Multiple sequence alignment - TraesCS1D01G160300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G160300 chr1D 100.000 4654 0 0 1 4654 226941710 226946363 0.000000e+00 8595
1 TraesCS1D01G160300 chr1D 88.730 1952 126 39 2368 4260 227374625 227376541 0.000000e+00 2300
2 TraesCS1D01G160300 chr1D 90.089 1352 107 19 1045 2383 227373210 227374547 0.000000e+00 1729
3 TraesCS1D01G160300 chr1D 88.235 1360 119 14 1785 3140 208416420 208415098 0.000000e+00 1587
4 TraesCS1D01G160300 chr1D 88.454 1022 84 9 1413 2425 226825346 226826342 0.000000e+00 1203
5 TraesCS1D01G160300 chr1D 89.403 821 68 10 3455 4260 226827568 226828384 0.000000e+00 1016
6 TraesCS1D01G160300 chr1D 87.612 896 82 18 3345 4232 223164293 223165167 0.000000e+00 1013
7 TraesCS1D01G160300 chr1D 85.961 983 84 17 3259 4219 208413314 208412364 0.000000e+00 1002
8 TraesCS1D01G160300 chr1D 89.778 675 50 12 2472 3140 226826316 226826977 0.000000e+00 846
9 TraesCS1D01G160300 chr1D 87.537 674 58 12 458 1109 227372567 227373236 0.000000e+00 756
10 TraesCS1D01G160300 chr1D 87.635 647 62 6 1785 2425 227647998 227648632 0.000000e+00 736
11 TraesCS1D01G160300 chr1D 87.914 604 55 12 3526 4116 226469218 226469816 0.000000e+00 695
12 TraesCS1D01G160300 chr1D 90.748 508 38 3 2607 3113 261723862 261724361 0.000000e+00 669
13 TraesCS1D01G160300 chr1D 85.648 648 62 15 2472 3113 227648606 227649228 0.000000e+00 652
14 TraesCS1D01G160300 chr1D 89.852 473 40 7 1316 1785 227646984 227647451 6.660000e-168 601
15 TraesCS1D01G160300 chr1D 89.633 463 39 5 1324 1785 208417416 208416962 8.680000e-162 580
16 TraesCS1D01G160300 chr1D 92.746 386 19 6 270 648 227372182 227372565 2.450000e-152 549
17 TraesCS1D01G160300 chr1D 82.143 560 67 19 516 1058 261722002 261722545 2.550000e-122 449
18 TraesCS1D01G160300 chr1D 85.185 324 30 10 3144 3450 226827011 226827333 2.700000e-82 316
19 TraesCS1D01G160300 chr1D 78.997 319 29 23 561 856 208418535 208418232 2.860000e-42 183
20 TraesCS1D01G160300 chr1D 85.965 171 16 5 4057 4219 227650294 227650464 4.790000e-40 176
21 TraesCS1D01G160300 chr1D 83.221 149 14 8 390 529 227372430 227372576 4.890000e-25 126
22 TraesCS1D01G160300 chr1B 94.266 2546 89 15 2039 4569 326912860 326915363 0.000000e+00 3840
23 TraesCS1D01G160300 chr1B 96.098 1794 56 9 264 2053 326911060 326912843 0.000000e+00 2913
24 TraesCS1D01G160300 chr1B 89.971 2104 162 19 1045 3140 327227295 327229357 0.000000e+00 2671
25 TraesCS1D01G160300 chr1B 88.465 1153 75 20 3139 4260 327229390 327230515 0.000000e+00 1339
26 TraesCS1D01G160300 chr1B 84.562 1004 128 17 1413 2410 322473546 322474528 0.000000e+00 970
27 TraesCS1D01G160300 chr1B 84.894 993 104 14 3253 4219 327345109 327346081 0.000000e+00 961
28 TraesCS1D01G160300 chr1B 85.502 876 92 20 3354 4221 322475506 322476354 0.000000e+00 881
29 TraesCS1D01G160300 chr1B 87.430 716 68 10 1785 2498 327340953 327341648 0.000000e+00 804
30 TraesCS1D01G160300 chr1B 89.144 654 48 8 2487 3140 327343065 327343695 0.000000e+00 793
31 TraesCS1D01G160300 chr1B 85.147 781 74 27 371 1125 327226573 327227337 0.000000e+00 761
32 TraesCS1D01G160300 chr1B 88.583 508 49 3 2607 3113 350442785 350442286 3.980000e-170 608
33 TraesCS1D01G160300 chr1B 89.895 475 37 9 1316 1785 327339254 327339722 6.660000e-168 601
34 TraesCS1D01G160300 chr1B 91.603 393 22 6 270 653 327226180 327226570 2.470000e-147 532
35 TraesCS1D01G160300 chr1B 81.062 565 70 16 519 1073 350444616 350444079 2.590000e-112 416
36 TraesCS1D01G160300 chr1B 85.034 147 9 8 390 525 327226428 327226572 2.260000e-28 137
37 TraesCS1D01G160300 chr1A 88.331 2091 161 39 1045 3113 294039095 294041124 0.000000e+00 2433
38 TraesCS1D01G160300 chr1A 85.887 1155 79 28 3139 4260 294041184 294042287 0.000000e+00 1153
39 TraesCS1D01G160300 chr1A 84.930 1002 125 16 1412 2410 290124481 290125459 0.000000e+00 990
40 TraesCS1D01G160300 chr1A 84.994 893 93 25 3354 4238 290126432 290127291 0.000000e+00 869
41 TraesCS1D01G160300 chr1A 87.583 604 57 12 3526 4116 293737612 293738210 0.000000e+00 684
42 TraesCS1D01G160300 chr1A 89.109 505 46 3 2610 3113 338594663 338594167 1.840000e-173 619
43 TraesCS1D01G160300 chr1A 86.165 571 50 16 572 1121 294038573 294039135 1.440000e-164 590
44 TraesCS1D01G160300 chr1A 91.560 391 20 8 270 652 294037950 294038335 1.150000e-145 527
45 TraesCS1D01G160300 chr1A 82.545 550 67 17 519 1051 338596612 338596075 1.530000e-124 457
46 TraesCS1D01G160300 chr1A 87.817 197 18 5 367 562 294038335 294038526 4.690000e-55 226
47 TraesCS1D01G160300 chr1A 86.525 141 8 7 390 520 294038195 294038334 1.350000e-30 145
48 TraesCS1D01G160300 chr1A 82.143 140 15 6 390 520 338596612 338596474 1.370000e-20 111
49 TraesCS1D01G160300 chr3A 84.729 406 45 10 4259 4654 685360566 685360964 1.570000e-104 390
50 TraesCS1D01G160300 chr2B 83.586 396 46 11 4269 4653 26245807 26245420 2.060000e-93 353
51 TraesCS1D01G160300 chr2B 92.093 215 16 1 1 215 223411028 223411241 7.570000e-78 302
52 TraesCS1D01G160300 chr2B 83.600 250 41 0 4404 4653 26243128 26242879 7.790000e-58 235
53 TraesCS1D01G160300 chr5B 84.553 369 38 13 4297 4654 417155917 417155557 9.580000e-92 348
54 TraesCS1D01G160300 chr5B 92.958 213 15 0 4 216 551741217 551741005 1.260000e-80 311
55 TraesCS1D01G160300 chr5B 92.019 213 17 0 5 217 613097955 613097743 2.720000e-77 300
56 TraesCS1D01G160300 chr4D 94.393 214 12 0 2 215 458940803 458940590 3.470000e-86 329
57 TraesCS1D01G160300 chr3B 84.036 332 42 5 4331 4654 520345227 520345555 4.520000e-80 309
58 TraesCS1D01G160300 chr3B 89.381 226 22 1 1 226 683360702 683360925 2.740000e-72 283
59 TraesCS1D01G160300 chr7D 79.913 458 58 17 3356 3809 90410250 90410677 5.850000e-79 305
60 TraesCS1D01G160300 chr3D 92.130 216 15 2 1 215 89548022 89547808 2.100000e-78 303
61 TraesCS1D01G160300 chr6D 91.667 216 16 2 1 215 327608095 327608309 9.790000e-77 298
62 TraesCS1D01G160300 chr6D 73.418 316 66 12 4330 4639 2623097 2622794 8.240000e-18 102
63 TraesCS1D01G160300 chr5A 91.628 215 18 0 1 215 602715207 602714993 9.790000e-77 298
64 TraesCS1D01G160300 chr2D 90.868 219 18 2 1 218 586898503 586898720 4.550000e-75 292
65 TraesCS1D01G160300 chr2D 77.023 383 66 12 4269 4639 23173423 23173051 2.840000e-47 200
66 TraesCS1D01G160300 chr6A 89.450 218 22 1 4437 4654 563500585 563500369 1.650000e-69 274
67 TraesCS1D01G160300 chr4A 88.636 220 24 1 4435 4654 663463281 663463063 2.760000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G160300 chr1D 226941710 226946363 4653 False 8595.000000 8595 100.000000 1 4654 1 chr1D.!!$F3 4653
1 TraesCS1D01G160300 chr1D 227372182 227376541 4359 False 1092.000000 2300 88.464600 270 4260 5 chr1D.!!$F5 3990
2 TraesCS1D01G160300 chr1D 223164293 223165167 874 False 1013.000000 1013 87.612000 3345 4232 1 chr1D.!!$F1 887
3 TraesCS1D01G160300 chr1D 226825346 226828384 3038 False 845.250000 1203 88.205000 1413 4260 4 chr1D.!!$F4 2847
4 TraesCS1D01G160300 chr1D 208412364 208418535 6171 True 838.000000 1587 85.706500 561 4219 4 chr1D.!!$R1 3658
5 TraesCS1D01G160300 chr1D 226469218 226469816 598 False 695.000000 695 87.914000 3526 4116 1 chr1D.!!$F2 590
6 TraesCS1D01G160300 chr1D 261722002 261724361 2359 False 559.000000 669 86.445500 516 3113 2 chr1D.!!$F7 2597
7 TraesCS1D01G160300 chr1D 227646984 227650464 3480 False 541.250000 736 87.275000 1316 4219 4 chr1D.!!$F6 2903
8 TraesCS1D01G160300 chr1B 326911060 326915363 4303 False 3376.500000 3840 95.182000 264 4569 2 chr1B.!!$F2 4305
9 TraesCS1D01G160300 chr1B 327226180 327230515 4335 False 1088.000000 2671 88.044000 270 4260 5 chr1B.!!$F3 3990
10 TraesCS1D01G160300 chr1B 322473546 322476354 2808 False 925.500000 970 85.032000 1413 4221 2 chr1B.!!$F1 2808
11 TraesCS1D01G160300 chr1B 327339254 327346081 6827 False 789.750000 961 87.840750 1316 4219 4 chr1B.!!$F4 2903
12 TraesCS1D01G160300 chr1B 350442286 350444616 2330 True 512.000000 608 84.822500 519 3113 2 chr1B.!!$R1 2594
13 TraesCS1D01G160300 chr1A 290124481 290127291 2810 False 929.500000 990 84.962000 1412 4238 2 chr1A.!!$F2 2826
14 TraesCS1D01G160300 chr1A 294037950 294042287 4337 False 845.666667 2433 87.714167 270 4260 6 chr1A.!!$F3 3990
15 TraesCS1D01G160300 chr1A 293737612 293738210 598 False 684.000000 684 87.583000 3526 4116 1 chr1A.!!$F1 590
16 TraesCS1D01G160300 chr1A 338594167 338596612 2445 True 395.666667 619 84.599000 390 3113 3 chr1A.!!$R1 2723
17 TraesCS1D01G160300 chr2B 26242879 26245807 2928 True 294.000000 353 83.593000 4269 4653 2 chr2B.!!$R1 384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 449 0.106708 TTATCGCATCCTGCTGTCCC 59.893 55.000 0.00 0.0 42.25 4.46 F
455 456 1.004044 CATCCTGCTGTCCCTCACTTT 59.996 52.381 0.00 0.0 0.00 2.66 F
1579 2447 0.608640 CGTGCACTCCTAGGAAAGGT 59.391 55.000 13.77 4.5 46.62 3.50 F
2056 4290 1.915141 CAGGCACCTGGAAGTGAAAT 58.085 50.000 8.93 0.0 40.34 2.17 F
3087 7059 2.453080 CATGCATGCGTTATCCAACAC 58.547 47.619 14.93 0.0 34.05 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 2447 1.482182 CTGAGTCCGGATCAACATGGA 59.518 52.381 7.81 0.0 0.00 3.41 R
2084 4318 2.093500 AGACGAAGAGCAACATATGGCA 60.093 45.455 7.80 0.0 0.00 4.92 R
2852 6808 1.581934 TCTTCTGAACCACAACAGCG 58.418 50.000 0.00 0.0 34.57 5.18 R
3149 7176 2.622942 CCTTGCCTTGCACAAAGAACTA 59.377 45.455 0.00 0.0 38.71 2.24 R
4572 10701 0.253044 GCAGGTGGCTGAGTTATGGA 59.747 55.000 0.00 0.0 40.25 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.139234 GGGGTGCGACGGTAGGTC 62.139 72.222 0.00 0.00 42.48 3.85
18 19 4.139234 GGGTGCGACGGTAGGTCC 62.139 72.222 0.00 0.00 42.99 4.46
19 20 4.139234 GGTGCGACGGTAGGTCCC 62.139 72.222 0.00 0.00 42.99 4.46
20 21 3.066814 GTGCGACGGTAGGTCCCT 61.067 66.667 0.00 0.00 42.99 4.20
21 22 2.283388 TGCGACGGTAGGTCCCTT 60.283 61.111 0.00 0.00 42.99 3.95
22 23 1.909781 TGCGACGGTAGGTCCCTTT 60.910 57.895 0.00 0.00 42.99 3.11
23 24 1.447314 GCGACGGTAGGTCCCTTTG 60.447 63.158 0.00 0.00 42.99 2.77
24 25 1.447314 CGACGGTAGGTCCCTTTGC 60.447 63.158 0.00 0.00 42.99 3.68
25 26 1.078637 GACGGTAGGTCCCTTTGCC 60.079 63.158 0.00 0.00 39.90 4.52
26 27 1.833787 GACGGTAGGTCCCTTTGCCA 61.834 60.000 0.00 0.00 39.90 4.92
27 28 1.376812 CGGTAGGTCCCTTTGCCAC 60.377 63.158 0.00 0.00 0.00 5.01
28 29 1.376812 GGTAGGTCCCTTTGCCACG 60.377 63.158 0.00 0.00 0.00 4.94
29 30 1.373812 GTAGGTCCCTTTGCCACGT 59.626 57.895 0.00 0.00 0.00 4.49
30 31 0.672711 GTAGGTCCCTTTGCCACGTC 60.673 60.000 0.00 0.00 0.00 4.34
31 32 1.122632 TAGGTCCCTTTGCCACGTCA 61.123 55.000 0.00 0.00 0.00 4.35
32 33 1.966451 GGTCCCTTTGCCACGTCAG 60.966 63.158 0.00 0.00 0.00 3.51
33 34 1.070786 GTCCCTTTGCCACGTCAGA 59.929 57.895 0.00 0.00 0.00 3.27
34 35 1.070786 TCCCTTTGCCACGTCAGAC 59.929 57.895 0.00 0.00 0.00 3.51
35 36 1.966451 CCCTTTGCCACGTCAGACC 60.966 63.158 0.00 0.00 0.00 3.85
36 37 1.966451 CCTTTGCCACGTCAGACCC 60.966 63.158 0.00 0.00 0.00 4.46
37 38 1.966451 CTTTGCCACGTCAGACCCC 60.966 63.158 0.00 0.00 0.00 4.95
38 39 3.818121 TTTGCCACGTCAGACCCCG 62.818 63.158 0.00 0.00 0.00 5.73
40 41 4.309950 GCCACGTCAGACCCCGTT 62.310 66.667 0.00 0.00 34.59 4.44
41 42 2.934570 GCCACGTCAGACCCCGTTA 61.935 63.158 0.00 0.00 34.59 3.18
42 43 1.667151 CCACGTCAGACCCCGTTAA 59.333 57.895 0.00 0.00 34.59 2.01
43 44 0.668401 CCACGTCAGACCCCGTTAAC 60.668 60.000 0.00 0.00 34.59 2.01
44 45 1.005294 CACGTCAGACCCCGTTAACG 61.005 60.000 20.99 20.99 34.59 3.18
63 64 2.202987 CCAGACGGCCATCAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
64 65 2.580815 CAGACGGCCATCAGAGCA 59.419 61.111 0.00 0.00 0.00 4.26
65 66 1.812922 CAGACGGCCATCAGAGCAC 60.813 63.158 0.00 0.00 0.00 4.40
66 67 2.512515 GACGGCCATCAGAGCACC 60.513 66.667 2.24 0.00 0.00 5.01
67 68 4.101448 ACGGCCATCAGAGCACCC 62.101 66.667 2.24 0.00 0.00 4.61
68 69 3.790437 CGGCCATCAGAGCACCCT 61.790 66.667 2.24 0.00 0.00 4.34
69 70 2.434843 CGGCCATCAGAGCACCCTA 61.435 63.158 2.24 0.00 0.00 3.53
70 71 1.147153 GGCCATCAGAGCACCCTAC 59.853 63.158 0.00 0.00 0.00 3.18
71 72 1.147153 GCCATCAGAGCACCCTACC 59.853 63.158 0.00 0.00 0.00 3.18
72 73 1.443407 CCATCAGAGCACCCTACCG 59.557 63.158 0.00 0.00 0.00 4.02
73 74 1.227380 CATCAGAGCACCCTACCGC 60.227 63.158 0.00 0.00 0.00 5.68
74 75 2.435693 ATCAGAGCACCCTACCGCC 61.436 63.158 0.00 0.00 0.00 6.13
75 76 3.390521 CAGAGCACCCTACCGCCA 61.391 66.667 0.00 0.00 0.00 5.69
76 77 3.077556 AGAGCACCCTACCGCCAG 61.078 66.667 0.00 0.00 0.00 4.85
77 78 4.162690 GAGCACCCTACCGCCAGG 62.163 72.222 0.00 0.00 45.13 4.45
91 92 4.143333 CAGGGTGGACGGCGGTAG 62.143 72.222 13.24 0.00 0.00 3.18
106 107 4.094090 GCGGTAGCCTGTACATATCTAC 57.906 50.000 15.39 15.39 37.42 2.59
107 108 3.119566 GCGGTAGCCTGTACATATCTACC 60.120 52.174 24.26 24.26 43.46 3.18
108 109 4.698583 GGTAGCCTGTACATATCTACCG 57.301 50.000 21.95 1.40 39.64 4.02
109 110 4.077822 GGTAGCCTGTACATATCTACCGT 58.922 47.826 21.95 0.00 39.64 4.83
110 111 4.155644 GGTAGCCTGTACATATCTACCGTC 59.844 50.000 21.95 8.94 39.64 4.79
111 112 3.828921 AGCCTGTACATATCTACCGTCA 58.171 45.455 0.00 0.00 0.00 4.35
112 113 3.821600 AGCCTGTACATATCTACCGTCAG 59.178 47.826 0.00 0.00 0.00 3.51
113 114 3.057456 GCCTGTACATATCTACCGTCAGG 60.057 52.174 0.00 0.00 42.54 3.86
114 115 3.506455 CCTGTACATATCTACCGTCAGGG 59.494 52.174 0.00 0.00 43.47 4.45
115 116 4.395625 CTGTACATATCTACCGTCAGGGA 58.604 47.826 0.00 0.00 43.47 4.20
126 127 4.051167 TCAGGGAGGACGGCGGTA 62.051 66.667 13.24 0.00 0.00 4.02
127 128 3.528370 CAGGGAGGACGGCGGTAG 61.528 72.222 13.24 0.00 0.00 3.18
130 131 2.517875 GGAGGACGGCGGTAGCTA 60.518 66.667 13.24 0.00 44.37 3.32
131 132 2.123428 GGAGGACGGCGGTAGCTAA 61.123 63.158 13.24 0.00 44.37 3.09
132 133 1.669999 GGAGGACGGCGGTAGCTAAA 61.670 60.000 13.24 0.00 44.37 1.85
133 134 0.174162 GAGGACGGCGGTAGCTAAAA 59.826 55.000 13.24 0.00 44.37 1.52
134 135 0.175073 AGGACGGCGGTAGCTAAAAG 59.825 55.000 13.24 0.00 44.37 2.27
135 136 0.808847 GGACGGCGGTAGCTAAAAGG 60.809 60.000 13.24 0.00 44.37 3.11
136 137 0.808847 GACGGCGGTAGCTAAAAGGG 60.809 60.000 13.24 0.00 44.37 3.95
137 138 1.219935 CGGCGGTAGCTAAAAGGGT 59.780 57.895 0.00 0.00 44.37 4.34
138 139 0.808847 CGGCGGTAGCTAAAAGGGTC 60.809 60.000 0.00 0.00 44.37 4.46
139 140 0.251073 GGCGGTAGCTAAAAGGGTCA 59.749 55.000 0.00 0.00 44.37 4.02
140 141 1.339342 GGCGGTAGCTAAAAGGGTCAA 60.339 52.381 0.00 0.00 44.37 3.18
141 142 2.429478 GCGGTAGCTAAAAGGGTCAAA 58.571 47.619 0.00 0.00 41.01 2.69
142 143 3.014623 GCGGTAGCTAAAAGGGTCAAAT 58.985 45.455 0.00 0.00 41.01 2.32
143 144 3.181500 GCGGTAGCTAAAAGGGTCAAATG 60.181 47.826 0.00 0.00 41.01 2.32
144 145 4.007659 CGGTAGCTAAAAGGGTCAAATGT 58.992 43.478 0.00 0.00 0.00 2.71
145 146 4.094442 CGGTAGCTAAAAGGGTCAAATGTC 59.906 45.833 0.00 0.00 0.00 3.06
146 147 4.094442 GGTAGCTAAAAGGGTCAAATGTCG 59.906 45.833 0.00 0.00 0.00 4.35
147 148 4.015872 AGCTAAAAGGGTCAAATGTCGA 57.984 40.909 0.00 0.00 0.00 4.20
148 149 4.394729 AGCTAAAAGGGTCAAATGTCGAA 58.605 39.130 0.00 0.00 0.00 3.71
149 150 4.825085 AGCTAAAAGGGTCAAATGTCGAAA 59.175 37.500 0.00 0.00 0.00 3.46
150 151 5.476945 AGCTAAAAGGGTCAAATGTCGAAAT 59.523 36.000 0.00 0.00 0.00 2.17
151 152 6.657541 AGCTAAAAGGGTCAAATGTCGAAATA 59.342 34.615 0.00 0.00 0.00 1.40
152 153 7.175990 AGCTAAAAGGGTCAAATGTCGAAATAA 59.824 33.333 0.00 0.00 0.00 1.40
153 154 7.973944 GCTAAAAGGGTCAAATGTCGAAATAAT 59.026 33.333 0.00 0.00 0.00 1.28
154 155 9.855021 CTAAAAGGGTCAAATGTCGAAATAATT 57.145 29.630 0.00 0.00 0.00 1.40
156 157 8.757164 AAAGGGTCAAATGTCGAAATAATTTC 57.243 30.769 0.00 0.00 36.32 2.17
157 158 7.461182 AGGGTCAAATGTCGAAATAATTTCA 57.539 32.000 0.00 0.00 39.63 2.69
158 159 7.891561 AGGGTCAAATGTCGAAATAATTTCAA 58.108 30.769 0.00 0.00 39.63 2.69
159 160 8.364142 AGGGTCAAATGTCGAAATAATTTCAAA 58.636 29.630 0.00 0.00 39.63 2.69
160 161 8.432359 GGGTCAAATGTCGAAATAATTTCAAAC 58.568 33.333 0.00 0.00 39.63 2.93
161 162 8.432359 GGTCAAATGTCGAAATAATTTCAAACC 58.568 33.333 0.00 0.00 39.63 3.27
162 163 8.153411 GTCAAATGTCGAAATAATTTCAAACCG 58.847 33.333 0.00 0.00 39.63 4.44
163 164 7.327275 TCAAATGTCGAAATAATTTCAAACCGG 59.673 33.333 0.00 0.00 39.63 5.28
164 165 5.049398 TGTCGAAATAATTTCAAACCGGG 57.951 39.130 6.32 0.00 39.63 5.73
165 166 4.082679 TGTCGAAATAATTTCAAACCGGGG 60.083 41.667 6.32 0.00 39.63 5.73
166 167 4.080687 TCGAAATAATTTCAAACCGGGGT 58.919 39.130 6.32 0.00 39.63 4.95
167 168 4.156373 TCGAAATAATTTCAAACCGGGGTC 59.844 41.667 6.32 0.00 39.63 4.46
168 169 4.082679 CGAAATAATTTCAAACCGGGGTCA 60.083 41.667 6.32 0.00 39.63 4.02
169 170 5.400066 AAATAATTTCAAACCGGGGTCAG 57.600 39.130 6.32 0.00 0.00 3.51
170 171 2.668144 AATTTCAAACCGGGGTCAGA 57.332 45.000 6.32 0.00 0.00 3.27
171 172 2.899303 ATTTCAAACCGGGGTCAGAT 57.101 45.000 6.32 0.00 0.00 2.90
172 173 2.194201 TTTCAAACCGGGGTCAGATC 57.806 50.000 6.32 0.00 0.00 2.75
173 174 0.326927 TTCAAACCGGGGTCAGATCC 59.673 55.000 6.32 0.00 0.00 3.36
174 175 0.546747 TCAAACCGGGGTCAGATCCT 60.547 55.000 6.32 0.00 0.00 3.24
175 176 0.392998 CAAACCGGGGTCAGATCCTG 60.393 60.000 6.32 0.68 0.00 3.86
176 177 0.546747 AAACCGGGGTCAGATCCTGA 60.547 55.000 10.57 0.00 38.25 3.86
177 178 0.326618 AACCGGGGTCAGATCCTGAT 60.327 55.000 10.57 0.00 42.73 2.90
178 179 0.326618 ACCGGGGTCAGATCCTGATT 60.327 55.000 10.57 0.00 42.73 2.57
179 180 0.839946 CCGGGGTCAGATCCTGATTT 59.160 55.000 10.57 0.00 42.73 2.17
180 181 1.212935 CCGGGGTCAGATCCTGATTTT 59.787 52.381 10.57 0.00 42.73 1.82
181 182 2.438021 CCGGGGTCAGATCCTGATTTTA 59.562 50.000 10.57 0.00 42.73 1.52
182 183 3.495100 CCGGGGTCAGATCCTGATTTTAG 60.495 52.174 10.57 0.00 42.73 1.85
183 184 3.388024 CGGGGTCAGATCCTGATTTTAGA 59.612 47.826 1.58 0.00 42.73 2.10
184 185 4.709250 GGGGTCAGATCCTGATTTTAGAC 58.291 47.826 0.00 0.00 42.73 2.59
185 186 4.372656 GGGTCAGATCCTGATTTTAGACG 58.627 47.826 0.00 0.00 42.73 4.18
186 187 4.141914 GGGTCAGATCCTGATTTTAGACGT 60.142 45.833 0.00 0.00 42.73 4.34
187 188 4.806247 GGTCAGATCCTGATTTTAGACGTG 59.194 45.833 0.00 0.00 42.73 4.49
188 189 5.394224 GGTCAGATCCTGATTTTAGACGTGA 60.394 44.000 0.00 0.00 42.73 4.35
189 190 6.100004 GTCAGATCCTGATTTTAGACGTGAA 58.900 40.000 0.00 0.00 42.73 3.18
190 191 6.590292 GTCAGATCCTGATTTTAGACGTGAAA 59.410 38.462 0.00 0.00 42.73 2.69
191 192 7.117812 GTCAGATCCTGATTTTAGACGTGAAAA 59.882 37.037 0.00 0.00 42.73 2.29
192 193 7.331934 TCAGATCCTGATTTTAGACGTGAAAAG 59.668 37.037 0.00 0.00 35.39 2.27
193 194 6.595716 AGATCCTGATTTTAGACGTGAAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
194 195 5.001232 TCCTGATTTTAGACGTGAAAAGGG 58.999 41.667 0.00 4.42 0.00 3.95
195 196 4.760204 CCTGATTTTAGACGTGAAAAGGGT 59.240 41.667 0.00 0.00 0.00 4.34
196 197 5.106673 CCTGATTTTAGACGTGAAAAGGGTC 60.107 44.000 0.00 0.00 0.00 4.46
197 198 5.369833 TGATTTTAGACGTGAAAAGGGTCA 58.630 37.500 0.00 0.00 33.18 4.02
198 199 5.823570 TGATTTTAGACGTGAAAAGGGTCAA 59.176 36.000 0.00 0.00 33.18 3.18
199 200 6.319152 TGATTTTAGACGTGAAAAGGGTCAAA 59.681 34.615 0.00 0.00 33.18 2.69
200 201 6.512342 TTTTAGACGTGAAAAGGGTCAAAA 57.488 33.333 0.00 0.00 33.18 2.44
201 202 5.488645 TTAGACGTGAAAAGGGTCAAAAC 57.511 39.130 0.00 0.00 33.18 2.43
202 203 3.349022 AGACGTGAAAAGGGTCAAAACA 58.651 40.909 0.00 0.00 33.18 2.83
203 204 3.128068 AGACGTGAAAAGGGTCAAAACAC 59.872 43.478 0.00 0.00 33.18 3.32
204 205 2.446282 CGTGAAAAGGGTCAAAACACG 58.554 47.619 0.00 0.00 42.04 4.49
205 206 3.768468 GTGAAAAGGGTCAAAACACGA 57.232 42.857 0.00 0.00 32.44 4.35
206 207 4.099380 GTGAAAAGGGTCAAAACACGAA 57.901 40.909 0.00 0.00 32.44 3.85
207 208 4.487019 GTGAAAAGGGTCAAAACACGAAA 58.513 39.130 0.00 0.00 32.44 3.46
208 209 5.106442 GTGAAAAGGGTCAAAACACGAAAT 58.894 37.500 0.00 0.00 32.44 2.17
209 210 5.579119 GTGAAAAGGGTCAAAACACGAAATT 59.421 36.000 0.00 0.00 32.44 1.82
210 211 6.091577 GTGAAAAGGGTCAAAACACGAAATTT 59.908 34.615 0.00 0.00 32.44 1.82
211 212 6.651225 TGAAAAGGGTCAAAACACGAAATTTT 59.349 30.769 0.00 0.00 32.44 1.82
212 213 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
213 214 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
214 215 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
215 216 3.619038 GGTCAAAACACGAAATTTTGCCA 59.381 39.130 19.02 6.53 43.62 4.92
216 217 4.493382 GGTCAAAACACGAAATTTTGCCAC 60.493 41.667 19.02 13.39 43.62 5.01
217 218 4.092091 GTCAAAACACGAAATTTTGCCACA 59.908 37.500 5.27 1.15 43.62 4.17
218 219 4.690748 TCAAAACACGAAATTTTGCCACAA 59.309 33.333 5.27 0.00 43.62 3.33
219 220 4.856115 AAACACGAAATTTTGCCACAAG 57.144 36.364 5.27 0.00 0.00 3.16
220 221 3.791973 ACACGAAATTTTGCCACAAGA 57.208 38.095 5.27 0.00 0.00 3.02
221 222 3.705604 ACACGAAATTTTGCCACAAGAG 58.294 40.909 5.27 0.00 0.00 2.85
222 223 3.052036 CACGAAATTTTGCCACAAGAGG 58.948 45.455 5.27 0.00 0.00 3.69
223 224 2.955660 ACGAAATTTTGCCACAAGAGGA 59.044 40.909 5.27 0.00 0.00 3.71
224 225 3.004734 ACGAAATTTTGCCACAAGAGGAG 59.995 43.478 5.27 0.00 0.00 3.69
225 226 3.253188 CGAAATTTTGCCACAAGAGGAGA 59.747 43.478 0.00 0.00 0.00 3.71
226 227 4.614535 CGAAATTTTGCCACAAGAGGAGAG 60.615 45.833 0.00 0.00 0.00 3.20
227 228 2.276732 TTTTGCCACAAGAGGAGAGG 57.723 50.000 0.00 0.00 0.00 3.69
228 229 1.434188 TTTGCCACAAGAGGAGAGGA 58.566 50.000 0.00 0.00 0.00 3.71
229 230 1.434188 TTGCCACAAGAGGAGAGGAA 58.566 50.000 0.00 0.00 0.00 3.36
230 231 1.434188 TGCCACAAGAGGAGAGGAAA 58.566 50.000 0.00 0.00 0.00 3.13
231 232 1.349026 TGCCACAAGAGGAGAGGAAAG 59.651 52.381 0.00 0.00 0.00 2.62
232 233 1.349357 GCCACAAGAGGAGAGGAAAGT 59.651 52.381 0.00 0.00 0.00 2.66
233 234 2.873649 GCCACAAGAGGAGAGGAAAGTG 60.874 54.545 0.00 0.00 0.00 3.16
234 235 2.289945 CCACAAGAGGAGAGGAAAGTGG 60.290 54.545 0.00 0.00 39.25 4.00
235 236 1.981495 ACAAGAGGAGAGGAAAGTGGG 59.019 52.381 0.00 0.00 0.00 4.61
236 237 1.280421 CAAGAGGAGAGGAAAGTGGGG 59.720 57.143 0.00 0.00 0.00 4.96
237 238 0.252927 AGAGGAGAGGAAAGTGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
252 253 4.416738 GGGGCAAGCGCTCTTCCT 62.417 66.667 12.06 0.00 39.29 3.36
253 254 2.821810 GGGCAAGCGCTCTTCCTC 60.822 66.667 12.06 3.07 34.90 3.71
254 255 2.267324 GGCAAGCGCTCTTCCTCT 59.733 61.111 12.06 0.00 38.60 3.69
255 256 1.376553 GGCAAGCGCTCTTCCTCTT 60.377 57.895 12.06 0.00 38.60 2.85
256 257 0.957888 GGCAAGCGCTCTTCCTCTTT 60.958 55.000 12.06 0.00 38.60 2.52
257 258 0.167689 GCAAGCGCTCTTCCTCTTTG 59.832 55.000 12.06 2.34 34.30 2.77
258 259 1.517242 CAAGCGCTCTTCCTCTTTGT 58.483 50.000 12.06 0.00 0.00 2.83
259 260 1.196354 CAAGCGCTCTTCCTCTTTGTG 59.804 52.381 12.06 0.00 0.00 3.33
260 261 0.681733 AGCGCTCTTCCTCTTTGTGA 59.318 50.000 2.64 0.00 0.00 3.58
261 262 0.793250 GCGCTCTTCCTCTTTGTGAC 59.207 55.000 0.00 0.00 0.00 3.67
262 263 1.606737 GCGCTCTTCCTCTTTGTGACT 60.607 52.381 0.00 0.00 0.00 3.41
369 370 4.833989 GGTCCGCCCCCAAATCCC 62.834 72.222 0.00 0.00 0.00 3.85
448 449 0.106708 TTATCGCATCCTGCTGTCCC 59.893 55.000 0.00 0.00 42.25 4.46
455 456 1.004044 CATCCTGCTGTCCCTCACTTT 59.996 52.381 0.00 0.00 0.00 2.66
471 472 4.708177 TCACTTTCTTCTTCTGGAGTTGG 58.292 43.478 0.00 0.00 0.00 3.77
547 548 3.202706 GCCGCAAATCCCGTCTCC 61.203 66.667 0.00 0.00 0.00 3.71
581 587 2.673368 GCATCCTACCGTTCTTCACTTG 59.327 50.000 0.00 0.00 0.00 3.16
620 630 6.192044 AGGGTTTTTCAGACTTCCAGTTTTA 58.808 36.000 0.00 0.00 0.00 1.52
648 661 1.974957 TCACGAAACAGGGATTCAGGA 59.025 47.619 0.00 0.00 0.00 3.86
693 1032 1.202533 TCTTTCCCAATCGATCGAGGC 60.203 52.381 23.84 0.00 0.00 4.70
908 1276 5.677344 GCCTACCGTGGTTCTTTAGTACTAC 60.677 48.000 0.91 0.00 0.00 2.73
1016 1730 2.877097 TCTATGGGCAACTGCAAGAA 57.123 45.000 3.76 0.00 44.36 2.52
1181 1955 4.402793 GGCGGAATATGAATCCTAGCTCTA 59.597 45.833 0.00 0.00 34.66 2.43
1212 2028 3.112263 TGGCTAGCTAGTATGTTGGGTT 58.888 45.455 21.62 0.00 0.00 4.11
1213 2029 3.118408 TGGCTAGCTAGTATGTTGGGTTG 60.118 47.826 21.62 0.00 0.00 3.77
1229 2046 3.515502 TGGGTTGTCACTCTCCTTATCTG 59.484 47.826 0.00 0.00 0.00 2.90
1242 2059 4.817517 TCCTTATCTGGAAACACGAAGTC 58.182 43.478 0.00 0.00 32.60 3.01
1268 2085 3.181451 TGAGTGCTGGTCTTGATGTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
1391 2248 7.894376 ATGCGTTCAAGATTTTGATTCATTT 57.106 28.000 0.00 0.00 42.60 2.32
1392 2249 8.984891 ATGCGTTCAAGATTTTGATTCATTTA 57.015 26.923 0.00 0.00 42.60 1.40
1393 2250 8.984891 TGCGTTCAAGATTTTGATTCATTTAT 57.015 26.923 0.00 0.00 42.60 1.40
1394 2251 9.075519 TGCGTTCAAGATTTTGATTCATTTATC 57.924 29.630 0.00 0.00 42.60 1.75
1395 2252 9.294030 GCGTTCAAGATTTTGATTCATTTATCT 57.706 29.630 0.00 0.00 42.60 1.98
1511 2372 7.281774 TGAATTTTCTCATAGCATGTTCTCTCC 59.718 37.037 0.00 0.00 0.00 3.71
1579 2447 0.608640 CGTGCACTCCTAGGAAAGGT 59.391 55.000 13.77 4.50 46.62 3.50
1674 2542 4.450419 GGATTAATGACTTCTCATCGCTGG 59.550 45.833 0.00 0.00 35.96 4.85
1778 2667 8.752766 AGAAACTCTGCAAAATTCATGTATTG 57.247 30.769 0.00 0.00 0.00 1.90
2056 4290 1.915141 CAGGCACCTGGAAGTGAAAT 58.085 50.000 8.93 0.00 40.34 2.17
2245 4480 3.624326 TTTTTCAAGCACGTCCATCAG 57.376 42.857 0.00 0.00 0.00 2.90
2294 4532 7.819415 CCTCTGTGTGTCATAAGTTTGAGATAA 59.181 37.037 0.00 0.00 0.00 1.75
2385 4727 6.164408 TGTCATTAACAAGTCGCATTGTAG 57.836 37.500 5.64 0.00 42.49 2.74
2437 4782 5.015178 ACCTTCAGGAATTTGGATGGTTCTA 59.985 40.000 0.00 0.00 36.11 2.10
2461 4806 4.948847 TGGCATACACATGTATCTCACTC 58.051 43.478 0.00 0.00 39.06 3.51
2671 6619 4.749976 AGTTCTTCGCTGTCTAATCTTCC 58.250 43.478 0.00 0.00 0.00 3.46
2679 6627 4.328440 CGCTGTCTAATCTTCCAAGTTCTG 59.672 45.833 0.00 0.00 0.00 3.02
2852 6808 6.226787 TGATGTCTCTTCTCCTGAAAAGAAC 58.773 40.000 0.00 0.00 31.83 3.01
3087 7059 2.453080 CATGCATGCGTTATCCAACAC 58.547 47.619 14.93 0.00 34.05 3.32
3115 7090 7.469537 AGCTTATACGTATCCTTTAGCTCAT 57.530 36.000 12.24 0.00 32.67 2.90
3116 7091 7.316640 AGCTTATACGTATCCTTTAGCTCATG 58.683 38.462 12.24 0.00 32.67 3.07
3136 7163 6.258354 TCATGGTACCTACTCACTTTAGGAA 58.742 40.000 14.36 0.00 38.84 3.36
3137 7164 5.990120 TGGTACCTACTCACTTTAGGAAC 57.010 43.478 14.36 0.00 38.84 3.62
3149 7176 5.248477 TCACTTTAGGAACTTAGTGATGGCT 59.752 40.000 0.00 0.00 46.44 4.75
3215 7242 7.094549 TGGACAGTTTAGCATTATACAACCAAC 60.095 37.037 0.00 0.00 0.00 3.77
3668 9751 1.512926 GGTGACAAGTACAGCACTGG 58.487 55.000 2.21 0.00 37.63 4.00
3980 10081 2.777692 ACTCAAGAAACTCAAGGACCCA 59.222 45.455 0.00 0.00 0.00 4.51
4223 10338 8.284693 TGAGATGATTTCACGCATATATTTGTG 58.715 33.333 5.31 5.31 0.00 3.33
4249 10368 7.594386 GGATATATGTATCGAGCAGATGTCATG 59.406 40.741 18.37 0.00 40.40 3.07
4287 10407 4.552166 TCTTTTCGAAACAGAGGCAAAG 57.448 40.909 10.79 2.06 0.00 2.77
4310 10430 1.477553 TTGCCTTGCCTCATCCATTC 58.522 50.000 0.00 0.00 0.00 2.67
4317 10437 4.280174 CCTTGCCTCATCCATTCATTAAGG 59.720 45.833 0.00 0.00 0.00 2.69
4326 10446 7.504403 TCATCCATTCATTAAGGAGAAGAGAC 58.496 38.462 0.00 0.00 34.40 3.36
4350 10475 8.640063 ACTAGTTAATTATTGAAAAACCGGGT 57.360 30.769 6.32 0.00 0.00 5.28
4407 10536 0.179084 ACCACACACACTCTCCAACG 60.179 55.000 0.00 0.00 0.00 4.10
4428 10557 0.820891 GGGCATCATCAAGACCGCAT 60.821 55.000 0.00 0.00 31.28 4.73
4441 10570 0.248498 ACCGCATGTAGACGTCATCG 60.248 55.000 19.50 10.62 43.34 3.84
4488 10617 3.008157 TCATCGCCAACCCTAAAACACTA 59.992 43.478 0.00 0.00 0.00 2.74
4537 10666 0.918983 ATCATCGACCCAACCCACAT 59.081 50.000 0.00 0.00 0.00 3.21
4556 10685 2.254152 TGGAAGAGGCTATGTGGAGT 57.746 50.000 0.00 0.00 0.00 3.85
4572 10701 0.682209 GAGTCACATGCAGGCCCATT 60.682 55.000 0.00 0.00 0.00 3.16
4576 10705 1.046472 CACATGCAGGCCCATTCCAT 61.046 55.000 0.00 0.00 0.00 3.41
4579 10708 1.342174 CATGCAGGCCCATTCCATAAC 59.658 52.381 0.00 0.00 0.00 1.89
4588 10717 2.301346 CCATTCCATAACTCAGCCACC 58.699 52.381 0.00 0.00 0.00 4.61
4601 10730 3.052082 CCACCTGCGGCAAGACAG 61.052 66.667 5.44 0.00 0.00 3.51
4634 10763 2.082231 TCTGACGGAGAACTACGAAGG 58.918 52.381 13.52 2.89 39.85 3.46
4639 10768 2.748532 ACGGAGAACTACGAAGGAGAAG 59.251 50.000 13.52 0.00 39.85 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.139234 GACCTACCGTCGCACCCC 62.139 72.222 0.00 0.00 0.00 4.95
1 2 4.139234 GGACCTACCGTCGCACCC 62.139 72.222 0.00 0.00 42.99 4.61
6 7 1.447314 GCAAAGGGACCTACCGTCG 60.447 63.158 0.00 0.00 42.99 5.12
7 8 1.078637 GGCAAAGGGACCTACCGTC 60.079 63.158 0.00 0.00 41.15 4.79
8 9 1.844289 TGGCAAAGGGACCTACCGT 60.844 57.895 0.00 0.00 40.11 4.83
9 10 1.376812 GTGGCAAAGGGACCTACCG 60.377 63.158 0.00 0.00 40.11 4.02
10 11 1.376812 CGTGGCAAAGGGACCTACC 60.377 63.158 0.00 0.00 38.08 3.18
11 12 0.672711 GACGTGGCAAAGGGACCTAC 60.673 60.000 0.00 0.00 0.00 3.18
12 13 1.122632 TGACGTGGCAAAGGGACCTA 61.123 55.000 0.00 0.00 0.00 3.08
13 14 2.397413 CTGACGTGGCAAAGGGACCT 62.397 60.000 0.00 0.00 0.00 3.85
14 15 1.966451 CTGACGTGGCAAAGGGACC 60.966 63.158 0.00 0.00 0.00 4.46
15 16 1.070786 TCTGACGTGGCAAAGGGAC 59.929 57.895 0.00 0.00 0.00 4.46
16 17 1.070786 GTCTGACGTGGCAAAGGGA 59.929 57.895 0.00 0.00 0.00 4.20
17 18 1.966451 GGTCTGACGTGGCAAAGGG 60.966 63.158 0.00 0.00 0.00 3.95
18 19 1.966451 GGGTCTGACGTGGCAAAGG 60.966 63.158 0.00 0.00 0.00 3.11
19 20 1.966451 GGGGTCTGACGTGGCAAAG 60.966 63.158 0.00 0.00 0.00 2.77
20 21 2.112297 GGGGTCTGACGTGGCAAA 59.888 61.111 0.00 0.00 0.00 3.68
21 22 4.308458 CGGGGTCTGACGTGGCAA 62.308 66.667 0.00 0.00 0.00 4.52
23 24 2.438951 TTAACGGGGTCTGACGTGGC 62.439 60.000 0.00 0.00 43.31 5.01
24 25 0.668401 GTTAACGGGGTCTGACGTGG 60.668 60.000 0.00 0.00 43.31 4.94
25 26 1.005294 CGTTAACGGGGTCTGACGTG 61.005 60.000 20.24 0.00 43.31 4.49
26 27 1.286880 CGTTAACGGGGTCTGACGT 59.713 57.895 20.24 0.00 46.48 4.34
27 28 4.157817 CGTTAACGGGGTCTGACG 57.842 61.111 20.24 0.00 35.37 4.35
46 47 2.202987 GCTCTGATGGCCGTCTGG 60.203 66.667 26.34 19.07 38.77 3.86
47 48 1.812922 GTGCTCTGATGGCCGTCTG 60.813 63.158 25.20 23.76 0.00 3.51
48 49 2.581354 GTGCTCTGATGGCCGTCT 59.419 61.111 25.20 0.00 0.00 4.18
49 50 2.512515 GGTGCTCTGATGGCCGTC 60.513 66.667 18.69 18.69 0.00 4.79
50 51 4.101448 GGGTGCTCTGATGGCCGT 62.101 66.667 0.00 0.00 0.00 5.68
51 52 2.434843 TAGGGTGCTCTGATGGCCG 61.435 63.158 0.00 0.00 0.00 6.13
52 53 1.147153 GTAGGGTGCTCTGATGGCC 59.853 63.158 0.00 0.00 0.00 5.36
53 54 1.147153 GGTAGGGTGCTCTGATGGC 59.853 63.158 0.00 0.00 0.00 4.40
54 55 1.443407 CGGTAGGGTGCTCTGATGG 59.557 63.158 0.00 0.00 0.00 3.51
55 56 1.227380 GCGGTAGGGTGCTCTGATG 60.227 63.158 0.00 0.00 0.00 3.07
56 57 2.435693 GGCGGTAGGGTGCTCTGAT 61.436 63.158 0.00 0.00 0.00 2.90
57 58 3.075005 GGCGGTAGGGTGCTCTGA 61.075 66.667 0.00 0.00 0.00 3.27
58 59 3.376935 CTGGCGGTAGGGTGCTCTG 62.377 68.421 0.00 0.00 0.00 3.35
59 60 3.077556 CTGGCGGTAGGGTGCTCT 61.078 66.667 0.00 0.00 0.00 4.09
60 61 4.162690 CCTGGCGGTAGGGTGCTC 62.163 72.222 0.00 0.00 34.06 4.26
66 67 3.782443 GTCCACCCTGGCGGTAGG 61.782 72.222 0.00 0.00 46.14 3.18
67 68 4.143333 CGTCCACCCTGGCGGTAG 62.143 72.222 0.00 0.00 46.14 3.18
74 75 4.143333 CTACCGCCGTCCACCCTG 62.143 72.222 0.00 0.00 0.00 4.45
85 86 3.119566 GGTAGATATGTACAGGCTACCGC 60.120 52.174 24.11 11.44 40.97 5.68
86 87 4.698583 GGTAGATATGTACAGGCTACCG 57.301 50.000 24.11 0.00 40.97 4.02
87 88 4.077822 ACGGTAGATATGTACAGGCTACC 58.922 47.826 26.33 26.33 44.74 3.18
88 89 4.758674 TGACGGTAGATATGTACAGGCTAC 59.241 45.833 15.35 17.57 28.32 3.58
89 90 4.976864 TGACGGTAGATATGTACAGGCTA 58.023 43.478 15.35 0.00 28.32 3.93
90 91 3.821600 CTGACGGTAGATATGTACAGGCT 59.178 47.826 15.35 0.95 28.32 4.58
91 92 3.057456 CCTGACGGTAGATATGTACAGGC 60.057 52.174 13.35 11.20 37.45 4.85
92 93 3.506455 CCCTGACGGTAGATATGTACAGG 59.494 52.174 13.35 10.07 41.95 4.00
93 94 4.395625 TCCCTGACGGTAGATATGTACAG 58.604 47.826 11.75 10.00 0.00 2.74
94 95 4.395625 CTCCCTGACGGTAGATATGTACA 58.604 47.826 11.75 0.00 0.00 2.90
95 96 3.757493 CCTCCCTGACGGTAGATATGTAC 59.243 52.174 1.36 1.36 0.00 2.90
96 97 3.654321 TCCTCCCTGACGGTAGATATGTA 59.346 47.826 0.00 0.00 0.00 2.29
97 98 2.445905 TCCTCCCTGACGGTAGATATGT 59.554 50.000 0.00 0.00 0.00 2.29
98 99 2.820787 GTCCTCCCTGACGGTAGATATG 59.179 54.545 0.00 0.00 0.00 1.78
99 100 3.157750 GTCCTCCCTGACGGTAGATAT 57.842 52.381 0.00 0.00 0.00 1.63
100 101 2.653234 GTCCTCCCTGACGGTAGATA 57.347 55.000 0.00 0.00 0.00 1.98
101 102 3.516911 GTCCTCCCTGACGGTAGAT 57.483 57.895 0.00 0.00 0.00 1.98
109 110 4.051167 TACCGCCGTCCTCCCTGA 62.051 66.667 0.00 0.00 0.00 3.86
110 111 3.528370 CTACCGCCGTCCTCCCTG 61.528 72.222 0.00 0.00 0.00 4.45
113 114 1.669999 TTTAGCTACCGCCGTCCTCC 61.670 60.000 0.00 0.00 36.60 4.30
114 115 0.174162 TTTTAGCTACCGCCGTCCTC 59.826 55.000 0.00 0.00 36.60 3.71
115 116 0.175073 CTTTTAGCTACCGCCGTCCT 59.825 55.000 0.00 0.00 36.60 3.85
116 117 0.808847 CCTTTTAGCTACCGCCGTCC 60.809 60.000 0.00 0.00 36.60 4.79
117 118 0.808847 CCCTTTTAGCTACCGCCGTC 60.809 60.000 0.00 0.00 36.60 4.79
118 119 1.219935 CCCTTTTAGCTACCGCCGT 59.780 57.895 0.00 0.00 36.60 5.68
119 120 0.808847 GACCCTTTTAGCTACCGCCG 60.809 60.000 0.00 0.00 36.60 6.46
120 121 0.251073 TGACCCTTTTAGCTACCGCC 59.749 55.000 0.00 0.00 36.60 6.13
121 122 2.103537 TTGACCCTTTTAGCTACCGC 57.896 50.000 0.00 0.00 0.00 5.68
122 123 4.007659 ACATTTGACCCTTTTAGCTACCG 58.992 43.478 0.00 0.00 0.00 4.02
123 124 4.094442 CGACATTTGACCCTTTTAGCTACC 59.906 45.833 0.00 0.00 0.00 3.18
124 125 4.933400 TCGACATTTGACCCTTTTAGCTAC 59.067 41.667 0.00 0.00 0.00 3.58
125 126 5.155278 TCGACATTTGACCCTTTTAGCTA 57.845 39.130 0.00 0.00 0.00 3.32
126 127 4.015872 TCGACATTTGACCCTTTTAGCT 57.984 40.909 0.00 0.00 0.00 3.32
127 128 4.759516 TTCGACATTTGACCCTTTTAGC 57.240 40.909 0.00 0.00 0.00 3.09
128 129 9.855021 AATTATTTCGACATTTGACCCTTTTAG 57.145 29.630 0.00 0.00 0.00 1.85
130 131 9.203421 GAAATTATTTCGACATTTGACCCTTTT 57.797 29.630 1.70 0.00 0.00 2.27
131 132 8.364142 TGAAATTATTTCGACATTTGACCCTTT 58.636 29.630 12.30 0.00 42.55 3.11
132 133 7.891561 TGAAATTATTTCGACATTTGACCCTT 58.108 30.769 12.30 0.00 42.55 3.95
133 134 7.461182 TGAAATTATTTCGACATTTGACCCT 57.539 32.000 12.30 0.00 42.55 4.34
134 135 8.432359 GTTTGAAATTATTTCGACATTTGACCC 58.568 33.333 12.30 0.00 42.55 4.46
135 136 8.432359 GGTTTGAAATTATTTCGACATTTGACC 58.568 33.333 18.64 13.58 42.55 4.02
136 137 8.153411 CGGTTTGAAATTATTTCGACATTTGAC 58.847 33.333 18.64 9.84 42.55 3.18
137 138 7.327275 CCGGTTTGAAATTATTTCGACATTTGA 59.673 33.333 18.64 0.52 42.55 2.69
138 139 7.411372 CCCGGTTTGAAATTATTTCGACATTTG 60.411 37.037 18.64 9.78 42.55 2.32
139 140 6.588373 CCCGGTTTGAAATTATTTCGACATTT 59.412 34.615 18.64 0.00 42.55 2.32
140 141 6.096695 CCCGGTTTGAAATTATTTCGACATT 58.903 36.000 18.64 0.00 42.55 2.71
141 142 5.393678 CCCCGGTTTGAAATTATTTCGACAT 60.394 40.000 18.64 0.00 42.55 3.06
142 143 4.082679 CCCCGGTTTGAAATTATTTCGACA 60.083 41.667 18.64 6.22 42.55 4.35
143 144 4.082625 ACCCCGGTTTGAAATTATTTCGAC 60.083 41.667 12.30 12.42 42.55 4.20
144 145 4.080687 ACCCCGGTTTGAAATTATTTCGA 58.919 39.130 12.30 8.20 42.55 3.71
145 146 4.082679 TGACCCCGGTTTGAAATTATTTCG 60.083 41.667 12.30 1.70 42.55 3.46
146 147 5.184287 TCTGACCCCGGTTTGAAATTATTTC 59.816 40.000 10.47 10.47 40.08 2.17
147 148 5.081032 TCTGACCCCGGTTTGAAATTATTT 58.919 37.500 0.00 0.00 0.00 1.40
148 149 4.668636 TCTGACCCCGGTTTGAAATTATT 58.331 39.130 0.00 0.00 0.00 1.40
149 150 4.310022 TCTGACCCCGGTTTGAAATTAT 57.690 40.909 0.00 0.00 0.00 1.28
150 151 3.791953 TCTGACCCCGGTTTGAAATTA 57.208 42.857 0.00 0.00 0.00 1.40
151 152 2.668144 TCTGACCCCGGTTTGAAATT 57.332 45.000 0.00 0.00 0.00 1.82
152 153 2.620627 GGATCTGACCCCGGTTTGAAAT 60.621 50.000 0.00 0.00 0.00 2.17
153 154 1.271707 GGATCTGACCCCGGTTTGAAA 60.272 52.381 0.00 0.00 0.00 2.69
154 155 0.326927 GGATCTGACCCCGGTTTGAA 59.673 55.000 0.00 0.00 0.00 2.69
155 156 0.546747 AGGATCTGACCCCGGTTTGA 60.547 55.000 0.00 0.00 0.00 2.69
156 157 0.392998 CAGGATCTGACCCCGGTTTG 60.393 60.000 0.00 0.00 32.44 2.93
157 158 0.546747 TCAGGATCTGACCCCGGTTT 60.547 55.000 0.00 0.00 35.39 3.27
158 159 0.326618 ATCAGGATCTGACCCCGGTT 60.327 55.000 0.00 0.00 43.63 4.44
159 160 0.326618 AATCAGGATCTGACCCCGGT 60.327 55.000 0.00 0.00 43.63 5.28
160 161 0.839946 AAATCAGGATCTGACCCCGG 59.160 55.000 0.00 0.00 43.63 5.73
161 162 2.717639 AAAATCAGGATCTGACCCCG 57.282 50.000 0.00 0.00 43.63 5.73
162 163 4.709250 GTCTAAAATCAGGATCTGACCCC 58.291 47.826 0.00 0.00 43.63 4.95
163 164 4.141914 ACGTCTAAAATCAGGATCTGACCC 60.142 45.833 0.00 0.00 43.63 4.46
164 165 4.806247 CACGTCTAAAATCAGGATCTGACC 59.194 45.833 0.00 0.00 43.63 4.02
165 166 5.651530 TCACGTCTAAAATCAGGATCTGAC 58.348 41.667 0.00 0.00 43.63 3.51
166 167 5.914898 TCACGTCTAAAATCAGGATCTGA 57.085 39.130 0.00 0.00 44.99 3.27
167 168 6.968131 TTTCACGTCTAAAATCAGGATCTG 57.032 37.500 0.00 0.00 0.00 2.90
168 169 6.595716 CCTTTTCACGTCTAAAATCAGGATCT 59.404 38.462 5.95 0.00 0.00 2.75
169 170 6.183360 CCCTTTTCACGTCTAAAATCAGGATC 60.183 42.308 5.95 0.00 0.00 3.36
170 171 5.648092 CCCTTTTCACGTCTAAAATCAGGAT 59.352 40.000 5.95 0.00 0.00 3.24
171 172 5.001232 CCCTTTTCACGTCTAAAATCAGGA 58.999 41.667 5.95 0.00 0.00 3.86
172 173 4.760204 ACCCTTTTCACGTCTAAAATCAGG 59.240 41.667 5.95 9.11 0.00 3.86
173 174 5.468746 TGACCCTTTTCACGTCTAAAATCAG 59.531 40.000 5.95 2.29 0.00 2.90
174 175 5.369833 TGACCCTTTTCACGTCTAAAATCA 58.630 37.500 5.95 5.13 0.00 2.57
175 176 5.934935 TGACCCTTTTCACGTCTAAAATC 57.065 39.130 5.95 3.11 0.00 2.17
176 177 6.702716 TTTGACCCTTTTCACGTCTAAAAT 57.297 33.333 5.95 0.00 0.00 1.82
177 178 6.072064 TGTTTTGACCCTTTTCACGTCTAAAA 60.072 34.615 5.49 5.49 34.60 1.52
178 179 5.415077 TGTTTTGACCCTTTTCACGTCTAAA 59.585 36.000 0.00 0.00 31.79 1.85
179 180 4.942483 TGTTTTGACCCTTTTCACGTCTAA 59.058 37.500 0.00 0.00 0.00 2.10
180 181 4.333372 GTGTTTTGACCCTTTTCACGTCTA 59.667 41.667 0.00 0.00 0.00 2.59
181 182 3.128068 GTGTTTTGACCCTTTTCACGTCT 59.872 43.478 0.00 0.00 0.00 4.18
182 183 3.431856 GTGTTTTGACCCTTTTCACGTC 58.568 45.455 0.00 0.00 0.00 4.34
183 184 2.159490 CGTGTTTTGACCCTTTTCACGT 60.159 45.455 0.00 0.00 41.01 4.49
184 185 2.096174 TCGTGTTTTGACCCTTTTCACG 59.904 45.455 8.19 8.19 45.10 4.35
185 186 3.768468 TCGTGTTTTGACCCTTTTCAC 57.232 42.857 0.00 0.00 0.00 3.18
186 187 4.785511 TTTCGTGTTTTGACCCTTTTCA 57.214 36.364 0.00 0.00 0.00 2.69
187 188 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
188 189 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
189 190 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
190 191 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
191 192 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
192 193 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
193 194 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02
195 196 4.245660 TGTGGCAAAATTTCGTGTTTTGA 58.754 34.783 19.19 4.49 45.02 2.69
196 197 4.590400 TGTGGCAAAATTTCGTGTTTTG 57.410 36.364 14.02 14.02 45.01 2.44
197 198 4.932200 TCTTGTGGCAAAATTTCGTGTTTT 59.068 33.333 0.00 0.00 0.00 2.43
198 199 4.499183 TCTTGTGGCAAAATTTCGTGTTT 58.501 34.783 0.00 0.00 0.00 2.83
199 200 4.111916 CTCTTGTGGCAAAATTTCGTGTT 58.888 39.130 0.00 0.00 0.00 3.32
200 201 3.490761 CCTCTTGTGGCAAAATTTCGTGT 60.491 43.478 0.00 0.00 0.00 4.49
201 202 3.052036 CCTCTTGTGGCAAAATTTCGTG 58.948 45.455 0.00 0.00 0.00 4.35
202 203 2.955660 TCCTCTTGTGGCAAAATTTCGT 59.044 40.909 0.00 0.00 0.00 3.85
203 204 3.253188 TCTCCTCTTGTGGCAAAATTTCG 59.747 43.478 0.00 0.00 0.00 3.46
204 205 4.321527 CCTCTCCTCTTGTGGCAAAATTTC 60.322 45.833 0.00 0.00 0.00 2.17
205 206 3.575687 CCTCTCCTCTTGTGGCAAAATTT 59.424 43.478 0.00 0.00 0.00 1.82
206 207 3.160269 CCTCTCCTCTTGTGGCAAAATT 58.840 45.455 0.00 0.00 0.00 1.82
207 208 2.376518 TCCTCTCCTCTTGTGGCAAAAT 59.623 45.455 0.00 0.00 0.00 1.82
208 209 1.774254 TCCTCTCCTCTTGTGGCAAAA 59.226 47.619 0.00 0.00 0.00 2.44
209 210 1.434188 TCCTCTCCTCTTGTGGCAAA 58.566 50.000 0.00 0.00 0.00 3.68
210 211 1.434188 TTCCTCTCCTCTTGTGGCAA 58.566 50.000 0.00 0.00 0.00 4.52
211 212 1.349026 CTTTCCTCTCCTCTTGTGGCA 59.651 52.381 0.00 0.00 0.00 4.92
212 213 1.349357 ACTTTCCTCTCCTCTTGTGGC 59.651 52.381 0.00 0.00 0.00 5.01
213 214 2.289945 CCACTTTCCTCTCCTCTTGTGG 60.290 54.545 0.00 0.00 37.87 4.17
214 215 2.289945 CCCACTTTCCTCTCCTCTTGTG 60.290 54.545 0.00 0.00 0.00 3.33
215 216 1.981495 CCCACTTTCCTCTCCTCTTGT 59.019 52.381 0.00 0.00 0.00 3.16
216 217 1.280421 CCCCACTTTCCTCTCCTCTTG 59.720 57.143 0.00 0.00 0.00 3.02
217 218 1.662686 CCCCACTTTCCTCTCCTCTT 58.337 55.000 0.00 0.00 0.00 2.85
218 219 0.252927 CCCCCACTTTCCTCTCCTCT 60.253 60.000 0.00 0.00 0.00 3.69
219 220 2.302019 CCCCCACTTTCCTCTCCTC 58.698 63.158 0.00 0.00 0.00 3.71
220 221 4.589569 CCCCCACTTTCCTCTCCT 57.410 61.111 0.00 0.00 0.00 3.69
235 236 4.416738 AGGAAGAGCGCTTGCCCC 62.417 66.667 17.61 11.15 42.79 5.80
236 237 2.811542 AAGAGGAAGAGCGCTTGCCC 62.812 60.000 17.61 13.11 42.79 5.36
237 238 0.957888 AAAGAGGAAGAGCGCTTGCC 60.958 55.000 17.61 13.82 42.79 4.52
238 239 0.167689 CAAAGAGGAAGAGCGCTTGC 59.832 55.000 13.26 13.73 42.19 4.01
239 240 1.196354 CACAAAGAGGAAGAGCGCTTG 59.804 52.381 13.26 4.64 33.61 4.01
240 241 1.070758 TCACAAAGAGGAAGAGCGCTT 59.929 47.619 13.26 0.95 36.96 4.68
241 242 0.681733 TCACAAAGAGGAAGAGCGCT 59.318 50.000 11.27 11.27 0.00 5.92
242 243 0.793250 GTCACAAAGAGGAAGAGCGC 59.207 55.000 0.00 0.00 0.00 5.92
243 244 2.447244 AGTCACAAAGAGGAAGAGCG 57.553 50.000 0.00 0.00 0.00 5.03
244 245 3.855858 CCTAGTCACAAAGAGGAAGAGC 58.144 50.000 0.00 0.00 0.00 4.09
245 246 3.368948 GGCCTAGTCACAAAGAGGAAGAG 60.369 52.174 0.00 0.00 0.00 2.85
246 247 2.567615 GGCCTAGTCACAAAGAGGAAGA 59.432 50.000 0.00 0.00 0.00 2.87
247 248 2.303022 TGGCCTAGTCACAAAGAGGAAG 59.697 50.000 3.32 0.00 0.00 3.46
248 249 2.038557 GTGGCCTAGTCACAAAGAGGAA 59.961 50.000 3.32 0.00 38.14 3.36
249 250 1.623811 GTGGCCTAGTCACAAAGAGGA 59.376 52.381 3.32 0.00 38.14 3.71
250 251 1.339151 GGTGGCCTAGTCACAAAGAGG 60.339 57.143 3.32 0.00 40.26 3.69
251 252 1.347707 TGGTGGCCTAGTCACAAAGAG 59.652 52.381 3.32 0.00 40.26 2.85
252 253 1.429930 TGGTGGCCTAGTCACAAAGA 58.570 50.000 3.32 0.00 40.26 2.52
253 254 2.496899 ATGGTGGCCTAGTCACAAAG 57.503 50.000 3.32 0.00 40.26 2.77
254 255 2.969821 AATGGTGGCCTAGTCACAAA 57.030 45.000 3.32 4.13 40.26 2.83
255 256 4.374689 TTTAATGGTGGCCTAGTCACAA 57.625 40.909 3.32 4.84 40.26 3.33
256 257 4.076394 GTTTTAATGGTGGCCTAGTCACA 58.924 43.478 3.32 0.00 40.26 3.58
257 258 3.442625 GGTTTTAATGGTGGCCTAGTCAC 59.557 47.826 3.32 5.25 37.44 3.67
258 259 3.562609 GGGTTTTAATGGTGGCCTAGTCA 60.563 47.826 3.32 0.00 0.00 3.41
259 260 3.021695 GGGTTTTAATGGTGGCCTAGTC 58.978 50.000 3.32 0.00 0.00 2.59
260 261 2.291996 GGGGTTTTAATGGTGGCCTAGT 60.292 50.000 3.32 0.00 0.00 2.57
261 262 2.291930 TGGGGTTTTAATGGTGGCCTAG 60.292 50.000 3.32 0.00 0.00 3.02
262 263 1.717077 TGGGGTTTTAATGGTGGCCTA 59.283 47.619 3.32 0.00 0.00 3.93
369 370 2.122167 CGGAGGAAGAGAGGGACCG 61.122 68.421 0.00 0.00 0.00 4.79
448 449 4.754114 CCAACTCCAGAAGAAGAAAGTGAG 59.246 45.833 0.00 0.00 0.00 3.51
455 456 1.362224 CCCCCAACTCCAGAAGAAGA 58.638 55.000 0.00 0.00 0.00 2.87
471 472 1.717032 AAGGAAAAGCTGGAAACCCC 58.283 50.000 0.00 0.00 0.00 4.95
581 587 3.493767 AACCCTCAACTCCAGAAGAAC 57.506 47.619 0.00 0.00 0.00 3.01
620 630 6.040391 TGAATCCCTGTTTCGTGAAAAGAAAT 59.960 34.615 0.00 0.00 45.48 2.17
648 661 2.885894 CCAACAATTTGCAGCCCAAAAT 59.114 40.909 4.49 0.00 45.80 1.82
908 1276 8.518430 AGGTAGCACATCATCATATAGACTAG 57.482 38.462 0.00 0.00 0.00 2.57
1016 1730 9.631452 CGATTGACTAGACATACATACATGAAT 57.369 33.333 0.00 0.00 0.00 2.57
1121 1893 9.301153 CCAAGGATTTAATGCTGTAAATTACAC 57.699 33.333 1.08 0.94 34.53 2.90
1181 1955 7.512992 ACATACTAGCTAGCCATCTTCAATTT 58.487 34.615 20.91 0.00 0.00 1.82
1212 2028 4.838423 TGTTTCCAGATAAGGAGAGTGACA 59.162 41.667 0.00 0.00 39.25 3.58
1213 2029 5.172205 GTGTTTCCAGATAAGGAGAGTGAC 58.828 45.833 0.00 0.00 39.25 3.67
1242 2059 1.581934 TCAAGACCAGCACTCAAACG 58.418 50.000 0.00 0.00 0.00 3.60
1268 2085 4.440525 CCCGTACTACCGCTTCTAATCAAA 60.441 45.833 0.00 0.00 0.00 2.69
1422 2282 3.068024 ACAACCGCAAGAATGAACAACAT 59.932 39.130 0.00 0.00 41.45 2.71
1579 2447 1.482182 CTGAGTCCGGATCAACATGGA 59.518 52.381 7.81 0.00 0.00 3.41
1674 2542 3.843999 CTGACTTAGCTCCTGTCTCAAC 58.156 50.000 12.68 0.00 0.00 3.18
1849 4028 2.679336 TCATTGTGAGTGAATGGCATCG 59.321 45.455 0.00 0.00 32.57 3.84
2084 4318 2.093500 AGACGAAGAGCAACATATGGCA 60.093 45.455 7.80 0.00 0.00 4.92
2245 4480 7.846066 AGGAGTATGGATTCATAGCTGTAATC 58.154 38.462 0.00 2.72 36.62 1.75
2364 4608 6.598525 CAACTACAATGCGACTTGTTAATGA 58.401 36.000 8.11 0.00 39.88 2.57
2385 4727 2.099756 AGAACCTTGACAGCAAAGCAAC 59.900 45.455 0.00 0.00 32.73 4.17
2437 4782 5.933617 AGTGAGATACATGTGTATGCCATT 58.066 37.500 9.11 3.01 40.99 3.16
2461 4806 7.271653 GTCTACAGAGAAACTTGTAATGTCTCG 59.728 40.741 0.00 0.00 39.76 4.04
2567 6341 7.168219 AGAAAGCAAGGTAGTGAATTACATCA 58.832 34.615 0.00 0.00 0.00 3.07
2671 6619 6.206634 TGCATTTAGGTAAAGGTCAGAACTTG 59.793 38.462 0.00 0.00 30.38 3.16
2679 6627 4.273724 GCTAGCTGCATTTAGGTAAAGGTC 59.726 45.833 7.70 0.00 42.31 3.85
2852 6808 1.581934 TCTTCTGAACCACAACAGCG 58.418 50.000 0.00 0.00 34.57 5.18
3087 7059 9.344309 GAGCTAAAGGATACGTATAAGCTAAAG 57.656 37.037 19.93 10.20 38.32 1.85
3115 7090 5.648247 AGTTCCTAAAGTGAGTAGGTACCA 58.352 41.667 15.94 0.00 38.92 3.25
3116 7091 6.602410 AAGTTCCTAAAGTGAGTAGGTACC 57.398 41.667 2.73 2.73 38.92 3.34
3136 7163 5.934625 CACAAAGAACTAGCCATCACTAAGT 59.065 40.000 0.00 0.00 0.00 2.24
3137 7164 5.163814 GCACAAAGAACTAGCCATCACTAAG 60.164 44.000 0.00 0.00 0.00 2.18
3149 7176 2.622942 CCTTGCCTTGCACAAAGAACTA 59.377 45.455 0.00 0.00 38.71 2.24
3668 9751 4.571176 GGTATAAGTACAAGCTGAGGCAAC 59.429 45.833 0.00 0.00 35.20 4.17
3980 10081 2.648304 TCCTACTACATAGCCTCCCGAT 59.352 50.000 0.00 0.00 0.00 4.18
4058 10159 3.737559 TCAGGCCATGAGGTAAACATT 57.262 42.857 5.01 0.00 37.19 2.71
4223 10338 7.032377 TGACATCTGCTCGATACATATATCC 57.968 40.000 0.00 0.00 34.71 2.59
4238 10353 3.550437 AGTACTTCCCATGACATCTGC 57.450 47.619 0.00 0.00 0.00 4.26
4287 10407 0.749049 GGATGAGGCAAGGCAAATCC 59.251 55.000 10.39 10.39 0.00 3.01
4297 10417 4.413189 TCTCCTTAATGAATGGATGAGGCA 59.587 41.667 0.00 0.00 0.00 4.75
4298 10418 4.978099 TCTCCTTAATGAATGGATGAGGC 58.022 43.478 0.00 0.00 0.00 4.70
4299 10419 6.835174 TCTTCTCCTTAATGAATGGATGAGG 58.165 40.000 0.00 0.00 0.00 3.86
4300 10420 7.656948 GTCTCTTCTCCTTAATGAATGGATGAG 59.343 40.741 0.00 0.00 0.00 2.90
4301 10421 7.346698 AGTCTCTTCTCCTTAATGAATGGATGA 59.653 37.037 0.00 0.00 0.00 2.92
4326 10446 8.732531 TCACCCGGTTTTTCAATAATTAACTAG 58.267 33.333 0.00 0.00 0.00 2.57
4357 10482 2.247790 GCTCAGCGGTTTGTGATGT 58.752 52.632 0.00 0.00 0.00 3.06
4407 10536 1.162800 GCGGTCTTGATGATGCCCTC 61.163 60.000 0.00 0.00 0.00 4.30
4488 10617 1.597663 CAAAGTCGGAGTCGTTTGCTT 59.402 47.619 0.00 0.00 37.69 3.91
4537 10666 2.111384 GACTCCACATAGCCTCTTCCA 58.889 52.381 0.00 0.00 0.00 3.53
4556 10685 1.380246 GGAATGGGCCTGCATGTGA 60.380 57.895 4.53 0.00 0.00 3.58
4572 10701 0.253044 GCAGGTGGCTGAGTTATGGA 59.747 55.000 0.00 0.00 40.25 3.41
4601 10730 2.047844 TCAGAGTTGGAGCTGCGC 60.048 61.111 0.00 0.00 32.27 6.09
4615 10744 2.082231 TCCTTCGTAGTTCTCCGTCAG 58.918 52.381 0.00 0.00 0.00 3.51
4634 10763 1.454201 GCCAACCTTGCCTACTTCTC 58.546 55.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.