Multiple sequence alignment - TraesCS1D01G160800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G160800 chr1D 100.000 6351 0 0 1 6351 227724341 227730691 0.000000e+00 11729.0
1 TraesCS1D01G160800 chr1D 95.809 5559 161 29 1 5531 208405399 208399885 0.000000e+00 8909.0
2 TraesCS1D01G160800 chr1D 92.377 446 19 7 5845 6286 208399880 208399446 6.990000e-174 621.0
3 TraesCS1D01G160800 chr1D 88.254 315 21 3 5533 5846 22101485 22101186 4.680000e-96 363.0
4 TraesCS1D01G160800 chr1D 89.035 228 22 3 1 227 385925370 385925595 4.850000e-71 279.0
5 TraesCS1D01G160800 chr1D 93.151 73 2 1 6279 6351 208398618 208398549 3.130000e-18 104.0
6 TraesCS1D01G160800 chr1B 95.975 5565 155 33 1 5531 327353232 327358761 0.000000e+00 8972.0
7 TraesCS1D01G160800 chr1B 87.470 423 27 16 5845 6256 327358766 327359173 1.250000e-126 464.0
8 TraesCS1D01G160800 chr1B 83.819 309 28 15 5542 5846 418814973 418815263 2.260000e-69 274.0
9 TraesCS1D01G160800 chr1A 95.508 4764 139 33 798 5531 295232939 295228221 0.000000e+00 7542.0
10 TraesCS1D01G160800 chr1A 87.500 360 37 8 406 761 295233301 295232946 5.930000e-110 409.0
11 TraesCS1D01G160800 chr1A 88.199 322 21 4 5526 5846 549510515 549510210 1.010000e-97 368.0
12 TraesCS1D01G160800 chr1A 91.221 262 22 1 5845 6105 295228216 295227955 7.830000e-94 355.0
13 TraesCS1D01G160800 chr1A 91.473 129 6 3 6120 6246 295227858 295227733 8.470000e-39 172.0
14 TraesCS1D01G160800 chr1A 86.957 115 6 7 6237 6351 295225127 295225022 3.110000e-23 121.0
15 TraesCS1D01G160800 chr1A 94.444 36 1 1 4417 4452 399498768 399498734 3.000000e-03 54.7
16 TraesCS1D01G160800 chr5D 91.083 314 11 3 5533 5846 411823638 411823342 5.930000e-110 409.0
17 TraesCS1D01G160800 chr7D 89.274 317 16 5 5533 5846 530744609 530744308 1.290000e-101 381.0
18 TraesCS1D01G160800 chr7D 89.956 229 21 2 1 228 49952012 49952239 1.730000e-75 294.0
19 TraesCS1D01G160800 chr7D 88.462 234 25 2 1 233 166197580 166197812 1.350000e-71 281.0
20 TraesCS1D01G160800 chr7B 88.217 314 19 3 5533 5846 498063809 498064104 6.050000e-95 359.0
21 TraesCS1D01G160800 chr7B 83.951 324 30 15 5526 5846 628754459 628754155 2.240000e-74 291.0
22 TraesCS1D01G160800 chr5B 86.076 316 27 10 5533 5846 529382815 529383115 2.210000e-84 324.0
23 TraesCS1D01G160800 chr5B 95.210 167 8 0 5682 5848 356254452 356254618 1.360000e-66 265.0
24 TraesCS1D01G160800 chr5B 92.715 151 9 2 5530 5679 491851256 491851107 3.860000e-52 217.0
25 TraesCS1D01G160800 chr2A 84.062 320 35 4 5527 5846 18173368 18173065 1.730000e-75 294.0
26 TraesCS1D01G160800 chr2A 97.143 35 1 0 4418 4452 651599233 651599199 6.880000e-05 60.2
27 TraesCS1D01G160800 chr3A 88.987 227 25 0 1 227 133673991 133674217 1.350000e-71 281.0
28 TraesCS1D01G160800 chr2B 88.987 227 25 0 1 227 163154906 163155132 1.350000e-71 281.0
29 TraesCS1D01G160800 chr2D 89.035 228 22 3 1 227 112834612 112834837 4.850000e-71 279.0
30 TraesCS1D01G160800 chr2D 89.697 165 14 2 5532 5696 101686371 101686210 2.320000e-49 207.0
31 TraesCS1D01G160800 chr2D 97.143 35 1 0 4418 4452 506776637 506776603 6.880000e-05 60.2
32 TraesCS1D01G160800 chr5A 88.646 229 25 1 1 228 290611638 290611866 1.740000e-70 278.0
33 TraesCS1D01G160800 chr5A 94.595 148 7 1 5533 5679 138079983 138080130 1.780000e-55 228.0
34 TraesCS1D01G160800 chr4D 85.098 255 19 7 5533 5785 51917301 51917064 6.360000e-60 243.0
35 TraesCS1D01G160800 chr6B 82.394 284 34 9 5528 5811 212164541 212164808 3.830000e-57 233.0
36 TraesCS1D01G160800 chr6D 93.919 148 8 1 5533 5679 39090503 39090356 8.290000e-54 222.0
37 TraesCS1D01G160800 chrUn 92.715 151 10 1 5530 5679 8839671 8839821 3.860000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G160800 chr1D 227724341 227730691 6350 False 11729.000000 11729 100.0000 1 6351 1 chr1D.!!$F1 6350
1 TraesCS1D01G160800 chr1D 208398549 208405399 6850 True 3211.333333 8909 93.7790 1 6351 3 chr1D.!!$R2 6350
2 TraesCS1D01G160800 chr1B 327353232 327359173 5941 False 4718.000000 8972 91.7225 1 6256 2 chr1B.!!$F2 6255
3 TraesCS1D01G160800 chr1A 295225022 295233301 8279 True 1719.800000 7542 90.5318 406 6351 5 chr1A.!!$R3 5945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.040425 ACGCAGTTTCAAACCGCATC 60.040 50.000 9.15 0.00 37.78 3.91 F
1276 1310 0.103026 CTGTCCGCATCATCTTCCGA 59.897 55.000 0.00 0.00 0.00 4.55 F
1284 1318 2.349249 GCATCATCTTCCGATTTCTGCG 60.349 50.000 0.00 0.00 0.00 5.18 F
1987 2031 2.987149 GACTCTGGTTACACATGTCACG 59.013 50.000 0.00 0.00 0.00 4.35 F
3370 3419 4.489306 AACAGCTGGAGGTACTATTTCC 57.511 45.455 19.93 0.00 41.55 3.13 F
5005 5073 0.109597 GTCGGTTTCCTTGCATGCAG 60.110 55.000 21.50 14.51 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1318 0.250513 AGATTCCACTGAAGGACGGC 59.749 55.000 0.00 0.0 37.42 5.68 R
3110 3159 1.966451 GCACTTTGAGGGTCCACGG 60.966 63.158 0.00 0.0 0.00 4.94 R
3370 3419 9.132521 CAAGAAAATACTTGGCAAAGACTAATG 57.867 33.333 8.15 0.0 42.17 1.90 R
3723 3781 2.353307 CGGTACAAGACATGCTACACCA 60.353 50.000 0.00 0.0 0.00 4.17 R
5263 5335 1.337823 TGGTACTTGCTCCGCTTCTTC 60.338 52.381 0.00 0.0 0.00 2.87 R
5815 5887 1.134580 CATCATCTCCAACTGGCTCGT 60.135 52.381 0.00 0.0 34.44 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.629051 GGATTGACAACCCCTCTTACG 58.371 52.381 0.00 0.00 0.00 3.18
57 58 1.290955 CAACCCCTCTTACGCGTCA 59.709 57.895 18.63 3.02 0.00 4.35
61 62 0.460311 CCCCTCTTACGCGTCAGATT 59.540 55.000 22.32 0.00 0.00 2.40
72 73 5.478233 ACGCGTCAGATTGCAATTATTTA 57.522 34.783 14.33 0.00 0.00 1.40
75 76 7.635423 ACGCGTCAGATTGCAATTATTTATTA 58.365 30.769 14.33 0.00 0.00 0.98
106 107 6.899771 GTGCATGTATCGTTTACATAGTGTTG 59.100 38.462 11.57 4.25 36.49 3.33
107 108 6.814146 TGCATGTATCGTTTACATAGTGTTGA 59.186 34.615 11.57 0.00 36.49 3.18
110 111 9.636965 CATGTATCGTTTACATAGTGTTGATTG 57.363 33.333 11.57 0.00 36.49 2.67
114 115 7.124347 TCGTTTACATAGTGTTGATTGGTTC 57.876 36.000 0.00 0.00 0.00 3.62
116 117 7.117236 TCGTTTACATAGTGTTGATTGGTTCTC 59.883 37.037 0.00 0.00 0.00 2.87
119 120 5.248640 ACATAGTGTTGATTGGTTCTCCTG 58.751 41.667 0.00 0.00 34.23 3.86
158 159 7.561356 CCTTGGTTTCATAACTGAGGGAAATAT 59.439 37.037 0.00 0.00 35.01 1.28
159 160 8.893563 TTGGTTTCATAACTGAGGGAAATATT 57.106 30.769 0.00 0.00 34.59 1.28
168 169 5.608449 ACTGAGGGAAATATTTACCGTAGC 58.392 41.667 24.51 16.41 46.20 3.58
173 174 6.519382 AGGGAAATATTTACCGTAGCTGTAC 58.481 40.000 21.48 0.00 46.20 2.90
175 176 7.506938 AGGGAAATATTTACCGTAGCTGTACTA 59.493 37.037 21.48 0.00 46.20 1.82
176 177 8.143835 GGGAAATATTTACCGTAGCTGTACTAA 58.856 37.037 13.81 0.00 30.03 2.24
187 188 7.147880 ACCGTAGCTGTACTAAATCATCTCTTT 60.148 37.037 0.00 0.00 30.90 2.52
197 198 7.115414 ACTAAATCATCTCTTTCTCTTTGGGG 58.885 38.462 0.00 0.00 0.00 4.96
218 219 6.093907 GGGAAATACCGACGCAGTTTCAAA 62.094 45.833 14.56 0.00 37.04 2.69
225 226 0.040425 ACGCAGTTTCAAACCGCATC 60.040 50.000 9.15 0.00 37.78 3.91
278 279 2.479837 CTCACACGGAAGCACAAACTA 58.520 47.619 0.00 0.00 0.00 2.24
289 290 5.915196 GGAAGCACAAACTATGAAGAACAAC 59.085 40.000 0.00 0.00 0.00 3.32
308 309 6.639632 ACAACTGTGCTTTTCACTTATCAT 57.360 33.333 0.00 0.00 45.81 2.45
423 427 5.887214 ACCTAAAAAGAACCCAGCAAAAT 57.113 34.783 0.00 0.00 0.00 1.82
517 522 3.353836 GACAACGCCGCACCACAT 61.354 61.111 0.00 0.00 0.00 3.21
1089 1123 1.059264 CCGTTTTTCTGATCGACTCGC 59.941 52.381 0.00 0.00 0.00 5.03
1264 1298 2.126031 GGTTCGTCTCCTGTCCGC 60.126 66.667 0.00 0.00 0.00 5.54
1265 1299 2.649034 GTTCGTCTCCTGTCCGCA 59.351 61.111 0.00 0.00 0.00 5.69
1274 1308 0.465705 TCCTGTCCGCATCATCTTCC 59.534 55.000 0.00 0.00 0.00 3.46
1276 1310 0.103026 CTGTCCGCATCATCTTCCGA 59.897 55.000 0.00 0.00 0.00 4.55
1284 1318 2.349249 GCATCATCTTCCGATTTCTGCG 60.349 50.000 0.00 0.00 0.00 5.18
1414 1453 4.393062 ACCGAATTCTGCAAGTCATTGTAG 59.607 41.667 3.52 0.30 46.92 2.74
1448 1489 8.946085 ACATACAGTTTGTCATTCGTATCAATT 58.054 29.630 0.00 0.00 0.00 2.32
1459 1500 6.756542 TCATTCGTATCAATTGTAGTCTGGTG 59.243 38.462 5.13 0.00 0.00 4.17
1547 1588 3.184541 GCATGTTGCAAGATGGATTGTC 58.815 45.455 30.91 14.26 44.26 3.18
1622 1663 4.769688 TGTATGGAGTGCCTTATGTTCAG 58.230 43.478 0.00 0.00 34.31 3.02
1987 2031 2.987149 GACTCTGGTTACACATGTCACG 59.013 50.000 0.00 0.00 0.00 4.35
3110 3159 8.519526 TGGGAATTGTGTCAAAGAATTGTATAC 58.480 33.333 0.00 0.00 37.79 1.47
3370 3419 4.489306 AACAGCTGGAGGTACTATTTCC 57.511 45.455 19.93 0.00 41.55 3.13
3723 3781 7.580882 GCCTATCCGTTAACCCAGATAATACAT 60.581 40.741 0.00 0.00 0.00 2.29
3753 3811 1.372499 TCTTGTACCGAGTGCACGC 60.372 57.895 12.01 11.45 0.00 5.34
4448 4507 5.063204 CCCTCTGTTCACAAATGTAAGACA 58.937 41.667 0.00 0.00 0.00 3.41
4709 4776 5.884232 TGACTTCCAATCTTCCATCATCTTG 59.116 40.000 0.00 0.00 0.00 3.02
4758 4825 5.973651 ATGACTAAATGTACTCATGCACG 57.026 39.130 0.00 0.00 34.19 5.34
4785 4853 8.141835 TCATGTTCCGAGTAAATGTATTGATG 57.858 34.615 0.00 0.00 0.00 3.07
5000 5068 1.228124 CCTGGTCGGTTTCCTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
5004 5072 1.523154 GGTCGGTTTCCTTGCATGCA 61.523 55.000 18.46 18.46 0.00 3.96
5005 5073 0.109597 GTCGGTTTCCTTGCATGCAG 60.110 55.000 21.50 14.51 0.00 4.41
5123 5192 3.019564 GAGGATGTGGTTGAGGATTTGG 58.980 50.000 0.00 0.00 0.00 3.28
5134 5203 4.705110 TGAGGATTTGGTCTTGAGTTCA 57.295 40.909 0.00 0.00 0.00 3.18
5137 5206 5.013495 TGAGGATTTGGTCTTGAGTTCAGAT 59.987 40.000 0.00 0.00 0.00 2.90
5263 5335 3.750652 GGAAGAAACAGAAGGAGAAGCTG 59.249 47.826 0.00 0.00 35.81 4.24
5269 5341 4.270245 ACAGAAGGAGAAGCTGAAGAAG 57.730 45.455 0.00 0.00 33.94 2.85
5355 5427 7.880059 AGAAGAAAGCAAAGCATTAATCAAC 57.120 32.000 0.00 0.00 0.00 3.18
5474 5546 5.886960 ATTACACAGCTTCCTTTGTCATC 57.113 39.130 0.00 0.00 34.12 2.92
5525 5597 2.923121 TCTGCTCAGTTCAACTTTGCT 58.077 42.857 11.48 0.00 0.00 3.91
5531 5603 6.172630 TGCTCAGTTCAACTTTGCTGATATA 58.827 36.000 11.48 0.00 37.36 0.86
5532 5604 6.825213 TGCTCAGTTCAACTTTGCTGATATAT 59.175 34.615 11.48 0.00 37.36 0.86
5533 5605 7.337689 TGCTCAGTTCAACTTTGCTGATATATT 59.662 33.333 11.48 0.00 37.36 1.28
5559 5631 8.669946 TTTTTCGAAAAGGAGGCAAAATATTT 57.330 26.923 21.53 0.00 0.00 1.40
5560 5632 7.650834 TTTCGAAAAGGAGGCAAAATATTTG 57.349 32.000 8.44 0.00 0.00 2.32
5561 5633 5.167845 TCGAAAAGGAGGCAAAATATTTGC 58.832 37.500 17.18 17.18 44.22 3.68
5573 5645 7.928908 GCAAAATATTTGCCTCATCGATTAA 57.071 32.000 15.12 0.00 39.38 1.40
5574 5646 8.524870 GCAAAATATTTGCCTCATCGATTAAT 57.475 30.769 15.12 0.00 39.38 1.40
5575 5647 8.981647 GCAAAATATTTGCCTCATCGATTAATT 58.018 29.630 15.12 0.00 39.38 1.40
5582 5654 8.731275 TTTGCCTCATCGATTAATTAAGAAGA 57.269 30.769 3.94 3.72 0.00 2.87
5583 5655 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
5584 5656 8.370493 TGCCTCATCGATTAATTAAGAAGAAG 57.630 34.615 3.94 1.26 0.00 2.85
5585 5657 8.204160 TGCCTCATCGATTAATTAAGAAGAAGA 58.796 33.333 3.94 5.03 0.00 2.87
5586 5658 8.707839 GCCTCATCGATTAATTAAGAAGAAGAG 58.292 37.037 16.89 16.89 0.00 2.85
5587 5659 9.973450 CCTCATCGATTAATTAAGAAGAAGAGA 57.027 33.333 21.25 12.30 0.00 3.10
5593 5665 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
5594 5666 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
5595 5667 8.877864 TTAATTAAGAAGAAGAGAATTGCCCA 57.122 30.769 0.00 0.00 0.00 5.36
5596 5668 7.401955 AATTAAGAAGAAGAGAATTGCCCAG 57.598 36.000 0.00 0.00 0.00 4.45
5597 5669 4.379302 AAGAAGAAGAGAATTGCCCAGT 57.621 40.909 0.00 0.00 0.00 4.00
5598 5670 4.379302 AGAAGAAGAGAATTGCCCAGTT 57.621 40.909 0.00 0.00 0.00 3.16
5599 5671 5.505181 AGAAGAAGAGAATTGCCCAGTTA 57.495 39.130 0.00 0.00 0.00 2.24
5600 5672 5.880901 AGAAGAAGAGAATTGCCCAGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
5601 5673 6.488715 AGAAGAAGAGAATTGCCCAGTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
5602 5674 6.950619 AGAAGAAGAGAATTGCCCAGTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
5603 5675 8.109634 AGAAGAAGAGAATTGCCCAGTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
5604 5676 8.650143 AAGAAGAGAATTGCCCAGTTAATTAA 57.350 30.769 0.00 0.00 0.00 1.40
5605 5677 8.056407 AGAAGAGAATTGCCCAGTTAATTAAC 57.944 34.615 18.77 18.77 36.46 2.01
5606 5678 6.436843 AGAGAATTGCCCAGTTAATTAACG 57.563 37.500 19.92 15.03 40.96 3.18
5607 5679 5.357032 AGAGAATTGCCCAGTTAATTAACGG 59.643 40.000 19.92 21.15 40.96 4.44
5608 5680 5.258051 AGAATTGCCCAGTTAATTAACGGA 58.742 37.500 26.78 13.37 40.96 4.69
5609 5681 5.712917 AGAATTGCCCAGTTAATTAACGGAA 59.287 36.000 26.78 18.98 40.96 4.30
5610 5682 5.986501 ATTGCCCAGTTAATTAACGGAAA 57.013 34.783 26.78 21.17 40.96 3.13
5611 5683 5.786264 TTGCCCAGTTAATTAACGGAAAA 57.214 34.783 26.78 20.29 40.96 2.29
5612 5684 5.123805 TGCCCAGTTAATTAACGGAAAAC 57.876 39.130 26.78 18.05 40.96 2.43
5613 5685 4.828387 TGCCCAGTTAATTAACGGAAAACT 59.172 37.500 26.78 10.10 40.96 2.66
5614 5686 5.158494 GCCCAGTTAATTAACGGAAAACTG 58.842 41.667 26.78 18.39 44.15 3.16
5617 5689 5.158494 CAGTTAATTAACGGAAAACTGGGC 58.842 41.667 19.91 0.00 41.99 5.36
5618 5690 4.828387 AGTTAATTAACGGAAAACTGGGCA 59.172 37.500 19.92 0.00 40.96 5.36
5619 5691 5.302313 AGTTAATTAACGGAAAACTGGGCAA 59.698 36.000 19.92 0.00 40.96 4.52
5620 5692 4.674281 AATTAACGGAAAACTGGGCAAA 57.326 36.364 0.00 0.00 0.00 3.68
5621 5693 4.674281 ATTAACGGAAAACTGGGCAAAA 57.326 36.364 0.00 0.00 0.00 2.44
5622 5694 4.467198 TTAACGGAAAACTGGGCAAAAA 57.533 36.364 0.00 0.00 0.00 1.94
5623 5695 2.303163 ACGGAAAACTGGGCAAAAAC 57.697 45.000 0.00 0.00 0.00 2.43
5624 5696 1.134640 ACGGAAAACTGGGCAAAAACC 60.135 47.619 0.00 0.00 0.00 3.27
5625 5697 1.577468 GGAAAACTGGGCAAAAACCG 58.423 50.000 0.00 0.00 0.00 4.44
5626 5698 1.137282 GGAAAACTGGGCAAAAACCGA 59.863 47.619 0.00 0.00 0.00 4.69
5627 5699 2.224185 GGAAAACTGGGCAAAAACCGAT 60.224 45.455 0.00 0.00 0.00 4.18
5628 5700 3.006003 GGAAAACTGGGCAAAAACCGATA 59.994 43.478 0.00 0.00 0.00 2.92
5629 5701 3.653539 AAACTGGGCAAAAACCGATAC 57.346 42.857 0.00 0.00 0.00 2.24
5630 5702 2.279935 ACTGGGCAAAAACCGATACA 57.720 45.000 0.00 0.00 0.00 2.29
5631 5703 2.802719 ACTGGGCAAAAACCGATACAT 58.197 42.857 0.00 0.00 0.00 2.29
5632 5704 3.958018 ACTGGGCAAAAACCGATACATA 58.042 40.909 0.00 0.00 0.00 2.29
5633 5705 4.532834 ACTGGGCAAAAACCGATACATAT 58.467 39.130 0.00 0.00 0.00 1.78
5634 5706 5.686753 ACTGGGCAAAAACCGATACATATA 58.313 37.500 0.00 0.00 0.00 0.86
5635 5707 5.763204 ACTGGGCAAAAACCGATACATATAG 59.237 40.000 0.00 0.00 0.00 1.31
5636 5708 5.931294 TGGGCAAAAACCGATACATATAGA 58.069 37.500 0.00 0.00 0.00 1.98
5637 5709 5.761234 TGGGCAAAAACCGATACATATAGAC 59.239 40.000 0.00 0.00 0.00 2.59
5638 5710 5.180680 GGGCAAAAACCGATACATATAGACC 59.819 44.000 0.00 0.00 0.00 3.85
5639 5711 5.761234 GGCAAAAACCGATACATATAGACCA 59.239 40.000 0.00 0.00 0.00 4.02
5640 5712 6.293244 GGCAAAAACCGATACATATAGACCAC 60.293 42.308 0.00 0.00 0.00 4.16
5641 5713 6.563381 GCAAAAACCGATACATATAGACCACG 60.563 42.308 0.00 0.00 0.00 4.94
5642 5714 5.779529 AAACCGATACATATAGACCACGT 57.220 39.130 0.00 0.00 0.00 4.49
5643 5715 4.761235 ACCGATACATATAGACCACGTG 57.239 45.455 9.08 9.08 0.00 4.49
5644 5716 3.057736 ACCGATACATATAGACCACGTGC 60.058 47.826 10.91 0.00 0.00 5.34
5645 5717 3.161306 CGATACATATAGACCACGTGCG 58.839 50.000 10.91 6.24 0.00 5.34
5646 5718 3.499048 GATACATATAGACCACGTGCGG 58.501 50.000 10.91 0.00 0.00 5.69
5647 5719 1.395635 ACATATAGACCACGTGCGGA 58.604 50.000 10.91 0.00 0.00 5.54
5648 5720 1.066605 ACATATAGACCACGTGCGGAC 59.933 52.381 10.91 0.00 0.00 4.79
5649 5721 1.337071 CATATAGACCACGTGCGGACT 59.663 52.381 10.91 6.08 35.21 3.85
5650 5722 2.330440 TATAGACCACGTGCGGACTA 57.670 50.000 10.91 8.28 37.63 2.59
5651 5723 0.737219 ATAGACCACGTGCGGACTAC 59.263 55.000 10.91 0.00 36.38 2.73
5652 5724 0.321919 TAGACCACGTGCGGACTACT 60.322 55.000 10.91 3.65 33.04 2.57
5653 5725 1.177256 AGACCACGTGCGGACTACTT 61.177 55.000 10.91 0.00 28.76 2.24
5654 5726 1.006571 ACCACGTGCGGACTACTTG 60.007 57.895 10.91 0.00 0.00 3.16
5655 5727 2.380410 CCACGTGCGGACTACTTGC 61.380 63.158 10.91 0.00 0.00 4.01
5656 5728 1.372997 CACGTGCGGACTACTTGCT 60.373 57.895 0.82 0.00 0.00 3.91
5657 5729 0.109458 CACGTGCGGACTACTTGCTA 60.109 55.000 0.82 0.00 0.00 3.49
5658 5730 0.599558 ACGTGCGGACTACTTGCTAA 59.400 50.000 5.27 0.00 0.00 3.09
5659 5731 1.269166 CGTGCGGACTACTTGCTAAG 58.731 55.000 5.27 0.00 0.00 2.18
5660 5732 1.135489 CGTGCGGACTACTTGCTAAGA 60.135 52.381 5.27 0.00 0.00 2.10
5661 5733 2.531206 GTGCGGACTACTTGCTAAGAG 58.469 52.381 0.00 0.60 0.00 2.85
5662 5734 2.163815 GTGCGGACTACTTGCTAAGAGA 59.836 50.000 0.00 0.00 0.00 3.10
5663 5735 2.423892 TGCGGACTACTTGCTAAGAGAG 59.576 50.000 3.37 3.26 0.00 3.20
5664 5736 2.683867 GCGGACTACTTGCTAAGAGAGA 59.316 50.000 3.37 0.00 0.00 3.10
5665 5737 3.128938 GCGGACTACTTGCTAAGAGAGAA 59.871 47.826 3.37 0.00 0.00 2.87
5666 5738 4.380655 GCGGACTACTTGCTAAGAGAGAAA 60.381 45.833 3.37 0.00 0.00 2.52
5667 5739 5.096849 CGGACTACTTGCTAAGAGAGAAAC 58.903 45.833 3.37 0.00 0.00 2.78
5668 5740 5.106078 CGGACTACTTGCTAAGAGAGAAACT 60.106 44.000 3.37 0.00 0.00 2.66
5669 5741 6.327154 GGACTACTTGCTAAGAGAGAAACTC 58.673 44.000 3.37 0.00 45.22 3.01
5670 5742 6.275494 ACTACTTGCTAAGAGAGAAACTCC 57.725 41.667 3.37 0.00 45.96 3.85
5671 5743 5.775701 ACTACTTGCTAAGAGAGAAACTCCA 59.224 40.000 3.37 0.00 45.96 3.86
5672 5744 5.753721 ACTTGCTAAGAGAGAAACTCCAT 57.246 39.130 3.37 0.00 45.96 3.41
5673 5745 5.486526 ACTTGCTAAGAGAGAAACTCCATG 58.513 41.667 3.37 0.00 45.96 3.66
5674 5746 5.247110 ACTTGCTAAGAGAGAAACTCCATGA 59.753 40.000 0.00 0.00 45.96 3.07
5675 5747 5.078411 TGCTAAGAGAGAAACTCCATGAC 57.922 43.478 0.00 0.00 45.96 3.06
5676 5748 4.081420 TGCTAAGAGAGAAACTCCATGACC 60.081 45.833 0.00 0.00 45.96 4.02
5677 5749 3.990959 AAGAGAGAAACTCCATGACCC 57.009 47.619 0.00 0.00 45.96 4.46
5678 5750 2.907892 AGAGAGAAACTCCATGACCCA 58.092 47.619 0.00 0.00 45.96 4.51
5679 5751 3.251484 AGAGAGAAACTCCATGACCCAA 58.749 45.455 0.00 0.00 45.96 4.12
5680 5752 3.008485 AGAGAGAAACTCCATGACCCAAC 59.992 47.826 0.00 0.00 45.96 3.77
5681 5753 2.711009 AGAGAAACTCCATGACCCAACA 59.289 45.455 0.00 0.00 0.00 3.33
5682 5754 2.814336 GAGAAACTCCATGACCCAACAC 59.186 50.000 0.00 0.00 0.00 3.32
5683 5755 2.443255 AGAAACTCCATGACCCAACACT 59.557 45.455 0.00 0.00 0.00 3.55
5684 5756 2.568623 AACTCCATGACCCAACACTC 57.431 50.000 0.00 0.00 0.00 3.51
5685 5757 0.693049 ACTCCATGACCCAACACTCC 59.307 55.000 0.00 0.00 0.00 3.85
5686 5758 0.692476 CTCCATGACCCAACACTCCA 59.308 55.000 0.00 0.00 0.00 3.86
5687 5759 1.283029 CTCCATGACCCAACACTCCAT 59.717 52.381 0.00 0.00 0.00 3.41
5688 5760 1.004628 TCCATGACCCAACACTCCATG 59.995 52.381 0.00 0.00 35.61 3.66
5689 5761 1.004628 CCATGACCCAACACTCCATGA 59.995 52.381 0.00 0.00 37.41 3.07
5690 5762 2.086869 CATGACCCAACACTCCATGAC 58.913 52.381 0.00 0.00 37.41 3.06
5691 5763 0.400213 TGACCCAACACTCCATGACC 59.600 55.000 0.00 0.00 0.00 4.02
5692 5764 0.322546 GACCCAACACTCCATGACCC 60.323 60.000 0.00 0.00 0.00 4.46
5693 5765 1.065410 ACCCAACACTCCATGACCCA 61.065 55.000 0.00 0.00 0.00 4.51
5694 5766 0.112218 CCCAACACTCCATGACCCAA 59.888 55.000 0.00 0.00 0.00 4.12
5695 5767 1.247567 CCAACACTCCATGACCCAAC 58.752 55.000 0.00 0.00 0.00 3.77
5696 5768 0.874390 CAACACTCCATGACCCAACG 59.126 55.000 0.00 0.00 0.00 4.10
5697 5769 0.250727 AACACTCCATGACCCAACGG 60.251 55.000 0.00 0.00 0.00 4.44
5715 5787 3.909957 GTCAACCCGACAAACACAC 57.090 52.632 0.00 0.00 44.69 3.82
5716 5788 1.088306 GTCAACCCGACAAACACACA 58.912 50.000 0.00 0.00 44.69 3.72
5717 5789 1.673920 GTCAACCCGACAAACACACAT 59.326 47.619 0.00 0.00 44.69 3.21
5718 5790 2.873472 GTCAACCCGACAAACACACATA 59.127 45.455 0.00 0.00 44.69 2.29
5719 5791 3.312973 GTCAACCCGACAAACACACATAA 59.687 43.478 0.00 0.00 44.69 1.90
5720 5792 3.562141 TCAACCCGACAAACACACATAAG 59.438 43.478 0.00 0.00 0.00 1.73
5721 5793 3.202829 ACCCGACAAACACACATAAGT 57.797 42.857 0.00 0.00 0.00 2.24
5722 5794 3.135994 ACCCGACAAACACACATAAGTC 58.864 45.455 0.00 0.00 0.00 3.01
5723 5795 2.156891 CCCGACAAACACACATAAGTCG 59.843 50.000 0.00 0.00 45.82 4.18
5724 5796 2.411031 CCGACAAACACACATAAGTCGC 60.411 50.000 7.20 0.00 45.15 5.19
5725 5797 2.219903 CGACAAACACACATAAGTCGCA 59.780 45.455 0.00 0.00 41.59 5.10
5726 5798 3.302805 CGACAAACACACATAAGTCGCAA 60.303 43.478 0.00 0.00 41.59 4.85
5727 5799 3.947626 ACAAACACACATAAGTCGCAAC 58.052 40.909 0.00 0.00 0.00 4.17
5728 5800 3.375610 ACAAACACACATAAGTCGCAACA 59.624 39.130 0.00 0.00 0.00 3.33
5729 5801 4.142578 ACAAACACACATAAGTCGCAACAA 60.143 37.500 0.00 0.00 0.00 2.83
5730 5802 3.602390 ACACACATAAGTCGCAACAAC 57.398 42.857 0.00 0.00 0.00 3.32
5731 5803 2.289547 ACACACATAAGTCGCAACAACC 59.710 45.455 0.00 0.00 0.00 3.77
5732 5804 2.289274 CACACATAAGTCGCAACAACCA 59.711 45.455 0.00 0.00 0.00 3.67
5733 5805 2.289547 ACACATAAGTCGCAACAACCAC 59.710 45.455 0.00 0.00 0.00 4.16
5734 5806 2.289274 CACATAAGTCGCAACAACCACA 59.711 45.455 0.00 0.00 0.00 4.17
5735 5807 2.946329 ACATAAGTCGCAACAACCACAA 59.054 40.909 0.00 0.00 0.00 3.33
5736 5808 3.568007 ACATAAGTCGCAACAACCACAAT 59.432 39.130 0.00 0.00 0.00 2.71
5737 5809 2.774439 AAGTCGCAACAACCACAATC 57.226 45.000 0.00 0.00 0.00 2.67
5738 5810 0.951558 AGTCGCAACAACCACAATCC 59.048 50.000 0.00 0.00 0.00 3.01
5739 5811 0.039527 GTCGCAACAACCACAATCCC 60.040 55.000 0.00 0.00 0.00 3.85
5740 5812 0.179004 TCGCAACAACCACAATCCCT 60.179 50.000 0.00 0.00 0.00 4.20
5741 5813 0.240945 CGCAACAACCACAATCCCTC 59.759 55.000 0.00 0.00 0.00 4.30
5742 5814 1.327303 GCAACAACCACAATCCCTCA 58.673 50.000 0.00 0.00 0.00 3.86
5743 5815 1.000274 GCAACAACCACAATCCCTCAC 60.000 52.381 0.00 0.00 0.00 3.51
5744 5816 2.305928 CAACAACCACAATCCCTCACA 58.694 47.619 0.00 0.00 0.00 3.58
5745 5817 1.981256 ACAACCACAATCCCTCACAC 58.019 50.000 0.00 0.00 0.00 3.82
5746 5818 1.494721 ACAACCACAATCCCTCACACT 59.505 47.619 0.00 0.00 0.00 3.55
5747 5819 2.091885 ACAACCACAATCCCTCACACTT 60.092 45.455 0.00 0.00 0.00 3.16
5748 5820 2.554032 CAACCACAATCCCTCACACTTC 59.446 50.000 0.00 0.00 0.00 3.01
5749 5821 2.057922 ACCACAATCCCTCACACTTCT 58.942 47.619 0.00 0.00 0.00 2.85
5750 5822 3.248024 ACCACAATCCCTCACACTTCTA 58.752 45.455 0.00 0.00 0.00 2.10
5751 5823 3.846588 ACCACAATCCCTCACACTTCTAT 59.153 43.478 0.00 0.00 0.00 1.98
5752 5824 4.194640 CCACAATCCCTCACACTTCTATG 58.805 47.826 0.00 0.00 0.00 2.23
5753 5825 4.323792 CCACAATCCCTCACACTTCTATGT 60.324 45.833 0.00 0.00 0.00 2.29
5754 5826 5.248640 CACAATCCCTCACACTTCTATGTT 58.751 41.667 0.00 0.00 0.00 2.71
5755 5827 5.122869 CACAATCCCTCACACTTCTATGTTG 59.877 44.000 0.00 0.00 0.00 3.33
5756 5828 5.221925 ACAATCCCTCACACTTCTATGTTGT 60.222 40.000 0.00 0.00 0.00 3.32
5757 5829 6.013725 ACAATCCCTCACACTTCTATGTTGTA 60.014 38.462 0.00 0.00 0.00 2.41
5758 5830 6.620877 ATCCCTCACACTTCTATGTTGTAA 57.379 37.500 0.00 0.00 0.00 2.41
5759 5831 6.428083 TCCCTCACACTTCTATGTTGTAAA 57.572 37.500 0.00 0.00 0.00 2.01
5760 5832 6.464222 TCCCTCACACTTCTATGTTGTAAAG 58.536 40.000 0.00 0.00 0.00 1.85
5761 5833 6.269077 TCCCTCACACTTCTATGTTGTAAAGA 59.731 38.462 0.00 0.00 0.00 2.52
5762 5834 6.934645 CCCTCACACTTCTATGTTGTAAAGAA 59.065 38.462 0.00 0.00 0.00 2.52
5763 5835 7.444183 CCCTCACACTTCTATGTTGTAAAGAAA 59.556 37.037 0.00 0.00 0.00 2.52
5764 5836 8.283291 CCTCACACTTCTATGTTGTAAAGAAAC 58.717 37.037 0.00 0.00 0.00 2.78
5765 5837 8.149973 TCACACTTCTATGTTGTAAAGAAACC 57.850 34.615 0.00 0.00 0.00 3.27
5766 5838 7.227910 TCACACTTCTATGTTGTAAAGAAACCC 59.772 37.037 0.00 0.00 0.00 4.11
5767 5839 6.489022 ACACTTCTATGTTGTAAAGAAACCCC 59.511 38.462 0.00 0.00 0.00 4.95
5768 5840 6.008331 ACTTCTATGTTGTAAAGAAACCCCC 58.992 40.000 0.00 0.00 0.00 5.40
5769 5841 5.586155 TCTATGTTGTAAAGAAACCCCCA 57.414 39.130 0.00 0.00 0.00 4.96
5770 5842 5.954757 TCTATGTTGTAAAGAAACCCCCAA 58.045 37.500 0.00 0.00 0.00 4.12
5771 5843 4.948341 ATGTTGTAAAGAAACCCCCAAC 57.052 40.909 0.00 0.00 34.32 3.77
5772 5844 2.688958 TGTTGTAAAGAAACCCCCAACG 59.311 45.455 0.00 0.00 36.00 4.10
5773 5845 2.950975 GTTGTAAAGAAACCCCCAACGA 59.049 45.455 0.00 0.00 0.00 3.85
5774 5846 3.294038 TGTAAAGAAACCCCCAACGAA 57.706 42.857 0.00 0.00 0.00 3.85
5775 5847 3.629087 TGTAAAGAAACCCCCAACGAAA 58.371 40.909 0.00 0.00 0.00 3.46
5776 5848 3.380954 TGTAAAGAAACCCCCAACGAAAC 59.619 43.478 0.00 0.00 0.00 2.78
5777 5849 1.405872 AAGAAACCCCCAACGAAACC 58.594 50.000 0.00 0.00 0.00 3.27
5778 5850 0.259356 AGAAACCCCCAACGAAACCA 59.741 50.000 0.00 0.00 0.00 3.67
5779 5851 1.112950 GAAACCCCCAACGAAACCAA 58.887 50.000 0.00 0.00 0.00 3.67
5780 5852 1.067974 GAAACCCCCAACGAAACCAAG 59.932 52.381 0.00 0.00 0.00 3.61
5781 5853 0.757561 AACCCCCAACGAAACCAAGG 60.758 55.000 0.00 0.00 0.00 3.61
5782 5854 1.152631 CCCCCAACGAAACCAAGGT 60.153 57.895 0.00 0.00 0.00 3.50
5783 5855 0.757561 CCCCCAACGAAACCAAGGTT 60.758 55.000 0.00 0.00 40.45 3.50
5784 5856 0.387565 CCCCAACGAAACCAAGGTTG 59.612 55.000 5.06 0.00 40.44 3.77
5785 5857 1.394618 CCCAACGAAACCAAGGTTGA 58.605 50.000 5.06 0.00 42.70 3.18
5786 5858 1.751924 CCCAACGAAACCAAGGTTGAA 59.248 47.619 5.06 0.00 42.70 2.69
5787 5859 2.223711 CCCAACGAAACCAAGGTTGAAG 60.224 50.000 5.06 3.02 42.70 3.02
5788 5860 2.223711 CCAACGAAACCAAGGTTGAAGG 60.224 50.000 5.06 0.69 42.70 3.46
5789 5861 1.029681 ACGAAACCAAGGTTGAAGGC 58.970 50.000 5.06 0.00 38.47 4.35
5790 5862 1.028905 CGAAACCAAGGTTGAAGGCA 58.971 50.000 5.06 0.00 38.47 4.75
5791 5863 1.407258 CGAAACCAAGGTTGAAGGCAA 59.593 47.619 5.06 0.00 38.47 4.52
5802 5874 1.904287 TGAAGGCAACACATACCACC 58.096 50.000 0.00 0.00 41.41 4.61
5803 5875 1.143889 TGAAGGCAACACATACCACCA 59.856 47.619 0.00 0.00 41.41 4.17
5804 5876 2.235016 GAAGGCAACACATACCACCAA 58.765 47.619 0.00 0.00 41.41 3.67
5805 5877 2.373335 AGGCAACACATACCACCAAA 57.627 45.000 0.00 0.00 41.41 3.28
5806 5878 2.888212 AGGCAACACATACCACCAAAT 58.112 42.857 0.00 0.00 41.41 2.32
5807 5879 2.825532 AGGCAACACATACCACCAAATC 59.174 45.455 0.00 0.00 41.41 2.17
5808 5880 2.094234 GGCAACACATACCACCAAATCC 60.094 50.000 0.00 0.00 0.00 3.01
5809 5881 2.560542 GCAACACATACCACCAAATCCA 59.439 45.455 0.00 0.00 0.00 3.41
5810 5882 3.613910 GCAACACATACCACCAAATCCAC 60.614 47.826 0.00 0.00 0.00 4.02
5811 5883 3.517296 ACACATACCACCAAATCCACA 57.483 42.857 0.00 0.00 0.00 4.17
5812 5884 3.838565 ACACATACCACCAAATCCACAA 58.161 40.909 0.00 0.00 0.00 3.33
5813 5885 4.219115 ACACATACCACCAAATCCACAAA 58.781 39.130 0.00 0.00 0.00 2.83
5814 5886 4.837860 ACACATACCACCAAATCCACAAAT 59.162 37.500 0.00 0.00 0.00 2.32
5815 5887 6.013379 ACACATACCACCAAATCCACAAATA 58.987 36.000 0.00 0.00 0.00 1.40
5816 5888 6.071616 ACACATACCACCAAATCCACAAATAC 60.072 38.462 0.00 0.00 0.00 1.89
5817 5889 5.124776 ACATACCACCAAATCCACAAATACG 59.875 40.000 0.00 0.00 0.00 3.06
5818 5890 3.757270 ACCACCAAATCCACAAATACGA 58.243 40.909 0.00 0.00 0.00 3.43
5819 5891 3.756434 ACCACCAAATCCACAAATACGAG 59.244 43.478 0.00 0.00 0.00 4.18
5820 5892 3.427503 CCACCAAATCCACAAATACGAGC 60.428 47.826 0.00 0.00 0.00 5.03
5821 5893 2.752903 ACCAAATCCACAAATACGAGCC 59.247 45.455 0.00 0.00 0.00 4.70
5822 5894 2.752354 CCAAATCCACAAATACGAGCCA 59.248 45.455 0.00 0.00 0.00 4.75
5823 5895 3.181497 CCAAATCCACAAATACGAGCCAG 60.181 47.826 0.00 0.00 0.00 4.85
5824 5896 3.350219 AATCCACAAATACGAGCCAGT 57.650 42.857 0.00 0.00 0.00 4.00
5825 5897 2.851263 TCCACAAATACGAGCCAGTT 57.149 45.000 0.00 0.00 0.00 3.16
5826 5898 2.422597 TCCACAAATACGAGCCAGTTG 58.577 47.619 0.00 0.00 0.00 3.16
5827 5899 1.468520 CCACAAATACGAGCCAGTTGG 59.531 52.381 0.00 0.00 38.53 3.77
5828 5900 2.422597 CACAAATACGAGCCAGTTGGA 58.577 47.619 1.45 0.00 37.39 3.53
5829 5901 2.416547 CACAAATACGAGCCAGTTGGAG 59.583 50.000 1.45 0.00 37.39 3.86
5830 5902 2.301870 ACAAATACGAGCCAGTTGGAGA 59.698 45.455 1.45 0.00 37.39 3.71
5831 5903 3.055094 ACAAATACGAGCCAGTTGGAGAT 60.055 43.478 1.45 0.00 37.39 2.75
5832 5904 2.898729 ATACGAGCCAGTTGGAGATG 57.101 50.000 1.45 0.00 37.39 2.90
5833 5905 1.847328 TACGAGCCAGTTGGAGATGA 58.153 50.000 1.45 0.00 37.39 2.92
5834 5906 1.198713 ACGAGCCAGTTGGAGATGAT 58.801 50.000 1.45 0.00 37.39 2.45
5835 5907 1.134580 ACGAGCCAGTTGGAGATGATG 60.135 52.381 1.45 0.00 37.39 3.07
5836 5908 1.809271 CGAGCCAGTTGGAGATGATGG 60.809 57.143 1.45 0.00 37.39 3.51
5837 5909 1.211457 GAGCCAGTTGGAGATGATGGT 59.789 52.381 1.45 0.00 37.39 3.55
5838 5910 1.211457 AGCCAGTTGGAGATGATGGTC 59.789 52.381 1.45 0.00 37.39 4.02
5839 5911 1.945387 CCAGTTGGAGATGATGGTCG 58.055 55.000 0.00 0.00 37.39 4.79
5840 5912 1.482182 CCAGTTGGAGATGATGGTCGA 59.518 52.381 0.00 0.00 37.39 4.20
5841 5913 2.093500 CCAGTTGGAGATGATGGTCGAA 60.093 50.000 0.00 0.00 37.39 3.71
5842 5914 3.193263 CAGTTGGAGATGATGGTCGAAG 58.807 50.000 0.00 0.00 0.00 3.79
5843 5915 3.099905 AGTTGGAGATGATGGTCGAAGA 58.900 45.455 0.00 0.00 0.00 2.87
5861 5933 7.065803 GGTCGAAGAGATTTCATTTCCATACAA 59.934 37.037 0.00 0.00 36.95 2.41
5935 6015 3.620488 TCTTCACCTGAAACTTTGCTGT 58.380 40.909 0.00 0.00 33.07 4.40
5976 6057 9.910511 CTTTCAATATAAACATGAAGCAAATGC 57.089 29.630 0.00 0.00 42.49 3.56
6000 6081 2.738846 CAGTTTCTGACCATTCCTGTCG 59.261 50.000 0.00 0.00 35.46 4.35
6024 6105 6.379386 GTTTTCAGTAGGGAATGTAAGCAAC 58.621 40.000 0.00 0.00 0.00 4.17
6035 6116 0.794473 GTAAGCAACCGTGTACAGGC 59.206 55.000 10.09 3.03 0.00 4.85
6054 6135 1.740025 GCTATGAAGCTTCGTTTGCCT 59.260 47.619 25.50 4.96 45.85 4.75
6085 6166 6.534793 ACATGCTTAGGAAGTTGTTGTTTTTG 59.465 34.615 0.00 0.00 0.00 2.44
6212 6378 2.048597 TGTACAGCACCGCGGAAG 60.049 61.111 35.90 24.47 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.557576 TGTCAATCCCTCCATGATAGAAG 57.442 43.478 0.00 0.00 0.00 2.85
21 22 4.392940 GGTTGTCAATCCCTCCATGATAG 58.607 47.826 0.00 0.00 0.00 2.08
24 25 1.284785 GGGTTGTCAATCCCTCCATGA 59.715 52.381 3.15 0.00 40.48 3.07
26 27 0.631212 GGGGTTGTCAATCCCTCCAT 59.369 55.000 24.72 0.00 43.00 3.41
72 73 8.454894 TGTAAACGATACATGCACACAAATAAT 58.545 29.630 0.00 0.00 0.00 1.28
75 76 6.247727 TGTAAACGATACATGCACACAAAT 57.752 33.333 0.00 0.00 0.00 2.32
86 87 7.820386 ACCAATCAACACTATGTAAACGATACA 59.180 33.333 7.96 7.96 0.00 2.29
90 91 6.932400 AGAACCAATCAACACTATGTAAACGA 59.068 34.615 0.00 0.00 0.00 3.85
114 115 8.995826 AACCAAGGTTATCAATCCAGCAGGAG 62.996 46.154 3.51 0.00 41.27 3.69
116 117 2.954318 CCAAGGTTATCAATCCAGCAGG 59.046 50.000 0.00 0.00 0.00 4.85
119 120 4.462483 TGAAACCAAGGTTATCAATCCAGC 59.538 41.667 4.68 0.00 37.35 4.85
158 159 8.004087 AGATGATTTAGTACAGCTACGGTAAA 57.996 34.615 0.00 0.00 30.92 2.01
159 160 7.501559 AGAGATGATTTAGTACAGCTACGGTAA 59.498 37.037 0.00 0.00 32.88 2.85
173 174 7.341805 TCCCCAAAGAGAAAGAGATGATTTAG 58.658 38.462 0.00 0.00 0.00 1.85
175 176 6.144845 TCCCCAAAGAGAAAGAGATGATTT 57.855 37.500 0.00 0.00 0.00 2.17
176 177 5.786121 TCCCCAAAGAGAAAGAGATGATT 57.214 39.130 0.00 0.00 0.00 2.57
187 188 2.093869 CGTCGGTATTTCCCCAAAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
197 198 3.799137 TTGAAACTGCGTCGGTATTTC 57.201 42.857 0.00 0.00 0.00 2.17
225 226 3.499737 GTGTGAATCCGGCGGCTG 61.500 66.667 23.83 0.65 0.00 4.85
257 258 0.307760 GTTTGTGCTTCCGTGTGAGG 59.692 55.000 0.00 0.00 0.00 3.86
278 279 5.343249 GTGAAAAGCACAGTTGTTCTTCAT 58.657 37.500 0.00 0.00 46.91 2.57
327 329 1.774254 TGTGCTTCCTCCTGAAAAGGA 59.226 47.619 0.00 0.00 41.21 3.36
395 397 5.163457 TGCTGGGTTCTTTTTAGGTTTCTTG 60.163 40.000 0.00 0.00 0.00 3.02
396 398 4.959839 TGCTGGGTTCTTTTTAGGTTTCTT 59.040 37.500 0.00 0.00 0.00 2.52
398 400 4.929819 TGCTGGGTTCTTTTTAGGTTTC 57.070 40.909 0.00 0.00 0.00 2.78
406 410 7.459795 TTTTTCAATTTTGCTGGGTTCTTTT 57.540 28.000 0.00 0.00 0.00 2.27
507 512 1.647545 GGTCATGTCATGTGGTGCGG 61.648 60.000 12.54 0.00 0.00 5.69
517 522 0.530744 GGCTACACGAGGTCATGTCA 59.469 55.000 0.00 0.00 0.00 3.58
1089 1123 1.592223 GTCACACGAAGAGAGGGGG 59.408 63.158 0.00 0.00 0.00 5.40
1274 1308 2.025359 GAAGGACGGCGCAGAAATCG 62.025 60.000 16.26 7.31 0.00 3.34
1276 1310 1.003839 TGAAGGACGGCGCAGAAAT 60.004 52.632 16.26 0.00 0.00 2.17
1284 1318 0.250513 AGATTCCACTGAAGGACGGC 59.749 55.000 0.00 0.00 37.42 5.68
1363 1398 5.538053 TCCAAAATTTGTCAGGCATGAGTAA 59.462 36.000 0.00 0.00 35.66 2.24
1414 1453 3.563808 TGACAAACTGTATGTGCAACTCC 59.436 43.478 0.00 0.00 38.04 3.85
1487 1528 3.272574 AGAATGGTCAGTGCGATTCAT 57.727 42.857 17.62 6.69 36.48 2.57
1547 1588 9.827411 TCTCACGATTATTATCTCTGTAAATCG 57.173 33.333 12.23 12.23 46.66 3.34
3110 3159 1.966451 GCACTTTGAGGGTCCACGG 60.966 63.158 0.00 0.00 0.00 4.94
3370 3419 9.132521 CAAGAAAATACTTGGCAAAGACTAATG 57.867 33.333 8.15 0.00 42.17 1.90
3723 3781 2.353307 CGGTACAAGACATGCTACACCA 60.353 50.000 0.00 0.00 0.00 4.17
3753 3811 4.913335 TCTAATGCGTACAGGGAAGTAG 57.087 45.455 0.00 0.00 0.00 2.57
4448 4507 6.306987 ACTCCCTCTGTTCACAAATGTAAAT 58.693 36.000 0.00 0.00 0.00 1.40
4709 4776 2.185004 ACTGAAGTATGGTGTGTGGC 57.815 50.000 0.00 0.00 0.00 5.01
4758 4825 6.257849 TCAATACATTTACTCGGAACATGAGC 59.742 38.462 0.00 0.00 36.94 4.26
4785 4853 9.822185 AAAGGAATGAATTAGTAAATGGCATTC 57.178 29.630 14.04 1.70 41.40 2.67
5004 5072 3.525199 AGGAGGTAAACATCATGCCTTCT 59.475 43.478 0.00 0.00 34.01 2.85
5005 5073 3.879892 GAGGAGGTAAACATCATGCCTTC 59.120 47.826 0.00 0.00 32.59 3.46
5123 5192 3.932089 GCTTCCTCATCTGAACTCAAGAC 59.068 47.826 0.00 0.00 0.00 3.01
5134 5203 2.364970 CTCATCTTCCGCTTCCTCATCT 59.635 50.000 0.00 0.00 0.00 2.90
5137 5206 1.852633 TCTCATCTTCCGCTTCCTCA 58.147 50.000 0.00 0.00 0.00 3.86
5170 5239 1.439644 GGAGCCATCCTCGTCTGAC 59.560 63.158 0.00 0.00 42.94 3.51
5263 5335 1.337823 TGGTACTTGCTCCGCTTCTTC 60.338 52.381 0.00 0.00 0.00 2.87
5269 5341 2.388232 CGGTTGGTACTTGCTCCGC 61.388 63.158 0.00 0.00 0.00 5.54
5401 5473 1.808945 GCAGGTGTTTCTCATGACTGG 59.191 52.381 8.73 0.00 0.00 4.00
5474 5546 8.498054 AATAACCTCGATATAAATGCATGGAG 57.502 34.615 0.00 0.00 0.00 3.86
5535 5607 7.307692 GCAAATATTTTGCCTCCTTTTCGAAAA 60.308 33.333 21.35 21.35 39.38 2.29
5536 5608 6.147000 GCAAATATTTTGCCTCCTTTTCGAAA 59.853 34.615 6.47 6.47 39.38 3.46
5537 5609 5.637387 GCAAATATTTTGCCTCCTTTTCGAA 59.363 36.000 12.74 0.00 39.38 3.71
5538 5610 5.167845 GCAAATATTTTGCCTCCTTTTCGA 58.832 37.500 12.74 0.00 39.38 3.71
5539 5611 5.454736 GCAAATATTTTGCCTCCTTTTCG 57.545 39.130 12.74 0.00 39.38 3.46
5549 5621 7.928908 TTAATCGATGAGGCAAATATTTTGC 57.071 32.000 14.88 14.88 44.22 3.68
5556 5628 9.342308 TCTTCTTAATTAATCGATGAGGCAAAT 57.658 29.630 0.00 0.00 0.00 2.32
5557 5629 8.731275 TCTTCTTAATTAATCGATGAGGCAAA 57.269 30.769 0.00 0.00 0.00 3.68
5558 5630 8.731275 TTCTTCTTAATTAATCGATGAGGCAA 57.269 30.769 0.00 0.00 0.00 4.52
5559 5631 8.204160 TCTTCTTCTTAATTAATCGATGAGGCA 58.796 33.333 0.00 0.00 0.00 4.75
5560 5632 8.594881 TCTTCTTCTTAATTAATCGATGAGGC 57.405 34.615 0.00 0.00 0.00 4.70
5561 5633 9.973450 TCTCTTCTTCTTAATTAATCGATGAGG 57.027 33.333 19.96 13.97 0.00 3.86
5567 5639 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
5568 5640 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
5569 5641 9.479549 TGGGCAATTCTCTTCTTCTTAATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
5570 5642 8.877864 TGGGCAATTCTCTTCTTCTTAATTAA 57.122 30.769 0.00 0.00 0.00 1.40
5571 5643 8.109634 ACTGGGCAATTCTCTTCTTCTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
5572 5644 6.950619 ACTGGGCAATTCTCTTCTTCTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
5573 5645 6.488715 ACTGGGCAATTCTCTTCTTCTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
5574 5646 5.880901 ACTGGGCAATTCTCTTCTTCTTAA 58.119 37.500 0.00 0.00 0.00 1.85
5575 5647 5.505181 ACTGGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
5576 5648 4.379302 ACTGGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
5577 5649 4.379302 AACTGGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
5578 5650 6.765915 ATTAACTGGGCAATTCTCTTCTTC 57.234 37.500 0.00 0.00 0.00 2.87
5579 5651 8.523658 GTTAATTAACTGGGCAATTCTCTTCTT 58.476 33.333 19.07 0.00 33.52 2.52
5580 5652 7.148239 CGTTAATTAACTGGGCAATTCTCTTCT 60.148 37.037 22.57 0.00 34.12 2.85
5581 5653 6.967199 CGTTAATTAACTGGGCAATTCTCTTC 59.033 38.462 22.57 0.00 34.12 2.87
5582 5654 6.127730 CCGTTAATTAACTGGGCAATTCTCTT 60.128 38.462 22.57 0.00 34.12 2.85
5583 5655 5.357032 CCGTTAATTAACTGGGCAATTCTCT 59.643 40.000 22.57 0.00 34.12 3.10
5584 5656 5.355910 TCCGTTAATTAACTGGGCAATTCTC 59.644 40.000 25.42 2.87 33.65 2.87
5585 5657 5.258051 TCCGTTAATTAACTGGGCAATTCT 58.742 37.500 25.42 0.00 33.65 2.40
5586 5658 5.570234 TCCGTTAATTAACTGGGCAATTC 57.430 39.130 25.42 3.42 33.65 2.17
5587 5659 5.986501 TTCCGTTAATTAACTGGGCAATT 57.013 34.783 25.42 0.00 33.65 2.32
5588 5660 5.986501 TTTCCGTTAATTAACTGGGCAAT 57.013 34.783 25.42 0.00 33.65 3.56
5589 5661 5.302313 AGTTTTCCGTTAATTAACTGGGCAA 59.698 36.000 25.42 19.34 33.65 4.52
5590 5662 4.828387 AGTTTTCCGTTAATTAACTGGGCA 59.172 37.500 25.42 16.39 33.65 5.36
5591 5663 5.158494 CAGTTTTCCGTTAATTAACTGGGC 58.842 41.667 25.42 17.70 41.05 5.36
5594 5666 5.158494 GCCCAGTTTTCCGTTAATTAACTG 58.842 41.667 22.57 17.46 43.17 3.16
5595 5667 4.828387 TGCCCAGTTTTCCGTTAATTAACT 59.172 37.500 22.57 4.48 34.12 2.24
5596 5668 5.123805 TGCCCAGTTTTCCGTTAATTAAC 57.876 39.130 16.87 16.87 0.00 2.01
5597 5669 5.786264 TTGCCCAGTTTTCCGTTAATTAA 57.214 34.783 0.00 0.00 0.00 1.40
5598 5670 5.786264 TTTGCCCAGTTTTCCGTTAATTA 57.214 34.783 0.00 0.00 0.00 1.40
5599 5671 4.674281 TTTGCCCAGTTTTCCGTTAATT 57.326 36.364 0.00 0.00 0.00 1.40
5600 5672 4.674281 TTTTGCCCAGTTTTCCGTTAAT 57.326 36.364 0.00 0.00 0.00 1.40
5601 5673 4.182339 GTTTTTGCCCAGTTTTCCGTTAA 58.818 39.130 0.00 0.00 0.00 2.01
5602 5674 3.430513 GGTTTTTGCCCAGTTTTCCGTTA 60.431 43.478 0.00 0.00 0.00 3.18
5603 5675 2.623535 GTTTTTGCCCAGTTTTCCGTT 58.376 42.857 0.00 0.00 0.00 4.44
5604 5676 1.134640 GGTTTTTGCCCAGTTTTCCGT 60.135 47.619 0.00 0.00 0.00 4.69
5605 5677 1.577468 GGTTTTTGCCCAGTTTTCCG 58.423 50.000 0.00 0.00 0.00 4.30
5606 5678 1.137282 TCGGTTTTTGCCCAGTTTTCC 59.863 47.619 0.00 0.00 0.00 3.13
5607 5679 2.588027 TCGGTTTTTGCCCAGTTTTC 57.412 45.000 0.00 0.00 0.00 2.29
5608 5680 3.385111 TGTATCGGTTTTTGCCCAGTTTT 59.615 39.130 0.00 0.00 0.00 2.43
5609 5681 2.959707 TGTATCGGTTTTTGCCCAGTTT 59.040 40.909 0.00 0.00 0.00 2.66
5610 5682 2.588620 TGTATCGGTTTTTGCCCAGTT 58.411 42.857 0.00 0.00 0.00 3.16
5611 5683 2.279935 TGTATCGGTTTTTGCCCAGT 57.720 45.000 0.00 0.00 0.00 4.00
5612 5684 5.995282 TCTATATGTATCGGTTTTTGCCCAG 59.005 40.000 0.00 0.00 0.00 4.45
5613 5685 5.761234 GTCTATATGTATCGGTTTTTGCCCA 59.239 40.000 0.00 0.00 0.00 5.36
5614 5686 5.180680 GGTCTATATGTATCGGTTTTTGCCC 59.819 44.000 0.00 0.00 0.00 5.36
5615 5687 5.761234 TGGTCTATATGTATCGGTTTTTGCC 59.239 40.000 0.00 0.00 0.00 4.52
5616 5688 6.563381 CGTGGTCTATATGTATCGGTTTTTGC 60.563 42.308 0.00 0.00 0.00 3.68
5617 5689 6.477688 ACGTGGTCTATATGTATCGGTTTTTG 59.522 38.462 0.00 0.00 0.00 2.44
5618 5690 6.477688 CACGTGGTCTATATGTATCGGTTTTT 59.522 38.462 7.95 0.00 0.00 1.94
5619 5691 5.981315 CACGTGGTCTATATGTATCGGTTTT 59.019 40.000 7.95 0.00 0.00 2.43
5620 5692 5.526115 CACGTGGTCTATATGTATCGGTTT 58.474 41.667 7.95 0.00 0.00 3.27
5621 5693 4.558095 GCACGTGGTCTATATGTATCGGTT 60.558 45.833 18.88 0.00 0.00 4.44
5622 5694 3.057736 GCACGTGGTCTATATGTATCGGT 60.058 47.826 18.88 0.00 0.00 4.69
5623 5695 3.499048 GCACGTGGTCTATATGTATCGG 58.501 50.000 18.88 0.00 0.00 4.18
5624 5696 3.161306 CGCACGTGGTCTATATGTATCG 58.839 50.000 18.88 3.25 0.00 2.92
5625 5697 3.189910 TCCGCACGTGGTCTATATGTATC 59.810 47.826 18.88 0.00 0.00 2.24
5626 5698 3.057736 GTCCGCACGTGGTCTATATGTAT 60.058 47.826 18.88 0.00 0.00 2.29
5627 5699 2.291465 GTCCGCACGTGGTCTATATGTA 59.709 50.000 18.88 0.00 0.00 2.29
5628 5700 1.066605 GTCCGCACGTGGTCTATATGT 59.933 52.381 18.88 0.00 0.00 2.29
5629 5701 1.337071 AGTCCGCACGTGGTCTATATG 59.663 52.381 18.88 0.00 0.00 1.78
5630 5702 1.688772 AGTCCGCACGTGGTCTATAT 58.311 50.000 18.88 0.00 0.00 0.86
5631 5703 1.942657 GTAGTCCGCACGTGGTCTATA 59.057 52.381 18.88 0.00 33.30 1.31
5632 5704 0.737219 GTAGTCCGCACGTGGTCTAT 59.263 55.000 18.88 0.00 33.30 1.98
5633 5705 0.321919 AGTAGTCCGCACGTGGTCTA 60.322 55.000 18.88 6.25 0.00 2.59
5634 5706 1.177256 AAGTAGTCCGCACGTGGTCT 61.177 55.000 18.88 7.29 0.00 3.85
5635 5707 1.007336 CAAGTAGTCCGCACGTGGTC 61.007 60.000 18.88 0.00 0.00 4.02
5636 5708 1.006571 CAAGTAGTCCGCACGTGGT 60.007 57.895 18.88 0.00 0.00 4.16
5637 5709 2.380410 GCAAGTAGTCCGCACGTGG 61.380 63.158 18.88 7.38 0.00 4.94
5638 5710 0.109458 TAGCAAGTAGTCCGCACGTG 60.109 55.000 12.28 12.28 0.00 4.49
5639 5711 0.599558 TTAGCAAGTAGTCCGCACGT 59.400 50.000 0.00 0.00 0.00 4.49
5640 5712 1.135489 TCTTAGCAAGTAGTCCGCACG 60.135 52.381 0.00 0.00 0.00 5.34
5641 5713 2.163815 TCTCTTAGCAAGTAGTCCGCAC 59.836 50.000 0.00 0.00 0.00 5.34
5642 5714 2.423892 CTCTCTTAGCAAGTAGTCCGCA 59.576 50.000 0.00 0.00 0.00 5.69
5643 5715 2.683867 TCTCTCTTAGCAAGTAGTCCGC 59.316 50.000 0.00 0.00 0.00 5.54
5644 5716 4.966965 TTCTCTCTTAGCAAGTAGTCCG 57.033 45.455 0.00 0.00 0.00 4.79
5645 5717 6.275494 AGTTTCTCTCTTAGCAAGTAGTCC 57.725 41.667 0.00 0.00 0.00 3.85
5646 5718 6.071840 TGGAGTTTCTCTCTTAGCAAGTAGTC 60.072 42.308 0.00 0.00 42.40 2.59
5647 5719 5.775701 TGGAGTTTCTCTCTTAGCAAGTAGT 59.224 40.000 0.00 0.00 42.40 2.73
5648 5720 6.274157 TGGAGTTTCTCTCTTAGCAAGTAG 57.726 41.667 0.00 0.00 42.40 2.57
5649 5721 6.437477 TCATGGAGTTTCTCTCTTAGCAAGTA 59.563 38.462 0.00 0.00 42.40 2.24
5650 5722 5.247110 TCATGGAGTTTCTCTCTTAGCAAGT 59.753 40.000 0.00 0.00 42.40 3.16
5651 5723 5.580297 GTCATGGAGTTTCTCTCTTAGCAAG 59.420 44.000 0.00 0.00 42.40 4.01
5652 5724 5.482908 GTCATGGAGTTTCTCTCTTAGCAA 58.517 41.667 0.00 0.00 42.40 3.91
5653 5725 4.081420 GGTCATGGAGTTTCTCTCTTAGCA 60.081 45.833 0.00 0.00 42.40 3.49
5654 5726 4.438148 GGTCATGGAGTTTCTCTCTTAGC 58.562 47.826 0.00 0.00 42.40 3.09
5655 5727 4.467795 TGGGTCATGGAGTTTCTCTCTTAG 59.532 45.833 0.00 0.00 42.40 2.18
5656 5728 4.425772 TGGGTCATGGAGTTTCTCTCTTA 58.574 43.478 0.00 0.00 42.40 2.10
5657 5729 3.251484 TGGGTCATGGAGTTTCTCTCTT 58.749 45.455 0.00 0.00 42.40 2.85
5658 5730 2.907892 TGGGTCATGGAGTTTCTCTCT 58.092 47.619 0.00 0.00 42.40 3.10
5659 5731 3.244561 TGTTGGGTCATGGAGTTTCTCTC 60.245 47.826 0.00 0.00 42.07 3.20
5660 5732 2.711009 TGTTGGGTCATGGAGTTTCTCT 59.289 45.455 0.00 0.00 0.00 3.10
5661 5733 2.814336 GTGTTGGGTCATGGAGTTTCTC 59.186 50.000 0.00 0.00 0.00 2.87
5662 5734 2.443255 AGTGTTGGGTCATGGAGTTTCT 59.557 45.455 0.00 0.00 0.00 2.52
5663 5735 2.814336 GAGTGTTGGGTCATGGAGTTTC 59.186 50.000 0.00 0.00 0.00 2.78
5664 5736 2.489073 GGAGTGTTGGGTCATGGAGTTT 60.489 50.000 0.00 0.00 0.00 2.66
5665 5737 1.073923 GGAGTGTTGGGTCATGGAGTT 59.926 52.381 0.00 0.00 0.00 3.01
5666 5738 0.693049 GGAGTGTTGGGTCATGGAGT 59.307 55.000 0.00 0.00 0.00 3.85
5667 5739 0.692476 TGGAGTGTTGGGTCATGGAG 59.308 55.000 0.00 0.00 0.00 3.86
5668 5740 1.004628 CATGGAGTGTTGGGTCATGGA 59.995 52.381 0.00 0.00 33.60 3.41
5669 5741 1.004628 TCATGGAGTGTTGGGTCATGG 59.995 52.381 0.00 0.00 36.72 3.66
5670 5742 2.086869 GTCATGGAGTGTTGGGTCATG 58.913 52.381 0.00 0.00 37.23 3.07
5671 5743 1.004745 GGTCATGGAGTGTTGGGTCAT 59.995 52.381 0.00 0.00 0.00 3.06
5672 5744 0.400213 GGTCATGGAGTGTTGGGTCA 59.600 55.000 0.00 0.00 0.00 4.02
5673 5745 0.322546 GGGTCATGGAGTGTTGGGTC 60.323 60.000 0.00 0.00 0.00 4.46
5674 5746 1.065410 TGGGTCATGGAGTGTTGGGT 61.065 55.000 0.00 0.00 0.00 4.51
5675 5747 0.112218 TTGGGTCATGGAGTGTTGGG 59.888 55.000 0.00 0.00 0.00 4.12
5676 5748 1.247567 GTTGGGTCATGGAGTGTTGG 58.752 55.000 0.00 0.00 0.00 3.77
5677 5749 0.874390 CGTTGGGTCATGGAGTGTTG 59.126 55.000 0.00 0.00 0.00 3.33
5678 5750 0.250727 CCGTTGGGTCATGGAGTGTT 60.251 55.000 0.00 0.00 0.00 3.32
5679 5751 1.374947 CCGTTGGGTCATGGAGTGT 59.625 57.895 0.00 0.00 0.00 3.55
5680 5752 1.374947 ACCGTTGGGTCATGGAGTG 59.625 57.895 0.00 0.00 46.01 3.51
5681 5753 3.900888 ACCGTTGGGTCATGGAGT 58.099 55.556 0.00 0.00 46.01 3.85
5698 5770 2.045561 ATGTGTGTTTGTCGGGTTGA 57.954 45.000 0.00 0.00 0.00 3.18
5699 5771 3.314080 ACTTATGTGTGTTTGTCGGGTTG 59.686 43.478 0.00 0.00 0.00 3.77
5700 5772 3.547746 ACTTATGTGTGTTTGTCGGGTT 58.452 40.909 0.00 0.00 0.00 4.11
5701 5773 3.135994 GACTTATGTGTGTTTGTCGGGT 58.864 45.455 0.00 0.00 0.00 5.28
5702 5774 2.156891 CGACTTATGTGTGTTTGTCGGG 59.843 50.000 0.00 0.00 42.06 5.14
5703 5775 2.411031 GCGACTTATGTGTGTTTGTCGG 60.411 50.000 13.71 0.00 44.69 4.79
5704 5776 2.219903 TGCGACTTATGTGTGTTTGTCG 59.780 45.455 8.65 8.65 46.45 4.35
5705 5777 3.870723 TGCGACTTATGTGTGTTTGTC 57.129 42.857 0.00 0.00 0.00 3.18
5706 5778 3.375610 TGTTGCGACTTATGTGTGTTTGT 59.624 39.130 5.50 0.00 0.00 2.83
5707 5779 3.946402 TGTTGCGACTTATGTGTGTTTG 58.054 40.909 5.50 0.00 0.00 2.93
5708 5780 4.347813 GTTGTTGCGACTTATGTGTGTTT 58.652 39.130 5.50 0.00 0.00 2.83
5709 5781 3.242936 GGTTGTTGCGACTTATGTGTGTT 60.243 43.478 5.50 0.00 0.00 3.32
5710 5782 2.289547 GGTTGTTGCGACTTATGTGTGT 59.710 45.455 5.50 0.00 0.00 3.72
5711 5783 2.289274 TGGTTGTTGCGACTTATGTGTG 59.711 45.455 5.50 0.00 0.00 3.82
5712 5784 2.289547 GTGGTTGTTGCGACTTATGTGT 59.710 45.455 5.50 0.00 0.00 3.72
5713 5785 2.289274 TGTGGTTGTTGCGACTTATGTG 59.711 45.455 5.50 0.00 0.00 3.21
5714 5786 2.566913 TGTGGTTGTTGCGACTTATGT 58.433 42.857 5.50 0.00 0.00 2.29
5715 5787 3.617540 TTGTGGTTGTTGCGACTTATG 57.382 42.857 5.50 0.00 0.00 1.90
5716 5788 3.190535 GGATTGTGGTTGTTGCGACTTAT 59.809 43.478 5.50 0.00 0.00 1.73
5717 5789 2.550606 GGATTGTGGTTGTTGCGACTTA 59.449 45.455 5.50 0.00 0.00 2.24
5718 5790 1.336755 GGATTGTGGTTGTTGCGACTT 59.663 47.619 5.50 0.00 0.00 3.01
5719 5791 0.951558 GGATTGTGGTTGTTGCGACT 59.048 50.000 5.50 0.00 0.00 4.18
5720 5792 0.039527 GGGATTGTGGTTGTTGCGAC 60.040 55.000 0.00 0.00 0.00 5.19
5721 5793 0.179004 AGGGATTGTGGTTGTTGCGA 60.179 50.000 0.00 0.00 0.00 5.10
5722 5794 0.240945 GAGGGATTGTGGTTGTTGCG 59.759 55.000 0.00 0.00 0.00 4.85
5723 5795 1.000274 GTGAGGGATTGTGGTTGTTGC 60.000 52.381 0.00 0.00 0.00 4.17
5724 5796 2.034558 GTGTGAGGGATTGTGGTTGTTG 59.965 50.000 0.00 0.00 0.00 3.33
5725 5797 2.091885 AGTGTGAGGGATTGTGGTTGTT 60.092 45.455 0.00 0.00 0.00 2.83
5726 5798 1.494721 AGTGTGAGGGATTGTGGTTGT 59.505 47.619 0.00 0.00 0.00 3.32
5727 5799 2.276732 AGTGTGAGGGATTGTGGTTG 57.723 50.000 0.00 0.00 0.00 3.77
5728 5800 2.443255 AGAAGTGTGAGGGATTGTGGTT 59.557 45.455 0.00 0.00 0.00 3.67
5729 5801 2.057922 AGAAGTGTGAGGGATTGTGGT 58.942 47.619 0.00 0.00 0.00 4.16
5730 5802 2.867109 AGAAGTGTGAGGGATTGTGG 57.133 50.000 0.00 0.00 0.00 4.17
5731 5803 4.836825 ACATAGAAGTGTGAGGGATTGTG 58.163 43.478 0.00 0.00 0.00 3.33
5732 5804 5.221925 ACAACATAGAAGTGTGAGGGATTGT 60.222 40.000 0.00 0.00 31.49 2.71
5733 5805 5.248640 ACAACATAGAAGTGTGAGGGATTG 58.751 41.667 0.00 0.00 31.49 2.67
5734 5806 5.505181 ACAACATAGAAGTGTGAGGGATT 57.495 39.130 0.00 0.00 31.49 3.01
5735 5807 6.620877 TTACAACATAGAAGTGTGAGGGAT 57.379 37.500 0.00 0.00 31.49 3.85
5736 5808 6.269077 TCTTTACAACATAGAAGTGTGAGGGA 59.731 38.462 0.00 0.00 31.49 4.20
5737 5809 6.464222 TCTTTACAACATAGAAGTGTGAGGG 58.536 40.000 0.00 0.00 31.49 4.30
5738 5810 7.962964 TTCTTTACAACATAGAAGTGTGAGG 57.037 36.000 0.00 0.00 31.49 3.86
5739 5811 8.283291 GGTTTCTTTACAACATAGAAGTGTGAG 58.717 37.037 0.00 0.00 31.49 3.51
5740 5812 7.227910 GGGTTTCTTTACAACATAGAAGTGTGA 59.772 37.037 0.00 0.00 31.49 3.58
5741 5813 7.360361 GGGTTTCTTTACAACATAGAAGTGTG 58.640 38.462 0.00 0.00 31.49 3.82
5742 5814 6.489022 GGGGTTTCTTTACAACATAGAAGTGT 59.511 38.462 0.00 0.00 30.32 3.55
5743 5815 6.072119 GGGGGTTTCTTTACAACATAGAAGTG 60.072 42.308 0.00 0.00 30.32 3.16
5744 5816 6.008331 GGGGGTTTCTTTACAACATAGAAGT 58.992 40.000 0.00 0.00 30.32 3.01
5745 5817 6.007703 TGGGGGTTTCTTTACAACATAGAAG 58.992 40.000 0.00 0.00 30.32 2.85
5746 5818 5.954757 TGGGGGTTTCTTTACAACATAGAA 58.045 37.500 0.00 0.00 0.00 2.10
5747 5819 5.586155 TGGGGGTTTCTTTACAACATAGA 57.414 39.130 0.00 0.00 0.00 1.98
5748 5820 5.335348 CGTTGGGGGTTTCTTTACAACATAG 60.335 44.000 0.00 0.00 38.39 2.23
5749 5821 4.519730 CGTTGGGGGTTTCTTTACAACATA 59.480 41.667 0.00 0.00 38.39 2.29
5750 5822 3.319689 CGTTGGGGGTTTCTTTACAACAT 59.680 43.478 0.00 0.00 38.39 2.71
5751 5823 2.688958 CGTTGGGGGTTTCTTTACAACA 59.311 45.455 0.00 0.00 38.39 3.33
5752 5824 2.950975 TCGTTGGGGGTTTCTTTACAAC 59.049 45.455 0.00 0.00 35.96 3.32
5753 5825 3.294038 TCGTTGGGGGTTTCTTTACAA 57.706 42.857 0.00 0.00 0.00 2.41
5754 5826 3.294038 TTCGTTGGGGGTTTCTTTACA 57.706 42.857 0.00 0.00 0.00 2.41
5755 5827 3.243501 GGTTTCGTTGGGGGTTTCTTTAC 60.244 47.826 0.00 0.00 0.00 2.01
5756 5828 2.957680 GGTTTCGTTGGGGGTTTCTTTA 59.042 45.455 0.00 0.00 0.00 1.85
5757 5829 1.758280 GGTTTCGTTGGGGGTTTCTTT 59.242 47.619 0.00 0.00 0.00 2.52
5758 5830 1.342175 TGGTTTCGTTGGGGGTTTCTT 60.342 47.619 0.00 0.00 0.00 2.52
5759 5831 0.259356 TGGTTTCGTTGGGGGTTTCT 59.741 50.000 0.00 0.00 0.00 2.52
5760 5832 1.067974 CTTGGTTTCGTTGGGGGTTTC 59.932 52.381 0.00 0.00 0.00 2.78
5761 5833 1.116308 CTTGGTTTCGTTGGGGGTTT 58.884 50.000 0.00 0.00 0.00 3.27
5762 5834 0.757561 CCTTGGTTTCGTTGGGGGTT 60.758 55.000 0.00 0.00 0.00 4.11
5763 5835 1.152631 CCTTGGTTTCGTTGGGGGT 60.153 57.895 0.00 0.00 0.00 4.95
5764 5836 0.757561 AACCTTGGTTTCGTTGGGGG 60.758 55.000 0.00 0.00 0.00 5.40
5765 5837 0.387565 CAACCTTGGTTTCGTTGGGG 59.612 55.000 1.76 0.00 34.55 4.96
5766 5838 1.394618 TCAACCTTGGTTTCGTTGGG 58.605 50.000 1.76 0.00 37.93 4.12
5767 5839 2.223711 CCTTCAACCTTGGTTTCGTTGG 60.224 50.000 1.76 0.00 37.93 3.77
5768 5840 2.798145 GCCTTCAACCTTGGTTTCGTTG 60.798 50.000 1.76 0.00 38.56 4.10
5769 5841 1.407618 GCCTTCAACCTTGGTTTCGTT 59.592 47.619 1.76 0.00 0.00 3.85
5770 5842 1.029681 GCCTTCAACCTTGGTTTCGT 58.970 50.000 1.76 0.00 0.00 3.85
5771 5843 1.028905 TGCCTTCAACCTTGGTTTCG 58.971 50.000 1.76 0.00 0.00 3.46
5772 5844 2.821546 GTTGCCTTCAACCTTGGTTTC 58.178 47.619 1.76 0.00 45.15 2.78
5773 5845 2.979814 GTTGCCTTCAACCTTGGTTT 57.020 45.000 1.76 0.00 45.15 3.27
5782 5854 2.235016 GGTGGTATGTGTTGCCTTCAA 58.765 47.619 0.00 0.00 0.00 2.69
5783 5855 1.143889 TGGTGGTATGTGTTGCCTTCA 59.856 47.619 0.00 0.00 0.00 3.02
5784 5856 1.904287 TGGTGGTATGTGTTGCCTTC 58.096 50.000 0.00 0.00 0.00 3.46
5785 5857 2.373335 TTGGTGGTATGTGTTGCCTT 57.627 45.000 0.00 0.00 0.00 4.35
5786 5858 2.373335 TTTGGTGGTATGTGTTGCCT 57.627 45.000 0.00 0.00 0.00 4.75
5787 5859 2.094234 GGATTTGGTGGTATGTGTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
5788 5860 2.560542 TGGATTTGGTGGTATGTGTTGC 59.439 45.455 0.00 0.00 0.00 4.17
5789 5861 3.571828 TGTGGATTTGGTGGTATGTGTTG 59.428 43.478 0.00 0.00 0.00 3.33
5790 5862 3.838565 TGTGGATTTGGTGGTATGTGTT 58.161 40.909 0.00 0.00 0.00 3.32
5791 5863 3.517296 TGTGGATTTGGTGGTATGTGT 57.483 42.857 0.00 0.00 0.00 3.72
5792 5864 4.862902 TTTGTGGATTTGGTGGTATGTG 57.137 40.909 0.00 0.00 0.00 3.21
5793 5865 5.124776 CGTATTTGTGGATTTGGTGGTATGT 59.875 40.000 0.00 0.00 0.00 2.29
5794 5866 5.355630 TCGTATTTGTGGATTTGGTGGTATG 59.644 40.000 0.00 0.00 0.00 2.39
5795 5867 5.502079 TCGTATTTGTGGATTTGGTGGTAT 58.498 37.500 0.00 0.00 0.00 2.73
5796 5868 4.907809 TCGTATTTGTGGATTTGGTGGTA 58.092 39.130 0.00 0.00 0.00 3.25
5797 5869 3.756434 CTCGTATTTGTGGATTTGGTGGT 59.244 43.478 0.00 0.00 0.00 4.16
5798 5870 3.427503 GCTCGTATTTGTGGATTTGGTGG 60.428 47.826 0.00 0.00 0.00 4.61
5799 5871 3.427503 GGCTCGTATTTGTGGATTTGGTG 60.428 47.826 0.00 0.00 0.00 4.17
5800 5872 2.752903 GGCTCGTATTTGTGGATTTGGT 59.247 45.455 0.00 0.00 0.00 3.67
5801 5873 2.752354 TGGCTCGTATTTGTGGATTTGG 59.248 45.455 0.00 0.00 0.00 3.28
5802 5874 3.440173 ACTGGCTCGTATTTGTGGATTTG 59.560 43.478 0.00 0.00 0.00 2.32
5803 5875 3.686016 ACTGGCTCGTATTTGTGGATTT 58.314 40.909 0.00 0.00 0.00 2.17
5804 5876 3.350219 ACTGGCTCGTATTTGTGGATT 57.650 42.857 0.00 0.00 0.00 3.01
5805 5877 3.009723 CAACTGGCTCGTATTTGTGGAT 58.990 45.455 0.00 0.00 0.00 3.41
5806 5878 2.422597 CAACTGGCTCGTATTTGTGGA 58.577 47.619 0.00 0.00 0.00 4.02
5807 5879 1.468520 CCAACTGGCTCGTATTTGTGG 59.531 52.381 0.00 0.00 0.00 4.17
5808 5880 2.416547 CTCCAACTGGCTCGTATTTGTG 59.583 50.000 0.00 0.00 34.44 3.33
5809 5881 2.301870 TCTCCAACTGGCTCGTATTTGT 59.698 45.455 0.00 0.00 34.44 2.83
5810 5882 2.972625 TCTCCAACTGGCTCGTATTTG 58.027 47.619 0.00 0.00 34.44 2.32
5811 5883 3.197766 TCATCTCCAACTGGCTCGTATTT 59.802 43.478 0.00 0.00 34.44 1.40
5812 5884 2.766263 TCATCTCCAACTGGCTCGTATT 59.234 45.455 0.00 0.00 34.44 1.89
5813 5885 2.388735 TCATCTCCAACTGGCTCGTAT 58.611 47.619 0.00 0.00 34.44 3.06
5814 5886 1.847328 TCATCTCCAACTGGCTCGTA 58.153 50.000 0.00 0.00 34.44 3.43
5815 5887 1.134580 CATCATCTCCAACTGGCTCGT 60.135 52.381 0.00 0.00 34.44 4.18
5816 5888 1.579698 CATCATCTCCAACTGGCTCG 58.420 55.000 0.00 0.00 34.44 5.03
5817 5889 1.211457 ACCATCATCTCCAACTGGCTC 59.789 52.381 0.00 0.00 34.44 4.70
5818 5890 1.211457 GACCATCATCTCCAACTGGCT 59.789 52.381 0.00 0.00 34.44 4.75
5819 5891 1.673168 GACCATCATCTCCAACTGGC 58.327 55.000 0.00 0.00 34.44 4.85
5820 5892 1.482182 TCGACCATCATCTCCAACTGG 59.518 52.381 0.00 0.00 0.00 4.00
5821 5893 2.967599 TCGACCATCATCTCCAACTG 57.032 50.000 0.00 0.00 0.00 3.16
5822 5894 3.099905 TCTTCGACCATCATCTCCAACT 58.900 45.455 0.00 0.00 0.00 3.16
5823 5895 3.131223 TCTCTTCGACCATCATCTCCAAC 59.869 47.826 0.00 0.00 0.00 3.77
5824 5896 3.365472 TCTCTTCGACCATCATCTCCAA 58.635 45.455 0.00 0.00 0.00 3.53
5825 5897 3.018423 TCTCTTCGACCATCATCTCCA 57.982 47.619 0.00 0.00 0.00 3.86
5826 5898 4.599047 AATCTCTTCGACCATCATCTCC 57.401 45.455 0.00 0.00 0.00 3.71
5827 5899 5.595885 TGAAATCTCTTCGACCATCATCTC 58.404 41.667 0.00 0.00 0.00 2.75
5828 5900 5.604758 TGAAATCTCTTCGACCATCATCT 57.395 39.130 0.00 0.00 0.00 2.90
5829 5901 6.857777 AATGAAATCTCTTCGACCATCATC 57.142 37.500 0.00 0.00 0.00 2.92
5830 5902 6.261826 GGAAATGAAATCTCTTCGACCATCAT 59.738 38.462 0.00 0.00 0.00 2.45
5831 5903 5.586243 GGAAATGAAATCTCTTCGACCATCA 59.414 40.000 0.00 0.00 0.00 3.07
5832 5904 5.586243 TGGAAATGAAATCTCTTCGACCATC 59.414 40.000 0.00 0.00 0.00 3.51
5833 5905 5.500234 TGGAAATGAAATCTCTTCGACCAT 58.500 37.500 0.00 0.00 0.00 3.55
5834 5906 4.905429 TGGAAATGAAATCTCTTCGACCA 58.095 39.130 0.00 0.00 0.00 4.02
5835 5907 6.538742 TGTATGGAAATGAAATCTCTTCGACC 59.461 38.462 0.00 0.00 0.00 4.79
5836 5908 7.539712 TGTATGGAAATGAAATCTCTTCGAC 57.460 36.000 0.00 0.00 0.00 4.20
5837 5909 8.615211 CATTGTATGGAAATGAAATCTCTTCGA 58.385 33.333 0.00 0.00 37.22 3.71
5838 5910 8.400947 ACATTGTATGGAAATGAAATCTCTTCG 58.599 33.333 3.32 0.00 38.21 3.79
5841 5913 9.471702 AGAACATTGTATGGAAATGAAATCTCT 57.528 29.630 3.32 0.00 38.21 3.10
5842 5914 9.727627 GAGAACATTGTATGGAAATGAAATCTC 57.272 33.333 3.32 8.54 38.21 2.75
5843 5915 9.471702 AGAGAACATTGTATGGAAATGAAATCT 57.528 29.630 3.32 4.14 38.21 2.40
5953 6033 6.985645 GGGCATTTGCTTCATGTTTATATTGA 59.014 34.615 2.12 0.00 41.70 2.57
5965 6046 1.344114 GAAACTGGGGCATTTGCTTCA 59.656 47.619 2.12 1.06 41.70 3.02
5976 6057 1.355720 AGGAATGGTCAGAAACTGGGG 59.644 52.381 0.00 0.00 31.51 4.96
6000 6081 6.379386 GTTGCTTACATTCCCTACTGAAAAC 58.621 40.000 0.00 0.00 0.00 2.43
6024 6105 1.571919 GCTTCATAGCCTGTACACGG 58.428 55.000 0.00 0.00 41.74 4.94
6035 6116 2.352960 GGAGGCAAACGAAGCTTCATAG 59.647 50.000 25.47 12.26 39.57 2.23
6054 6135 2.551270 ACTTCCTAAGCATGTCAGGGA 58.449 47.619 8.83 3.38 0.00 4.20
6108 6191 9.823647 CATCTCTTACACAATACTCCATAAACT 57.176 33.333 0.00 0.00 0.00 2.66
6109 6192 9.817809 TCATCTCTTACACAATACTCCATAAAC 57.182 33.333 0.00 0.00 0.00 2.01
6117 6200 9.836864 TGCATTAATCATCTCTTACACAATACT 57.163 29.630 0.00 0.00 0.00 2.12
6212 6378 1.535226 GCAAACTGGTTCCCGTGAAAC 60.535 52.381 0.00 0.00 38.74 2.78
6307 9925 1.283321 GAGTTTTCCTCCAGATGGGCT 59.717 52.381 0.00 0.00 36.21 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.