01G161200 chr1B 96.250 160 5 1 5249 5407 17384723 17384564 1.610000e-65 261.0
9 TraesCS1D01G161200 chr1A 95.482 3187 75 12 2129 5247 295587929 295584744 0.000000e+00 5024.0
10 TraesCS1D01G161200 chr1A 93.770 1541 52 18 375 1901 295589643 295588133 0.000000e+00 2274.0
11 TraesCS1D01G161200 chr1A 95.047 424 8 5 5408 5827 295584751 295584337 0.000000e+00 654.0
12 TraesCS1D01G161200 chr1A 96.561 378 13 0 1 378 295590138 295589761 1.380000e-175 627.0
13 TraesCS1D01G161200 chr1A 100.000 52 0 0 1896 1947 295587978 295587927 4.810000e-16 97.1
14 TraesCS1D01G161200 chr7D 95.625 160 6 1 5249 5407 600764282 600764441 7.490000e-64 255.0
15 TraesCS1D01G161200 chr5B 95.625 160 6 1 5249 5407 655620547 655620706 7.490000e-64 255.0
16 TraesCS1D01G161200 chr5B 89.899 99 7 1 2040 2138 115054068 115053973 2.200000e-24 124.0
17 TraesCS1D01G161200 chr2D 93.976 166 9 1 5245 5409 391461638 391461473 3.490000e-62 250.0
18 TraesCS1D01G161200 chr2D 94.969 159 7 1 5249 5406 45540257 45540099 1.250000e-61 248.0
19 TraesCS1D01G161200 chr2D 93.373 166 9 2 5244 5407 422564122 422563957 1.620000e-60 244.0
20 TraesCS1D01G161200 chr2D 95.506 89 3 1 2041 2128 571183282 571183370 2.190000e-29 141.0
21 TraesCS1D01G161200 chr2D 91.304 92 6 2 1948 2037 448140500 448140591 2.200000e-24 124.0
22 TraesCS1D01G161200 chr2B 94.410 161 7 2 5249 5408 397938602 397938761 4.510000e-61 246.0
23 TraesCS1D01G161200 chr2B 93.023 86 5 1 1953 2037 527885906 527885991 2.200000e-24 124.0
24 TraesCS1D01G161200 chr4B 91.860 172 11 3 5242 5411 49076906 49077076 2.710000e-58 237.0
25 TraesCS1D01G161200 chr4B 83.696 92 5 3 1947 2037 140585925 140586007 1.740000e-10 78.7
26 TraesCS1D01G161200 chr5D 91.489 94 5 1 2040 2133 449674924 449675014 6.130000e-25 126.0
27 TraesCS1D01G161200 chr3D 91.398 93 5 1 2040 2132 611923112 611923201 2.200000e-24 124.0
28 TraesCS1D01G161200 chr2A 91.398 93 5 1 2040 2132 310535727 310535638 2.200000e-24 124.0
29 TraesCS1D01G161200 chr3B 90.323 93 7 2 1946 2037 732862201 732862292 2.850000e-23 121.0
30 TraesCS1D01G161200 chr5A 87.379 103 10 1 2040 2142 253612508 253612607 1.330000e-21 115.0
31 TraesCS1D01G161200 chr6D 83.871 93 12 3 1947 2037 27788782 27788691 1.040000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G161200 chr1D 228067741 228073567 5826 True 10761.000000 10761 100.000000 1 5827 1 chr1D.!!$R2 5826
1 TraesCS1D01G161200 chr1D 208084345 208089974 5629 False 3125.333333 4686 95.927333 1 5827 3 chr1D.!!$F2 5826
2 TraesCS1D01G161200 chr1B 327574435 327580109 5674 True 4706.000000 8804 95.115500 1 5827 2 chr1B.!!$R2 5826
3 TraesCS1D01G161200 chr1A 295584337 295590138 5801 True 1735.220000 5024 96.172000 1 5827 5 chr1A.!!$R1 5826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 1.064166 AGCTGCTGCAAGTCCCATATT 60.064 47.619 18.42 0.0 42.74 1.28 F
585 717 2.086869 CACTGGATTCGCACTCCAAAT 58.913 47.619 1.10 0.0 42.12 2.32 F
2379 2711 0.321210 CACCACCGCTACCACATGAA 60.321 55.000 0.00 0.0 0.00 2.57 F
3536 3907 0.257039 GACCAGCCAATGATCCACCT 59.743 55.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2372 2.305928 TGCAGCTTTTCTACTTTGGCA 58.694 42.857 0.00 0.00 0.00 4.92 R
2395 2727 1.315690 GGATGATCCACATGCAGGTG 58.684 55.000 24.06 24.06 44.79 4.00 R
3559 3957 0.846693 GGCAGGTCTCCCATATGGTT 59.153 55.000 20.46 0.00 34.77 3.67 R
5383 5818 0.036306 GATGTCAACCGGGTCCTGTT 59.964 55.000 6.32 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 1.064166 AGCTGCTGCAAGTCCCATATT 60.064 47.619 18.42 0.00 42.74 1.28
186 187 4.263243 GCAAGTCCCATATTCTAGGATGCT 60.263 45.833 0.00 0.00 34.35 3.79
216 218 7.560796 TTTTCCTTTTTAGGGATATTTGGCA 57.439 32.000 0.00 0.00 32.41 4.92
451 574 5.385509 TTTCCCTTGCAAAGCTATGTTAC 57.614 39.130 0.00 0.00 44.44 2.50
476 599 7.064609 ACGATGTTAAGTCATTTATCACCACTG 59.935 37.037 0.00 0.00 0.00 3.66
480 603 4.019792 AGTCATTTATCACCACTGTGCA 57.980 40.909 1.29 0.00 42.46 4.57
481 604 4.592942 AGTCATTTATCACCACTGTGCAT 58.407 39.130 1.29 0.00 42.46 3.96
482 605 5.744171 AGTCATTTATCACCACTGTGCATA 58.256 37.500 1.29 0.00 42.46 3.14
574 706 9.277783 ACTATGACTAATTATTGCACTGGATTC 57.722 33.333 0.00 0.00 0.00 2.52
585 717 2.086869 CACTGGATTCGCACTCCAAAT 58.913 47.619 1.10 0.00 42.12 2.32
654 786 4.024725 CACCATGTTTCTTTGTGCCAATTG 60.025 41.667 0.00 0.00 0.00 2.32
1769 1906 7.066284 TGCTTCTGTTTAGCTTAGATTTGGATC 59.934 37.037 0.00 0.00 39.38 3.36
2037 2334 4.662145 CTCCTAAATAGGTGCTTTTTGCG 58.338 43.478 6.39 0.00 44.02 4.85
2131 2429 1.474855 CCCAAACAAACAGGGCCAAAG 60.475 52.381 6.18 0.00 35.44 2.77
2370 2702 2.682494 GAGTCCCCACCACCGCTA 60.682 66.667 0.00 0.00 0.00 4.26
2371 2703 3.001406 AGTCCCCACCACCGCTAC 61.001 66.667 0.00 0.00 0.00 3.58
2372 2704 4.091939 GTCCCCACCACCGCTACC 62.092 72.222 0.00 0.00 0.00 3.18
2373 2705 4.642488 TCCCCACCACCGCTACCA 62.642 66.667 0.00 0.00 0.00 3.25
2374 2706 4.404098 CCCCACCACCGCTACCAC 62.404 72.222 0.00 0.00 0.00 4.16
2375 2707 3.632080 CCCACCACCGCTACCACA 61.632 66.667 0.00 0.00 0.00 4.17
2376 2708 2.668632 CCACCACCGCTACCACAT 59.331 61.111 0.00 0.00 0.00 3.21
2377 2709 1.745115 CCACCACCGCTACCACATG 60.745 63.158 0.00 0.00 0.00 3.21
2378 2710 1.295101 CACCACCGCTACCACATGA 59.705 57.895 0.00 0.00 0.00 3.07
2379 2711 0.321210 CACCACCGCTACCACATGAA 60.321 55.000 0.00 0.00 0.00 2.57
2380 2712 0.398696 ACCACCGCTACCACATGAAA 59.601 50.000 0.00 0.00 0.00 2.69
2381 2713 1.202830 ACCACCGCTACCACATGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
2382 2714 2.091541 CCACCGCTACCACATGAAAAT 58.908 47.619 0.00 0.00 0.00 1.82
2383 2715 2.097466 CCACCGCTACCACATGAAAATC 59.903 50.000 0.00 0.00 0.00 2.17
2384 2716 2.746904 CACCGCTACCACATGAAAATCA 59.253 45.455 0.00 0.00 0.00 2.57
2385 2717 2.747446 ACCGCTACCACATGAAAATCAC 59.253 45.455 0.00 0.00 0.00 3.06
2386 2718 2.746904 CCGCTACCACATGAAAATCACA 59.253 45.455 0.00 0.00 0.00 3.58
2387 2719 3.378112 CCGCTACCACATGAAAATCACAT 59.622 43.478 0.00 0.00 0.00 3.21
2388 2720 4.345288 CGCTACCACATGAAAATCACATG 58.655 43.478 0.00 0.00 46.96 3.21
3107 3451 8.477984 TGTTTCAATATCTGCCTTTTTAATGC 57.522 30.769 0.00 0.00 0.00 3.56
3536 3907 0.257039 GACCAGCCAATGATCCACCT 59.743 55.000 0.00 0.00 0.00 4.00
3559 3957 1.634973 TGGAAGACCAGCCAATGATGA 59.365 47.619 0.00 0.00 41.77 2.92
3950 4348 7.653311 GGAAATTCCAATGCTTATGATTACACC 59.347 37.037 7.23 0.00 36.28 4.16
4292 4727 4.464008 TCAAATTTCACTCTTCAGGCTGT 58.536 39.130 15.27 0.00 0.00 4.40
4569 5004 1.293924 GACTGCGTCATCCATTGAGG 58.706 55.000 4.20 0.00 42.01 3.86
4672 5107 4.985538 AGAATGAAGTTACTTGAAGCCCA 58.014 39.130 0.93 0.00 0.00 5.36
4684 5119 1.428912 TGAAGCCCATCCTGGTTCTTT 59.571 47.619 0.00 0.00 40.10 2.52
4984 5419 8.736244 GTTATTTCCAAGGATGTACTGCTAAAA 58.264 33.333 0.00 0.00 0.00 1.52
5010 5445 8.188799 AGTGCTTGTTTTCTTAGTCTTTTTACC 58.811 33.333 0.00 0.00 0.00 2.85
5034 5469 6.423182 CCCCCTTTTGAGTGAAATACATCTA 58.577 40.000 0.00 0.00 0.00 1.98
5099 5534 2.242043 CCTGGATGGTTGAAGCTGTTT 58.758 47.619 0.00 0.00 0.00 2.83
5237 5672 7.500892 TCCAACTTAGAATTCTGTTTGTAGCAA 59.499 33.333 18.47 0.00 0.00 3.91
5247 5682 6.254281 TCTGTTTGTAGCAAGAATTAAGCC 57.746 37.500 0.00 0.00 0.00 4.35
5248 5683 5.767665 TCTGTTTGTAGCAAGAATTAAGCCA 59.232 36.000 0.00 0.00 0.00 4.75
5249 5684 6.012658 TGTTTGTAGCAAGAATTAAGCCAG 57.987 37.500 0.00 0.00 0.00 4.85
5250 5685 5.048083 TGTTTGTAGCAAGAATTAAGCCAGG 60.048 40.000 0.00 0.00 0.00 4.45
5251 5686 3.620488 TGTAGCAAGAATTAAGCCAGGG 58.380 45.455 0.00 0.00 0.00 4.45
5252 5687 3.265737 TGTAGCAAGAATTAAGCCAGGGA 59.734 43.478 0.00 0.00 0.00 4.20
5253 5688 3.677156 AGCAAGAATTAAGCCAGGGAT 57.323 42.857 0.00 0.00 0.00 3.85
5254 5689 3.294214 AGCAAGAATTAAGCCAGGGATG 58.706 45.455 0.00 0.00 0.00 3.51
5255 5690 3.026694 GCAAGAATTAAGCCAGGGATGT 58.973 45.455 0.00 0.00 0.00 3.06
5256 5691 4.079787 AGCAAGAATTAAGCCAGGGATGTA 60.080 41.667 0.00 0.00 0.00 2.29
5257 5692 4.644685 GCAAGAATTAAGCCAGGGATGTAA 59.355 41.667 0.00 0.00 0.00 2.41
5258 5693 5.221126 GCAAGAATTAAGCCAGGGATGTAAG 60.221 44.000 0.00 0.00 0.00 2.34
5259 5694 5.717119 AGAATTAAGCCAGGGATGTAAGT 57.283 39.130 0.00 0.00 0.00 2.24
5260 5695 5.440610 AGAATTAAGCCAGGGATGTAAGTG 58.559 41.667 0.00 0.00 0.00 3.16
5261 5696 3.644966 TTAAGCCAGGGATGTAAGTGG 57.355 47.619 0.00 0.00 0.00 4.00
5264 5699 3.976704 CCAGGGATGTAAGTGGCAA 57.023 52.632 0.00 0.00 0.00 4.52
5265 5700 2.214376 CCAGGGATGTAAGTGGCAAA 57.786 50.000 0.00 0.00 0.00 3.68
5266 5701 2.738743 CCAGGGATGTAAGTGGCAAAT 58.261 47.619 0.00 0.00 0.00 2.32
5267 5702 3.897239 CCAGGGATGTAAGTGGCAAATA 58.103 45.455 0.00 0.00 0.00 1.40
5268 5703 4.277476 CCAGGGATGTAAGTGGCAAATAA 58.723 43.478 0.00 0.00 0.00 1.40
5269 5704 4.709397 CCAGGGATGTAAGTGGCAAATAAA 59.291 41.667 0.00 0.00 0.00 1.40
5270 5705 5.363580 CCAGGGATGTAAGTGGCAAATAAAT 59.636 40.000 0.00 0.00 0.00 1.40
5271 5706 6.275335 CAGGGATGTAAGTGGCAAATAAATG 58.725 40.000 0.00 0.00 0.00 2.32
5272 5707 5.363580 AGGGATGTAAGTGGCAAATAAATGG 59.636 40.000 0.00 0.00 0.00 3.16
5273 5708 5.049828 GGATGTAAGTGGCAAATAAATGGC 58.950 41.667 0.00 0.00 45.44 4.40
5278 5713 3.250220 GGCAAATAAATGGCGTCCG 57.750 52.632 0.00 0.00 36.07 4.79
5279 5714 0.869880 GGCAAATAAATGGCGTCCGC 60.870 55.000 2.45 2.45 36.07 5.54
5280 5715 0.179150 GCAAATAAATGGCGTCCGCA 60.179 50.000 14.19 0.24 44.11 5.69
5281 5716 1.535860 GCAAATAAATGGCGTCCGCAT 60.536 47.619 14.19 2.69 44.11 4.73
5282 5717 2.384382 CAAATAAATGGCGTCCGCATC 58.616 47.619 14.19 0.00 44.11 3.91
5283 5718 0.951558 AATAAATGGCGTCCGCATCC 59.048 50.000 14.19 0.00 44.11 3.51
5284 5719 0.889186 ATAAATGGCGTCCGCATCCC 60.889 55.000 14.19 0.00 44.11 3.85
5289 5724 2.509786 GCGTCCGCATCCCGTTTA 60.510 61.111 6.82 0.00 41.49 2.01
5290 5725 2.522638 GCGTCCGCATCCCGTTTAG 61.523 63.158 6.82 0.00 41.49 1.85
5291 5726 1.153706 CGTCCGCATCCCGTTTAGT 60.154 57.895 0.00 0.00 34.38 2.24
5292 5727 0.738412 CGTCCGCATCCCGTTTAGTT 60.738 55.000 0.00 0.00 34.38 2.24
5293 5728 1.469595 CGTCCGCATCCCGTTTAGTTA 60.470 52.381 0.00 0.00 34.38 2.24
5294 5729 2.199236 GTCCGCATCCCGTTTAGTTAG 58.801 52.381 0.00 0.00 34.38 2.34
5295 5730 1.826720 TCCGCATCCCGTTTAGTTAGT 59.173 47.619 0.00 0.00 34.38 2.24
5296 5731 2.234414 TCCGCATCCCGTTTAGTTAGTT 59.766 45.455 0.00 0.00 34.38 2.24
5297 5732 3.004862 CCGCATCCCGTTTAGTTAGTTT 58.995 45.455 0.00 0.00 34.38 2.66
5298 5733 3.437741 CCGCATCCCGTTTAGTTAGTTTT 59.562 43.478 0.00 0.00 34.38 2.43
5299 5734 4.083164 CCGCATCCCGTTTAGTTAGTTTTT 60.083 41.667 0.00 0.00 34.38 1.94
5300 5735 4.849383 CGCATCCCGTTTAGTTAGTTTTTG 59.151 41.667 0.00 0.00 0.00 2.44
5301 5736 4.619760 GCATCCCGTTTAGTTAGTTTTTGC 59.380 41.667 0.00 0.00 0.00 3.68
5302 5737 5.564063 GCATCCCGTTTAGTTAGTTTTTGCT 60.564 40.000 0.00 0.00 0.00 3.91
5303 5738 6.348704 GCATCCCGTTTAGTTAGTTTTTGCTA 60.349 38.462 0.00 0.00 0.00 3.49
5304 5739 6.790285 TCCCGTTTAGTTAGTTTTTGCTAG 57.210 37.500 0.00 0.00 0.00 3.42
5305 5740 5.179929 TCCCGTTTAGTTAGTTTTTGCTAGC 59.820 40.000 8.10 8.10 0.00 3.42
5306 5741 5.180680 CCCGTTTAGTTAGTTTTTGCTAGCT 59.819 40.000 17.23 0.00 36.65 3.32
5307 5742 6.293790 CCCGTTTAGTTAGTTTTTGCTAGCTT 60.294 38.462 17.23 0.00 34.92 3.74
5308 5743 6.577427 CCGTTTAGTTAGTTTTTGCTAGCTTG 59.423 38.462 17.23 0.00 34.92 4.01
5309 5744 7.349711 CGTTTAGTTAGTTTTTGCTAGCTTGA 58.650 34.615 17.23 0.00 34.92 3.02
5310 5745 7.853929 CGTTTAGTTAGTTTTTGCTAGCTTGAA 59.146 33.333 17.23 5.50 34.92 2.69
5311 5746 9.511144 GTTTAGTTAGTTTTTGCTAGCTTGAAA 57.489 29.630 17.23 11.25 34.92 2.69
5315 5750 9.249457 AGTTAGTTTTTGCTAGCTTGAAAATTC 57.751 29.630 17.23 10.21 30.04 2.17
5316 5751 9.030301 GTTAGTTTTTGCTAGCTTGAAAATTCA 57.970 29.630 17.23 6.56 34.92 2.57
5317 5752 9.762933 TTAGTTTTTGCTAGCTTGAAAATTCAT 57.237 25.926 17.23 10.01 37.00 2.57
5318 5753 8.667076 AGTTTTTGCTAGCTTGAAAATTCATT 57.333 26.923 17.23 0.00 37.00 2.57
5319 5754 9.112725 AGTTTTTGCTAGCTTGAAAATTCATTT 57.887 25.926 17.23 2.59 37.00 2.32
5320 5755 9.720667 GTTTTTGCTAGCTTGAAAATTCATTTT 57.279 25.926 17.23 0.00 42.24 1.82
5369 5804 9.685276 TTTGAATTGACATATCATAAGTGGACT 57.315 29.630 0.00 0.00 33.85 3.85
5370 5805 9.685276 TTGAATTGACATATCATAAGTGGACTT 57.315 29.630 0.00 0.00 39.85 3.01
5371 5806 9.685276 TGAATTGACATATCATAAGTGGACTTT 57.315 29.630 0.00 0.00 37.40 2.66
5376 5811 9.093970 TGACATATCATAAGTGGACTTTAAACG 57.906 33.333 0.00 0.00 37.40 3.60
5377 5812 8.433421 ACATATCATAAGTGGACTTTAAACGG 57.567 34.615 0.00 0.00 37.40 4.44
5378 5813 7.497909 ACATATCATAAGTGGACTTTAAACGGG 59.502 37.037 0.00 0.00 37.40 5.28
5379 5814 5.486735 TCATAAGTGGACTTTAAACGGGA 57.513 39.130 0.00 0.00 37.40 5.14
5380 5815 6.057321 TCATAAGTGGACTTTAAACGGGAT 57.943 37.500 0.00 0.00 37.40 3.85
5381 5816 6.478129 TCATAAGTGGACTTTAAACGGGATT 58.522 36.000 0.00 0.00 37.40 3.01
5382 5817 7.622713 TCATAAGTGGACTTTAAACGGGATTA 58.377 34.615 0.00 0.00 37.40 1.75
5383 5818 8.102047 TCATAAGTGGACTTTAAACGGGATTAA 58.898 33.333 0.00 0.00 37.40 1.40
5384 5819 8.732531 CATAAGTGGACTTTAAACGGGATTAAA 58.267 33.333 0.00 0.00 37.40 1.52
5385 5820 6.564709 AGTGGACTTTAAACGGGATTAAAC 57.435 37.500 0.00 0.00 32.77 2.01
5386 5821 6.063404 AGTGGACTTTAAACGGGATTAAACA 58.937 36.000 0.00 0.00 32.77 2.83
5387 5822 6.206048 AGTGGACTTTAAACGGGATTAAACAG 59.794 38.462 0.00 0.00 32.77 3.16
5388 5823 5.474189 TGGACTTTAAACGGGATTAAACAGG 59.526 40.000 0.00 0.00 32.77 4.00
5389 5824 5.706833 GGACTTTAAACGGGATTAAACAGGA 59.293 40.000 0.00 0.00 32.77 3.86
5390 5825 6.348786 GGACTTTAAACGGGATTAAACAGGAC 60.349 42.308 0.00 0.00 32.77 3.85
5391 5826 5.474532 ACTTTAAACGGGATTAAACAGGACC 59.525 40.000 0.00 0.00 32.77 4.46
5392 5827 2.502142 AACGGGATTAAACAGGACCC 57.498 50.000 0.00 0.00 37.42 4.46
5394 5829 3.489391 GGGATTAAACAGGACCCGG 57.511 57.895 0.00 0.00 0.00 5.73
5395 5830 0.622136 GGGATTAAACAGGACCCGGT 59.378 55.000 0.00 0.00 0.00 5.28
5396 5831 1.005097 GGGATTAAACAGGACCCGGTT 59.995 52.381 0.00 0.00 35.99 4.44
5397 5832 2.089201 GGATTAAACAGGACCCGGTTG 58.911 52.381 0.00 0.00 34.79 3.77
5398 5833 2.290450 GGATTAAACAGGACCCGGTTGA 60.290 50.000 0.00 0.00 34.79 3.18
5399 5834 2.259266 TTAAACAGGACCCGGTTGAC 57.741 50.000 0.00 0.00 34.79 3.18
5400 5835 1.129917 TAAACAGGACCCGGTTGACA 58.870 50.000 0.00 0.00 34.79 3.58
5401 5836 0.476771 AAACAGGACCCGGTTGACAT 59.523 50.000 0.00 0.00 34.79 3.06
5402 5837 0.036306 AACAGGACCCGGTTGACATC 59.964 55.000 0.00 0.00 33.42 3.06
5403 5838 1.078426 CAGGACCCGGTTGACATCC 60.078 63.158 0.00 0.00 0.00 3.51
5404 5839 2.271173 GGACCCGGTTGACATCCC 59.729 66.667 0.00 0.00 0.00 3.85
5405 5840 2.298661 GGACCCGGTTGACATCCCT 61.299 63.158 0.00 0.00 0.00 4.20
5406 5841 0.979187 GGACCCGGTTGACATCCCTA 60.979 60.000 0.00 0.00 0.00 3.53
5407 5842 0.906775 GACCCGGTTGACATCCCTAA 59.093 55.000 0.00 0.00 0.00 2.69
5408 5843 1.279846 GACCCGGTTGACATCCCTAAA 59.720 52.381 0.00 0.00 0.00 1.85
5409 5844 1.920351 ACCCGGTTGACATCCCTAAAT 59.080 47.619 0.00 0.00 0.00 1.40
5410 5845 2.310647 ACCCGGTTGACATCCCTAAATT 59.689 45.455 0.00 0.00 0.00 1.82
5411 5846 3.524380 ACCCGGTTGACATCCCTAAATTA 59.476 43.478 0.00 0.00 0.00 1.40
5412 5847 4.018233 ACCCGGTTGACATCCCTAAATTAA 60.018 41.667 0.00 0.00 0.00 1.40
5413 5848 4.578928 CCCGGTTGACATCCCTAAATTAAG 59.421 45.833 0.00 0.00 0.00 1.85
5414 5849 4.036380 CCGGTTGACATCCCTAAATTAAGC 59.964 45.833 0.00 0.00 0.00 3.09
5415 5850 4.881850 CGGTTGACATCCCTAAATTAAGCT 59.118 41.667 0.00 0.00 0.00 3.74
5416 5851 6.053005 CGGTTGACATCCCTAAATTAAGCTA 58.947 40.000 0.00 0.00 0.00 3.32
5417 5852 6.710744 CGGTTGACATCCCTAAATTAAGCTAT 59.289 38.462 0.00 0.00 0.00 2.97
5418 5853 7.095187 CGGTTGACATCCCTAAATTAAGCTATC 60.095 40.741 0.00 0.00 0.00 2.08
5433 5868 7.637631 TTAAGCTATCATTGGTTATTGCACA 57.362 32.000 0.00 0.00 0.00 4.57
5518 5953 3.874392 ATGCTTTGTGATTTGCTACCC 57.126 42.857 0.00 0.00 0.00 3.69
5524 5959 5.050159 GCTTTGTGATTTGCTACCCAAAAAG 60.050 40.000 0.00 0.00 45.80 2.27
5664 6102 0.035739 TGGGTTTCTAGGGCGAACAC 59.964 55.000 0.00 0.00 0.00 3.32
5745 6184 4.324874 CCATCATCTTGAACCCTTTCTCCT 60.325 45.833 0.00 0.00 32.36 3.69
5773 6212 4.647424 TTTGCAAAACGAATCTGAAGGT 57.353 36.364 10.02 0.00 0.00 3.50
5774 6213 5.759506 TTTGCAAAACGAATCTGAAGGTA 57.240 34.783 10.02 0.00 0.00 3.08
5775 6214 5.356882 TTGCAAAACGAATCTGAAGGTAG 57.643 39.130 0.00 0.00 0.00 3.18
5776 6215 4.637276 TGCAAAACGAATCTGAAGGTAGA 58.363 39.130 0.00 0.00 0.00 2.59
5777 6216 4.451096 TGCAAAACGAATCTGAAGGTAGAC 59.549 41.667 0.00 0.00 0.00 2.59
5778 6217 4.451096 GCAAAACGAATCTGAAGGTAGACA 59.549 41.667 0.00 0.00 0.00 3.41
5779 6218 5.614887 GCAAAACGAATCTGAAGGTAGACAC 60.615 44.000 0.00 0.00 0.00 3.67
5809 6248 3.318275 TCATAAGGCTGCCTAAGAGTACG 59.682 47.826 23.69 2.59 31.13 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 203 8.224025 TGAGTGAATAATGCCAAATATCCCTAA 58.776 33.333 0.00 0.00 0.00 2.69
216 218 5.350504 AGCTACAGTGCTGAGTGAATAAT 57.649 39.130 6.17 0.00 42.33 1.28
408 531 7.170828 GGGAAAGGTAAAACTGCATAAAACTTG 59.829 37.037 0.00 0.00 0.00 3.16
451 574 7.064609 ACAGTGGTGATAAATGACTTAACATCG 59.935 37.037 0.00 0.00 28.36 3.84
476 599 5.684626 GCAAGCACTTAAAGATGATATGCAC 59.315 40.000 0.00 0.00 34.03 4.57
480 603 8.284945 TGAAAGCAAGCACTTAAAGATGATAT 57.715 30.769 0.00 0.00 0.00 1.63
481 604 7.686438 TGAAAGCAAGCACTTAAAGATGATA 57.314 32.000 0.00 0.00 0.00 2.15
482 605 6.579666 TGAAAGCAAGCACTTAAAGATGAT 57.420 33.333 0.00 0.00 0.00 2.45
561 693 1.089920 GAGTGCGAATCCAGTGCAAT 58.910 50.000 0.00 0.00 40.83 3.56
574 706 1.247567 ACTTGGGAATTTGGAGTGCG 58.752 50.000 0.00 0.00 0.00 5.34
585 717 4.837093 ATCAATCGGAAGTACTTGGGAA 57.163 40.909 14.14 0.00 0.00 3.97
654 786 6.494893 TCAAATGAAACACTACCACTATGC 57.505 37.500 0.00 0.00 0.00 3.14
2035 2332 3.041508 CTCCTAAATAGGGGCTTACGC 57.958 52.381 6.64 0.00 43.79 4.42
2074 2372 2.305928 TGCAGCTTTTCTACTTTGGCA 58.694 42.857 0.00 0.00 0.00 4.92
2365 2697 2.746904 TGTGATTTTCATGTGGTAGCGG 59.253 45.455 0.00 0.00 0.00 5.52
2366 2698 4.345288 CATGTGATTTTCATGTGGTAGCG 58.655 43.478 0.00 0.00 38.17 4.26
2393 2725 1.674441 GATGATCCACATGCAGGTGTG 59.326 52.381 27.83 20.17 46.98 3.82
2394 2726 1.409241 GGATGATCCACATGCAGGTGT 60.409 52.381 27.83 12.42 44.79 4.16
2395 2727 1.315690 GGATGATCCACATGCAGGTG 58.684 55.000 24.06 24.06 44.79 4.00
2396 2728 3.815133 GGATGATCCACATGCAGGT 57.185 52.632 6.60 0.00 44.79 4.00
3536 3907 4.079844 TCATCATTGGCTGGTCTTCCATAA 60.080 41.667 0.00 0.00 43.43 1.90
3554 3925 3.392285 CAGGTCTCCCATATGGTTCATCA 59.608 47.826 20.46 0.00 34.77 3.07
3559 3957 0.846693 GGCAGGTCTCCCATATGGTT 59.153 55.000 20.46 0.00 34.77 3.67
3950 4348 3.247442 TGACGCATTAAACTGTACCTCG 58.753 45.455 0.00 0.00 0.00 4.63
4267 4702 6.716628 ACAGCCTGAAGAGTGAAATTTGAATA 59.283 34.615 0.00 0.00 0.00 1.75
4292 4727 2.190313 GTCCATGCATCTGCCCGA 59.810 61.111 0.00 0.00 41.18 5.14
4569 5004 8.000780 ACAGGGAATAAAATAATGAAGACTGC 57.999 34.615 0.00 0.00 0.00 4.40
4610 5045 8.563732 TGAGATCGAGAACTTATACATGAGAAG 58.436 37.037 0.00 2.05 32.30 2.85
4672 5107 4.017222 TGATGGATTCCAAAGAACCAGGAT 60.017 41.667 9.98 0.00 36.95 3.24
4984 5419 8.188799 GGTAAAAAGACTAAGAAAACAAGCACT 58.811 33.333 0.00 0.00 0.00 4.40
5010 5445 5.264395 AGATGTATTTCACTCAAAAGGGGG 58.736 41.667 0.00 0.00 0.00 5.40
5237 5672 5.440610 CACTTACATCCCTGGCTTAATTCT 58.559 41.667 0.00 0.00 0.00 2.40
5247 5682 5.913137 TTTATTTGCCACTTACATCCCTG 57.087 39.130 0.00 0.00 0.00 4.45
5248 5683 5.363580 CCATTTATTTGCCACTTACATCCCT 59.636 40.000 0.00 0.00 0.00 4.20
5249 5684 5.600696 CCATTTATTTGCCACTTACATCCC 58.399 41.667 0.00 0.00 0.00 3.85
5250 5685 5.049828 GCCATTTATTTGCCACTTACATCC 58.950 41.667 0.00 0.00 0.00 3.51
5251 5686 4.739716 CGCCATTTATTTGCCACTTACATC 59.260 41.667 0.00 0.00 0.00 3.06
5252 5687 4.159506 ACGCCATTTATTTGCCACTTACAT 59.840 37.500 0.00 0.00 0.00 2.29
5253 5688 3.508012 ACGCCATTTATTTGCCACTTACA 59.492 39.130 0.00 0.00 0.00 2.41
5254 5689 4.102649 GACGCCATTTATTTGCCACTTAC 58.897 43.478 0.00 0.00 0.00 2.34
5255 5690 3.129638 GGACGCCATTTATTTGCCACTTA 59.870 43.478 0.00 0.00 0.00 2.24
5256 5691 2.094234 GGACGCCATTTATTTGCCACTT 60.094 45.455 0.00 0.00 0.00 3.16
5257 5692 1.476488 GGACGCCATTTATTTGCCACT 59.524 47.619 0.00 0.00 0.00 4.00
5258 5693 1.797348 CGGACGCCATTTATTTGCCAC 60.797 52.381 0.00 0.00 0.00 5.01
5259 5694 0.453793 CGGACGCCATTTATTTGCCA 59.546 50.000 0.00 0.00 0.00 4.92
5260 5695 0.869880 GCGGACGCCATTTATTTGCC 60.870 55.000 5.20 0.00 34.56 4.52
5261 5696 0.179150 TGCGGACGCCATTTATTTGC 60.179 50.000 14.61 0.00 41.09 3.68
5262 5697 2.384382 GATGCGGACGCCATTTATTTG 58.616 47.619 14.61 0.00 41.09 2.32
5263 5698 1.336755 GGATGCGGACGCCATTTATTT 59.663 47.619 14.61 0.00 41.09 1.40
5264 5699 0.951558 GGATGCGGACGCCATTTATT 59.048 50.000 14.61 0.00 41.09 1.40
5265 5700 0.889186 GGGATGCGGACGCCATTTAT 60.889 55.000 14.61 0.00 41.09 1.40
5266 5701 1.525077 GGGATGCGGACGCCATTTA 60.525 57.895 14.61 0.00 41.09 1.40
5267 5702 2.828549 GGGATGCGGACGCCATTT 60.829 61.111 14.61 0.00 41.09 2.32
5272 5707 2.509786 TAAACGGGATGCGGACGC 60.510 61.111 10.13 10.13 42.35 5.19
5273 5708 0.738412 AACTAAACGGGATGCGGACG 60.738 55.000 0.00 0.00 0.00 4.79
5274 5709 2.199236 CTAACTAAACGGGATGCGGAC 58.801 52.381 0.00 0.00 0.00 4.79
5275 5710 1.826720 ACTAACTAAACGGGATGCGGA 59.173 47.619 0.00 0.00 0.00 5.54
5276 5711 2.304751 ACTAACTAAACGGGATGCGG 57.695 50.000 0.00 0.00 0.00 5.69
5277 5712 4.673534 AAAACTAACTAAACGGGATGCG 57.326 40.909 0.00 0.00 0.00 4.73
5278 5713 4.619760 GCAAAAACTAACTAAACGGGATGC 59.380 41.667 0.00 0.00 0.00 3.91
5279 5714 6.009115 AGCAAAAACTAACTAAACGGGATG 57.991 37.500 0.00 0.00 0.00 3.51
5280 5715 6.128090 GCTAGCAAAAACTAACTAAACGGGAT 60.128 38.462 10.63 0.00 0.00 3.85
5281 5716 5.179929 GCTAGCAAAAACTAACTAAACGGGA 59.820 40.000 10.63 0.00 0.00 5.14
5282 5717 5.180680 AGCTAGCAAAAACTAACTAAACGGG 59.819 40.000 18.83 0.00 0.00 5.28
5283 5718 6.237313 AGCTAGCAAAAACTAACTAAACGG 57.763 37.500 18.83 0.00 0.00 4.44
5284 5719 7.349711 TCAAGCTAGCAAAAACTAACTAAACG 58.650 34.615 18.83 0.00 0.00 3.60
5285 5720 9.511144 TTTCAAGCTAGCAAAAACTAACTAAAC 57.489 29.630 18.83 0.00 0.00 2.01
5289 5724 9.249457 GAATTTTCAAGCTAGCAAAAACTAACT 57.751 29.630 18.83 2.96 0.00 2.24
5290 5725 9.030301 TGAATTTTCAAGCTAGCAAAAACTAAC 57.970 29.630 18.83 11.75 33.55 2.34
5291 5726 9.762933 ATGAATTTTCAAGCTAGCAAAAACTAA 57.237 25.926 18.83 4.44 41.13 2.24
5292 5727 9.762933 AATGAATTTTCAAGCTAGCAAAAACTA 57.237 25.926 18.83 10.14 41.13 2.24
5293 5728 8.667076 AATGAATTTTCAAGCTAGCAAAAACT 57.333 26.923 18.83 10.20 41.13 2.66
5294 5729 9.720667 AAAATGAATTTTCAAGCTAGCAAAAAC 57.279 25.926 18.83 12.90 41.13 2.43
5343 5778 9.685276 AGTCCACTTATGATATGTCAATTCAAA 57.315 29.630 0.00 0.00 38.01 2.69
5344 5779 9.685276 AAGTCCACTTATGATATGTCAATTCAA 57.315 29.630 0.00 0.00 38.01 2.69
5345 5780 9.685276 AAAGTCCACTTATGATATGTCAATTCA 57.315 29.630 0.00 0.00 34.80 2.57
5350 5785 9.093970 CGTTTAAAGTCCACTTATGATATGTCA 57.906 33.333 0.00 0.00 35.32 3.58
5351 5786 8.548721 CCGTTTAAAGTCCACTTATGATATGTC 58.451 37.037 0.00 0.00 34.61 3.06
5352 5787 7.497909 CCCGTTTAAAGTCCACTTATGATATGT 59.502 37.037 0.00 0.00 34.61 2.29
5353 5788 7.713507 TCCCGTTTAAAGTCCACTTATGATATG 59.286 37.037 0.00 0.00 34.61 1.78
5354 5789 7.798071 TCCCGTTTAAAGTCCACTTATGATAT 58.202 34.615 0.00 0.00 34.61 1.63
5355 5790 7.185318 TCCCGTTTAAAGTCCACTTATGATA 57.815 36.000 0.00 0.00 34.61 2.15
5356 5791 6.057321 TCCCGTTTAAAGTCCACTTATGAT 57.943 37.500 0.00 0.00 34.61 2.45
5357 5792 5.486735 TCCCGTTTAAAGTCCACTTATGA 57.513 39.130 0.00 0.00 34.61 2.15
5358 5793 6.753107 AATCCCGTTTAAAGTCCACTTATG 57.247 37.500 0.00 0.00 34.61 1.90
5359 5794 8.733458 GTTTAATCCCGTTTAAAGTCCACTTAT 58.267 33.333 0.00 0.00 34.61 1.73
5360 5795 7.718753 TGTTTAATCCCGTTTAAAGTCCACTTA 59.281 33.333 0.00 0.00 34.61 2.24
5361 5796 6.546772 TGTTTAATCCCGTTTAAAGTCCACTT 59.453 34.615 0.00 0.00 37.91 3.16
5362 5797 6.063404 TGTTTAATCCCGTTTAAAGTCCACT 58.937 36.000 0.00 0.00 33.07 4.00
5363 5798 6.316440 TGTTTAATCCCGTTTAAAGTCCAC 57.684 37.500 0.00 0.00 33.07 4.02
5364 5799 5.474189 CCTGTTTAATCCCGTTTAAAGTCCA 59.526 40.000 0.00 0.00 33.07 4.02
5365 5800 5.706833 TCCTGTTTAATCCCGTTTAAAGTCC 59.293 40.000 0.00 0.00 33.07 3.85
5366 5801 6.348786 GGTCCTGTTTAATCCCGTTTAAAGTC 60.349 42.308 0.00 0.00 33.07 3.01
5367 5802 5.474532 GGTCCTGTTTAATCCCGTTTAAAGT 59.525 40.000 0.00 0.00 33.07 2.66
5368 5803 5.106038 GGGTCCTGTTTAATCCCGTTTAAAG 60.106 44.000 0.00 0.00 33.07 1.85
5369 5804 4.766373 GGGTCCTGTTTAATCCCGTTTAAA 59.234 41.667 0.00 0.00 0.00 1.52
5370 5805 4.334552 GGGTCCTGTTTAATCCCGTTTAA 58.665 43.478 0.00 0.00 0.00 1.52
5371 5806 3.954200 GGGTCCTGTTTAATCCCGTTTA 58.046 45.455 0.00 0.00 0.00 2.01
5372 5807 2.799017 GGGTCCTGTTTAATCCCGTTT 58.201 47.619 0.00 0.00 0.00 3.60
5373 5808 2.502142 GGGTCCTGTTTAATCCCGTT 57.498 50.000 0.00 0.00 0.00 4.44
5376 5811 0.622136 ACCGGGTCCTGTTTAATCCC 59.378 55.000 6.32 0.00 35.22 3.85
5377 5812 2.089201 CAACCGGGTCCTGTTTAATCC 58.911 52.381 6.32 0.00 0.00 3.01
5378 5813 2.745821 GTCAACCGGGTCCTGTTTAATC 59.254 50.000 6.32 0.00 0.00 1.75
5379 5814 2.106857 TGTCAACCGGGTCCTGTTTAAT 59.893 45.455 6.32 0.00 0.00 1.40
5380 5815 1.489649 TGTCAACCGGGTCCTGTTTAA 59.510 47.619 6.32 0.00 0.00 1.52
5381 5816 1.129917 TGTCAACCGGGTCCTGTTTA 58.870 50.000 6.32 0.00 0.00 2.01
5382 5817 0.476771 ATGTCAACCGGGTCCTGTTT 59.523 50.000 6.32 0.00 0.00 2.83
5383 5818 0.036306 GATGTCAACCGGGTCCTGTT 59.964 55.000 6.32 0.00 0.00 3.16
5384 5819 1.677552 GATGTCAACCGGGTCCTGT 59.322 57.895 6.32 0.00 0.00 4.00
5385 5820 1.078426 GGATGTCAACCGGGTCCTG 60.078 63.158 6.32 0.00 0.00 3.86
5386 5821 2.298661 GGGATGTCAACCGGGTCCT 61.299 63.158 6.32 0.00 0.00 3.85
5387 5822 0.979187 TAGGGATGTCAACCGGGTCC 60.979 60.000 6.32 0.00 0.00 4.46
5388 5823 0.906775 TTAGGGATGTCAACCGGGTC 59.093 55.000 6.32 0.00 0.00 4.46
5389 5824 1.364269 TTTAGGGATGTCAACCGGGT 58.636 50.000 6.32 0.00 0.00 5.28
5390 5825 2.729028 ATTTAGGGATGTCAACCGGG 57.271 50.000 6.32 0.00 0.00 5.73
5391 5826 4.036380 GCTTAATTTAGGGATGTCAACCGG 59.964 45.833 0.00 0.00 0.00 5.28
5392 5827 4.881850 AGCTTAATTTAGGGATGTCAACCG 59.118 41.667 0.00 0.00 0.00 4.44
5393 5828 7.719633 TGATAGCTTAATTTAGGGATGTCAACC 59.280 37.037 0.00 0.00 0.00 3.77
5394 5829 8.677148 TGATAGCTTAATTTAGGGATGTCAAC 57.323 34.615 0.00 0.00 0.00 3.18
5395 5830 9.866655 AATGATAGCTTAATTTAGGGATGTCAA 57.133 29.630 0.00 0.00 0.00 3.18
5396 5831 9.288576 CAATGATAGCTTAATTTAGGGATGTCA 57.711 33.333 0.00 0.00 0.00 3.58
5397 5832 8.734386 CCAATGATAGCTTAATTTAGGGATGTC 58.266 37.037 0.00 0.00 0.00 3.06
5398 5833 8.227507 ACCAATGATAGCTTAATTTAGGGATGT 58.772 33.333 0.00 0.00 0.00 3.06
5399 5834 8.641498 ACCAATGATAGCTTAATTTAGGGATG 57.359 34.615 0.00 0.00 0.00 3.51
5406 5841 9.533253 GTGCAATAACCAATGATAGCTTAATTT 57.467 29.630 0.00 0.00 0.00 1.82
5407 5842 8.694540 TGTGCAATAACCAATGATAGCTTAATT 58.305 29.630 0.00 0.00 0.00 1.40
5408 5843 8.236585 TGTGCAATAACCAATGATAGCTTAAT 57.763 30.769 0.00 0.00 0.00 1.40
5409 5844 7.637631 TGTGCAATAACCAATGATAGCTTAA 57.362 32.000 0.00 0.00 0.00 1.85
5410 5845 7.121907 TGTTGTGCAATAACCAATGATAGCTTA 59.878 33.333 11.33 0.00 37.10 3.09
5411 5846 6.071447 TGTTGTGCAATAACCAATGATAGCTT 60.071 34.615 11.33 0.00 37.10 3.74
5412 5847 5.418524 TGTTGTGCAATAACCAATGATAGCT 59.581 36.000 11.33 0.00 37.10 3.32
5413 5848 5.649557 TGTTGTGCAATAACCAATGATAGC 58.350 37.500 11.33 0.00 37.10 2.97
5414 5849 7.482474 TCATGTTGTGCAATAACCAATGATAG 58.518 34.615 11.33 0.00 37.10 2.08
5415 5850 7.401955 TCATGTTGTGCAATAACCAATGATA 57.598 32.000 11.33 0.00 37.10 2.15
5416 5851 6.283544 TCATGTTGTGCAATAACCAATGAT 57.716 33.333 11.33 0.00 37.10 2.45
5417 5852 5.718724 TCATGTTGTGCAATAACCAATGA 57.281 34.783 11.33 11.22 37.10 2.57
5418 5853 6.202379 TGTTTCATGTTGTGCAATAACCAATG 59.798 34.615 11.33 9.57 37.10 2.82
5433 5868 6.068010 TGGAGACCTAATGTTGTTTCATGTT 58.932 36.000 0.00 0.00 0.00 2.71
5745 6184 4.445052 CAGATTCGTTTTGCAAAATGAGCA 59.555 37.500 33.70 25.50 42.80 4.26
5773 6212 5.590663 CAGCCTTATGACTGTCTAGTGTCTA 59.409 44.000 9.51 0.00 37.25 2.59
5774 6213 4.400884 CAGCCTTATGACTGTCTAGTGTCT 59.599 45.833 9.51 0.00 37.25 3.41
5775 6214 4.677584 CAGCCTTATGACTGTCTAGTGTC 58.322 47.826 9.51 0.00 37.25 3.67
5776 6215 3.118956 GCAGCCTTATGACTGTCTAGTGT 60.119 47.826 9.51 0.00 37.25 3.55
5777 6216 3.452474 GCAGCCTTATGACTGTCTAGTG 58.548 50.000 9.51 1.66 37.25 2.74
5778 6217 2.432510 GGCAGCCTTATGACTGTCTAGT 59.567 50.000 3.29 0.00 40.66 2.57
5779 6218 2.697751 AGGCAGCCTTATGACTGTCTAG 59.302 50.000 8.70 4.12 46.62 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.