Multiple sequence alignment - TraesCS1D01G159700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G159700 chr1D 100.000 2811 0 0 1 2811 225712182 225709372 0.000000e+00 5192
1 TraesCS1D01G159700 chr1D 86.207 203 18 4 316 509 225711595 225711394 7.890000e-51 211
2 TraesCS1D01G159700 chr1D 86.207 203 18 4 588 789 225711867 225711674 7.890000e-51 211
3 TraesCS1D01G159700 chr1B 86.000 1600 108 52 585 2143 325819182 325817658 0.000000e+00 1607
4 TraesCS1D01G159700 chr1B 93.486 568 13 8 2248 2811 325817644 325817097 0.000000e+00 822
5 TraesCS1D01G159700 chr1B 91.681 589 39 8 1 579 325819495 325818907 0.000000e+00 808
6 TraesCS1D01G159700 chr1A 88.988 781 32 15 2061 2811 292077913 292078669 0.000000e+00 917
7 TraesCS1D01G159700 chr1A 86.701 767 50 17 585 1334 292076456 292077187 0.000000e+00 804
8 TraesCS1D01G159700 chr1A 89.362 658 43 14 1339 1988 292077162 292077800 0.000000e+00 802
9 TraesCS1D01G159700 chr1A 90.136 588 48 9 1 581 292076144 292076728 0.000000e+00 756


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G159700 chr1D 225709372 225712182 2810 True 1871.333333 5192 90.804667 1 2811 3 chr1D.!!$R1 2810
1 TraesCS1D01G159700 chr1B 325817097 325819495 2398 True 1079.000000 1607 90.389000 1 2811 3 chr1B.!!$R1 2810
2 TraesCS1D01G159700 chr1A 292076144 292078669 2525 False 819.750000 917 88.796750 1 2811 4 chr1A.!!$F1 2810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 578 0.114954 AATGGTGGTTGAGGGCATGT 59.885 50.0 0.0 0.0 0.0 3.21 F
1224 1250 0.179037 AGACACACACAGCACAGCAT 60.179 50.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1609 0.179124 CTAGCTCACCTCCGCAGTTC 60.179 60.000 0.0 0.0 0.0 3.01 R
2553 2729 2.040178 ACCTCCAAGTTCTCGTGAGTT 58.960 47.619 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 8.603242 TGAGTAGAAAGTTTTTGTACCATCTC 57.397 34.615 5.54 0.00 0.00 2.75
181 183 1.666700 CAACTTGGACGTTCCGAACAA 59.333 47.619 11.74 0.00 40.17 2.83
265 267 7.094890 ACTGAACTTTGATCACATAGCAAGAAG 60.095 37.037 9.08 3.58 34.38 2.85
295 297 0.778083 AAGACCCAAGACCCCCTTTC 59.222 55.000 0.00 0.00 31.42 2.62
348 350 2.756760 TCATGCCAAAGCTTGATCCTTC 59.243 45.455 0.00 0.00 45.37 3.46
384 387 4.216257 CACGAACCATCTTCCAAACTCAAT 59.784 41.667 0.00 0.00 0.00 2.57
440 444 9.581289 TGAGAAATTGTTAGTCCCTTTATTCAA 57.419 29.630 0.00 0.00 0.00 2.69
495 499 2.483889 GGGTCCTAGATGCACTTACAGC 60.484 54.545 0.00 0.00 0.00 4.40
496 500 2.432510 GGTCCTAGATGCACTTACAGCT 59.567 50.000 0.00 0.00 40.04 4.24
497 501 3.118592 GGTCCTAGATGCACTTACAGCTT 60.119 47.826 0.00 0.00 37.50 3.74
498 502 3.868077 GTCCTAGATGCACTTACAGCTTG 59.132 47.826 0.00 0.00 37.50 4.01
499 503 3.769300 TCCTAGATGCACTTACAGCTTGA 59.231 43.478 0.00 0.00 37.50 3.02
500 504 3.868077 CCTAGATGCACTTACAGCTTGAC 59.132 47.826 0.00 0.00 37.50 3.18
501 505 3.692257 AGATGCACTTACAGCTTGACT 57.308 42.857 0.00 0.00 30.60 3.41
502 506 4.808414 AGATGCACTTACAGCTTGACTA 57.192 40.909 0.00 0.00 30.60 2.59
503 507 4.499183 AGATGCACTTACAGCTTGACTAC 58.501 43.478 0.00 0.00 30.60 2.73
504 508 4.221703 AGATGCACTTACAGCTTGACTACT 59.778 41.667 0.00 0.00 30.60 2.57
505 509 4.336889 TGCACTTACAGCTTGACTACTT 57.663 40.909 0.00 0.00 0.00 2.24
506 510 5.462530 TGCACTTACAGCTTGACTACTTA 57.537 39.130 0.00 0.00 0.00 2.24
507 511 5.227908 TGCACTTACAGCTTGACTACTTAC 58.772 41.667 0.00 0.00 0.00 2.34
508 512 5.221362 TGCACTTACAGCTTGACTACTTACA 60.221 40.000 0.00 0.00 0.00 2.41
509 513 5.869888 GCACTTACAGCTTGACTACTTACAT 59.130 40.000 0.00 0.00 0.00 2.29
510 514 6.183360 GCACTTACAGCTTGACTACTTACATG 60.183 42.308 0.00 0.00 0.00 3.21
511 515 7.090808 CACTTACAGCTTGACTACTTACATGA 58.909 38.462 0.00 0.00 0.00 3.07
512 516 7.062371 CACTTACAGCTTGACTACTTACATGAC 59.938 40.741 0.00 0.00 0.00 3.06
513 517 4.822026 ACAGCTTGACTACTTACATGACC 58.178 43.478 0.00 0.00 0.00 4.02
514 518 4.283467 ACAGCTTGACTACTTACATGACCA 59.717 41.667 0.00 0.00 0.00 4.02
515 519 4.627467 CAGCTTGACTACTTACATGACCAC 59.373 45.833 0.00 0.00 0.00 4.16
516 520 3.933332 GCTTGACTACTTACATGACCACC 59.067 47.826 0.00 0.00 0.00 4.61
517 521 4.562757 GCTTGACTACTTACATGACCACCA 60.563 45.833 0.00 0.00 0.00 4.17
518 522 5.734720 CTTGACTACTTACATGACCACCAT 58.265 41.667 0.00 0.00 35.44 3.55
529 533 4.895668 ATGACCACCATGATTGCTTTTT 57.104 36.364 0.00 0.00 33.39 1.94
553 557 8.873215 TTTTTCCACTCAATTGCGTAAATAAA 57.127 26.923 0.00 0.00 0.00 1.40
554 558 9.482627 TTTTTCCACTCAATTGCGTAAATAAAT 57.517 25.926 0.00 0.00 0.00 1.40
558 562 9.729023 TCCACTCAATTGCGTAAATAAATAATG 57.271 29.630 0.00 0.00 0.00 1.90
559 563 8.967218 CCACTCAATTGCGTAAATAAATAATGG 58.033 33.333 0.00 0.00 0.00 3.16
560 564 9.515020 CACTCAATTGCGTAAATAAATAATGGT 57.485 29.630 0.00 0.00 0.00 3.55
561 565 9.515020 ACTCAATTGCGTAAATAAATAATGGTG 57.485 29.630 0.00 0.00 0.00 4.17
562 566 8.864069 TCAATTGCGTAAATAAATAATGGTGG 57.136 30.769 0.00 0.00 0.00 4.61
563 567 8.470805 TCAATTGCGTAAATAAATAATGGTGGT 58.529 29.630 0.00 0.00 0.00 4.16
564 568 9.092876 CAATTGCGTAAATAAATAATGGTGGTT 57.907 29.630 0.00 0.00 0.00 3.67
565 569 8.641499 ATTGCGTAAATAAATAATGGTGGTTG 57.359 30.769 0.00 0.00 0.00 3.77
566 570 7.392494 TGCGTAAATAAATAATGGTGGTTGA 57.608 32.000 0.00 0.00 0.00 3.18
567 571 7.476667 TGCGTAAATAAATAATGGTGGTTGAG 58.523 34.615 0.00 0.00 0.00 3.02
568 572 6.915843 GCGTAAATAAATAATGGTGGTTGAGG 59.084 38.462 0.00 0.00 0.00 3.86
569 573 7.422399 CGTAAATAAATAATGGTGGTTGAGGG 58.578 38.462 0.00 0.00 0.00 4.30
570 574 5.869649 AATAAATAATGGTGGTTGAGGGC 57.130 39.130 0.00 0.00 0.00 5.19
571 575 2.917713 AATAATGGTGGTTGAGGGCA 57.082 45.000 0.00 0.00 0.00 5.36
572 576 3.403228 AATAATGGTGGTTGAGGGCAT 57.597 42.857 0.00 0.00 0.00 4.40
573 577 2.142356 TAATGGTGGTTGAGGGCATG 57.858 50.000 0.00 0.00 0.00 4.06
574 578 0.114954 AATGGTGGTTGAGGGCATGT 59.885 50.000 0.00 0.00 0.00 3.21
575 579 0.998928 ATGGTGGTTGAGGGCATGTA 59.001 50.000 0.00 0.00 0.00 2.29
576 580 0.774276 TGGTGGTTGAGGGCATGTAA 59.226 50.000 0.00 0.00 0.00 2.41
577 581 1.145945 TGGTGGTTGAGGGCATGTAAA 59.854 47.619 0.00 0.00 0.00 2.01
578 582 1.544246 GGTGGTTGAGGGCATGTAAAC 59.456 52.381 0.00 0.00 0.00 2.01
579 583 2.235016 GTGGTTGAGGGCATGTAAACA 58.765 47.619 0.00 0.00 0.00 2.83
580 584 2.825532 GTGGTTGAGGGCATGTAAACAT 59.174 45.455 0.00 0.00 36.96 2.71
594 598 7.673810 CATGTAAACATGTATACGACTCGAA 57.326 36.000 13.76 0.00 46.40 3.71
595 599 7.765009 CATGTAAACATGTATACGACTCGAAG 58.235 38.462 13.76 0.00 46.40 3.79
596 600 6.845302 TGTAAACATGTATACGACTCGAAGT 58.155 36.000 5.20 0.00 0.00 3.01
597 601 6.744082 TGTAAACATGTATACGACTCGAAGTG 59.256 38.462 5.20 0.00 0.00 3.16
598 602 5.556355 AACATGTATACGACTCGAAGTGA 57.444 39.130 5.20 0.00 0.00 3.41
599 603 5.752892 ACATGTATACGACTCGAAGTGAT 57.247 39.130 5.20 0.00 0.00 3.06
600 604 5.749620 ACATGTATACGACTCGAAGTGATC 58.250 41.667 5.20 0.00 0.00 2.92
601 605 5.296035 ACATGTATACGACTCGAAGTGATCA 59.704 40.000 5.20 0.00 0.00 2.92
602 606 6.017026 ACATGTATACGACTCGAAGTGATCAT 60.017 38.462 5.20 0.00 0.00 2.45
603 607 5.748592 TGTATACGACTCGAAGTGATCATG 58.251 41.667 5.20 0.00 0.00 3.07
604 608 1.914634 ACGACTCGAAGTGATCATGC 58.085 50.000 5.20 0.00 0.00 4.06
605 609 1.203928 CGACTCGAAGTGATCATGCC 58.796 55.000 0.00 0.00 0.00 4.40
606 610 1.469767 CGACTCGAAGTGATCATGCCA 60.470 52.381 0.00 0.00 0.00 4.92
607 611 2.621338 GACTCGAAGTGATCATGCCAA 58.379 47.619 0.00 0.00 0.00 4.52
608 612 3.002791 GACTCGAAGTGATCATGCCAAA 58.997 45.455 0.00 0.00 0.00 3.28
609 613 3.005554 ACTCGAAGTGATCATGCCAAAG 58.994 45.455 0.00 0.00 0.00 2.77
610 614 1.739466 TCGAAGTGATCATGCCAAAGC 59.261 47.619 0.00 0.00 40.48 3.51
611 615 1.741706 CGAAGTGATCATGCCAAAGCT 59.258 47.619 0.00 0.00 40.80 3.74
612 616 2.163010 CGAAGTGATCATGCCAAAGCTT 59.837 45.455 0.00 0.00 40.80 3.74
613 617 3.508762 GAAGTGATCATGCCAAAGCTTG 58.491 45.455 0.00 0.00 43.68 4.01
618 622 2.519771 TCATGCCAAAGCTTGATCCT 57.480 45.000 0.00 0.00 45.37 3.24
619 623 2.811410 TCATGCCAAAGCTTGATCCTT 58.189 42.857 0.00 0.00 45.37 3.36
620 624 3.966979 TCATGCCAAAGCTTGATCCTTA 58.033 40.909 0.00 0.00 45.37 2.69
621 625 3.949754 TCATGCCAAAGCTTGATCCTTAG 59.050 43.478 0.00 0.00 45.37 2.18
622 626 2.726821 TGCCAAAGCTTGATCCTTAGG 58.273 47.619 0.00 0.00 40.80 2.69
623 627 2.041620 TGCCAAAGCTTGATCCTTAGGT 59.958 45.455 0.00 0.00 40.80 3.08
624 628 3.092301 GCCAAAGCTTGATCCTTAGGTT 58.908 45.455 0.00 0.00 35.50 3.50
625 629 3.511540 GCCAAAGCTTGATCCTTAGGTTT 59.488 43.478 0.00 9.59 41.32 3.27
626 630 4.380973 GCCAAAGCTTGATCCTTAGGTTTC 60.381 45.833 0.00 0.00 39.34 2.78
627 631 4.142600 CCAAAGCTTGATCCTTAGGTTTCG 60.143 45.833 0.00 4.91 39.34 3.46
628 632 4.553330 AAGCTTGATCCTTAGGTTTCGA 57.447 40.909 0.00 0.00 0.00 3.71
629 633 4.130286 AGCTTGATCCTTAGGTTTCGAG 57.870 45.455 13.30 13.30 0.00 4.04
630 634 3.118592 AGCTTGATCCTTAGGTTTCGAGG 60.119 47.826 16.90 0.00 0.00 4.63
631 635 3.798202 CTTGATCCTTAGGTTTCGAGGG 58.202 50.000 0.00 0.00 0.00 4.30
632 636 2.116238 TGATCCTTAGGTTTCGAGGGG 58.884 52.381 0.00 0.00 0.00 4.79
633 637 2.117051 GATCCTTAGGTTTCGAGGGGT 58.883 52.381 0.00 0.00 0.00 4.95
634 638 1.565067 TCCTTAGGTTTCGAGGGGTC 58.435 55.000 0.00 0.00 0.00 4.46
635 639 1.203212 TCCTTAGGTTTCGAGGGGTCA 60.203 52.381 0.00 0.00 0.00 4.02
636 640 1.066358 CCTTAGGTTTCGAGGGGTCAC 60.066 57.143 0.00 0.00 0.00 3.67
637 641 0.604578 TTAGGTTTCGAGGGGTCACG 59.395 55.000 0.00 0.00 0.00 4.35
638 642 1.252904 TAGGTTTCGAGGGGTCACGG 61.253 60.000 0.00 0.00 0.00 4.94
639 643 2.576832 GGTTTCGAGGGGTCACGGA 61.577 63.158 0.00 0.00 0.00 4.69
640 644 1.373873 GTTTCGAGGGGTCACGGAC 60.374 63.158 0.00 0.00 0.00 4.79
649 653 3.708210 GTCACGGACCATCCTCCA 58.292 61.111 0.00 0.00 33.30 3.86
650 654 1.980052 GTCACGGACCATCCTCCAA 59.020 57.895 0.00 0.00 33.30 3.53
651 655 0.323629 GTCACGGACCATCCTCCAAA 59.676 55.000 0.00 0.00 33.30 3.28
652 656 0.323629 TCACGGACCATCCTCCAAAC 59.676 55.000 0.00 0.00 33.30 2.93
653 657 0.324943 CACGGACCATCCTCCAAACT 59.675 55.000 0.00 0.00 33.30 2.66
654 658 0.613777 ACGGACCATCCTCCAAACTC 59.386 55.000 0.00 0.00 33.30 3.01
655 659 0.613260 CGGACCATCCTCCAAACTCA 59.387 55.000 0.00 0.00 33.30 3.41
656 660 1.003118 CGGACCATCCTCCAAACTCAA 59.997 52.381 0.00 0.00 33.30 3.02
657 661 2.437413 GGACCATCCTCCAAACTCAAC 58.563 52.381 0.00 0.00 32.53 3.18
658 662 2.224769 GGACCATCCTCCAAACTCAACA 60.225 50.000 0.00 0.00 32.53 3.33
659 663 3.486383 GACCATCCTCCAAACTCAACAA 58.514 45.455 0.00 0.00 0.00 2.83
660 664 3.222603 ACCATCCTCCAAACTCAACAAC 58.777 45.455 0.00 0.00 0.00 3.32
661 665 3.117512 ACCATCCTCCAAACTCAACAACT 60.118 43.478 0.00 0.00 0.00 3.16
662 666 3.891366 CCATCCTCCAAACTCAACAACTT 59.109 43.478 0.00 0.00 0.00 2.66
663 667 4.342092 CCATCCTCCAAACTCAACAACTTT 59.658 41.667 0.00 0.00 0.00 2.66
664 668 5.163416 CCATCCTCCAAACTCAACAACTTTT 60.163 40.000 0.00 0.00 0.00 2.27
665 669 5.323371 TCCTCCAAACTCAACAACTTTTG 57.677 39.130 0.00 0.00 0.00 2.44
666 670 4.159506 TCCTCCAAACTCAACAACTTTTGG 59.840 41.667 5.72 5.72 46.36 3.28
667 671 4.432712 CTCCAAACTCAACAACTTTTGGG 58.567 43.478 11.11 0.67 45.46 4.12
668 672 4.090090 TCCAAACTCAACAACTTTTGGGA 58.910 39.130 11.11 0.00 45.46 4.37
669 673 4.081917 TCCAAACTCAACAACTTTTGGGAC 60.082 41.667 11.11 0.00 45.46 4.46
670 674 4.081697 CCAAACTCAACAACTTTTGGGACT 60.082 41.667 4.34 0.00 42.88 3.85
671 675 5.126384 CCAAACTCAACAACTTTTGGGACTA 59.874 40.000 4.34 0.00 42.88 2.59
672 676 6.183360 CCAAACTCAACAACTTTTGGGACTAT 60.183 38.462 4.34 0.00 42.88 2.12
673 677 7.013846 CCAAACTCAACAACTTTTGGGACTATA 59.986 37.037 4.34 0.00 42.88 1.31
674 678 7.506328 AACTCAACAACTTTTGGGACTATAC 57.494 36.000 0.00 0.00 30.82 1.47
675 679 6.597562 ACTCAACAACTTTTGGGACTATACA 58.402 36.000 0.00 0.00 30.82 2.29
676 680 6.485648 ACTCAACAACTTTTGGGACTATACAC 59.514 38.462 0.00 0.00 30.82 2.90
677 681 6.597562 TCAACAACTTTTGGGACTATACACT 58.402 36.000 0.00 0.00 34.12 3.55
678 682 7.737869 TCAACAACTTTTGGGACTATACACTA 58.262 34.615 0.00 0.00 34.12 2.74
679 683 8.380099 TCAACAACTTTTGGGACTATACACTAT 58.620 33.333 0.00 0.00 34.12 2.12
680 684 9.661563 CAACAACTTTTGGGACTATACACTATA 57.338 33.333 0.00 0.00 34.12 1.31
681 685 9.886132 AACAACTTTTGGGACTATACACTATAG 57.114 33.333 0.00 0.00 38.55 1.31
682 686 7.985752 ACAACTTTTGGGACTATACACTATAGC 59.014 37.037 0.00 0.00 37.33 2.97
683 687 7.916077 ACTTTTGGGACTATACACTATAGCT 57.084 36.000 0.00 0.00 41.43 3.32
684 688 7.727181 ACTTTTGGGACTATACACTATAGCTG 58.273 38.462 0.00 0.42 41.43 4.24
685 689 7.563924 ACTTTTGGGACTATACACTATAGCTGA 59.436 37.037 0.00 0.00 41.43 4.26
686 690 8.492415 TTTTGGGACTATACACTATAGCTGAT 57.508 34.615 0.00 0.00 41.43 2.90
687 691 7.704578 TTGGGACTATACACTATAGCTGATC 57.295 40.000 0.00 0.00 41.43 2.92
688 692 5.880887 TGGGACTATACACTATAGCTGATCG 59.119 44.000 0.00 0.00 41.43 3.69
689 693 6.114089 GGGACTATACACTATAGCTGATCGA 58.886 44.000 0.00 0.00 41.43 3.59
690 694 6.037391 GGGACTATACACTATAGCTGATCGAC 59.963 46.154 0.00 0.00 41.43 4.20
691 695 6.594547 GGACTATACACTATAGCTGATCGACA 59.405 42.308 0.00 0.00 41.43 4.35
692 696 7.367159 ACTATACACTATAGCTGATCGACAC 57.633 40.000 0.00 0.00 41.43 3.67
693 697 7.162761 ACTATACACTATAGCTGATCGACACT 58.837 38.462 0.00 0.00 41.43 3.55
694 698 6.885952 ATACACTATAGCTGATCGACACTT 57.114 37.500 0.00 0.00 0.00 3.16
695 699 5.584253 ACACTATAGCTGATCGACACTTT 57.416 39.130 0.00 0.00 0.00 2.66
696 700 5.344066 ACACTATAGCTGATCGACACTTTG 58.656 41.667 0.00 0.00 0.00 2.77
697 701 5.125578 ACACTATAGCTGATCGACACTTTGA 59.874 40.000 0.00 0.00 0.00 2.69
698 702 5.685068 CACTATAGCTGATCGACACTTTGAG 59.315 44.000 0.00 0.00 0.00 3.02
699 703 4.991153 ATAGCTGATCGACACTTTGAGA 57.009 40.909 0.00 0.00 0.00 3.27
700 704 3.667497 AGCTGATCGACACTTTGAGAA 57.333 42.857 0.00 0.00 0.00 2.87
701 705 3.995199 AGCTGATCGACACTTTGAGAAA 58.005 40.909 0.00 0.00 0.00 2.52
702 706 4.573900 AGCTGATCGACACTTTGAGAAAT 58.426 39.130 0.00 0.00 0.00 2.17
703 707 4.999950 AGCTGATCGACACTTTGAGAAATT 59.000 37.500 0.00 0.00 0.00 1.82
704 708 5.471456 AGCTGATCGACACTTTGAGAAATTT 59.529 36.000 0.00 0.00 0.00 1.82
705 709 6.016777 AGCTGATCGACACTTTGAGAAATTTT 60.017 34.615 0.00 0.00 0.00 1.82
706 710 7.173218 AGCTGATCGACACTTTGAGAAATTTTA 59.827 33.333 0.00 0.00 0.00 1.52
707 711 7.479916 GCTGATCGACACTTTGAGAAATTTTAG 59.520 37.037 0.00 0.00 0.00 1.85
708 712 8.378172 TGATCGACACTTTGAGAAATTTTAGT 57.622 30.769 0.00 0.00 0.00 2.24
709 713 8.495949 TGATCGACACTTTGAGAAATTTTAGTC 58.504 33.333 0.00 0.00 0.00 2.59
710 714 7.186021 TCGACACTTTGAGAAATTTTAGTCC 57.814 36.000 0.00 0.00 0.00 3.85
711 715 6.204108 TCGACACTTTGAGAAATTTTAGTCCC 59.796 38.462 0.00 0.00 0.00 4.46
712 716 6.204882 CGACACTTTGAGAAATTTTAGTCCCT 59.795 38.462 0.00 0.00 0.00 4.20
713 717 7.255139 CGACACTTTGAGAAATTTTAGTCCCTT 60.255 37.037 0.00 0.00 0.00 3.95
714 718 8.306313 ACACTTTGAGAAATTTTAGTCCCTTT 57.694 30.769 0.00 0.00 0.00 3.11
715 719 9.416284 ACACTTTGAGAAATTTTAGTCCCTTTA 57.584 29.630 0.00 0.00 0.00 1.85
729 733 9.856162 TTTAGTCCCTTTATTTAGTCTTGTTGT 57.144 29.630 0.00 0.00 0.00 3.32
730 734 7.981102 AGTCCCTTTATTTAGTCTTGTTGTC 57.019 36.000 0.00 0.00 0.00 3.18
731 735 7.514721 AGTCCCTTTATTTAGTCTTGTTGTCA 58.485 34.615 0.00 0.00 0.00 3.58
732 736 8.164070 AGTCCCTTTATTTAGTCTTGTTGTCAT 58.836 33.333 0.00 0.00 0.00 3.06
733 737 9.444600 GTCCCTTTATTTAGTCTTGTTGTCATA 57.555 33.333 0.00 0.00 0.00 2.15
745 749 9.683069 AGTCTTGTTGTCATAAATCATCAAAAC 57.317 29.630 0.00 0.00 0.00 2.43
746 750 8.915654 GTCTTGTTGTCATAAATCATCAAAACC 58.084 33.333 0.00 0.00 0.00 3.27
747 751 8.087750 TCTTGTTGTCATAAATCATCAAAACCC 58.912 33.333 0.00 0.00 0.00 4.11
748 752 7.295322 TGTTGTCATAAATCATCAAAACCCA 57.705 32.000 0.00 0.00 0.00 4.51
749 753 7.151308 TGTTGTCATAAATCATCAAAACCCAC 58.849 34.615 0.00 0.00 0.00 4.61
750 754 7.015098 TGTTGTCATAAATCATCAAAACCCACT 59.985 33.333 0.00 0.00 0.00 4.00
751 755 8.519526 GTTGTCATAAATCATCAAAACCCACTA 58.480 33.333 0.00 0.00 0.00 2.74
752 756 8.821686 TGTCATAAATCATCAAAACCCACTAT 57.178 30.769 0.00 0.00 0.00 2.12
753 757 8.685427 TGTCATAAATCATCAAAACCCACTATG 58.315 33.333 0.00 0.00 0.00 2.23
754 758 8.137437 GTCATAAATCATCAAAACCCACTATGG 58.863 37.037 0.00 0.00 37.25 2.74
763 767 3.087253 CCACTATGGGGGCCGTGA 61.087 66.667 9.71 0.00 32.67 4.35
764 768 2.452064 CCACTATGGGGGCCGTGAT 61.452 63.158 9.71 0.00 32.67 3.06
765 769 1.227943 CACTATGGGGGCCGTGATG 60.228 63.158 0.00 0.00 0.00 3.07
766 770 2.281761 CTATGGGGGCCGTGATGC 60.282 66.667 0.00 0.00 0.00 3.91
767 771 3.093172 TATGGGGGCCGTGATGCA 61.093 61.111 0.00 0.00 0.00 3.96
768 772 3.414136 TATGGGGGCCGTGATGCAC 62.414 63.158 0.00 0.00 0.00 4.57
770 774 4.740822 GGGGGCCGTGATGCACTT 62.741 66.667 0.00 0.00 34.20 3.16
771 775 2.270850 GGGGCCGTGATGCACTTA 59.729 61.111 0.00 0.00 34.20 2.24
772 776 2.112815 GGGGCCGTGATGCACTTAC 61.113 63.158 0.00 0.00 34.20 2.34
773 777 1.376683 GGGCCGTGATGCACTTACA 60.377 57.895 0.00 0.00 31.34 2.41
774 778 0.958382 GGGCCGTGATGCACTTACAA 60.958 55.000 0.00 0.00 31.34 2.41
796 803 3.291101 GACTACTTCCACGGCCGCA 62.291 63.158 28.58 6.48 0.00 5.69
809 816 1.601903 CGGCCGCAATTGCTTATCTTA 59.398 47.619 26.86 0.00 39.32 2.10
810 817 2.032799 CGGCCGCAATTGCTTATCTTAA 59.967 45.455 26.86 0.00 39.32 1.85
811 818 3.632189 GGCCGCAATTGCTTATCTTAAG 58.368 45.455 26.86 8.81 39.32 1.85
812 819 3.550842 GGCCGCAATTGCTTATCTTAAGG 60.551 47.826 26.86 17.74 39.32 2.69
813 820 3.632189 CCGCAATTGCTTATCTTAAGGC 58.368 45.455 26.86 0.00 39.32 4.35
814 821 3.316308 CCGCAATTGCTTATCTTAAGGCT 59.684 43.478 26.86 0.00 39.32 4.58
815 822 4.515191 CCGCAATTGCTTATCTTAAGGCTA 59.485 41.667 26.86 0.00 39.32 3.93
816 823 5.008613 CCGCAATTGCTTATCTTAAGGCTAA 59.991 40.000 26.86 1.01 39.32 3.09
817 824 6.138761 CGCAATTGCTTATCTTAAGGCTAAG 58.861 40.000 26.86 15.73 39.32 2.18
818 825 5.917447 GCAATTGCTTATCTTAAGGCTAAGC 59.083 40.000 26.92 26.92 44.79 3.09
824 831 7.503521 GCTTATCTTAAGGCTAAGCAAGATT 57.496 36.000 27.79 2.36 44.24 2.40
825 832 7.935520 GCTTATCTTAAGGCTAAGCAAGATTT 58.064 34.615 27.79 0.00 44.24 2.17
826 833 8.409371 GCTTATCTTAAGGCTAAGCAAGATTTT 58.591 33.333 27.79 0.00 44.24 1.82
872 881 8.938801 AATAATGATATGTTTGAGGGCATGTA 57.061 30.769 0.00 0.00 0.00 2.29
891 910 5.398603 TGTAAACATCCATGCCGAAATTT 57.601 34.783 0.00 0.00 0.00 1.82
905 924 5.592282 TGCCGAAATTTATCTAGCATCCAAA 59.408 36.000 0.00 0.00 0.00 3.28
937 956 3.325870 TGAAGTTCTGTTCAGGTATGCG 58.674 45.455 4.17 0.00 32.54 4.73
938 957 1.726853 AGTTCTGTTCAGGTATGCGC 58.273 50.000 0.00 0.00 0.00 6.09
939 958 0.727398 GTTCTGTTCAGGTATGCGCC 59.273 55.000 4.18 0.00 0.00 6.53
940 959 0.613260 TTCTGTTCAGGTATGCGCCT 59.387 50.000 4.18 0.00 39.99 5.52
941 960 1.480789 TCTGTTCAGGTATGCGCCTA 58.519 50.000 4.18 0.00 37.04 3.93
942 961 2.039418 TCTGTTCAGGTATGCGCCTAT 58.961 47.619 4.18 0.00 37.04 2.57
943 962 2.138320 CTGTTCAGGTATGCGCCTATG 58.862 52.381 4.18 0.00 37.04 2.23
944 963 0.868406 GTTCAGGTATGCGCCTATGC 59.132 55.000 4.18 0.00 37.04 3.14
1117 1137 2.520741 CCCGCCCACCAAACAAGT 60.521 61.111 0.00 0.00 0.00 3.16
1122 1142 1.620822 GCCCACCAAACAAGTCAGAT 58.379 50.000 0.00 0.00 0.00 2.90
1134 1154 3.697045 ACAAGTCAGATCCTCTAGAACCG 59.303 47.826 0.00 0.00 0.00 4.44
1193 1213 1.518056 CGCACCACAAGAGCAACCAT 61.518 55.000 0.00 0.00 0.00 3.55
1197 1217 0.883833 CCACAAGAGCAACCATCCAC 59.116 55.000 0.00 0.00 0.00 4.02
1198 1218 1.608055 CACAAGAGCAACCATCCACA 58.392 50.000 0.00 0.00 0.00 4.17
1199 1219 2.165167 CACAAGAGCAACCATCCACAT 58.835 47.619 0.00 0.00 0.00 3.21
1200 1220 2.163010 CACAAGAGCAACCATCCACATC 59.837 50.000 0.00 0.00 0.00 3.06
1202 1222 0.994247 AGAGCAACCATCCACATCCA 59.006 50.000 0.00 0.00 0.00 3.41
1203 1223 1.098050 GAGCAACCATCCACATCCAC 58.902 55.000 0.00 0.00 0.00 4.02
1204 1224 0.677731 AGCAACCATCCACATCCACG 60.678 55.000 0.00 0.00 0.00 4.94
1205 1225 0.676466 GCAACCATCCACATCCACGA 60.676 55.000 0.00 0.00 0.00 4.35
1224 1250 0.179037 AGACACACACAGCACAGCAT 60.179 50.000 0.00 0.00 0.00 3.79
1239 1265 1.719709 GCATCGGCGTAAAGGGAAC 59.280 57.895 6.85 0.00 0.00 3.62
1242 1268 0.392060 ATCGGCGTAAAGGGAACACC 60.392 55.000 6.85 0.00 40.67 4.16
1243 1269 1.301874 CGGCGTAAAGGGAACACCA 60.302 57.895 0.00 0.00 43.89 4.17
1405 1433 1.591703 CTCAACGAGGCCTGCTACA 59.408 57.895 12.00 0.00 0.00 2.74
1622 1651 2.880890 CTGCTGCTTCACTTGGTTAACT 59.119 45.455 5.42 0.00 0.00 2.24
1623 1652 4.065088 CTGCTGCTTCACTTGGTTAACTA 58.935 43.478 5.42 0.00 0.00 2.24
1624 1653 4.456535 TGCTGCTTCACTTGGTTAACTAA 58.543 39.130 5.42 4.78 0.00 2.24
1625 1654 4.274950 TGCTGCTTCACTTGGTTAACTAAC 59.725 41.667 5.42 0.00 35.50 2.34
1654 1683 4.093115 GCACATGAATGAACTGAGACTGAG 59.907 45.833 0.00 0.00 0.00 3.35
1680 1711 0.412244 ACCCCACCAGAGTGCTAGTA 59.588 55.000 0.00 0.00 43.09 1.82
1699 1730 8.372459 TGCTAGTACATTCAAACCTAAGAGAAA 58.628 33.333 0.00 0.00 0.00 2.52
1703 1734 9.367444 AGTACATTCAAACCTAAGAGAAATACG 57.633 33.333 0.00 0.00 0.00 3.06
1706 1737 9.367444 ACATTCAAACCTAAGAGAAATACGTAG 57.633 33.333 0.08 0.00 0.00 3.51
1707 1738 9.582431 CATTCAAACCTAAGAGAAATACGTAGA 57.418 33.333 0.08 0.00 0.00 2.59
1709 1740 9.582431 TTCAAACCTAAGAGAAATACGTAGATG 57.418 33.333 0.08 0.00 0.00 2.90
1713 1744 8.977267 ACCTAAGAGAAATACGTAGATGTACT 57.023 34.615 0.08 0.00 0.00 2.73
1714 1745 8.838365 ACCTAAGAGAAATACGTAGATGTACTG 58.162 37.037 0.08 0.00 0.00 2.74
1717 1748 6.127793 AGAGAAATACGTAGATGTACTGGGT 58.872 40.000 0.08 0.00 0.00 4.51
1721 1752 8.921205 AGAAATACGTAGATGTACTGGGTTTAT 58.079 33.333 0.08 0.00 0.00 1.40
1752 1787 1.933181 TGCCGTTCGAGCTCATTATTG 59.067 47.619 15.40 0.00 0.00 1.90
1756 1791 4.033587 GCCGTTCGAGCTCATTATTGTAAA 59.966 41.667 15.40 0.00 0.00 2.01
1760 1795 8.495949 CCGTTCGAGCTCATTATTGTAAATAAT 58.504 33.333 15.40 0.41 0.00 1.28
1788 1828 5.010213 TGAGCTGGTTATGTTTTGGGTTTAC 59.990 40.000 0.00 0.00 0.00 2.01
1848 1888 3.069158 GCTGAATGGCAAGCTTGGATAAT 59.931 43.478 27.10 1.64 0.00 1.28
1900 1940 4.618920 AATAAGACGTCCTGGTCAACTT 57.381 40.909 13.01 0.00 39.42 2.66
1960 2001 6.476706 GCCATTCAGTTGCTGGAATTATTTAC 59.523 38.462 5.17 0.00 31.38 2.01
1988 2029 3.556775 TGTACTTTGACTACGTTGCAACC 59.443 43.478 23.42 9.73 0.00 3.77
2117 2264 3.559655 TGACTGAACTGAAACCAATCACG 59.440 43.478 0.00 0.00 0.00 4.35
2173 2320 1.669779 TGCAAAACAAACATGCAAGGC 59.330 42.857 0.00 0.00 46.23 4.35
2174 2321 1.002576 GCAAAACAAACATGCAAGGCC 60.003 47.619 0.00 0.00 39.81 5.19
2176 2323 2.879646 CAAAACAAACATGCAAGGCCAT 59.120 40.909 5.01 0.00 0.00 4.40
2179 2327 5.674052 AAACAAACATGCAAGGCCATATA 57.326 34.783 5.01 0.00 0.00 0.86
2181 2329 5.204409 ACAAACATGCAAGGCCATATATG 57.796 39.130 5.01 5.68 0.00 1.78
2187 2335 2.886523 TGCAAGGCCATATATGCAAGTC 59.113 45.455 5.01 0.00 45.04 3.01
2188 2336 2.229784 GCAAGGCCATATATGCAAGTCC 59.770 50.000 5.01 3.29 38.63 3.85
2216 2364 4.320275 GCATGGATGAATAGATGCACACAG 60.320 45.833 0.00 0.00 40.78 3.66
2225 2373 1.089920 GATGCACACAGCCTACTTGG 58.910 55.000 0.00 0.00 44.83 3.61
2267 2422 7.496263 ACCGCATACAAACATATACATACACAA 59.504 33.333 0.00 0.00 0.00 3.33
2307 2479 2.245806 CAATCCCCAATCTCTCCCCTTT 59.754 50.000 0.00 0.00 0.00 3.11
2308 2480 2.074922 TCCCCAATCTCTCCCCTTTT 57.925 50.000 0.00 0.00 0.00 2.27
2309 2481 3.230143 TCCCCAATCTCTCCCCTTTTA 57.770 47.619 0.00 0.00 0.00 1.52
2310 2482 3.547903 TCCCCAATCTCTCCCCTTTTAA 58.452 45.455 0.00 0.00 0.00 1.52
2311 2483 3.527665 TCCCCAATCTCTCCCCTTTTAAG 59.472 47.826 0.00 0.00 0.00 1.85
2312 2484 3.291584 CCCAATCTCTCCCCTTTTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
2319 2491 5.586877 TCTCTCCCCTTTTAAGCAGTAGTA 58.413 41.667 0.00 0.00 0.00 1.82
2323 2495 6.379417 TCTCCCCTTTTAAGCAGTAGTAGTAC 59.621 42.308 0.00 0.00 0.00 2.73
2466 2642 4.383861 TGGACTCCGCAGCAGCAG 62.384 66.667 0.82 0.00 42.27 4.24
2539 2715 4.993584 GTCTACACCATCACCATCATCATC 59.006 45.833 0.00 0.00 0.00 2.92
2540 2716 3.937778 ACACCATCACCATCATCATCA 57.062 42.857 0.00 0.00 0.00 3.07
2541 2717 3.816994 ACACCATCACCATCATCATCAG 58.183 45.455 0.00 0.00 0.00 2.90
2542 2718 3.457012 ACACCATCACCATCATCATCAGA 59.543 43.478 0.00 0.00 0.00 3.27
2543 2719 3.813724 CACCATCACCATCATCATCAGAC 59.186 47.826 0.00 0.00 0.00 3.51
2544 2720 3.457012 ACCATCACCATCATCATCAGACA 59.543 43.478 0.00 0.00 0.00 3.41
2545 2721 3.813724 CCATCACCATCATCATCAGACAC 59.186 47.826 0.00 0.00 0.00 3.67
2546 2722 3.548745 TCACCATCATCATCAGACACC 57.451 47.619 0.00 0.00 0.00 4.16
2547 2723 2.839425 TCACCATCATCATCAGACACCA 59.161 45.455 0.00 0.00 0.00 4.17
2548 2724 3.457012 TCACCATCATCATCAGACACCAT 59.543 43.478 0.00 0.00 0.00 3.55
2549 2725 4.655186 TCACCATCATCATCAGACACCATA 59.345 41.667 0.00 0.00 0.00 2.74
2550 2726 5.130809 TCACCATCATCATCAGACACCATAA 59.869 40.000 0.00 0.00 0.00 1.90
2551 2727 5.469084 CACCATCATCATCAGACACCATAAG 59.531 44.000 0.00 0.00 0.00 1.73
2552 2728 5.367644 ACCATCATCATCAGACACCATAAGA 59.632 40.000 0.00 0.00 0.00 2.10
2553 2729 6.126681 ACCATCATCATCAGACACCATAAGAA 60.127 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.232188 TCTACTCATGTTCGGTACCTCT 57.768 45.455 10.90 0.00 0.00 3.69
69 71 2.293677 AGCAAGGTGTCTCGTATATCCG 59.706 50.000 0.00 0.00 0.00 4.18
129 131 3.243839 GGAGCCTCTGAAGCAATCTAGAG 60.244 52.174 0.00 0.00 35.15 2.43
181 183 7.251321 AGTCCTAACTCTCTTCACATTCATT 57.749 36.000 0.00 0.00 0.00 2.57
265 267 4.308265 GTCTTGGGTCTTGTGAGAAGTAC 58.692 47.826 0.00 0.00 32.66 2.73
295 297 6.511929 CGAGTCATAGGTATGCCGATACTATG 60.512 46.154 0.00 0.00 40.50 2.23
348 350 0.989890 GTTCGTGAACCCTCGAATCG 59.010 55.000 0.00 0.00 45.79 3.34
359 362 3.813166 GAGTTTGGAAGATGGTTCGTGAA 59.187 43.478 0.00 0.00 0.00 3.18
384 387 7.855784 TGATCAGCTATAGTCCCAAAAGATA 57.144 36.000 0.84 0.00 0.00 1.98
440 444 7.816031 GGTTTTGATGAATCATGACAACAAGAT 59.184 33.333 12.33 0.00 36.25 2.40
495 499 5.147330 TGGTGGTCATGTAAGTAGTCAAG 57.853 43.478 0.00 0.00 0.00 3.02
496 500 5.487433 CATGGTGGTCATGTAAGTAGTCAA 58.513 41.667 0.00 0.00 46.11 3.18
497 501 5.084818 CATGGTGGTCATGTAAGTAGTCA 57.915 43.478 0.00 0.00 46.11 3.41
508 512 4.895668 AAAAAGCAATCATGGTGGTCAT 57.104 36.364 0.00 0.00 37.35 3.06
528 532 8.873215 TTTATTTACGCAATTGAGTGGAAAAA 57.127 26.923 23.09 15.64 35.62 1.94
532 536 9.729023 CATTATTTATTTACGCAATTGAGTGGA 57.271 29.630 23.09 12.39 0.00 4.02
533 537 8.967218 CCATTATTTATTTACGCAATTGAGTGG 58.033 33.333 23.09 8.54 0.00 4.00
534 538 9.515020 ACCATTATTTATTTACGCAATTGAGTG 57.485 29.630 23.09 8.00 0.00 3.51
535 539 9.515020 CACCATTATTTATTTACGCAATTGAGT 57.485 29.630 18.94 18.94 0.00 3.41
536 540 8.967218 CCACCATTATTTATTTACGCAATTGAG 58.033 33.333 10.34 8.94 0.00 3.02
537 541 8.470805 ACCACCATTATTTATTTACGCAATTGA 58.529 29.630 10.34 0.00 0.00 2.57
538 542 8.641499 ACCACCATTATTTATTTACGCAATTG 57.359 30.769 0.00 0.00 0.00 2.32
539 543 9.092876 CAACCACCATTATTTATTTACGCAATT 57.907 29.630 0.00 0.00 0.00 2.32
540 544 8.470805 TCAACCACCATTATTTATTTACGCAAT 58.529 29.630 0.00 0.00 0.00 3.56
541 545 7.827701 TCAACCACCATTATTTATTTACGCAA 58.172 30.769 0.00 0.00 0.00 4.85
542 546 7.392494 TCAACCACCATTATTTATTTACGCA 57.608 32.000 0.00 0.00 0.00 5.24
543 547 6.915843 CCTCAACCACCATTATTTATTTACGC 59.084 38.462 0.00 0.00 0.00 4.42
544 548 7.422399 CCCTCAACCACCATTATTTATTTACG 58.578 38.462 0.00 0.00 0.00 3.18
545 549 7.147811 TGCCCTCAACCACCATTATTTATTTAC 60.148 37.037 0.00 0.00 0.00 2.01
546 550 6.897966 TGCCCTCAACCACCATTATTTATTTA 59.102 34.615 0.00 0.00 0.00 1.40
547 551 5.723887 TGCCCTCAACCACCATTATTTATTT 59.276 36.000 0.00 0.00 0.00 1.40
548 552 5.276440 TGCCCTCAACCACCATTATTTATT 58.724 37.500 0.00 0.00 0.00 1.40
549 553 4.877773 TGCCCTCAACCACCATTATTTAT 58.122 39.130 0.00 0.00 0.00 1.40
550 554 4.323569 TGCCCTCAACCACCATTATTTA 57.676 40.909 0.00 0.00 0.00 1.40
551 555 3.182887 TGCCCTCAACCACCATTATTT 57.817 42.857 0.00 0.00 0.00 1.40
552 556 2.917713 TGCCCTCAACCACCATTATT 57.082 45.000 0.00 0.00 0.00 1.40
553 557 2.024080 ACATGCCCTCAACCACCATTAT 60.024 45.455 0.00 0.00 0.00 1.28
554 558 1.357420 ACATGCCCTCAACCACCATTA 59.643 47.619 0.00 0.00 0.00 1.90
555 559 0.114954 ACATGCCCTCAACCACCATT 59.885 50.000 0.00 0.00 0.00 3.16
556 560 0.998928 TACATGCCCTCAACCACCAT 59.001 50.000 0.00 0.00 0.00 3.55
557 561 0.774276 TTACATGCCCTCAACCACCA 59.226 50.000 0.00 0.00 0.00 4.17
558 562 1.544246 GTTTACATGCCCTCAACCACC 59.456 52.381 0.00 0.00 0.00 4.61
559 563 2.235016 TGTTTACATGCCCTCAACCAC 58.765 47.619 0.00 0.00 0.00 4.16
560 564 2.666272 TGTTTACATGCCCTCAACCA 57.334 45.000 0.00 0.00 0.00 3.67
561 565 3.508744 CATGTTTACATGCCCTCAACC 57.491 47.619 9.69 0.00 45.92 3.77
571 575 7.431376 CACTTCGAGTCGTATACATGTTTACAT 59.569 37.037 21.45 10.13 36.96 2.29
572 576 6.744082 CACTTCGAGTCGTATACATGTTTACA 59.256 38.462 21.45 9.67 0.00 2.41
573 577 6.963242 TCACTTCGAGTCGTATACATGTTTAC 59.037 38.462 13.12 14.42 0.00 2.01
574 578 7.075674 TCACTTCGAGTCGTATACATGTTTA 57.924 36.000 13.12 0.00 0.00 2.01
575 579 5.946298 TCACTTCGAGTCGTATACATGTTT 58.054 37.500 13.12 0.00 0.00 2.83
576 580 5.556355 TCACTTCGAGTCGTATACATGTT 57.444 39.130 13.12 0.00 0.00 2.71
577 581 5.296035 TGATCACTTCGAGTCGTATACATGT 59.704 40.000 13.12 2.69 0.00 3.21
578 582 5.748592 TGATCACTTCGAGTCGTATACATG 58.251 41.667 13.12 4.32 0.00 3.21
579 583 6.374578 CATGATCACTTCGAGTCGTATACAT 58.625 40.000 13.12 7.70 0.00 2.29
580 584 5.748592 CATGATCACTTCGAGTCGTATACA 58.251 41.667 13.12 5.82 0.00 2.29
581 585 4.613448 GCATGATCACTTCGAGTCGTATAC 59.387 45.833 13.12 0.00 0.00 1.47
582 586 4.320275 GGCATGATCACTTCGAGTCGTATA 60.320 45.833 13.12 0.00 0.00 1.47
583 587 3.551046 GGCATGATCACTTCGAGTCGTAT 60.551 47.826 13.12 0.00 0.00 3.06
584 588 2.223502 GGCATGATCACTTCGAGTCGTA 60.224 50.000 13.12 1.33 0.00 3.43
585 589 1.469940 GGCATGATCACTTCGAGTCGT 60.470 52.381 13.12 0.00 0.00 4.34
586 590 1.203928 GGCATGATCACTTCGAGTCG 58.796 55.000 6.09 6.09 0.00 4.18
587 591 2.299993 TGGCATGATCACTTCGAGTC 57.700 50.000 0.00 0.00 0.00 3.36
588 592 2.768253 TTGGCATGATCACTTCGAGT 57.232 45.000 0.00 0.00 0.00 4.18
589 593 2.223203 GCTTTGGCATGATCACTTCGAG 60.223 50.000 0.00 0.00 38.54 4.04
590 594 1.739466 GCTTTGGCATGATCACTTCGA 59.261 47.619 0.00 0.00 38.54 3.71
591 595 1.741706 AGCTTTGGCATGATCACTTCG 59.258 47.619 0.00 0.00 41.70 3.79
592 596 3.192001 TCAAGCTTTGGCATGATCACTTC 59.808 43.478 0.00 0.00 40.56 3.01
593 597 3.159472 TCAAGCTTTGGCATGATCACTT 58.841 40.909 0.00 0.00 40.56 3.16
594 598 2.799017 TCAAGCTTTGGCATGATCACT 58.201 42.857 0.00 0.00 40.56 3.41
600 604 3.067742 CCTAAGGATCAAGCTTTGGCATG 59.932 47.826 0.00 0.00 41.70 4.06
601 605 3.294214 CCTAAGGATCAAGCTTTGGCAT 58.706 45.455 0.00 0.00 41.70 4.40
602 606 2.041620 ACCTAAGGATCAAGCTTTGGCA 59.958 45.455 0.00 0.00 41.70 4.92
603 607 2.728007 ACCTAAGGATCAAGCTTTGGC 58.272 47.619 0.00 0.00 39.06 4.52
604 608 4.142600 CGAAACCTAAGGATCAAGCTTTGG 60.143 45.833 0.00 8.42 0.00 3.28
605 609 4.695455 TCGAAACCTAAGGATCAAGCTTTG 59.305 41.667 0.00 0.00 0.00 2.77
606 610 4.906618 TCGAAACCTAAGGATCAAGCTTT 58.093 39.130 0.00 0.00 0.00 3.51
607 611 4.508662 CTCGAAACCTAAGGATCAAGCTT 58.491 43.478 0.00 0.00 0.00 3.74
608 612 3.118592 CCTCGAAACCTAAGGATCAAGCT 60.119 47.826 0.00 0.00 31.44 3.74
609 613 3.198872 CCTCGAAACCTAAGGATCAAGC 58.801 50.000 0.00 0.00 31.44 4.01
610 614 3.432326 CCCCTCGAAACCTAAGGATCAAG 60.432 52.174 0.00 0.00 31.44 3.02
611 615 2.504175 CCCCTCGAAACCTAAGGATCAA 59.496 50.000 0.00 0.00 31.44 2.57
612 616 2.116238 CCCCTCGAAACCTAAGGATCA 58.884 52.381 0.00 0.00 31.44 2.92
613 617 2.102757 GACCCCTCGAAACCTAAGGATC 59.897 54.545 0.00 0.00 31.44 3.36
614 618 2.117051 GACCCCTCGAAACCTAAGGAT 58.883 52.381 0.00 0.00 31.44 3.24
615 619 1.203212 TGACCCCTCGAAACCTAAGGA 60.203 52.381 0.00 0.00 31.44 3.36
616 620 1.066358 GTGACCCCTCGAAACCTAAGG 60.066 57.143 0.00 0.00 0.00 2.69
617 621 1.403780 CGTGACCCCTCGAAACCTAAG 60.404 57.143 0.00 0.00 0.00 2.18
618 622 0.604578 CGTGACCCCTCGAAACCTAA 59.395 55.000 0.00 0.00 0.00 2.69
619 623 1.252904 CCGTGACCCCTCGAAACCTA 61.253 60.000 0.00 0.00 0.00 3.08
620 624 2.580601 CCGTGACCCCTCGAAACCT 61.581 63.158 0.00 0.00 0.00 3.50
621 625 2.047560 CCGTGACCCCTCGAAACC 60.048 66.667 0.00 0.00 0.00 3.27
622 626 1.373873 GTCCGTGACCCCTCGAAAC 60.374 63.158 0.00 0.00 0.00 2.78
623 627 2.576832 GGTCCGTGACCCCTCGAAA 61.577 63.158 10.92 0.00 46.19 3.46
624 628 2.993264 GGTCCGTGACCCCTCGAA 60.993 66.667 10.92 0.00 46.19 3.71
632 636 0.323629 TTTGGAGGATGGTCCGTGAC 59.676 55.000 0.00 0.00 42.75 3.67
633 637 0.323629 GTTTGGAGGATGGTCCGTGA 59.676 55.000 0.00 0.00 42.75 4.35
634 638 0.324943 AGTTTGGAGGATGGTCCGTG 59.675 55.000 0.00 0.00 42.75 4.94
635 639 0.613777 GAGTTTGGAGGATGGTCCGT 59.386 55.000 0.00 0.00 42.75 4.69
636 640 0.613260 TGAGTTTGGAGGATGGTCCG 59.387 55.000 0.00 0.00 42.75 4.79
637 641 2.224769 TGTTGAGTTTGGAGGATGGTCC 60.225 50.000 0.00 0.00 36.58 4.46
638 642 3.140325 TGTTGAGTTTGGAGGATGGTC 57.860 47.619 0.00 0.00 0.00 4.02
639 643 3.117512 AGTTGTTGAGTTTGGAGGATGGT 60.118 43.478 0.00 0.00 0.00 3.55
640 644 3.490348 AGTTGTTGAGTTTGGAGGATGG 58.510 45.455 0.00 0.00 0.00 3.51
641 645 5.520376 AAAGTTGTTGAGTTTGGAGGATG 57.480 39.130 0.00 0.00 29.74 3.51
642 646 5.163416 CCAAAAGTTGTTGAGTTTGGAGGAT 60.163 40.000 8.04 0.00 31.32 3.24
643 647 4.159506 CCAAAAGTTGTTGAGTTTGGAGGA 59.840 41.667 8.04 0.00 31.32 3.71
644 648 4.432712 CCAAAAGTTGTTGAGTTTGGAGG 58.567 43.478 8.04 0.00 31.32 4.30
645 649 4.159506 TCCCAAAAGTTGTTGAGTTTGGAG 59.840 41.667 14.11 6.05 31.32 3.86
646 650 4.081917 GTCCCAAAAGTTGTTGAGTTTGGA 60.082 41.667 14.11 0.00 31.32 3.53
647 651 4.081697 AGTCCCAAAAGTTGTTGAGTTTGG 60.082 41.667 6.98 6.98 31.32 3.28
648 652 5.072040 AGTCCCAAAAGTTGTTGAGTTTG 57.928 39.130 0.00 0.00 31.32 2.93
649 653 7.558444 TGTATAGTCCCAAAAGTTGTTGAGTTT 59.442 33.333 0.00 0.00 32.23 2.66
650 654 7.012989 GTGTATAGTCCCAAAAGTTGTTGAGTT 59.987 37.037 0.00 0.00 0.00 3.01
651 655 6.485648 GTGTATAGTCCCAAAAGTTGTTGAGT 59.514 38.462 0.00 0.00 0.00 3.41
652 656 6.710744 AGTGTATAGTCCCAAAAGTTGTTGAG 59.289 38.462 0.00 0.00 0.00 3.02
653 657 6.597562 AGTGTATAGTCCCAAAAGTTGTTGA 58.402 36.000 0.00 0.00 0.00 3.18
654 658 6.877611 AGTGTATAGTCCCAAAAGTTGTTG 57.122 37.500 0.00 0.00 0.00 3.33
655 659 9.886132 CTATAGTGTATAGTCCCAAAAGTTGTT 57.114 33.333 0.00 0.00 34.73 2.83
656 660 7.985752 GCTATAGTGTATAGTCCCAAAAGTTGT 59.014 37.037 0.84 0.00 40.19 3.32
657 661 8.204836 AGCTATAGTGTATAGTCCCAAAAGTTG 58.795 37.037 0.84 0.00 40.19 3.16
658 662 8.204836 CAGCTATAGTGTATAGTCCCAAAAGTT 58.795 37.037 0.84 0.00 40.19 2.66
659 663 7.563924 TCAGCTATAGTGTATAGTCCCAAAAGT 59.436 37.037 0.84 0.00 40.19 2.66
660 664 7.952671 TCAGCTATAGTGTATAGTCCCAAAAG 58.047 38.462 0.84 0.00 40.19 2.27
661 665 7.907841 TCAGCTATAGTGTATAGTCCCAAAA 57.092 36.000 0.84 0.00 40.19 2.44
662 666 7.094334 CGATCAGCTATAGTGTATAGTCCCAAA 60.094 40.741 0.84 0.00 40.19 3.28
663 667 6.374613 CGATCAGCTATAGTGTATAGTCCCAA 59.625 42.308 0.84 0.00 40.19 4.12
664 668 5.880887 CGATCAGCTATAGTGTATAGTCCCA 59.119 44.000 0.84 0.00 40.19 4.37
665 669 6.037391 GTCGATCAGCTATAGTGTATAGTCCC 59.963 46.154 0.84 0.00 40.19 4.46
666 670 6.594547 TGTCGATCAGCTATAGTGTATAGTCC 59.405 42.308 0.84 0.00 40.19 3.85
667 671 7.332430 AGTGTCGATCAGCTATAGTGTATAGTC 59.668 40.741 0.84 0.00 40.19 2.59
668 672 7.162761 AGTGTCGATCAGCTATAGTGTATAGT 58.837 38.462 0.84 0.00 40.19 2.12
669 673 7.603963 AGTGTCGATCAGCTATAGTGTATAG 57.396 40.000 0.84 0.00 40.83 1.31
670 674 7.981102 AAGTGTCGATCAGCTATAGTGTATA 57.019 36.000 0.84 0.00 0.00 1.47
671 675 6.885952 AAGTGTCGATCAGCTATAGTGTAT 57.114 37.500 0.84 0.00 0.00 2.29
672 676 6.317893 TCAAAGTGTCGATCAGCTATAGTGTA 59.682 38.462 0.84 0.00 0.00 2.90
673 677 5.125578 TCAAAGTGTCGATCAGCTATAGTGT 59.874 40.000 0.84 0.00 0.00 3.55
674 678 5.582550 TCAAAGTGTCGATCAGCTATAGTG 58.417 41.667 0.84 0.00 0.00 2.74
675 679 5.590663 TCTCAAAGTGTCGATCAGCTATAGT 59.409 40.000 0.84 0.00 0.00 2.12
676 680 6.066054 TCTCAAAGTGTCGATCAGCTATAG 57.934 41.667 0.00 0.00 0.00 1.31
677 681 6.451064 TTCTCAAAGTGTCGATCAGCTATA 57.549 37.500 0.00 0.00 0.00 1.31
678 682 4.991153 TCTCAAAGTGTCGATCAGCTAT 57.009 40.909 0.00 0.00 0.00 2.97
679 683 4.783764 TTCTCAAAGTGTCGATCAGCTA 57.216 40.909 0.00 0.00 0.00 3.32
680 684 3.667497 TTCTCAAAGTGTCGATCAGCT 57.333 42.857 0.00 0.00 0.00 4.24
681 685 4.935885 ATTTCTCAAAGTGTCGATCAGC 57.064 40.909 0.00 0.00 0.00 4.26
682 686 8.499162 ACTAAAATTTCTCAAAGTGTCGATCAG 58.501 33.333 0.00 0.00 0.00 2.90
683 687 8.378172 ACTAAAATTTCTCAAAGTGTCGATCA 57.622 30.769 0.00 0.00 0.00 2.92
684 688 7.958025 GGACTAAAATTTCTCAAAGTGTCGATC 59.042 37.037 0.00 0.00 0.00 3.69
685 689 7.094762 GGGACTAAAATTTCTCAAAGTGTCGAT 60.095 37.037 0.00 0.00 0.00 3.59
686 690 6.204108 GGGACTAAAATTTCTCAAAGTGTCGA 59.796 38.462 0.00 0.00 0.00 4.20
687 691 6.204882 AGGGACTAAAATTTCTCAAAGTGTCG 59.795 38.462 0.00 0.00 36.02 4.35
688 692 7.511959 AGGGACTAAAATTTCTCAAAGTGTC 57.488 36.000 0.00 0.00 36.02 3.67
689 693 7.898014 AAGGGACTAAAATTTCTCAAAGTGT 57.102 32.000 0.00 0.00 38.49 3.55
703 707 9.856162 ACAACAAGACTAAATAAAGGGACTAAA 57.144 29.630 0.00 0.00 38.49 1.85
704 708 9.498176 GACAACAAGACTAAATAAAGGGACTAA 57.502 33.333 0.00 0.00 38.49 2.24
705 709 8.653191 TGACAACAAGACTAAATAAAGGGACTA 58.347 33.333 0.00 0.00 38.49 2.59
707 711 7.739498 TGACAACAAGACTAAATAAAGGGAC 57.261 36.000 0.00 0.00 0.00 4.46
719 723 9.683069 GTTTTGATGATTTATGACAACAAGACT 57.317 29.630 0.00 0.00 34.10 3.24
720 724 8.915654 GGTTTTGATGATTTATGACAACAAGAC 58.084 33.333 0.00 0.00 35.17 3.01
721 725 8.087750 GGGTTTTGATGATTTATGACAACAAGA 58.912 33.333 0.00 0.00 32.37 3.02
722 726 7.871973 TGGGTTTTGATGATTTATGACAACAAG 59.128 33.333 0.00 0.00 32.37 3.16
723 727 7.655328 GTGGGTTTTGATGATTTATGACAACAA 59.345 33.333 0.00 0.00 0.00 2.83
724 728 7.015098 AGTGGGTTTTGATGATTTATGACAACA 59.985 33.333 0.00 0.00 0.00 3.33
725 729 7.378181 AGTGGGTTTTGATGATTTATGACAAC 58.622 34.615 0.00 0.00 0.00 3.32
726 730 7.537596 AGTGGGTTTTGATGATTTATGACAA 57.462 32.000 0.00 0.00 0.00 3.18
727 731 8.685427 CATAGTGGGTTTTGATGATTTATGACA 58.315 33.333 0.00 0.00 0.00 3.58
728 732 8.137437 CCATAGTGGGTTTTGATGATTTATGAC 58.863 37.037 0.00 0.00 32.67 3.06
729 733 8.236585 CCATAGTGGGTTTTGATGATTTATGA 57.763 34.615 0.00 0.00 32.67 2.15
746 750 2.452064 ATCACGGCCCCCATAGTGG 61.452 63.158 0.00 0.00 37.25 4.00
747 751 1.227943 CATCACGGCCCCCATAGTG 60.228 63.158 0.00 0.00 36.06 2.74
748 752 3.120086 GCATCACGGCCCCCATAGT 62.120 63.158 0.00 0.00 0.00 2.12
749 753 2.281761 GCATCACGGCCCCCATAG 60.282 66.667 0.00 0.00 0.00 2.23
750 754 3.093172 TGCATCACGGCCCCCATA 61.093 61.111 0.00 0.00 0.00 2.74
751 755 4.820744 GTGCATCACGGCCCCCAT 62.821 66.667 0.00 0.00 0.00 4.00
753 757 3.338275 TAAGTGCATCACGGCCCCC 62.338 63.158 0.00 0.00 39.64 5.40
754 758 2.112815 GTAAGTGCATCACGGCCCC 61.113 63.158 0.00 0.00 39.64 5.80
755 759 0.958382 TTGTAAGTGCATCACGGCCC 60.958 55.000 0.00 0.00 39.64 5.80
756 760 0.168128 GTTGTAAGTGCATCACGGCC 59.832 55.000 0.00 0.00 39.64 6.13
757 761 1.156736 AGTTGTAAGTGCATCACGGC 58.843 50.000 0.00 0.00 39.64 5.68
758 762 2.805671 TCAAGTTGTAAGTGCATCACGG 59.194 45.455 2.11 0.00 39.64 4.94
759 763 3.494626 AGTCAAGTTGTAAGTGCATCACG 59.505 43.478 2.11 0.00 39.64 4.35
760 764 5.696724 AGTAGTCAAGTTGTAAGTGCATCAC 59.303 40.000 2.11 0.00 34.10 3.06
761 765 5.853936 AGTAGTCAAGTTGTAAGTGCATCA 58.146 37.500 2.11 0.00 0.00 3.07
762 766 6.128526 GGAAGTAGTCAAGTTGTAAGTGCATC 60.129 42.308 2.11 0.00 0.00 3.91
763 767 5.701290 GGAAGTAGTCAAGTTGTAAGTGCAT 59.299 40.000 2.11 0.00 0.00 3.96
764 768 5.054477 GGAAGTAGTCAAGTTGTAAGTGCA 58.946 41.667 2.11 0.00 0.00 4.57
765 769 5.050295 GTGGAAGTAGTCAAGTTGTAAGTGC 60.050 44.000 2.11 0.00 0.00 4.40
766 770 5.175126 CGTGGAAGTAGTCAAGTTGTAAGTG 59.825 44.000 2.11 0.00 0.00 3.16
767 771 5.287226 CGTGGAAGTAGTCAAGTTGTAAGT 58.713 41.667 2.11 0.00 0.00 2.24
768 772 4.684703 CCGTGGAAGTAGTCAAGTTGTAAG 59.315 45.833 2.11 0.00 0.00 2.34
769 773 4.624015 CCGTGGAAGTAGTCAAGTTGTAA 58.376 43.478 2.11 0.00 0.00 2.41
770 774 3.553508 GCCGTGGAAGTAGTCAAGTTGTA 60.554 47.826 2.11 0.00 0.00 2.41
771 775 2.805657 GCCGTGGAAGTAGTCAAGTTGT 60.806 50.000 2.11 0.00 0.00 3.32
772 776 1.798813 GCCGTGGAAGTAGTCAAGTTG 59.201 52.381 0.00 0.00 0.00 3.16
773 777 1.270678 GGCCGTGGAAGTAGTCAAGTT 60.271 52.381 0.00 0.00 0.00 2.66
774 778 0.320697 GGCCGTGGAAGTAGTCAAGT 59.679 55.000 0.00 0.00 0.00 3.16
809 816 4.021104 GGTGGAAAAATCTTGCTTAGCCTT 60.021 41.667 0.29 0.00 0.00 4.35
810 817 3.511540 GGTGGAAAAATCTTGCTTAGCCT 59.488 43.478 0.29 0.00 0.00 4.58
811 818 3.258123 TGGTGGAAAAATCTTGCTTAGCC 59.742 43.478 0.29 0.00 0.00 3.93
812 819 4.519540 TGGTGGAAAAATCTTGCTTAGC 57.480 40.909 0.00 0.00 0.00 3.09
813 820 7.442062 ACAATTTGGTGGAAAAATCTTGCTTAG 59.558 33.333 0.78 0.00 0.00 2.18
814 821 7.226325 CACAATTTGGTGGAAAAATCTTGCTTA 59.774 33.333 0.78 0.00 35.13 3.09
815 822 6.038492 CACAATTTGGTGGAAAAATCTTGCTT 59.962 34.615 0.78 0.00 35.13 3.91
816 823 5.528320 CACAATTTGGTGGAAAAATCTTGCT 59.472 36.000 0.78 0.00 35.13 3.91
817 824 5.750650 CACAATTTGGTGGAAAAATCTTGC 58.249 37.500 0.78 0.00 35.13 4.01
818 825 5.296283 TGCACAATTTGGTGGAAAAATCTTG 59.704 36.000 0.78 0.00 36.11 3.02
819 826 5.435291 TGCACAATTTGGTGGAAAAATCTT 58.565 33.333 0.78 0.00 36.11 2.40
820 827 5.033589 TGCACAATTTGGTGGAAAAATCT 57.966 34.783 0.78 0.00 36.11 2.40
821 828 5.747951 TTGCACAATTTGGTGGAAAAATC 57.252 34.783 0.78 0.00 44.49 2.17
826 833 8.908786 TTATTTATTTGCACAATTTGGTGGAA 57.091 26.923 0.78 0.00 45.54 3.53
859 868 3.772387 TGGATGTTTACATGCCCTCAAA 58.228 40.909 11.16 0.00 43.00 2.69
872 881 6.469782 AGATAAATTTCGGCATGGATGTTT 57.530 33.333 0.00 0.00 0.00 2.83
891 910 7.395772 CAGATAGAGAGGTTTGGATGCTAGATA 59.604 40.741 0.00 0.00 0.00 1.98
905 924 6.013379 TGAACAGAACTTCAGATAGAGAGGT 58.987 40.000 0.00 0.00 0.00 3.85
937 956 2.279517 CTGACCGTCCGCATAGGC 60.280 66.667 0.00 0.00 40.77 3.93
938 957 2.417516 CCTGACCGTCCGCATAGG 59.582 66.667 0.00 0.00 42.97 2.57
939 958 2.125326 TCCCTGACCGTCCGCATAG 61.125 63.158 0.00 0.00 0.00 2.23
940 959 2.043752 TCCCTGACCGTCCGCATA 60.044 61.111 0.00 0.00 0.00 3.14
941 960 2.849096 TAGTCCCTGACCGTCCGCAT 62.849 60.000 0.00 0.00 32.18 4.73
942 961 3.572447 TAGTCCCTGACCGTCCGCA 62.572 63.158 0.00 0.00 32.18 5.69
943 962 2.753043 TAGTCCCTGACCGTCCGC 60.753 66.667 0.00 0.00 32.18 5.54
944 963 1.246056 TTGTAGTCCCTGACCGTCCG 61.246 60.000 0.00 0.00 32.18 4.79
948 967 2.140717 GTTTGTTGTAGTCCCTGACCG 58.859 52.381 0.00 0.00 32.18 4.79
950 969 3.808174 GTGAGTTTGTTGTAGTCCCTGAC 59.192 47.826 0.00 0.00 0.00 3.51
1102 1122 0.817634 TCTGACTTGTTTGGTGGGCG 60.818 55.000 0.00 0.00 0.00 6.13
1122 1142 1.544691 GTGCTTGACGGTTCTAGAGGA 59.455 52.381 0.00 0.00 0.00 3.71
1134 1154 5.008712 GCCTTGGGTATTTATAGTGCTTGAC 59.991 44.000 0.00 0.00 0.00 3.18
1193 1213 0.317160 GTGTGTCTCGTGGATGTGGA 59.683 55.000 0.00 0.00 0.00 4.02
1197 1217 1.422388 CTGTGTGTGTCTCGTGGATG 58.578 55.000 0.00 0.00 0.00 3.51
1198 1218 0.319900 GCTGTGTGTGTCTCGTGGAT 60.320 55.000 0.00 0.00 0.00 3.41
1199 1219 1.067416 GCTGTGTGTGTCTCGTGGA 59.933 57.895 0.00 0.00 0.00 4.02
1200 1220 1.227234 TGCTGTGTGTGTCTCGTGG 60.227 57.895 0.00 0.00 0.00 4.94
1202 1222 0.528466 CTGTGCTGTGTGTGTCTCGT 60.528 55.000 0.00 0.00 0.00 4.18
1203 1223 1.825285 GCTGTGCTGTGTGTGTCTCG 61.825 60.000 0.00 0.00 0.00 4.04
1204 1224 0.811219 TGCTGTGCTGTGTGTGTCTC 60.811 55.000 0.00 0.00 0.00 3.36
1205 1225 0.179037 ATGCTGTGCTGTGTGTGTCT 60.179 50.000 0.00 0.00 0.00 3.41
1224 1250 1.004679 GGTGTTCCCTTTACGCCGA 60.005 57.895 0.00 0.00 36.54 5.54
1239 1265 1.085091 GCTGAGACATCTTGCTGGTG 58.915 55.000 0.00 0.00 0.00 4.17
1242 1268 1.279152 CGAGCTGAGACATCTTGCTG 58.721 55.000 12.89 4.87 36.64 4.41
1243 1269 0.459934 GCGAGCTGAGACATCTTGCT 60.460 55.000 0.00 9.22 35.05 3.91
1282 1310 1.053264 AGGAGAAGGAGCATCGCCAT 61.053 55.000 0.00 0.00 39.01 4.40
1405 1433 1.374252 CGCCCTTCTGCACGTACTT 60.374 57.895 0.00 0.00 0.00 2.24
1581 1609 0.179124 CTAGCTCACCTCCGCAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
1622 1651 3.070476 TCATTCATGTGCAGGCTGTTA 57.930 42.857 17.16 2.72 0.00 2.41
1623 1652 1.913778 TCATTCATGTGCAGGCTGTT 58.086 45.000 17.16 0.00 0.00 3.16
1624 1653 1.542915 GTTCATTCATGTGCAGGCTGT 59.457 47.619 17.16 0.00 0.00 4.40
1625 1654 1.816835 AGTTCATTCATGTGCAGGCTG 59.183 47.619 10.94 10.94 0.00 4.85
1654 1683 0.912486 ACTCTGGTGGGGTAAGCATC 59.088 55.000 0.00 0.00 0.00 3.91
1680 1711 9.367444 CTACGTATTTCTCTTAGGTTTGAATGT 57.633 33.333 0.00 0.00 0.00 2.71
1699 1730 9.359653 ACTAATAAACCCAGTACATCTACGTAT 57.640 33.333 0.00 0.00 0.00 3.06
1703 1734 9.694137 GATGACTAATAAACCCAGTACATCTAC 57.306 37.037 0.00 0.00 31.46 2.59
1705 1736 7.287005 TCGATGACTAATAAACCCAGTACATCT 59.713 37.037 0.00 0.00 31.69 2.90
1706 1737 7.431249 TCGATGACTAATAAACCCAGTACATC 58.569 38.462 0.00 0.00 0.00 3.06
1707 1738 7.356089 TCGATGACTAATAAACCCAGTACAT 57.644 36.000 0.00 0.00 0.00 2.29
1709 1740 6.145696 GCATCGATGACTAATAAACCCAGTAC 59.854 42.308 29.20 0.48 0.00 2.73
1713 1744 4.385825 GGCATCGATGACTAATAAACCCA 58.614 43.478 29.20 0.00 31.49 4.51
1714 1745 3.432252 CGGCATCGATGACTAATAAACCC 59.568 47.826 29.20 14.35 39.00 4.11
1717 1748 4.443063 CGAACGGCATCGATGACTAATAAA 59.557 41.667 29.20 0.00 45.48 1.40
1721 1752 1.402613 TCGAACGGCATCGATGACTAA 59.597 47.619 29.20 6.69 46.12 2.24
1760 1795 5.777732 ACCCAAAACATAACCAGCTCAATTA 59.222 36.000 0.00 0.00 0.00 1.40
1767 1806 5.462530 AGTAAACCCAAAACATAACCAGC 57.537 39.130 0.00 0.00 0.00 4.85
1774 1814 9.185680 GATCCTGTAATAGTAAACCCAAAACAT 57.814 33.333 0.00 0.00 0.00 2.71
1788 1828 6.392625 TTCAGACCTTCGATCCTGTAATAG 57.607 41.667 0.00 0.00 0.00 1.73
1848 1888 2.456000 GCTAACTGCGCTGCTTACA 58.544 52.632 14.80 0.00 0.00 2.41
1867 1907 5.294552 AGGACGTCTTATTTATTTCAGCAGC 59.705 40.000 16.46 0.00 0.00 5.25
1874 1914 7.166167 AGTTGACCAGGACGTCTTATTTATTT 58.834 34.615 16.46 0.00 33.70 1.40
1900 1940 1.244816 CTCCGGCATCGTCACCTATA 58.755 55.000 0.00 0.00 33.95 1.31
1960 2001 6.144886 TGCAACGTAGTCAAAGTACAATACTG 59.855 38.462 0.00 0.00 45.00 2.74
2076 2222 5.466058 CAGTCATCCAGAATATCTTCACTGC 59.534 44.000 0.00 0.00 33.56 4.40
2117 2264 6.774354 AATTGTTTTGATGAATCTGCACAC 57.226 33.333 0.00 0.00 0.00 3.82
2166 2313 2.886523 GACTTGCATATATGGCCTTGCA 59.113 45.455 14.51 8.97 42.90 4.08
2167 2314 2.229784 GGACTTGCATATATGGCCTTGC 59.770 50.000 14.51 6.28 35.67 4.01
2171 2318 4.037208 GCATATGGACTTGCATATATGGCC 59.963 45.833 14.51 0.00 38.72 5.36
2172 2319 4.641541 TGCATATGGACTTGCATATATGGC 59.358 41.667 14.51 7.40 43.54 4.40
2188 2336 6.693315 TGCATCTATTCATCCATGCATATG 57.307 37.500 0.00 0.19 45.19 1.78
2198 2346 3.474600 AGGCTGTGTGCATCTATTCATC 58.525 45.455 0.00 0.00 45.15 2.92
2200 2348 3.452264 AGTAGGCTGTGTGCATCTATTCA 59.548 43.478 0.00 0.00 45.15 2.57
2267 2422 4.935352 TTGCTAGTGCCATTTTGTCTTT 57.065 36.364 0.00 0.00 38.71 2.52
2307 2479 8.515695 TGCTAAGATGTACTACTACTGCTTAA 57.484 34.615 0.00 0.00 0.00 1.85
2308 2480 8.515695 TTGCTAAGATGTACTACTACTGCTTA 57.484 34.615 0.00 0.00 0.00 3.09
2309 2481 7.122948 ACTTGCTAAGATGTACTACTACTGCTT 59.877 37.037 0.00 0.00 0.00 3.91
2310 2482 6.603997 ACTTGCTAAGATGTACTACTACTGCT 59.396 38.462 0.00 0.00 0.00 4.24
2311 2483 6.797454 ACTTGCTAAGATGTACTACTACTGC 58.203 40.000 0.00 0.86 0.00 4.40
2323 2495 9.708222 GTTGTGATGTAATTACTTGCTAAGATG 57.292 33.333 16.33 0.00 33.38 2.90
2466 2642 2.563179 TCCTAGAGAGGTTTGTGAGTGC 59.437 50.000 0.00 0.00 44.19 4.40
2467 2643 3.829601 AGTCCTAGAGAGGTTTGTGAGTG 59.170 47.826 0.00 0.00 44.19 3.51
2468 2644 4.120946 AGTCCTAGAGAGGTTTGTGAGT 57.879 45.455 0.00 0.00 44.19 3.41
2525 2701 3.457012 TGGTGTCTGATGATGATGGTGAT 59.543 43.478 0.00 0.00 0.00 3.06
2539 2715 4.556233 TCGTGAGTTTCTTATGGTGTCTG 58.444 43.478 0.00 0.00 0.00 3.51
2540 2716 4.523173 TCTCGTGAGTTTCTTATGGTGTCT 59.477 41.667 0.00 0.00 0.00 3.41
2541 2717 4.806330 TCTCGTGAGTTTCTTATGGTGTC 58.194 43.478 0.00 0.00 0.00 3.67
2542 2718 4.866508 TCTCGTGAGTTTCTTATGGTGT 57.133 40.909 0.00 0.00 0.00 4.16
2543 2719 5.230942 AGTTCTCGTGAGTTTCTTATGGTG 58.769 41.667 0.00 0.00 0.00 4.17
2544 2720 5.470047 AGTTCTCGTGAGTTTCTTATGGT 57.530 39.130 0.00 0.00 0.00 3.55
2545 2721 5.120830 CCAAGTTCTCGTGAGTTTCTTATGG 59.879 44.000 0.00 0.00 0.00 2.74
2546 2722 5.926542 TCCAAGTTCTCGTGAGTTTCTTATG 59.073 40.000 0.00 0.00 0.00 1.90
2547 2723 6.097915 TCCAAGTTCTCGTGAGTTTCTTAT 57.902 37.500 0.00 0.00 0.00 1.73
2548 2724 5.509163 CCTCCAAGTTCTCGTGAGTTTCTTA 60.509 44.000 0.00 0.00 0.00 2.10
2549 2725 4.372656 CTCCAAGTTCTCGTGAGTTTCTT 58.627 43.478 0.00 0.00 0.00 2.52
2550 2726 3.243907 CCTCCAAGTTCTCGTGAGTTTCT 60.244 47.826 0.00 0.00 0.00 2.52
2551 2727 3.060602 CCTCCAAGTTCTCGTGAGTTTC 58.939 50.000 0.00 0.00 0.00 2.78
2552 2728 2.434702 ACCTCCAAGTTCTCGTGAGTTT 59.565 45.455 0.00 0.00 0.00 2.66
2553 2729 2.040178 ACCTCCAAGTTCTCGTGAGTT 58.960 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.