Multiple sequence alignment - TraesCS1D01G158200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G158200 chr1D 100.000 6121 0 0 1 6121 223160145 223166265 0.000000e+00 11304.0
1 TraesCS1D01G158200 chr1D 86.427 1142 120 18 2679 3815 261723255 261724366 0.000000e+00 1218.0
2 TraesCS1D01G158200 chr1D 85.415 1001 124 13 2191 3172 226943122 226944119 0.000000e+00 1020.0
3 TraesCS1D01G158200 chr1D 87.612 896 82 18 4149 5023 226945054 226945941 0.000000e+00 1013.0
4 TraesCS1D01G158200 chr1D 85.348 976 116 17 2191 3143 227373575 227374546 0.000000e+00 985.0
5 TraesCS1D01G158200 chr1D 85.636 912 77 25 4146 5023 227375619 227376510 0.000000e+00 909.0
6 TraesCS1D01G158200 chr1D 88.303 778 62 18 4271 5023 226827579 226828352 0.000000e+00 905.0
7 TraesCS1D01G158200 chr1D 83.383 1005 117 17 2188 3167 226825343 226826322 0.000000e+00 885.0
8 TraesCS1D01G158200 chr1D 84.658 906 99 20 3313 4194 227648728 227649617 0.000000e+00 867.0
9 TraesCS1D01G158200 chr1D 82.637 933 107 31 3976 4898 226468911 226469798 0.000000e+00 774.0
10 TraesCS1D01G158200 chr1D 87.319 623 66 10 2557 3172 208416420 208415804 0.000000e+00 701.0
11 TraesCS1D01G158200 chr1D 83.444 755 97 14 3313 4057 226826451 226827187 0.000000e+00 676.0
12 TraesCS1D01G158200 chr1D 86.400 625 71 9 2557 3172 227647998 227648617 0.000000e+00 671.0
13 TraesCS1D01G158200 chr1D 84.397 705 82 8 3313 4016 227374866 227375543 0.000000e+00 667.0
14 TraesCS1D01G158200 chr1D 81.535 834 119 12 5315 6119 375983295 375982468 0.000000e+00 654.0
15 TraesCS1D01G158200 chr1D 82.746 794 76 28 3905 4683 261724367 261725114 0.000000e+00 651.0
16 TraesCS1D01G158200 chr1D 84.203 690 71 12 4145 4816 227649623 227650292 2.410000e-178 636.0
17 TraesCS1D01G158200 chr1D 86.133 375 42 7 2191 2557 227647079 227647451 4.450000e-106 396.0
18 TraesCS1D01G158200 chr1D 96.748 123 3 1 1846 1967 254483944 254483822 2.890000e-48 204.0
19 TraesCS1D01G158200 chr1D 81.203 266 35 10 1141 1404 226824194 226824446 3.740000e-47 200.0
20 TraesCS1D01G158200 chr1D 85.638 188 12 9 4851 5023 227650292 227650479 3.770000e-42 183.0
21 TraesCS1D01G158200 chr1D 77.816 293 42 17 1524 1812 208417852 208417579 6.350000e-35 159.0
22 TraesCS1D01G158200 chr1B 92.975 4413 201 42 775 5135 322472129 322476484 0.000000e+00 6331.0
23 TraesCS1D01G158200 chr1B 85.338 1139 133 16 2679 3813 350443391 350442283 0.000000e+00 1147.0
24 TraesCS1D01G158200 chr1B 85.956 1004 117 13 2191 3172 327227633 327228634 0.000000e+00 1051.0
25 TraesCS1D01G158200 chr1B 85.019 1048 117 23 3976 5017 350442224 350441211 0.000000e+00 1029.0
26 TraesCS1D01G158200 chr1B 88.586 806 83 5 5315 6120 322477152 322477948 0.000000e+00 970.0
27 TraesCS1D01G158200 chr1B 86.674 893 82 24 4149 5023 326914147 326915020 0.000000e+00 955.0
28 TraesCS1D01G158200 chr1B 85.510 911 79 29 4146 5023 327229594 327230484 0.000000e+00 902.0
29 TraesCS1D01G158200 chr1B 84.513 749 92 11 3313 4057 327228833 327229561 0.000000e+00 719.0
30 TraesCS1D01G158200 chr1B 85.514 642 76 13 2191 2819 326912206 326912843 0.000000e+00 654.0
31 TraesCS1D01G158200 chr1B 85.390 616 72 13 2557 3167 327340953 327341555 1.870000e-174 623.0
32 TraesCS1D01G158200 chr1B 79.160 667 96 30 4286 4924 627783272 627783923 7.340000e-114 422.0
33 TraesCS1D01G158200 chr1B 86.667 375 41 6 2191 2557 327339349 327339722 2.050000e-109 407.0
34 TraesCS1D01G158200 chr1B 87.633 283 33 2 225 507 322426033 322426313 1.650000e-85 327.0
35 TraesCS1D01G158200 chr1B 75.256 489 93 20 25 502 14812157 14812628 2.240000e-49 207.0
36 TraesCS1D01G158200 chr1B 96.721 122 3 1 1847 1967 247484889 247484768 1.040000e-47 202.0
37 TraesCS1D01G158200 chr1B 96.078 51 2 0 2078 2128 350443851 350443801 3.930000e-12 84.2
38 TraesCS1D01G158200 chr1B 87.324 71 7 2 2129 2198 354222816 354222747 5.090000e-11 80.5
39 TraesCS1D01G158200 chr1B 91.892 37 3 0 5281 5317 322477105 322477141 1.100000e-02 52.8
40 TraesCS1D01G158200 chr1A 92.854 4198 173 56 877 5023 290123164 290127285 0.000000e+00 5973.0
41 TraesCS1D01G158200 chr1A 84.164 1124 114 34 3905 5020 338594161 338593094 0.000000e+00 1031.0
42 TraesCS1D01G158200 chr1A 83.968 998 135 19 2191 3172 294039438 294040426 0.000000e+00 933.0
43 TraesCS1D01G158200 chr1A 82.441 934 107 34 3976 4898 293737305 293738192 0.000000e+00 763.0
44 TraesCS1D01G158200 chr1A 84.232 742 92 12 3322 4059 294040637 294041357 0.000000e+00 699.0
45 TraesCS1D01G158200 chr1A 80.044 907 138 27 5252 6121 50324947 50324047 3.110000e-177 632.0
46 TraesCS1D01G158200 chr1A 86.528 527 69 2 3290 3815 338594687 338594162 4.110000e-161 579.0
47 TraesCS1D01G158200 chr1A 81.710 503 79 9 16 507 107469202 107468702 2.050000e-109 407.0
48 TraesCS1D01G158200 chr1A 94.444 36 1 1 2167 2202 2665743 2665709 3.000000e-03 54.7
49 TraesCS1D01G158200 chr7D 81.498 908 109 21 5259 6121 249440653 249441546 0.000000e+00 691.0
50 TraesCS1D01G158200 chr7D 82.000 600 80 5 5314 5886 112417389 112417987 9.220000e-133 484.0
51 TraesCS1D01G158200 chr7D 76.136 528 101 17 5 514 94667150 94667670 2.830000e-63 254.0
52 TraesCS1D01G158200 chr7D 77.684 354 65 12 159 507 4874385 4874729 2.890000e-48 204.0
53 TraesCS1D01G158200 chr7D 86.301 73 4 4 2127 2194 312564524 312564453 2.370000e-09 75.0
54 TraesCS1D01G158200 chr7A 82.156 835 108 16 5314 6121 332397706 332396886 0.000000e+00 678.0
55 TraesCS1D01G158200 chr7A 83.919 541 86 1 5581 6121 37830052 37830591 3.270000e-142 516.0
56 TraesCS1D01G158200 chr7A 80.571 736 86 22 5357 6063 109227009 109226302 1.180000e-141 514.0
57 TraesCS1D01G158200 chr7A 79.627 643 108 16 5335 5957 547182825 547183464 2.030000e-119 440.0
58 TraesCS1D01G158200 chr7B 82.230 816 103 14 5331 6121 255036955 255036157 0.000000e+00 665.0
59 TraesCS1D01G158200 chr7B 84.191 544 77 5 5582 6121 399873827 399873289 2.530000e-143 520.0
60 TraesCS1D01G158200 chr3D 82.025 790 109 14 5358 6118 536896500 536895715 5.170000e-180 641.0
61 TraesCS1D01G158200 chr3D 78.216 1065 118 66 3905 4924 532870668 532871663 1.480000e-160 577.0
62 TraesCS1D01G158200 chr2D 81.635 795 118 12 5354 6121 555310894 555311687 8.660000e-178 634.0
63 TraesCS1D01G158200 chr2D 82.733 666 93 11 5468 6112 593230339 593229675 1.910000e-159 573.0
64 TraesCS1D01G158200 chr2D 81.942 659 91 14 5472 6108 73124396 73123744 3.250000e-147 532.0
65 TraesCS1D01G158200 chr2D 79.602 402 63 14 67 456 396426717 396426323 2.810000e-68 270.0
66 TraesCS1D01G158200 chr2D 96.748 123 3 1 1846 1967 643860318 643860196 2.890000e-48 204.0
67 TraesCS1D01G158200 chr2D 80.682 264 46 3 123 383 194139844 194139583 3.740000e-47 200.0
68 TraesCS1D01G158200 chr3B 85.821 536 73 3 5580 6115 651532409 651532941 3.200000e-157 566.0
69 TraesCS1D01G158200 chr3B 89.831 59 4 2 2135 2191 177068011 177068069 2.370000e-09 75.0
70 TraesCS1D01G158200 chr5A 85.316 538 71 6 5581 6117 379350885 379351415 3.230000e-152 549.0
71 TraesCS1D01G158200 chr4D 85.185 513 67 6 5612 6121 404680192 404680698 9.090000e-143 518.0
72 TraesCS1D01G158200 chr2A 80.632 475 80 11 38 508 114841070 114841536 2.100000e-94 357.0
73 TraesCS1D01G158200 chr2A 96.032 126 4 1 1846 1970 588082770 588082645 2.890000e-48 204.0
74 TraesCS1D01G158200 chr2A 74.500 400 64 16 16 406 4123084 4123454 8.270000e-29 139.0
75 TraesCS1D01G158200 chrUn 82.230 287 51 0 140 426 62957188 62957474 1.320000e-61 248.0
76 TraesCS1D01G158200 chr3A 97.561 123 2 1 1846 1967 393236362 393236484 6.220000e-50 209.0
77 TraesCS1D01G158200 chr3A 95.238 63 3 0 2129 2191 41603606 41603668 3.900000e-17 100.0
78 TraesCS1D01G158200 chr6D 96.748 123 3 1 1846 1967 431396931 431397053 2.890000e-48 204.0
79 TraesCS1D01G158200 chr6A 96.748 123 3 1 1846 1967 192823198 192823076 2.890000e-48 204.0
80 TraesCS1D01G158200 chr5D 77.745 337 65 6 67 398 362668474 362668143 1.350000e-46 198.0
81 TraesCS1D01G158200 chr6B 85.897 78 9 2 2124 2200 25612787 25612711 1.410000e-11 82.4
82 TraesCS1D01G158200 chr4B 94.231 52 2 1 2124 2175 22844126 22844076 1.830000e-10 78.7
83 TraesCS1D01G158200 chr5B 86.667 75 2 6 2123 2195 401008076 401008144 6.580000e-10 76.8
84 TraesCS1D01G158200 chr4A 78.947 95 20 0 414 508 450335250 450335344 1.420000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G158200 chr1D 223160145 223166265 6120 False 11304.000000 11304 100.000000 1 6121 1 chr1D.!!$F1 6120
1 TraesCS1D01G158200 chr1D 226943122 226945941 2819 False 1016.500000 1020 86.513500 2191 5023 2 chr1D.!!$F4 2832
2 TraesCS1D01G158200 chr1D 261723255 261725114 1859 False 934.500000 1218 84.586500 2679 4683 2 chr1D.!!$F7 2004
3 TraesCS1D01G158200 chr1D 227373575 227376510 2935 False 853.666667 985 85.127000 2191 5023 3 chr1D.!!$F5 2832
4 TraesCS1D01G158200 chr1D 226468911 226469798 887 False 774.000000 774 82.637000 3976 4898 1 chr1D.!!$F2 922
5 TraesCS1D01G158200 chr1D 226824194 226828352 4158 False 666.500000 905 84.083250 1141 5023 4 chr1D.!!$F3 3882
6 TraesCS1D01G158200 chr1D 375982468 375983295 827 True 654.000000 654 81.535000 5315 6119 1 chr1D.!!$R2 804
7 TraesCS1D01G158200 chr1D 227647079 227650479 3400 False 550.600000 867 85.406400 2191 5023 5 chr1D.!!$F6 2832
8 TraesCS1D01G158200 chr1D 208415804 208417852 2048 True 430.000000 701 82.567500 1524 3172 2 chr1D.!!$R3 1648
9 TraesCS1D01G158200 chr1B 322472129 322477948 5819 False 2451.266667 6331 91.151000 775 6120 3 chr1B.!!$F4 5345
10 TraesCS1D01G158200 chr1B 327227633 327230484 2851 False 890.666667 1051 85.326333 2191 5023 3 chr1B.!!$F6 2832
11 TraesCS1D01G158200 chr1B 326912206 326915020 2814 False 804.500000 955 86.094000 2191 5023 2 chr1B.!!$F5 2832
12 TraesCS1D01G158200 chr1B 350441211 350443851 2640 True 753.400000 1147 88.811667 2078 5017 3 chr1B.!!$R3 2939
13 TraesCS1D01G158200 chr1B 327339349 327341555 2206 False 515.000000 623 86.028500 2191 3167 2 chr1B.!!$F7 976
14 TraesCS1D01G158200 chr1B 627783272 627783923 651 False 422.000000 422 79.160000 4286 4924 1 chr1B.!!$F3 638
15 TraesCS1D01G158200 chr1A 290123164 290127285 4121 False 5973.000000 5973 92.854000 877 5023 1 chr1A.!!$F1 4146
16 TraesCS1D01G158200 chr1A 294039438 294041357 1919 False 816.000000 933 84.100000 2191 4059 2 chr1A.!!$F3 1868
17 TraesCS1D01G158200 chr1A 338593094 338594687 1593 True 805.000000 1031 85.346000 3290 5020 2 chr1A.!!$R4 1730
18 TraesCS1D01G158200 chr1A 293737305 293738192 887 False 763.000000 763 82.441000 3976 4898 1 chr1A.!!$F2 922
19 TraesCS1D01G158200 chr1A 50324047 50324947 900 True 632.000000 632 80.044000 5252 6121 1 chr1A.!!$R2 869
20 TraesCS1D01G158200 chr1A 107468702 107469202 500 True 407.000000 407 81.710000 16 507 1 chr1A.!!$R3 491
21 TraesCS1D01G158200 chr7D 249440653 249441546 893 False 691.000000 691 81.498000 5259 6121 1 chr7D.!!$F4 862
22 TraesCS1D01G158200 chr7D 112417389 112417987 598 False 484.000000 484 82.000000 5314 5886 1 chr7D.!!$F3 572
23 TraesCS1D01G158200 chr7D 94667150 94667670 520 False 254.000000 254 76.136000 5 514 1 chr7D.!!$F2 509
24 TraesCS1D01G158200 chr7A 332396886 332397706 820 True 678.000000 678 82.156000 5314 6121 1 chr7A.!!$R2 807
25 TraesCS1D01G158200 chr7A 37830052 37830591 539 False 516.000000 516 83.919000 5581 6121 1 chr7A.!!$F1 540
26 TraesCS1D01G158200 chr7A 109226302 109227009 707 True 514.000000 514 80.571000 5357 6063 1 chr7A.!!$R1 706
27 TraesCS1D01G158200 chr7A 547182825 547183464 639 False 440.000000 440 79.627000 5335 5957 1 chr7A.!!$F2 622
28 TraesCS1D01G158200 chr7B 255036157 255036955 798 True 665.000000 665 82.230000 5331 6121 1 chr7B.!!$R1 790
29 TraesCS1D01G158200 chr7B 399873289 399873827 538 True 520.000000 520 84.191000 5582 6121 1 chr7B.!!$R2 539
30 TraesCS1D01G158200 chr3D 536895715 536896500 785 True 641.000000 641 82.025000 5358 6118 1 chr3D.!!$R1 760
31 TraesCS1D01G158200 chr3D 532870668 532871663 995 False 577.000000 577 78.216000 3905 4924 1 chr3D.!!$F1 1019
32 TraesCS1D01G158200 chr2D 555310894 555311687 793 False 634.000000 634 81.635000 5354 6121 1 chr2D.!!$F1 767
33 TraesCS1D01G158200 chr2D 593229675 593230339 664 True 573.000000 573 82.733000 5468 6112 1 chr2D.!!$R4 644
34 TraesCS1D01G158200 chr2D 73123744 73124396 652 True 532.000000 532 81.942000 5472 6108 1 chr2D.!!$R1 636
35 TraesCS1D01G158200 chr3B 651532409 651532941 532 False 566.000000 566 85.821000 5580 6115 1 chr3B.!!$F2 535
36 TraesCS1D01G158200 chr5A 379350885 379351415 530 False 549.000000 549 85.316000 5581 6117 1 chr5A.!!$F1 536
37 TraesCS1D01G158200 chr4D 404680192 404680698 506 False 518.000000 518 85.185000 5612 6121 1 chr4D.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 308 0.035820 GGCATTGTCAAGGTACCGGA 60.036 55.000 9.46 5.69 0.00 5.14 F
726 740 0.105039 GCACGCAGAGCCTAATAGGT 59.895 55.000 8.28 0.00 38.43 3.08 F
923 937 0.739813 GGAATACGCCGAGTGCTGTT 60.740 55.000 0.00 0.00 38.05 3.16 F
1439 1514 0.800012 TGATTTTTCTACGGCGTGGC 59.200 50.000 24.86 6.13 0.00 5.01 F
2411 2850 1.839424 GGAAAGACCCATGTTCCAGG 58.161 55.000 7.07 0.00 40.53 4.45 F
3436 5468 2.879646 AGAATACCTACTCGAAGGAGCG 59.120 50.000 10.18 0.00 44.48 5.03 F
5057 7532 2.035961 TGTTAAGTCAGCTTGTCTCGCT 59.964 45.455 0.00 0.00 38.49 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1164 1.667154 CGACTCCCATGAGGAAGCGA 61.667 60.000 13.99 0.00 46.94 4.93 R
2333 2772 0.919710 GGGTTTCCCTAGGAGTGCAT 59.080 55.000 11.48 0.00 41.34 3.96 R
2350 2789 1.173913 GAATCCGGAACAACTTGGGG 58.826 55.000 9.01 0.00 0.00 4.96 R
3376 5408 3.181513 GGTAGCTGCTTTTAGGTAAACGC 60.182 47.826 7.79 4.45 39.84 4.84 R
4290 6677 2.036556 GACACAACTTCGTGGCATTG 57.963 50.000 0.00 0.00 44.86 2.82 R
5061 7536 0.104120 TCGGCTGAATACACCATCCG 59.896 55.000 0.00 0.00 37.00 4.18 R
5860 8869 0.762461 CTCCTCTTGCCCCCTCTAGG 60.762 65.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.597217 CTTCCCAAAGCGGTGGCA 60.597 61.111 3.31 0.00 43.41 4.92
65 70 1.739562 GAGGCAGAGGTGAACGCAG 60.740 63.158 0.00 0.00 0.00 5.18
90 95 1.735571 GTTGTCCGACGCAAATATGGT 59.264 47.619 0.00 0.00 0.00 3.55
98 103 1.586042 GCAAATATGGTGCGGCGTG 60.586 57.895 9.37 0.00 31.20 5.34
120 125 4.093952 CCGTGCAAGGCAGCGAAG 62.094 66.667 5.51 0.00 40.08 3.79
135 142 4.314440 AAGCGGAGACTGCGGCAA 62.314 61.111 18.44 0.00 36.67 4.52
155 162 2.029073 CTCGCTGTGGTGGACGTT 59.971 61.111 0.00 0.00 0.00 3.99
157 164 2.279851 CGCTGTGGTGGACGTTGA 60.280 61.111 0.00 0.00 0.00 3.18
245 255 3.532155 GATGTCGCCGGCTCCTCT 61.532 66.667 26.68 4.84 0.00 3.69
256 266 0.755686 GGCTCCTCTCATGACGGATT 59.244 55.000 8.94 0.00 0.00 3.01
263 273 5.079643 TCCTCTCATGACGGATTCATCATA 58.920 41.667 5.13 0.00 43.68 2.15
283 293 2.298158 GATCTCACGTCCACCGGCAT 62.298 60.000 0.00 0.00 42.24 4.40
284 294 1.899437 ATCTCACGTCCACCGGCATT 61.899 55.000 0.00 0.00 42.24 3.56
289 299 1.963855 CGTCCACCGGCATTGTCAA 60.964 57.895 0.00 0.00 0.00 3.18
293 303 0.322098 CCACCGGCATTGTCAAGGTA 60.322 55.000 0.00 0.00 33.30 3.08
298 308 0.035820 GGCATTGTCAAGGTACCGGA 60.036 55.000 9.46 5.69 0.00 5.14
302 312 2.005370 TTGTCAAGGTACCGGACTCT 57.995 50.000 28.47 0.00 32.84 3.24
320 330 1.914108 TCTGACGAGGAAGAGTAGGGA 59.086 52.381 0.00 0.00 0.00 4.20
329 339 2.969262 GGAAGAGTAGGGAATGGGAGAG 59.031 54.545 0.00 0.00 0.00 3.20
333 346 1.459539 TAGGGAATGGGAGAGGGCG 60.460 63.158 0.00 0.00 0.00 6.13
354 367 1.676384 GCCTTGAGTCCTGTGAGCT 59.324 57.895 0.00 0.00 0.00 4.09
365 378 0.249447 CTGTGAGCTGGTTCGTGTCA 60.249 55.000 0.00 0.00 0.00 3.58
368 381 0.529773 TGAGCTGGTTCGTGTCACAC 60.530 55.000 0.00 0.00 0.00 3.82
386 399 1.400846 CACGTCATACTGTACCTCGCT 59.599 52.381 0.00 0.00 0.00 4.93
388 401 1.669265 CGTCATACTGTACCTCGCTGA 59.331 52.381 0.00 0.00 0.00 4.26
389 402 2.290916 CGTCATACTGTACCTCGCTGAT 59.709 50.000 0.00 0.00 0.00 2.90
394 407 0.817654 CTGTACCTCGCTGATGACCA 59.182 55.000 0.00 0.00 0.00 4.02
406 419 1.347707 TGATGACCAGACCAACACTCC 59.652 52.381 0.00 0.00 0.00 3.85
439 452 2.510411 CCGCTGGATATGGGCACA 59.490 61.111 0.00 0.00 0.00 4.57
440 453 1.152984 CCGCTGGATATGGGCACAA 60.153 57.895 0.00 0.00 0.00 3.33
442 455 1.775039 CGCTGGATATGGGCACAACG 61.775 60.000 0.00 0.00 0.00 4.10
448 461 0.908910 ATATGGGCACAACGGAGTCA 59.091 50.000 0.00 0.00 45.00 3.41
450 463 2.358737 GGGCACAACGGAGTCAGG 60.359 66.667 0.00 0.00 45.00 3.86
459 472 3.071206 GGAGTCAGGCGAGCTCCA 61.071 66.667 8.47 0.00 45.93 3.86
464 477 0.179124 GTCAGGCGAGCTCCACTTAG 60.179 60.000 8.47 0.00 0.00 2.18
466 479 0.749649 CAGGCGAGCTCCACTTAGAT 59.250 55.000 8.47 0.00 0.00 1.98
470 483 3.006323 AGGCGAGCTCCACTTAGATTATG 59.994 47.826 8.47 0.00 0.00 1.90
471 484 3.243907 GGCGAGCTCCACTTAGATTATGT 60.244 47.826 8.47 0.00 0.00 2.29
529 543 4.797800 TTTTTGCGGATCATGGATTTGA 57.202 36.364 0.00 0.00 0.00 2.69
530 544 4.374843 TTTTGCGGATCATGGATTTGAG 57.625 40.909 0.00 0.00 0.00 3.02
531 545 3.280197 TTGCGGATCATGGATTTGAGA 57.720 42.857 0.00 0.00 0.00 3.27
532 546 3.497103 TGCGGATCATGGATTTGAGAT 57.503 42.857 0.00 0.00 0.00 2.75
533 547 3.824133 TGCGGATCATGGATTTGAGATT 58.176 40.909 0.00 0.00 0.00 2.40
534 548 4.209538 TGCGGATCATGGATTTGAGATTT 58.790 39.130 0.00 0.00 0.00 2.17
535 549 4.276678 TGCGGATCATGGATTTGAGATTTC 59.723 41.667 0.00 0.00 0.00 2.17
536 550 4.518211 GCGGATCATGGATTTGAGATTTCT 59.482 41.667 0.00 0.00 0.00 2.52
537 551 5.702670 GCGGATCATGGATTTGAGATTTCTA 59.297 40.000 0.00 0.00 0.00 2.10
538 552 6.205464 GCGGATCATGGATTTGAGATTTCTAA 59.795 38.462 0.00 0.00 0.00 2.10
539 553 7.255242 GCGGATCATGGATTTGAGATTTCTAAA 60.255 37.037 0.00 0.00 0.00 1.85
540 554 8.790718 CGGATCATGGATTTGAGATTTCTAAAT 58.209 33.333 0.00 0.00 0.00 1.40
544 558 8.698210 TCATGGATTTGAGATTTCTAAATTGGG 58.302 33.333 0.00 0.00 0.00 4.12
545 559 7.422465 TGGATTTGAGATTTCTAAATTGGGG 57.578 36.000 0.00 0.00 0.00 4.96
546 560 6.959366 TGGATTTGAGATTTCTAAATTGGGGT 59.041 34.615 0.00 0.00 0.00 4.95
547 561 8.119246 TGGATTTGAGATTTCTAAATTGGGGTA 58.881 33.333 0.00 0.00 0.00 3.69
548 562 9.147732 GGATTTGAGATTTCTAAATTGGGGTAT 57.852 33.333 0.00 0.00 0.00 2.73
551 565 7.801716 TGAGATTTCTAAATTGGGGTATTCG 57.198 36.000 0.00 0.00 0.00 3.34
552 566 7.570132 TGAGATTTCTAAATTGGGGTATTCGA 58.430 34.615 0.00 0.00 0.00 3.71
553 567 8.217799 TGAGATTTCTAAATTGGGGTATTCGAT 58.782 33.333 0.00 0.00 0.00 3.59
554 568 8.996651 AGATTTCTAAATTGGGGTATTCGATT 57.003 30.769 0.00 0.00 0.00 3.34
555 569 8.850156 AGATTTCTAAATTGGGGTATTCGATTG 58.150 33.333 0.00 0.00 0.00 2.67
556 570 7.948034 TTTCTAAATTGGGGTATTCGATTGT 57.052 32.000 0.00 0.00 0.00 2.71
557 571 6.935741 TCTAAATTGGGGTATTCGATTGTG 57.064 37.500 0.00 0.00 0.00 3.33
558 572 6.654959 TCTAAATTGGGGTATTCGATTGTGA 58.345 36.000 0.00 0.00 0.00 3.58
559 573 7.113437 TCTAAATTGGGGTATTCGATTGTGAA 58.887 34.615 0.00 0.00 0.00 3.18
560 574 6.597832 AAATTGGGGTATTCGATTGTGAAA 57.402 33.333 0.00 0.00 0.00 2.69
561 575 6.597832 AATTGGGGTATTCGATTGTGAAAA 57.402 33.333 0.00 0.00 0.00 2.29
562 576 6.597832 ATTGGGGTATTCGATTGTGAAAAA 57.402 33.333 0.00 0.00 0.00 1.94
588 602 9.832445 AATATATTTGACGACTTACCAATCACT 57.168 29.630 0.00 0.00 0.00 3.41
589 603 5.862924 ATTTGACGACTTACCAATCACTG 57.137 39.130 0.00 0.00 0.00 3.66
590 604 4.330944 TTGACGACTTACCAATCACTGT 57.669 40.909 0.00 0.00 0.00 3.55
591 605 3.909430 TGACGACTTACCAATCACTGTC 58.091 45.455 0.00 0.00 0.00 3.51
592 606 3.251571 GACGACTTACCAATCACTGTCC 58.748 50.000 0.00 0.00 0.00 4.02
593 607 2.631062 ACGACTTACCAATCACTGTCCA 59.369 45.455 0.00 0.00 0.00 4.02
594 608 2.993899 CGACTTACCAATCACTGTCCAC 59.006 50.000 0.00 0.00 0.00 4.02
595 609 2.993899 GACTTACCAATCACTGTCCACG 59.006 50.000 0.00 0.00 0.00 4.94
596 610 2.289444 ACTTACCAATCACTGTCCACGG 60.289 50.000 0.00 0.00 0.00 4.94
597 611 0.611200 TACCAATCACTGTCCACGGG 59.389 55.000 0.00 0.00 0.00 5.28
598 612 1.377202 CCAATCACTGTCCACGGGG 60.377 63.158 0.00 0.00 0.00 5.73
599 613 1.374947 CAATCACTGTCCACGGGGT 59.625 57.895 2.12 0.00 34.93 4.95
600 614 0.955428 CAATCACTGTCCACGGGGTG 60.955 60.000 2.12 0.00 34.93 4.61
601 615 2.748058 AATCACTGTCCACGGGGTGC 62.748 60.000 2.12 0.00 34.93 5.01
613 627 2.516225 GGGTGCCCCATAAGCGTC 60.516 66.667 5.45 0.00 44.65 5.19
614 628 2.895372 GGTGCCCCATAAGCGTCG 60.895 66.667 0.00 0.00 0.00 5.12
615 629 2.895372 GTGCCCCATAAGCGTCGG 60.895 66.667 0.00 0.00 0.00 4.79
616 630 4.849310 TGCCCCATAAGCGTCGGC 62.849 66.667 0.00 0.00 40.16 5.54
618 632 4.215742 CCCCATAAGCGTCGGCGA 62.216 66.667 16.53 4.99 46.35 5.54
619 633 2.202824 CCCATAAGCGTCGGCGAA 60.203 61.111 16.53 0.00 46.35 4.70
620 634 1.594293 CCCATAAGCGTCGGCGAAT 60.594 57.895 16.53 2.33 46.35 3.34
621 635 1.564622 CCATAAGCGTCGGCGAATG 59.435 57.895 16.53 13.20 46.35 2.67
622 636 1.151777 CCATAAGCGTCGGCGAATGT 61.152 55.000 16.53 0.00 46.35 2.71
623 637 0.650512 CATAAGCGTCGGCGAATGTT 59.349 50.000 16.53 7.66 46.35 2.71
624 638 1.062002 CATAAGCGTCGGCGAATGTTT 59.938 47.619 16.53 14.11 46.35 2.83
625 639 0.440758 TAAGCGTCGGCGAATGTTTG 59.559 50.000 16.53 0.00 46.35 2.93
626 640 1.225376 AAGCGTCGGCGAATGTTTGA 61.225 50.000 16.53 0.00 46.35 2.69
627 641 1.225745 GCGTCGGCGAATGTTTGAG 60.226 57.895 16.53 0.00 41.33 3.02
628 642 1.623081 GCGTCGGCGAATGTTTGAGA 61.623 55.000 16.53 0.00 41.33 3.27
629 643 0.787787 CGTCGGCGAATGTTTGAGAA 59.212 50.000 12.92 0.00 41.33 2.87
630 644 1.193650 CGTCGGCGAATGTTTGAGAAA 59.806 47.619 12.92 0.00 41.33 2.52
631 645 2.159707 CGTCGGCGAATGTTTGAGAAAT 60.160 45.455 12.92 0.00 41.33 2.17
632 646 3.417185 GTCGGCGAATGTTTGAGAAATC 58.583 45.455 12.92 0.00 0.00 2.17
633 647 2.093625 TCGGCGAATGTTTGAGAAATCG 59.906 45.455 7.35 0.00 0.00 3.34
634 648 2.093625 CGGCGAATGTTTGAGAAATCGA 59.906 45.455 0.00 0.00 32.38 3.59
635 649 3.424302 CGGCGAATGTTTGAGAAATCGAA 60.424 43.478 0.00 0.00 32.38 3.71
636 650 4.662145 GGCGAATGTTTGAGAAATCGAAT 58.338 39.130 0.00 0.00 32.38 3.34
637 651 5.095490 GGCGAATGTTTGAGAAATCGAATT 58.905 37.500 0.00 0.00 32.38 2.17
638 652 5.572896 GGCGAATGTTTGAGAAATCGAATTT 59.427 36.000 0.00 0.00 34.64 1.82
639 653 6.452735 GCGAATGTTTGAGAAATCGAATTTG 58.547 36.000 0.00 0.00 31.47 2.32
640 654 6.452735 CGAATGTTTGAGAAATCGAATTTGC 58.547 36.000 0.00 0.00 31.47 3.68
641 655 6.306356 CGAATGTTTGAGAAATCGAATTTGCT 59.694 34.615 0.00 0.00 31.47 3.91
642 656 7.148918 CGAATGTTTGAGAAATCGAATTTGCTT 60.149 33.333 0.00 0.00 31.47 3.91
643 657 9.128107 GAATGTTTGAGAAATCGAATTTGCTTA 57.872 29.630 0.00 0.00 31.47 3.09
644 658 9.643693 AATGTTTGAGAAATCGAATTTGCTTAT 57.356 25.926 0.00 0.00 31.47 1.73
645 659 8.673626 TGTTTGAGAAATCGAATTTGCTTATC 57.326 30.769 0.00 0.00 31.47 1.75
646 660 7.754924 TGTTTGAGAAATCGAATTTGCTTATCC 59.245 33.333 0.00 0.00 31.47 2.59
647 661 6.048073 TGAGAAATCGAATTTGCTTATCCG 57.952 37.500 0.00 0.00 31.47 4.18
648 662 5.007626 TGAGAAATCGAATTTGCTTATCCGG 59.992 40.000 0.00 0.00 31.47 5.14
649 663 3.626028 AATCGAATTTGCTTATCCGGC 57.374 42.857 0.00 0.00 0.00 6.13
650 664 2.325583 TCGAATTTGCTTATCCGGCT 57.674 45.000 0.00 0.00 0.00 5.52
651 665 1.939934 TCGAATTTGCTTATCCGGCTG 59.060 47.619 0.00 0.00 0.00 4.85
652 666 1.670811 CGAATTTGCTTATCCGGCTGT 59.329 47.619 0.00 0.00 0.00 4.40
653 667 2.869801 CGAATTTGCTTATCCGGCTGTA 59.130 45.455 0.00 0.00 0.00 2.74
654 668 3.059597 CGAATTTGCTTATCCGGCTGTAG 60.060 47.826 0.00 0.00 0.00 2.74
655 669 3.838244 ATTTGCTTATCCGGCTGTAGA 57.162 42.857 0.00 0.00 0.00 2.59
656 670 2.596904 TTGCTTATCCGGCTGTAGAC 57.403 50.000 0.00 0.00 0.00 2.59
666 680 3.392769 CGGCTGTAGACGCTCTATATC 57.607 52.381 0.00 0.00 40.91 1.63
667 681 3.004171 CGGCTGTAGACGCTCTATATCT 58.996 50.000 0.00 0.00 40.91 1.98
668 682 3.062909 CGGCTGTAGACGCTCTATATCTC 59.937 52.174 0.00 0.00 40.91 2.75
669 683 3.375922 GGCTGTAGACGCTCTATATCTCC 59.624 52.174 0.00 0.00 30.76 3.71
670 684 3.375922 GCTGTAGACGCTCTATATCTCCC 59.624 52.174 0.00 0.00 30.76 4.30
671 685 4.580868 CTGTAGACGCTCTATATCTCCCA 58.419 47.826 0.00 0.00 30.76 4.37
672 686 5.180810 TGTAGACGCTCTATATCTCCCAT 57.819 43.478 0.00 0.00 30.76 4.00
673 687 5.571285 TGTAGACGCTCTATATCTCCCATT 58.429 41.667 0.00 0.00 30.76 3.16
674 688 5.648526 TGTAGACGCTCTATATCTCCCATTC 59.351 44.000 0.00 0.00 30.76 2.67
675 689 3.692101 AGACGCTCTATATCTCCCATTCG 59.308 47.826 0.00 0.00 0.00 3.34
676 690 2.164624 ACGCTCTATATCTCCCATTCGC 59.835 50.000 0.00 0.00 0.00 4.70
677 691 2.425312 CGCTCTATATCTCCCATTCGCT 59.575 50.000 0.00 0.00 0.00 4.93
678 692 3.628032 CGCTCTATATCTCCCATTCGCTA 59.372 47.826 0.00 0.00 0.00 4.26
679 693 4.496673 CGCTCTATATCTCCCATTCGCTAC 60.497 50.000 0.00 0.00 0.00 3.58
680 694 4.642885 GCTCTATATCTCCCATTCGCTACT 59.357 45.833 0.00 0.00 0.00 2.57
681 695 5.449862 GCTCTATATCTCCCATTCGCTACTG 60.450 48.000 0.00 0.00 0.00 2.74
682 696 5.816682 TCTATATCTCCCATTCGCTACTGA 58.183 41.667 0.00 0.00 0.00 3.41
683 697 6.246163 TCTATATCTCCCATTCGCTACTGAA 58.754 40.000 0.00 0.00 0.00 3.02
684 698 2.961526 TCTCCCATTCGCTACTGAAC 57.038 50.000 0.00 0.00 0.00 3.18
685 699 2.457598 TCTCCCATTCGCTACTGAACT 58.542 47.619 0.00 0.00 0.00 3.01
686 700 2.166459 TCTCCCATTCGCTACTGAACTG 59.834 50.000 0.00 0.00 0.00 3.16
687 701 2.166459 CTCCCATTCGCTACTGAACTGA 59.834 50.000 0.00 0.00 0.00 3.41
688 702 2.565391 TCCCATTCGCTACTGAACTGAA 59.435 45.455 0.00 0.00 0.00 3.02
689 703 3.007506 TCCCATTCGCTACTGAACTGAAA 59.992 43.478 0.00 0.00 0.00 2.69
690 704 3.751175 CCCATTCGCTACTGAACTGAAAA 59.249 43.478 0.00 0.00 0.00 2.29
691 705 4.142816 CCCATTCGCTACTGAACTGAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
692 706 4.398247 CATTCGCTACTGAACTGAAAAGC 58.602 43.478 0.00 0.00 0.00 3.51
693 707 2.413837 TCGCTACTGAACTGAAAAGCC 58.586 47.619 0.00 0.00 0.00 4.35
694 708 2.143122 CGCTACTGAACTGAAAAGCCA 58.857 47.619 0.00 0.00 0.00 4.75
695 709 2.548057 CGCTACTGAACTGAAAAGCCAA 59.452 45.455 0.00 0.00 0.00 4.52
696 710 3.189287 CGCTACTGAACTGAAAAGCCAAT 59.811 43.478 0.00 0.00 0.00 3.16
697 711 4.320494 CGCTACTGAACTGAAAAGCCAATT 60.320 41.667 0.00 0.00 0.00 2.32
698 712 5.106712 CGCTACTGAACTGAAAAGCCAATTA 60.107 40.000 0.00 0.00 0.00 1.40
699 713 6.567701 CGCTACTGAACTGAAAAGCCAATTAA 60.568 38.462 0.00 0.00 0.00 1.40
700 714 7.145323 GCTACTGAACTGAAAAGCCAATTAAA 58.855 34.615 0.00 0.00 0.00 1.52
701 715 7.814587 GCTACTGAACTGAAAAGCCAATTAAAT 59.185 33.333 0.00 0.00 0.00 1.40
702 716 9.696917 CTACTGAACTGAAAAGCCAATTAAATT 57.303 29.630 0.00 0.00 0.00 1.82
703 717 8.593492 ACTGAACTGAAAAGCCAATTAAATTC 57.407 30.769 0.00 0.00 0.00 2.17
704 718 7.657354 ACTGAACTGAAAAGCCAATTAAATTCC 59.343 33.333 0.00 0.00 0.00 3.01
705 719 6.644592 TGAACTGAAAAGCCAATTAAATTCCG 59.355 34.615 0.00 0.00 0.00 4.30
706 720 6.339587 ACTGAAAAGCCAATTAAATTCCGA 57.660 33.333 0.00 0.00 0.00 4.55
707 721 6.389906 ACTGAAAAGCCAATTAAATTCCGAG 58.610 36.000 0.00 0.00 0.00 4.63
708 722 5.167845 TGAAAAGCCAATTAAATTCCGAGC 58.832 37.500 0.00 0.00 0.00 5.03
709 723 4.799564 AAAGCCAATTAAATTCCGAGCA 57.200 36.364 0.00 0.00 0.00 4.26
710 724 3.782889 AGCCAATTAAATTCCGAGCAC 57.217 42.857 0.00 0.00 0.00 4.40
711 725 2.097466 AGCCAATTAAATTCCGAGCACG 59.903 45.455 0.00 0.00 39.43 5.34
712 726 2.450160 CCAATTAAATTCCGAGCACGC 58.550 47.619 0.00 0.00 38.29 5.34
713 727 2.159448 CCAATTAAATTCCGAGCACGCA 60.159 45.455 0.00 0.00 38.29 5.24
714 728 3.100817 CAATTAAATTCCGAGCACGCAG 58.899 45.455 0.00 0.00 38.29 5.18
715 729 2.087501 TTAAATTCCGAGCACGCAGA 57.912 45.000 0.00 0.00 38.29 4.26
716 730 1.640428 TAAATTCCGAGCACGCAGAG 58.360 50.000 0.00 0.00 38.29 3.35
717 731 1.639298 AAATTCCGAGCACGCAGAGC 61.639 55.000 0.00 0.00 46.67 4.09
725 739 2.906047 GCACGCAGAGCCTAATAGG 58.094 57.895 0.99 0.99 38.43 2.57
726 740 0.105039 GCACGCAGAGCCTAATAGGT 59.895 55.000 8.28 0.00 38.43 3.08
727 741 1.340248 GCACGCAGAGCCTAATAGGTA 59.660 52.381 8.28 0.00 38.43 3.08
728 742 2.608261 GCACGCAGAGCCTAATAGGTAG 60.608 54.545 8.28 0.00 38.43 3.18
729 743 2.885266 CACGCAGAGCCTAATAGGTAGA 59.115 50.000 8.28 0.00 37.80 2.59
730 744 3.318275 CACGCAGAGCCTAATAGGTAGAA 59.682 47.826 8.28 0.00 37.80 2.10
731 745 3.958798 ACGCAGAGCCTAATAGGTAGAAA 59.041 43.478 8.28 0.00 37.80 2.52
732 746 4.202131 ACGCAGAGCCTAATAGGTAGAAAC 60.202 45.833 8.28 0.00 37.80 2.78
733 747 4.202121 CGCAGAGCCTAATAGGTAGAAACA 60.202 45.833 8.28 0.00 37.80 2.83
734 748 5.671493 GCAGAGCCTAATAGGTAGAAACAA 58.329 41.667 8.28 0.00 37.80 2.83
735 749 6.113411 GCAGAGCCTAATAGGTAGAAACAAA 58.887 40.000 8.28 0.00 37.80 2.83
736 750 6.037281 GCAGAGCCTAATAGGTAGAAACAAAC 59.963 42.308 8.28 0.00 37.80 2.93
737 751 7.103641 CAGAGCCTAATAGGTAGAAACAAACA 58.896 38.462 8.28 0.00 37.80 2.83
738 752 7.606456 CAGAGCCTAATAGGTAGAAACAAACAA 59.394 37.037 8.28 0.00 37.80 2.83
739 753 8.329502 AGAGCCTAATAGGTAGAAACAAACAAT 58.670 33.333 8.28 0.00 37.80 2.71
740 754 8.507524 AGCCTAATAGGTAGAAACAAACAATC 57.492 34.615 8.28 0.00 37.80 2.67
741 755 7.556635 AGCCTAATAGGTAGAAACAAACAATCC 59.443 37.037 8.28 0.00 37.80 3.01
742 756 7.338449 GCCTAATAGGTAGAAACAAACAATCCA 59.662 37.037 8.28 0.00 37.80 3.41
743 757 9.238368 CCTAATAGGTAGAAACAAACAATCCAA 57.762 33.333 0.00 0.00 30.50 3.53
768 782 6.470557 AAAAACAGCGCGTAAGATAAGTAA 57.529 33.333 8.43 0.00 43.02 2.24
769 783 6.470557 AAAACAGCGCGTAAGATAAGTAAA 57.529 33.333 8.43 0.00 43.02 2.01
770 784 6.470557 AAACAGCGCGTAAGATAAGTAAAA 57.529 33.333 8.43 0.00 43.02 1.52
771 785 5.446031 ACAGCGCGTAAGATAAGTAAAAC 57.554 39.130 8.43 0.00 43.02 2.43
772 786 4.925054 ACAGCGCGTAAGATAAGTAAAACA 59.075 37.500 8.43 0.00 43.02 2.83
773 787 5.579511 ACAGCGCGTAAGATAAGTAAAACAT 59.420 36.000 8.43 0.00 43.02 2.71
811 825 9.944376 GATAAGTTATAGATATGCCTTGTGGAA 57.056 33.333 0.00 0.00 34.57 3.53
846 860 1.594862 GATGTGCCTTGTATGAGTCGC 59.405 52.381 0.00 0.00 0.00 5.19
852 866 2.810650 CCTTGTATGAGTCGCAGTACC 58.189 52.381 0.00 0.00 0.00 3.34
869 883 3.788142 AGTACCTGGGTGGATGATGAATT 59.212 43.478 2.07 0.00 39.71 2.17
923 937 0.739813 GGAATACGCCGAGTGCTGTT 60.740 55.000 0.00 0.00 38.05 3.16
950 970 2.344093 AAGCAGAGGGGTAAGAGGAA 57.656 50.000 0.00 0.00 0.00 3.36
1136 1164 3.774842 ATCCAGGTCTCTCTCTTCCTT 57.225 47.619 0.00 0.00 0.00 3.36
1169 1197 1.140407 GAGTCGCAAATCCCGTCTCG 61.140 60.000 0.00 0.00 32.98 4.04
1393 1468 5.363979 GTGATTTTCACTTCCTGTTCTCC 57.636 43.478 0.45 0.00 43.73 3.71
1439 1514 0.800012 TGATTTTTCTACGGCGTGGC 59.200 50.000 24.86 6.13 0.00 5.01
1457 1532 4.398044 CGTGGCAGTAATTATTTTGGACCT 59.602 41.667 0.00 0.00 0.00 3.85
1777 1903 2.165998 GAATTGAGGAAGCACTTGCCT 58.834 47.619 0.00 0.34 43.38 4.75
1800 1926 8.454106 GCCTTCACCATCATGTTGATATATTAC 58.546 37.037 5.30 0.00 34.28 1.89
1813 1939 9.725019 TGTTGATATATTACCAAGATGGCTAAG 57.275 33.333 0.00 0.00 42.67 2.18
1814 1940 9.944376 GTTGATATATTACCAAGATGGCTAAGA 57.056 33.333 0.00 0.00 42.67 2.10
2028 2303 5.729510 AGAAGTATCTTCTGCCTTGTTCTC 58.270 41.667 10.63 0.00 29.15 2.87
2071 2346 3.567478 ACTATTCTGATTGACCAGGGC 57.433 47.619 0.00 0.00 34.99 5.19
2333 2772 3.119743 GCACTTGTGCAAATATCAGCTCA 60.120 43.478 19.36 1.53 33.05 4.26
2350 2789 2.911484 CTCATGCACTCCTAGGGAAAC 58.089 52.381 9.46 0.00 0.00 2.78
2411 2850 1.839424 GGAAAGACCCATGTTCCAGG 58.161 55.000 7.07 0.00 40.53 4.45
2992 4792 4.744795 AGGTAGTCTCATGGATGTGTTC 57.255 45.455 0.00 0.00 0.00 3.18
3014 4815 6.499106 TCTTTCAAGCACATCCATCCTATA 57.501 37.500 0.00 0.00 0.00 1.31
3094 4904 7.734924 TCCATCATTACAAGTCAATATCTGC 57.265 36.000 0.00 0.00 0.00 4.26
3103 4915 7.701539 ACAAGTCAATATCTGCAATTTGGTA 57.298 32.000 0.00 0.00 0.00 3.25
3183 5200 5.465390 TCAAGTTTGTCTGATTTGGACTACG 59.535 40.000 0.00 0.00 35.04 3.51
3378 5410 7.277539 AGTTCTTCATTCTCTAATCTTTCAGCG 59.722 37.037 0.00 0.00 0.00 5.18
3410 5442 3.665190 AGCAGCTACCTACAACTTTGAC 58.335 45.455 0.00 0.00 0.00 3.18
3436 5468 2.879646 AGAATACCTACTCGAAGGAGCG 59.120 50.000 10.18 0.00 44.48 5.03
3672 5704 4.206375 TGAATTGGACTTGAAGCACTTCA 58.794 39.130 8.99 8.99 46.72 3.02
3677 5709 3.808265 TGGACTTGAAGCACTTCATCCAG 60.808 47.826 22.92 16.09 46.01 3.86
3724 5756 7.985184 TGGACAGAAATGGTATACATCTGTTAC 59.015 37.037 22.62 19.68 45.04 2.50
3837 5891 6.484643 CCATACCTAGTCAGCGTACTAACTTA 59.515 42.308 3.32 0.00 31.72 2.24
3838 5892 7.012704 CCATACCTAGTCAGCGTACTAACTTAA 59.987 40.741 3.32 0.00 31.72 1.85
3840 5894 9.784531 ATACCTAGTCAGCGTACTAACTTAATA 57.215 33.333 3.32 0.00 31.72 0.98
3841 5895 8.152309 ACCTAGTCAGCGTACTAACTTAATAG 57.848 38.462 3.32 0.00 31.72 1.73
3843 5897 8.068977 CCTAGTCAGCGTACTAACTTAATAGTG 58.931 40.741 3.32 0.00 36.78 2.74
3844 5898 6.793349 AGTCAGCGTACTAACTTAATAGTGG 58.207 40.000 0.00 0.00 36.78 4.00
3845 5899 6.600822 AGTCAGCGTACTAACTTAATAGTGGA 59.399 38.462 0.00 0.00 36.78 4.02
3846 5900 6.690528 GTCAGCGTACTAACTTAATAGTGGAC 59.309 42.308 0.00 0.00 36.78 4.02
3847 5901 6.375174 TCAGCGTACTAACTTAATAGTGGACA 59.625 38.462 0.00 0.00 36.78 4.02
3848 5902 6.691818 CAGCGTACTAACTTAATAGTGGACAG 59.308 42.308 0.00 0.00 36.78 3.51
3849 5903 6.600822 AGCGTACTAACTTAATAGTGGACAGA 59.399 38.462 0.00 0.00 36.78 3.41
3875 5933 8.908903 AGAATATTTTATGCCAACGGACATTAA 58.091 29.630 0.00 0.00 0.00 1.40
3993 6055 9.239002 CTTCTAGTATATTTACAGATATGCCGC 57.761 37.037 0.00 0.00 0.00 6.53
3994 6056 8.288689 TCTAGTATATTTACAGATATGCCGCA 57.711 34.615 0.00 0.00 0.00 5.69
3995 6057 8.745590 TCTAGTATATTTACAGATATGCCGCAA 58.254 33.333 0.00 0.00 0.00 4.85
4042 6119 5.014202 GGGGTTTTGTAATCATGTGTACCT 58.986 41.667 0.00 0.00 0.00 3.08
4066 6143 8.487176 CCTAAATTCAGGAACAAATTTGAAACG 58.513 33.333 24.64 8.73 36.87 3.60
4116 6194 9.736023 GTTAGCCTATAAAATTTCATGGTCAAG 57.264 33.333 0.00 0.00 0.00 3.02
4118 6196 5.985530 GCCTATAAAATTTCATGGTCAAGCC 59.014 40.000 0.00 0.00 37.90 4.35
4219 6357 9.685276 TGTCACATACCATCAATTATTTTCTCT 57.315 29.630 0.00 0.00 0.00 3.10
4364 6758 4.857037 GCCACAACTTTCCGATTTCAATAC 59.143 41.667 0.00 0.00 0.00 1.89
4473 6879 3.282557 TGGTGACAAGTACAGCACG 57.717 52.632 0.00 0.00 40.10 5.34
5041 7516 8.575589 GGTATATGGATGATGCAACAATGTTAA 58.424 33.333 0.00 0.00 0.00 2.01
5057 7532 2.035961 TGTTAAGTCAGCTTGTCTCGCT 59.964 45.455 0.00 0.00 38.49 4.93
5061 7536 2.678324 AGTCAGCTTGTCTCGCTAAAC 58.322 47.619 0.00 0.00 35.63 2.01
5078 7553 2.038387 AACGGATGGTGTATTCAGCC 57.962 50.000 0.00 0.00 40.84 4.85
5099 7574 4.679639 GCCGAACCATGTTATCACTCACTA 60.680 45.833 0.00 0.00 0.00 2.74
5151 7656 4.762251 AGGGTTCTTTGCTTTGTCATCTAC 59.238 41.667 0.00 0.00 0.00 2.59
5152 7657 4.762251 GGGTTCTTTGCTTTGTCATCTACT 59.238 41.667 0.00 0.00 0.00 2.57
5153 7658 5.938125 GGGTTCTTTGCTTTGTCATCTACTA 59.062 40.000 0.00 0.00 0.00 1.82
5154 7659 6.599638 GGGTTCTTTGCTTTGTCATCTACTAT 59.400 38.462 0.00 0.00 0.00 2.12
5155 7660 7.201652 GGGTTCTTTGCTTTGTCATCTACTATC 60.202 40.741 0.00 0.00 0.00 2.08
5156 7661 7.334421 GGTTCTTTGCTTTGTCATCTACTATCA 59.666 37.037 0.00 0.00 0.00 2.15
5157 7662 8.721478 GTTCTTTGCTTTGTCATCTACTATCAA 58.279 33.333 0.00 0.00 0.00 2.57
5160 7665 9.713740 CTTTGCTTTGTCATCTACTATCAATTC 57.286 33.333 0.00 0.00 0.00 2.17
5161 7666 7.468922 TGCTTTGTCATCTACTATCAATTCG 57.531 36.000 0.00 0.00 0.00 3.34
5162 7667 7.041721 TGCTTTGTCATCTACTATCAATTCGT 58.958 34.615 0.00 0.00 0.00 3.85
5163 7668 7.549134 TGCTTTGTCATCTACTATCAATTCGTT 59.451 33.333 0.00 0.00 0.00 3.85
5164 7669 8.391106 GCTTTGTCATCTACTATCAATTCGTTT 58.609 33.333 0.00 0.00 0.00 3.60
5192 7697 5.245075 TCCCATGGACCATGTTTTAGTTTTC 59.755 40.000 28.66 0.00 39.94 2.29
5227 7996 8.782339 TGTTTTAGTTAACTCTTAGGGCATAC 57.218 34.615 12.39 0.00 0.00 2.39
5256 8025 2.927864 TTTTTGAGCCCGACCCCA 59.072 55.556 0.00 0.00 0.00 4.96
5257 8026 1.228429 TTTTTGAGCCCGACCCCAG 60.228 57.895 0.00 0.00 0.00 4.45
5258 8027 2.706952 TTTTTGAGCCCGACCCCAGG 62.707 60.000 0.00 0.00 0.00 4.45
5478 8451 4.783621 TGGCTGCTGGCGATGGTC 62.784 66.667 12.46 0.00 42.94 4.02
5502 8475 4.814294 GCGGCGACCACGGATCTT 62.814 66.667 12.98 0.00 40.15 2.40
5708 8711 1.795768 TGGCAACGTCTCTGACATTC 58.204 50.000 0.00 0.00 42.51 2.67
5738 8742 2.126346 GGCATCGTTGTTGCAGGC 60.126 61.111 2.68 0.00 41.95 4.85
5764 8768 3.066342 GTCAACTCGATCGGGATGTTCTA 59.934 47.826 24.50 0.49 0.00 2.10
5949 8960 1.421485 GCTGTGATGTTTCGGCGAG 59.579 57.895 10.46 0.00 0.00 5.03
5972 8985 0.029700 CGCGTGTGGATGGATACGTA 59.970 55.000 0.00 0.00 38.67 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.597217 CTGCCACCGCTTTGGGAA 60.597 61.111 2.88 0.00 44.64 3.97
45 50 2.962569 CGTTCACCTCTGCCTCGA 59.037 61.111 0.00 0.00 0.00 4.04
52 57 4.021925 GCCCCTGCGTTCACCTCT 62.022 66.667 0.00 0.00 0.00 3.69
72 77 1.364721 CACCATATTTGCGTCGGACA 58.635 50.000 9.10 0.00 0.00 4.02
104 109 4.748679 GCTTCGCTGCCTTGCACG 62.749 66.667 0.00 0.00 35.60 5.34
109 114 3.695606 TCTCCGCTTCGCTGCCTT 61.696 61.111 0.00 0.00 0.00 4.35
118 123 4.314440 TTGCCGCAGTCTCCGCTT 62.314 61.111 0.00 0.00 0.00 4.68
135 142 3.626924 GTCCACCACAGCGAGGGT 61.627 66.667 0.00 0.00 38.10 4.34
143 150 1.066752 CTCGTCAACGTCCACCACA 59.933 57.895 2.09 0.00 40.80 4.17
221 228 4.386951 CCGGCGACATCCACCACA 62.387 66.667 9.30 0.00 0.00 4.17
237 247 0.755686 AATCCGTCATGAGAGGAGCC 59.244 55.000 20.52 0.00 37.49 4.70
256 266 3.570125 GGTGGACGTGAGATCTATGATGA 59.430 47.826 0.00 0.00 0.00 2.92
263 273 2.711922 GCCGGTGGACGTGAGATCT 61.712 63.158 1.90 0.00 42.24 2.75
283 293 1.616865 CAGAGTCCGGTACCTTGACAA 59.383 52.381 24.86 0.00 0.00 3.18
284 294 1.202964 TCAGAGTCCGGTACCTTGACA 60.203 52.381 24.86 8.80 0.00 3.58
289 299 0.392729 CTCGTCAGAGTCCGGTACCT 60.393 60.000 10.90 0.00 39.60 3.08
293 303 0.961358 CTTCCTCGTCAGAGTCCGGT 60.961 60.000 0.00 0.00 42.86 5.28
302 312 2.893215 TTCCCTACTCTTCCTCGTCA 57.107 50.000 0.00 0.00 0.00 4.35
318 328 4.570874 GCCGCCCTCTCCCATTCC 62.571 72.222 0.00 0.00 0.00 3.01
333 346 2.743928 CACAGGACTCAAGGCGCC 60.744 66.667 21.89 21.89 0.00 6.53
347 360 0.529773 GTGACACGAACCAGCTCACA 60.530 55.000 0.00 0.00 32.99 3.58
365 378 1.131883 GCGAGGTACAGTATGACGTGT 59.868 52.381 0.00 0.00 39.69 4.49
368 381 1.669265 TCAGCGAGGTACAGTATGACG 59.331 52.381 0.00 0.00 39.69 4.35
372 385 2.623889 GGTCATCAGCGAGGTACAGTAT 59.376 50.000 0.00 0.00 0.00 2.12
377 390 1.103803 TCTGGTCATCAGCGAGGTAC 58.896 55.000 0.00 0.00 43.06 3.34
386 399 1.347707 GGAGTGTTGGTCTGGTCATCA 59.652 52.381 0.00 0.00 0.00 3.07
388 401 0.321671 CGGAGTGTTGGTCTGGTCAT 59.678 55.000 0.00 0.00 0.00 3.06
389 402 0.757561 TCGGAGTGTTGGTCTGGTCA 60.758 55.000 0.00 0.00 0.00 4.02
394 407 2.058675 CCCTTCGGAGTGTTGGTCT 58.941 57.895 0.00 0.00 0.00 3.85
426 439 0.180171 CTCCGTTGTGCCCATATCCA 59.820 55.000 0.00 0.00 0.00 3.41
430 443 0.249120 CTGACTCCGTTGTGCCCATA 59.751 55.000 0.00 0.00 0.00 2.74
439 452 2.992114 AGCTCGCCTGACTCCGTT 60.992 61.111 0.00 0.00 0.00 4.44
440 453 3.444805 GAGCTCGCCTGACTCCGT 61.445 66.667 0.00 0.00 0.00 4.69
448 461 1.490574 AATCTAAGTGGAGCTCGCCT 58.509 50.000 7.83 2.54 0.00 5.52
450 463 3.983741 ACATAATCTAAGTGGAGCTCGC 58.016 45.455 7.83 3.05 0.00 5.03
510 524 3.619419 TCTCAAATCCATGATCCGCAAA 58.381 40.909 0.00 0.00 0.00 3.68
513 527 4.518211 AGAAATCTCAAATCCATGATCCGC 59.482 41.667 0.00 0.00 0.00 5.54
514 528 7.734924 TTAGAAATCTCAAATCCATGATCCG 57.265 36.000 0.00 0.00 0.00 4.18
518 532 8.698210 CCCAATTTAGAAATCTCAAATCCATGA 58.302 33.333 0.00 0.00 0.00 3.07
519 533 7.929785 CCCCAATTTAGAAATCTCAAATCCATG 59.070 37.037 0.00 0.00 0.00 3.66
520 534 7.624879 ACCCCAATTTAGAAATCTCAAATCCAT 59.375 33.333 0.00 0.00 0.00 3.41
521 535 6.959366 ACCCCAATTTAGAAATCTCAAATCCA 59.041 34.615 0.00 0.00 0.00 3.41
522 536 7.423844 ACCCCAATTTAGAAATCTCAAATCC 57.576 36.000 0.00 0.00 0.00 3.01
525 539 8.682710 CGAATACCCCAATTTAGAAATCTCAAA 58.317 33.333 0.00 0.00 0.00 2.69
526 540 8.050325 TCGAATACCCCAATTTAGAAATCTCAA 58.950 33.333 0.00 0.00 0.00 3.02
527 541 7.570132 TCGAATACCCCAATTTAGAAATCTCA 58.430 34.615 0.00 0.00 0.00 3.27
528 542 8.622948 ATCGAATACCCCAATTTAGAAATCTC 57.377 34.615 0.00 0.00 0.00 2.75
529 543 8.850156 CAATCGAATACCCCAATTTAGAAATCT 58.150 33.333 0.00 0.00 0.00 2.40
530 544 8.630037 ACAATCGAATACCCCAATTTAGAAATC 58.370 33.333 0.00 0.00 0.00 2.17
531 545 8.413229 CACAATCGAATACCCCAATTTAGAAAT 58.587 33.333 0.00 0.00 0.00 2.17
532 546 7.612244 TCACAATCGAATACCCCAATTTAGAAA 59.388 33.333 0.00 0.00 0.00 2.52
533 547 7.113437 TCACAATCGAATACCCCAATTTAGAA 58.887 34.615 0.00 0.00 0.00 2.10
534 548 6.654959 TCACAATCGAATACCCCAATTTAGA 58.345 36.000 0.00 0.00 0.00 2.10
535 549 6.935741 TCACAATCGAATACCCCAATTTAG 57.064 37.500 0.00 0.00 0.00 1.85
536 550 7.704578 TTTCACAATCGAATACCCCAATTTA 57.295 32.000 0.00 0.00 0.00 1.40
537 551 6.597832 TTTCACAATCGAATACCCCAATTT 57.402 33.333 0.00 0.00 0.00 1.82
538 552 6.597832 TTTTCACAATCGAATACCCCAATT 57.402 33.333 0.00 0.00 0.00 2.32
539 553 6.597832 TTTTTCACAATCGAATACCCCAAT 57.402 33.333 0.00 0.00 0.00 3.16
562 576 9.832445 AGTGATTGGTAAGTCGTCAAATATATT 57.168 29.630 0.00 0.00 0.00 1.28
563 577 9.261180 CAGTGATTGGTAAGTCGTCAAATATAT 57.739 33.333 0.00 0.00 0.00 0.86
564 578 8.255206 ACAGTGATTGGTAAGTCGTCAAATATA 58.745 33.333 0.00 0.00 0.00 0.86
565 579 7.103641 ACAGTGATTGGTAAGTCGTCAAATAT 58.896 34.615 0.00 0.00 0.00 1.28
566 580 6.460781 ACAGTGATTGGTAAGTCGTCAAATA 58.539 36.000 0.00 0.00 0.00 1.40
567 581 5.305585 ACAGTGATTGGTAAGTCGTCAAAT 58.694 37.500 0.00 0.00 0.00 2.32
568 582 4.699637 ACAGTGATTGGTAAGTCGTCAAA 58.300 39.130 0.00 0.00 0.00 2.69
569 583 4.304110 GACAGTGATTGGTAAGTCGTCAA 58.696 43.478 0.00 0.00 0.00 3.18
570 584 3.305813 GGACAGTGATTGGTAAGTCGTCA 60.306 47.826 0.00 0.00 0.00 4.35
571 585 3.251571 GGACAGTGATTGGTAAGTCGTC 58.748 50.000 0.00 0.00 0.00 4.20
572 586 2.631062 TGGACAGTGATTGGTAAGTCGT 59.369 45.455 0.00 0.00 0.00 4.34
573 587 2.993899 GTGGACAGTGATTGGTAAGTCG 59.006 50.000 0.00 0.00 0.00 4.18
574 588 2.993899 CGTGGACAGTGATTGGTAAGTC 59.006 50.000 0.00 0.00 0.00 3.01
575 589 2.289444 CCGTGGACAGTGATTGGTAAGT 60.289 50.000 0.00 0.00 0.00 2.24
576 590 2.346803 CCGTGGACAGTGATTGGTAAG 58.653 52.381 0.00 0.00 0.00 2.34
577 591 1.002659 CCCGTGGACAGTGATTGGTAA 59.997 52.381 0.00 0.00 0.00 2.85
578 592 0.611200 CCCGTGGACAGTGATTGGTA 59.389 55.000 0.00 0.00 0.00 3.25
579 593 1.374947 CCCGTGGACAGTGATTGGT 59.625 57.895 0.00 0.00 0.00 3.67
580 594 1.377202 CCCCGTGGACAGTGATTGG 60.377 63.158 0.00 0.00 0.00 3.16
581 595 0.955428 CACCCCGTGGACAGTGATTG 60.955 60.000 0.00 0.00 34.81 2.67
582 596 1.374947 CACCCCGTGGACAGTGATT 59.625 57.895 0.00 0.00 34.81 2.57
583 597 3.068881 CACCCCGTGGACAGTGAT 58.931 61.111 0.00 0.00 34.81 3.06
584 598 3.936203 GCACCCCGTGGACAGTGA 61.936 66.667 0.00 0.00 33.64 3.41
598 612 2.895372 CCGACGCTTATGGGGCAC 60.895 66.667 0.00 0.00 33.17 5.01
599 613 4.849310 GCCGACGCTTATGGGGCA 62.849 66.667 0.00 0.00 43.23 5.36
601 615 2.989055 ATTCGCCGACGCTTATGGGG 62.989 60.000 0.00 0.00 39.84 4.96
602 616 1.594293 ATTCGCCGACGCTTATGGG 60.594 57.895 0.00 0.00 39.84 4.00
603 617 1.151777 ACATTCGCCGACGCTTATGG 61.152 55.000 1.35 0.00 39.84 2.74
604 618 0.650512 AACATTCGCCGACGCTTATG 59.349 50.000 0.00 0.00 39.84 1.90
605 619 1.062002 CAAACATTCGCCGACGCTTAT 59.938 47.619 0.00 0.00 39.84 1.73
606 620 0.440758 CAAACATTCGCCGACGCTTA 59.559 50.000 0.00 0.00 39.84 3.09
607 621 1.206578 CAAACATTCGCCGACGCTT 59.793 52.632 0.00 0.00 39.84 4.68
608 622 1.626654 CTCAAACATTCGCCGACGCT 61.627 55.000 0.00 0.00 39.84 5.07
609 623 1.225745 CTCAAACATTCGCCGACGC 60.226 57.895 0.00 0.00 39.84 5.19
610 624 0.787787 TTCTCAAACATTCGCCGACG 59.212 50.000 0.00 0.00 42.01 5.12
611 625 2.961522 TTTCTCAAACATTCGCCGAC 57.038 45.000 0.00 0.00 0.00 4.79
612 626 2.093625 CGATTTCTCAAACATTCGCCGA 59.906 45.455 0.00 0.00 0.00 5.54
613 627 2.093625 TCGATTTCTCAAACATTCGCCG 59.906 45.455 0.00 0.00 0.00 6.46
614 628 3.740044 TCGATTTCTCAAACATTCGCC 57.260 42.857 0.00 0.00 0.00 5.54
615 629 6.452735 CAAATTCGATTTCTCAAACATTCGC 58.547 36.000 0.00 0.00 0.00 4.70
616 630 6.306356 AGCAAATTCGATTTCTCAAACATTCG 59.694 34.615 0.00 0.00 0.00 3.34
617 631 7.572502 AGCAAATTCGATTTCTCAAACATTC 57.427 32.000 0.00 0.00 0.00 2.67
618 632 7.951530 AAGCAAATTCGATTTCTCAAACATT 57.048 28.000 0.00 0.00 0.00 2.71
619 633 9.294030 GATAAGCAAATTCGATTTCTCAAACAT 57.706 29.630 0.00 0.00 0.00 2.71
620 634 7.754924 GGATAAGCAAATTCGATTTCTCAAACA 59.245 33.333 0.00 0.00 0.00 2.83
621 635 7.044706 CGGATAAGCAAATTCGATTTCTCAAAC 60.045 37.037 0.00 0.00 28.68 2.93
622 636 6.966632 CGGATAAGCAAATTCGATTTCTCAAA 59.033 34.615 0.00 0.00 28.68 2.69
623 637 6.458206 CCGGATAAGCAAATTCGATTTCTCAA 60.458 38.462 0.00 0.00 28.68 3.02
624 638 5.007626 CCGGATAAGCAAATTCGATTTCTCA 59.992 40.000 0.00 0.00 28.68 3.27
625 639 5.444122 CCGGATAAGCAAATTCGATTTCTC 58.556 41.667 0.00 0.00 28.68 2.87
626 640 4.261197 GCCGGATAAGCAAATTCGATTTCT 60.261 41.667 5.05 0.00 28.68 2.52
627 641 3.975035 GCCGGATAAGCAAATTCGATTTC 59.025 43.478 5.05 0.00 28.68 2.17
628 642 3.632145 AGCCGGATAAGCAAATTCGATTT 59.368 39.130 5.05 0.00 28.68 2.17
629 643 3.003689 CAGCCGGATAAGCAAATTCGATT 59.996 43.478 5.05 0.00 28.68 3.34
630 644 2.549754 CAGCCGGATAAGCAAATTCGAT 59.450 45.455 5.05 0.00 28.68 3.59
631 645 1.939934 CAGCCGGATAAGCAAATTCGA 59.060 47.619 5.05 0.00 28.68 3.71
632 646 1.670811 ACAGCCGGATAAGCAAATTCG 59.329 47.619 5.05 0.00 0.00 3.34
633 647 4.024809 GTCTACAGCCGGATAAGCAAATTC 60.025 45.833 5.05 0.00 0.00 2.17
634 648 3.877508 GTCTACAGCCGGATAAGCAAATT 59.122 43.478 5.05 0.00 0.00 1.82
635 649 3.467803 GTCTACAGCCGGATAAGCAAAT 58.532 45.455 5.05 0.00 0.00 2.32
636 650 2.737359 CGTCTACAGCCGGATAAGCAAA 60.737 50.000 5.05 0.00 0.00 3.68
637 651 1.202371 CGTCTACAGCCGGATAAGCAA 60.202 52.381 5.05 0.00 0.00 3.91
638 652 0.384309 CGTCTACAGCCGGATAAGCA 59.616 55.000 5.05 0.00 0.00 3.91
639 653 0.940047 GCGTCTACAGCCGGATAAGC 60.940 60.000 5.05 0.00 0.00 3.09
640 654 0.669077 AGCGTCTACAGCCGGATAAG 59.331 55.000 5.05 0.00 34.64 1.73
641 655 0.666913 GAGCGTCTACAGCCGGATAA 59.333 55.000 5.05 0.00 34.64 1.75
642 656 0.179026 AGAGCGTCTACAGCCGGATA 60.179 55.000 5.05 0.00 34.64 2.59
643 657 0.179026 TAGAGCGTCTACAGCCGGAT 60.179 55.000 5.05 0.00 34.64 4.18
644 658 0.179026 ATAGAGCGTCTACAGCCGGA 60.179 55.000 5.05 0.00 30.79 5.14
645 659 1.520494 TATAGAGCGTCTACAGCCGG 58.480 55.000 0.00 0.00 30.79 6.13
646 660 3.004171 AGATATAGAGCGTCTACAGCCG 58.996 50.000 0.00 0.00 30.79 5.52
647 661 3.375922 GGAGATATAGAGCGTCTACAGCC 59.624 52.174 0.00 0.00 30.79 4.85
648 662 3.375922 GGGAGATATAGAGCGTCTACAGC 59.624 52.174 0.00 0.00 30.79 4.40
649 663 4.580868 TGGGAGATATAGAGCGTCTACAG 58.419 47.826 0.00 0.00 30.79 2.74
650 664 4.635699 TGGGAGATATAGAGCGTCTACA 57.364 45.455 0.00 0.00 30.79 2.74
651 665 5.220700 CGAATGGGAGATATAGAGCGTCTAC 60.221 48.000 0.00 0.00 30.79 2.59
652 666 4.876679 CGAATGGGAGATATAGAGCGTCTA 59.123 45.833 0.00 0.00 32.87 2.59
653 667 3.692101 CGAATGGGAGATATAGAGCGTCT 59.308 47.826 0.00 0.00 0.00 4.18
654 668 3.732471 GCGAATGGGAGATATAGAGCGTC 60.732 52.174 0.00 0.00 0.00 5.19
655 669 2.164624 GCGAATGGGAGATATAGAGCGT 59.835 50.000 0.00 0.00 0.00 5.07
656 670 2.425312 AGCGAATGGGAGATATAGAGCG 59.575 50.000 0.00 0.00 0.00 5.03
657 671 4.642885 AGTAGCGAATGGGAGATATAGAGC 59.357 45.833 0.00 0.00 0.00 4.09
658 672 5.883115 TCAGTAGCGAATGGGAGATATAGAG 59.117 44.000 0.00 0.00 0.00 2.43
659 673 5.816682 TCAGTAGCGAATGGGAGATATAGA 58.183 41.667 0.00 0.00 0.00 1.98
660 674 6.151985 AGTTCAGTAGCGAATGGGAGATATAG 59.848 42.308 0.00 0.00 0.00 1.31
661 675 6.010850 AGTTCAGTAGCGAATGGGAGATATA 58.989 40.000 0.00 0.00 0.00 0.86
662 676 4.835615 AGTTCAGTAGCGAATGGGAGATAT 59.164 41.667 0.00 0.00 0.00 1.63
663 677 4.038042 CAGTTCAGTAGCGAATGGGAGATA 59.962 45.833 0.00 0.00 0.00 1.98
664 678 3.034635 AGTTCAGTAGCGAATGGGAGAT 58.965 45.455 0.00 0.00 0.00 2.75
665 679 2.166459 CAGTTCAGTAGCGAATGGGAGA 59.834 50.000 0.00 0.00 0.00 3.71
666 680 2.166459 TCAGTTCAGTAGCGAATGGGAG 59.834 50.000 0.00 0.00 0.00 4.30
667 681 2.176045 TCAGTTCAGTAGCGAATGGGA 58.824 47.619 0.00 0.00 0.00 4.37
668 682 2.672961 TCAGTTCAGTAGCGAATGGG 57.327 50.000 0.00 0.00 0.00 4.00
669 683 4.670221 GCTTTTCAGTTCAGTAGCGAATGG 60.670 45.833 0.00 0.00 0.00 3.16
670 684 4.398247 GCTTTTCAGTTCAGTAGCGAATG 58.602 43.478 0.00 0.00 0.00 2.67
671 685 3.437049 GGCTTTTCAGTTCAGTAGCGAAT 59.563 43.478 0.00 0.00 0.00 3.34
672 686 2.806244 GGCTTTTCAGTTCAGTAGCGAA 59.194 45.455 0.00 0.00 0.00 4.70
673 687 2.224185 TGGCTTTTCAGTTCAGTAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
674 688 2.143122 TGGCTTTTCAGTTCAGTAGCG 58.857 47.619 0.00 0.00 0.00 4.26
675 689 4.773323 ATTGGCTTTTCAGTTCAGTAGC 57.227 40.909 0.00 0.00 0.00 3.58
676 690 9.696917 AATTTAATTGGCTTTTCAGTTCAGTAG 57.303 29.630 0.00 0.00 0.00 2.57
677 691 9.691362 GAATTTAATTGGCTTTTCAGTTCAGTA 57.309 29.630 0.00 0.00 0.00 2.74
678 692 7.657354 GGAATTTAATTGGCTTTTCAGTTCAGT 59.343 33.333 0.00 0.00 0.00 3.41
679 693 7.148755 CGGAATTTAATTGGCTTTTCAGTTCAG 60.149 37.037 0.00 0.00 0.00 3.02
680 694 6.644592 CGGAATTTAATTGGCTTTTCAGTTCA 59.355 34.615 0.00 0.00 0.00 3.18
681 695 6.866248 TCGGAATTTAATTGGCTTTTCAGTTC 59.134 34.615 0.00 0.00 0.00 3.01
682 696 6.754193 TCGGAATTTAATTGGCTTTTCAGTT 58.246 32.000 0.00 0.00 0.00 3.16
683 697 6.339587 TCGGAATTTAATTGGCTTTTCAGT 57.660 33.333 0.00 0.00 0.00 3.41
684 698 5.289434 GCTCGGAATTTAATTGGCTTTTCAG 59.711 40.000 0.00 0.00 0.00 3.02
685 699 5.167845 GCTCGGAATTTAATTGGCTTTTCA 58.832 37.500 0.00 0.00 0.00 2.69
686 700 5.062183 GTGCTCGGAATTTAATTGGCTTTTC 59.938 40.000 0.00 0.00 0.00 2.29
687 701 4.929211 GTGCTCGGAATTTAATTGGCTTTT 59.071 37.500 0.00 0.00 0.00 2.27
688 702 4.494484 GTGCTCGGAATTTAATTGGCTTT 58.506 39.130 0.00 0.00 0.00 3.51
689 703 3.427503 CGTGCTCGGAATTTAATTGGCTT 60.428 43.478 0.00 0.00 0.00 4.35
690 704 2.097466 CGTGCTCGGAATTTAATTGGCT 59.903 45.455 0.00 0.00 0.00 4.75
691 705 2.450160 CGTGCTCGGAATTTAATTGGC 58.550 47.619 0.00 0.00 0.00 4.52
692 706 2.159448 TGCGTGCTCGGAATTTAATTGG 60.159 45.455 10.52 0.00 37.56 3.16
693 707 3.100817 CTGCGTGCTCGGAATTTAATTG 58.899 45.455 10.52 0.00 36.90 2.32
694 708 3.006940 TCTGCGTGCTCGGAATTTAATT 58.993 40.909 10.52 0.00 36.90 1.40
695 709 2.609459 CTCTGCGTGCTCGGAATTTAAT 59.391 45.455 10.52 0.00 36.90 1.40
696 710 1.999735 CTCTGCGTGCTCGGAATTTAA 59.000 47.619 10.52 0.00 36.90 1.52
697 711 1.640428 CTCTGCGTGCTCGGAATTTA 58.360 50.000 10.52 0.00 36.90 1.40
698 712 1.639298 GCTCTGCGTGCTCGGAATTT 61.639 55.000 10.52 0.00 36.90 1.82
699 713 2.103042 GCTCTGCGTGCTCGGAATT 61.103 57.895 10.52 0.00 36.90 2.17
700 714 2.510238 GCTCTGCGTGCTCGGAAT 60.510 61.111 10.52 0.00 36.90 3.01
701 715 4.742201 GGCTCTGCGTGCTCGGAA 62.742 66.667 10.52 0.00 36.90 4.30
703 717 2.635229 ATTAGGCTCTGCGTGCTCGG 62.635 60.000 10.52 0.00 37.56 4.63
704 718 0.030773 TATTAGGCTCTGCGTGCTCG 59.969 55.000 3.31 3.31 40.37 5.03
705 719 1.604185 CCTATTAGGCTCTGCGTGCTC 60.604 57.143 0.00 0.00 0.00 4.26
706 720 0.390860 CCTATTAGGCTCTGCGTGCT 59.609 55.000 0.00 0.00 0.00 4.40
707 721 0.105039 ACCTATTAGGCTCTGCGTGC 59.895 55.000 9.77 0.00 39.63 5.34
708 722 2.885266 TCTACCTATTAGGCTCTGCGTG 59.115 50.000 9.77 0.00 39.63 5.34
709 723 3.225177 TCTACCTATTAGGCTCTGCGT 57.775 47.619 9.77 0.00 39.63 5.24
710 724 4.202121 TGTTTCTACCTATTAGGCTCTGCG 60.202 45.833 9.77 0.00 39.63 5.18
711 725 5.277857 TGTTTCTACCTATTAGGCTCTGC 57.722 43.478 9.77 0.00 39.63 4.26
712 726 7.103641 TGTTTGTTTCTACCTATTAGGCTCTG 58.896 38.462 9.77 0.00 39.63 3.35
713 727 7.253905 TGTTTGTTTCTACCTATTAGGCTCT 57.746 36.000 9.77 0.00 39.63 4.09
714 728 7.916914 TTGTTTGTTTCTACCTATTAGGCTC 57.083 36.000 9.77 0.00 39.63 4.70
715 729 7.556635 GGATTGTTTGTTTCTACCTATTAGGCT 59.443 37.037 9.77 0.00 39.63 4.58
716 730 7.338449 TGGATTGTTTGTTTCTACCTATTAGGC 59.662 37.037 9.77 0.00 39.63 3.93
717 731 8.801882 TGGATTGTTTGTTTCTACCTATTAGG 57.198 34.615 8.25 8.25 42.49 2.69
745 759 6.470557 TTACTTATCTTACGCGCTGTTTTT 57.529 33.333 5.73 0.00 0.00 1.94
746 760 6.470557 TTTACTTATCTTACGCGCTGTTTT 57.529 33.333 5.73 0.00 0.00 2.43
747 761 6.073657 TGTTTTACTTATCTTACGCGCTGTTT 60.074 34.615 5.73 0.00 0.00 2.83
748 762 5.406175 TGTTTTACTTATCTTACGCGCTGTT 59.594 36.000 5.73 0.00 0.00 3.16
749 763 4.925054 TGTTTTACTTATCTTACGCGCTGT 59.075 37.500 5.73 8.05 0.00 4.40
750 764 5.444586 TGTTTTACTTATCTTACGCGCTG 57.555 39.130 5.73 1.02 0.00 5.18
751 765 5.579511 ACATGTTTTACTTATCTTACGCGCT 59.420 36.000 5.73 0.00 0.00 5.92
752 766 5.792631 ACATGTTTTACTTATCTTACGCGC 58.207 37.500 5.73 0.00 0.00 6.86
852 866 1.684983 GCCAATTCATCATCCACCCAG 59.315 52.381 0.00 0.00 0.00 4.45
869 883 4.401022 AGATCACTGAAGACAATTTGCCA 58.599 39.130 0.00 0.00 0.00 4.92
1136 1164 1.667154 CGACTCCCATGAGGAAGCGA 61.667 60.000 13.99 0.00 46.94 4.93
1393 1468 6.741109 ACCCGCGAAATAAATAAATAAAGGG 58.259 36.000 8.23 0.00 38.54 3.95
1439 1514 8.352942 GCCAATCTAGGTCCAAAATAATTACTG 58.647 37.037 0.00 0.00 0.00 2.74
1457 1532 5.130705 TCTTGAGAGGTAGAGCCAATCTA 57.869 43.478 0.00 0.00 39.64 1.98
1910 2047 9.669887 TGAGGATGGGAAAATAAAAATCAAATG 57.330 29.630 0.00 0.00 0.00 2.32
2006 2281 4.873259 GGAGAACAAGGCAGAAGATACTTC 59.127 45.833 0.00 0.00 0.00 3.01
2028 2303 2.512692 TCATGTCACCAATCAAGGGG 57.487 50.000 0.00 0.00 0.00 4.79
2071 2346 9.791820 TGAATGCAATTATTTGTGATAAGTGAG 57.208 29.630 9.57 0.00 36.07 3.51
2333 2772 0.919710 GGGTTTCCCTAGGAGTGCAT 59.080 55.000 11.48 0.00 41.34 3.96
2350 2789 1.173913 GAATCCGGAACAACTTGGGG 58.826 55.000 9.01 0.00 0.00 4.96
2355 2794 3.347216 CCATTCTGAATCCGGAACAACT 58.653 45.455 9.01 0.00 40.21 3.16
2613 4364 4.745620 GTGAGTAGACGGCATCCTAAATTC 59.254 45.833 0.00 0.00 0.00 2.17
2667 4436 7.259882 TGATTGTTTATGAGATTGTGATTGCC 58.740 34.615 0.00 0.00 0.00 4.52
2992 4792 5.180868 GCTATAGGATGGATGTGCTTGAAAG 59.819 44.000 1.04 0.00 0.00 2.62
3014 4815 4.164988 ACAAAGTATGGATTCCTAGCTGCT 59.835 41.667 7.57 7.57 0.00 4.24
3118 4931 4.038402 AGCAACTTCTTCATGGGAAAAGTG 59.962 41.667 0.00 0.00 30.95 3.16
3376 5408 3.181513 GGTAGCTGCTTTTAGGTAAACGC 60.182 47.826 7.79 4.45 39.84 4.84
3378 5410 6.168389 TGTAGGTAGCTGCTTTTAGGTAAAC 58.832 40.000 7.79 0.00 32.97 2.01
3410 5442 6.452494 TCCTTCGAGTAGGTATTCTTGAAG 57.548 41.667 12.54 12.54 44.96 3.02
3436 5468 3.679389 TCCTGAAGAGGAATCAAGCAAC 58.321 45.455 0.00 0.00 46.19 4.17
3672 5704 6.176183 CAACTTCAAATGTAGGAGACTGGAT 58.824 40.000 0.00 0.00 43.88 3.41
3677 5709 4.455877 CCACCAACTTCAAATGTAGGAGAC 59.544 45.833 0.00 0.00 0.00 3.36
3795 5828 7.685849 AGGTATGGTAAGCTAAAGGATACAA 57.314 36.000 0.00 0.00 41.41 2.41
3837 5891 9.289782 GGCATAAAATATTCTCTGTCCACTATT 57.710 33.333 0.00 0.00 0.00 1.73
3838 5892 8.439971 TGGCATAAAATATTCTCTGTCCACTAT 58.560 33.333 0.00 0.00 0.00 2.12
3840 5894 6.662755 TGGCATAAAATATTCTCTGTCCACT 58.337 36.000 0.00 0.00 0.00 4.00
3841 5895 6.942532 TGGCATAAAATATTCTCTGTCCAC 57.057 37.500 0.00 0.00 0.00 4.02
3843 5897 6.430451 CGTTGGCATAAAATATTCTCTGTCC 58.570 40.000 0.00 0.00 0.00 4.02
3844 5898 6.260050 TCCGTTGGCATAAAATATTCTCTGTC 59.740 38.462 0.00 0.00 0.00 3.51
3845 5899 6.038271 GTCCGTTGGCATAAAATATTCTCTGT 59.962 38.462 0.00 0.00 0.00 3.41
3846 5900 6.038161 TGTCCGTTGGCATAAAATATTCTCTG 59.962 38.462 0.00 0.00 0.00 3.35
3847 5901 6.119536 TGTCCGTTGGCATAAAATATTCTCT 58.880 36.000 0.00 0.00 0.00 3.10
3848 5902 6.371809 TGTCCGTTGGCATAAAATATTCTC 57.628 37.500 0.00 0.00 0.00 2.87
3849 5903 6.959639 ATGTCCGTTGGCATAAAATATTCT 57.040 33.333 0.00 0.00 0.00 2.40
3854 5908 7.106439 TCATTAATGTCCGTTGGCATAAAAT 57.894 32.000 14.97 0.00 0.00 1.82
3875 5933 2.568062 TGCACAAAAATCTGGCCATCAT 59.432 40.909 5.51 0.00 0.00 2.45
3991 6053 6.092092 TCTATTGAAATTGGAATGTGTTGCG 58.908 36.000 0.00 0.00 0.00 4.85
3992 6054 7.315142 TCTCTATTGAAATTGGAATGTGTTGC 58.685 34.615 0.00 0.00 0.00 4.17
3993 6055 9.350357 CTTCTCTATTGAAATTGGAATGTGTTG 57.650 33.333 0.00 0.00 0.00 3.33
3994 6056 8.526147 CCTTCTCTATTGAAATTGGAATGTGTT 58.474 33.333 0.00 0.00 0.00 3.32
3995 6057 7.123247 CCCTTCTCTATTGAAATTGGAATGTGT 59.877 37.037 0.00 0.00 0.00 3.72
4042 6119 8.934507 ACGTTTCAAATTTGTTCCTGAATTTA 57.065 26.923 17.47 0.00 34.62 1.40
4158 6239 7.519927 ACCGGTGGTACCAAATATATAAATGT 58.480 34.615 18.31 0.00 38.47 2.71
4162 6243 7.377696 AGAACCGGTGGTACCAAATATATAA 57.622 36.000 18.31 0.00 38.47 0.98
4219 6357 8.415950 AATACAATGTTACCCAGAAACAATCA 57.584 30.769 0.00 0.00 40.05 2.57
4290 6677 2.036556 GACACAACTTCGTGGCATTG 57.963 50.000 0.00 0.00 44.86 2.82
4364 6758 6.152154 ACCCCGGAAAATGTATTTGAAGTTAG 59.848 38.462 0.73 0.00 0.00 2.34
4410 6816 5.395103 CCTGTTGACAAAAATGGGAAGTGAA 60.395 40.000 0.00 0.00 0.00 3.18
4473 6879 2.409948 AGTACAAGCTGAGGCAATCC 57.590 50.000 0.00 0.00 41.70 3.01
5041 7516 2.678324 GTTTAGCGAGACAAGCTGACT 58.322 47.619 0.49 0.00 45.60 3.41
5057 7532 3.537580 GGCTGAATACACCATCCGTTTA 58.462 45.455 0.00 0.00 0.00 2.01
5061 7536 0.104120 TCGGCTGAATACACCATCCG 59.896 55.000 0.00 0.00 37.00 4.18
5078 7553 7.867909 ACATATAGTGAGTGATAACATGGTTCG 59.132 37.037 0.00 0.00 0.00 3.95
5099 7574 7.748677 TCATCAACTGGGAACATGATACATAT 58.251 34.615 0.00 0.00 37.85 1.78
5151 7656 6.710295 TCCATGGGATGTAAACGAATTGATAG 59.290 38.462 13.02 0.00 0.00 2.08
5152 7657 6.485313 GTCCATGGGATGTAAACGAATTGATA 59.515 38.462 13.02 0.00 32.73 2.15
5153 7658 5.299279 GTCCATGGGATGTAAACGAATTGAT 59.701 40.000 13.02 0.00 32.73 2.57
5154 7659 4.638421 GTCCATGGGATGTAAACGAATTGA 59.362 41.667 13.02 0.00 32.73 2.57
5155 7660 4.202010 GGTCCATGGGATGTAAACGAATTG 60.202 45.833 13.02 0.00 32.73 2.32
5156 7661 3.951680 GGTCCATGGGATGTAAACGAATT 59.048 43.478 13.02 0.00 32.73 2.17
5157 7662 3.053991 TGGTCCATGGGATGTAAACGAAT 60.054 43.478 13.02 0.00 32.73 3.34
5160 7665 2.411628 TGGTCCATGGGATGTAAACG 57.588 50.000 13.02 0.00 32.73 3.60
5161 7666 3.631250 ACATGGTCCATGGGATGTAAAC 58.369 45.455 30.96 0.00 45.16 2.01
5162 7667 4.329638 AACATGGTCCATGGGATGTAAA 57.670 40.909 30.96 0.00 45.16 2.01
5163 7668 4.329638 AAACATGGTCCATGGGATGTAA 57.670 40.909 30.96 0.00 45.16 2.41
5164 7669 4.329638 AAAACATGGTCCATGGGATGTA 57.670 40.909 30.96 0.00 45.16 2.29
5165 7670 2.925966 AAACATGGTCCATGGGATGT 57.074 45.000 30.96 14.51 45.16 3.06
5263 8032 1.599606 CTGGCGGCGCTAGGATCTAT 61.600 60.000 33.85 0.00 33.47 1.98
5264 8033 2.203437 TGGCGGCGCTAGGATCTA 60.203 61.111 32.30 5.27 0.00 1.98
5286 8240 1.671328 GATCTTTCGCTTTGGGGTAGC 59.329 52.381 0.00 0.00 35.29 3.58
5502 8475 1.438469 GATGGATCTGGGTGGGATCA 58.562 55.000 0.00 0.00 40.74 2.92
5738 8742 1.516386 CCCGATCGAGTTGACGTGG 60.516 63.158 18.66 1.31 34.70 4.94
5774 8780 4.262617 CGATCCGATAGACCCAGATCTAA 58.737 47.826 0.00 0.00 34.86 2.10
5860 8869 0.762461 CTCCTCTTGCCCCCTCTAGG 60.762 65.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.