Multiple sequence alignment - TraesCS1D01G157900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G157900 chr1D 100.000 8571 0 0 927 9497 222720971 222729541 0.000000e+00 15828.0
1 TraesCS1D01G157900 chr1D 94.293 806 37 3 8701 9497 435310273 435309468 0.000000e+00 1225.0
2 TraesCS1D01G157900 chr1D 94.293 806 36 4 8701 9497 492119334 492120138 0.000000e+00 1225.0
3 TraesCS1D01G157900 chr1D 100.000 553 0 0 1 553 222720045 222720597 0.000000e+00 1022.0
4 TraesCS1D01G157900 chr1D 89.569 441 43 2 1 438 36527209 36527649 3.000000e-154 556.0
5 TraesCS1D01G157900 chr1D 85.360 444 30 12 1 441 463580232 463579821 2.450000e-115 427.0
6 TraesCS1D01G157900 chr1D 100.000 29 0 0 1047 1075 439746773 439746801 5.000000e-03 54.7
7 TraesCS1D01G157900 chr1A 97.180 7802 170 18 927 8702 288862169 288869946 0.000000e+00 13143.0
8 TraesCS1D01G157900 chr1A 87.500 112 5 2 443 553 288861943 288862046 4.660000e-23 121.0
9 TraesCS1D01G157900 chr1B 95.249 3094 111 21 4824 7898 322107685 322110761 0.000000e+00 4867.0
10 TraesCS1D01G157900 chr1B 93.377 1978 77 14 2394 4333 322105143 322107104 0.000000e+00 2878.0
11 TraesCS1D01G157900 chr1B 93.900 836 25 6 7891 8702 322111367 322112200 0.000000e+00 1238.0
12 TraesCS1D01G157900 chr1B 92.346 810 52 4 8698 9497 610349609 610350418 0.000000e+00 1144.0
13 TraesCS1D01G157900 chr1B 96.324 680 25 0 927 1606 322103494 322104173 0.000000e+00 1118.0
14 TraesCS1D01G157900 chr1B 94.378 498 25 1 4332 4826 322107144 322107641 0.000000e+00 761.0
15 TraesCS1D01G157900 chr1B 91.071 392 21 6 1530 1914 322104164 322104548 1.410000e-142 518.0
16 TraesCS1D01G157900 chr1B 84.922 451 35 4 1 448 398836117 398835697 8.820000e-115 425.0
17 TraesCS1D01G157900 chr1B 83.333 444 41 4 1 441 8779435 8779848 6.960000e-101 379.0
18 TraesCS1D01G157900 chr1B 92.720 261 11 1 2106 2358 322104889 322105149 4.190000e-98 370.0
19 TraesCS1D01G157900 chr1B 84.726 347 17 5 1913 2228 322104630 322104971 1.990000e-81 315.0
20 TraesCS1D01G157900 chr1B 88.889 81 9 0 2094 2174 322104925 322105005 6.070000e-17 100.0
21 TraesCS1D01G157900 chr3B 94.068 826 37 6 8682 9497 39388306 39387483 0.000000e+00 1243.0
22 TraesCS1D01G157900 chr3B 92.978 826 46 6 8682 9497 39362736 39361913 0.000000e+00 1194.0
23 TraesCS1D01G157900 chr3B 89.286 56 5 1 8693 8748 536889573 536889519 1.710000e-07 69.4
24 TraesCS1D01G157900 chr3D 94.022 803 38 4 8701 9494 583225692 583226493 0.000000e+00 1208.0
25 TraesCS1D01G157900 chr3D 92.099 443 31 3 2 441 486068317 486067876 1.050000e-173 621.0
26 TraesCS1D01G157900 chr6D 93.846 780 35 7 8728 9497 336363909 336363133 0.000000e+00 1162.0
27 TraesCS1D01G157900 chr6D 89.888 445 41 3 1 441 13009525 13009081 3.850000e-158 569.0
28 TraesCS1D01G157900 chr6D 88.964 444 29 4 1 441 144190001 144190427 1.820000e-146 531.0
29 TraesCS1D01G157900 chr6D 86.222 450 43 9 1 447 353052782 353053215 4.020000e-128 470.0
30 TraesCS1D01G157900 chr7D 92.680 806 49 4 8701 9497 54603298 54604102 0.000000e+00 1153.0
31 TraesCS1D01G157900 chr7B 92.547 805 51 6 8701 9497 673978377 673977574 0.000000e+00 1146.0
32 TraesCS1D01G157900 chr7B 89.213 445 42 5 1 441 721728141 721728583 1.390000e-152 551.0
33 TraesCS1D01G157900 chr6A 89.896 386 34 4 60 441 14246597 14246213 8.570000e-135 492.0
34 TraesCS1D01G157900 chr6A 94.444 54 3 0 4973 5026 338522679 338522626 6.110000e-12 84.2
35 TraesCS1D01G157900 chr2B 85.586 444 35 9 1 441 672776926 672776509 1.130000e-118 438.0
36 TraesCS1D01G157900 chr4D 84.685 444 49 4 1 441 121173291 121172864 8.820000e-115 425.0
37 TraesCS1D01G157900 chr4D 94.444 54 3 0 4973 5026 123585619 123585566 6.110000e-12 84.2
38 TraesCS1D01G157900 chr5D 89.354 263 25 1 7 269 473442375 473442116 2.560000e-85 327.0
39 TraesCS1D01G157900 chr2D 96.296 54 2 0 4973 5026 17960182 17960235 1.310000e-13 89.8
40 TraesCS1D01G157900 chr6B 94.444 54 3 0 4973 5026 525685235 525685182 6.110000e-12 84.2
41 TraesCS1D01G157900 chr6B 94.444 54 3 0 4973 5026 638951370 638951423 6.110000e-12 84.2
42 TraesCS1D01G157900 chr5B 94.444 54 3 0 4973 5026 713038769 713038822 6.110000e-12 84.2
43 TraesCS1D01G157900 chr4B 94.444 54 3 0 4973 5026 209142559 209142612 6.110000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G157900 chr1D 222720045 222729541 9496 False 8425.000000 15828 100.000000 1 9497 2 chr1D.!!$F4 9496
1 TraesCS1D01G157900 chr1D 435309468 435310273 805 True 1225.000000 1225 94.293000 8701 9497 1 chr1D.!!$R1 796
2 TraesCS1D01G157900 chr1D 492119334 492120138 804 False 1225.000000 1225 94.293000 8701 9497 1 chr1D.!!$F3 796
3 TraesCS1D01G157900 chr1A 288861943 288869946 8003 False 6632.000000 13143 92.340000 443 8702 2 chr1A.!!$F1 8259
4 TraesCS1D01G157900 chr1B 322103494 322112200 8706 False 1351.666667 4867 92.292667 927 8702 9 chr1B.!!$F3 7775
5 TraesCS1D01G157900 chr1B 610349609 610350418 809 False 1144.000000 1144 92.346000 8698 9497 1 chr1B.!!$F2 799
6 TraesCS1D01G157900 chr3B 39387483 39388306 823 True 1243.000000 1243 94.068000 8682 9497 1 chr3B.!!$R2 815
7 TraesCS1D01G157900 chr3B 39361913 39362736 823 True 1194.000000 1194 92.978000 8682 9497 1 chr3B.!!$R1 815
8 TraesCS1D01G157900 chr3D 583225692 583226493 801 False 1208.000000 1208 94.022000 8701 9494 1 chr3D.!!$F1 793
9 TraesCS1D01G157900 chr6D 336363133 336363909 776 True 1162.000000 1162 93.846000 8728 9497 1 chr6D.!!$R2 769
10 TraesCS1D01G157900 chr7D 54603298 54604102 804 False 1153.000000 1153 92.680000 8701 9497 1 chr7D.!!$F1 796
11 TraesCS1D01G157900 chr7B 673977574 673978377 803 True 1146.000000 1146 92.547000 8701 9497 1 chr7B.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.034089 CCTCCCATTCCAACACCCTC 60.034 60.000 0.00 0.0 0.00 4.30 F
490 491 0.105224 TTTTCCGAGGACACAAGCGA 59.895 50.000 0.00 0.0 0.00 4.93 F
491 492 0.319555 TTTCCGAGGACACAAGCGAG 60.320 55.000 0.00 0.0 0.00 5.03 F
2041 2223 0.967662 CCATGCCAACAACATGTGGA 59.032 50.000 7.39 0.0 42.74 4.02 F
3099 3335 2.171237 CCATCAAGGCATACTCTCACCA 59.829 50.000 0.00 0.0 0.00 4.17 F
4017 4260 3.656559 AGCAAAACACCATGCATTCTTC 58.343 40.909 0.00 0.0 44.95 2.87 F
4752 5070 0.179048 TGAGGACGCCTATGCCATTG 60.179 55.000 0.00 0.0 31.76 2.82 F
5688 6066 0.319900 AAGTGTAGCTGTCCTGTGCG 60.320 55.000 0.00 0.0 0.00 5.34 F
6453 6831 1.805871 GCTCAGCAGATTCCGAGGAAG 60.806 57.143 10.56 0.0 37.56 3.46 F
8086 9110 1.227823 CCAGGTTGTCTTCCGTGCA 60.228 57.895 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2130 4.141274 ACATGTTATGGTGCTAAGGCCATA 60.141 41.667 5.01 0.00 43.09 2.74 R
1976 2150 4.269183 TGGAACATGTTATGGTGCTAAGG 58.731 43.478 11.95 0.00 39.28 2.69 R
2344 2577 4.418392 GCAACCAATCATGAAGCTTAGTG 58.582 43.478 0.00 1.08 0.00 2.74 R
3753 3996 1.127567 TAACCAGTCCTGCACCAGCT 61.128 55.000 0.00 0.00 42.74 4.24 R
4736 5054 1.070134 TCTACAATGGCATAGGCGTCC 59.930 52.381 0.00 0.00 42.47 4.79 R
5450 5826 1.645034 CAGTGCTTGGATGGACTACG 58.355 55.000 0.00 0.00 36.49 3.51 R
6339 6717 0.521291 TAGCTGGCATGCGTTCAAAC 59.479 50.000 12.44 0.00 38.13 2.93 R
7308 7692 0.256752 CATCCTCCTGCCATTGACCA 59.743 55.000 0.00 0.00 0.00 4.02 R
8249 9273 1.100510 TGAAGCCAGCATCTGCAATC 58.899 50.000 4.79 0.00 45.16 2.67 R
9000 10029 0.810031 CGGCGATGATCGTTCCCTTT 60.810 55.000 16.83 0.00 42.81 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.900892 CCTCACCGTATCCGCGCT 61.901 66.667 5.56 0.00 0.00 5.92
19 20 2.353607 CTCACCGTATCCGCGCTC 60.354 66.667 5.56 0.00 0.00 5.03
20 21 3.825833 CTCACCGTATCCGCGCTCC 62.826 68.421 5.56 0.00 0.00 4.70
21 22 4.944372 CACCGTATCCGCGCTCCC 62.944 72.222 5.56 0.00 0.00 4.30
24 25 4.977126 CGTATCCGCGCTCCCGTC 62.977 72.222 5.56 0.00 36.67 4.79
25 26 4.642542 GTATCCGCGCTCCCGTCC 62.643 72.222 5.56 0.00 36.67 4.79
35 36 4.854924 TCCCGTCCGTCGCCGATA 62.855 66.667 0.00 0.00 38.35 2.92
36 37 3.891400 CCCGTCCGTCGCCGATAA 61.891 66.667 0.00 0.00 38.35 1.75
37 38 2.353145 CCGTCCGTCGCCGATAAG 60.353 66.667 0.00 0.00 38.35 1.73
38 39 3.022914 CGTCCGTCGCCGATAAGC 61.023 66.667 0.00 0.00 35.63 3.09
39 40 2.103538 GTCCGTCGCCGATAAGCA 59.896 61.111 0.00 0.00 35.63 3.91
40 41 1.944676 GTCCGTCGCCGATAAGCAG 60.945 63.158 0.00 0.00 35.63 4.24
41 42 3.330853 CCGTCGCCGATAAGCAGC 61.331 66.667 0.00 0.00 35.63 5.25
42 43 3.330853 CGTCGCCGATAAGCAGCC 61.331 66.667 0.00 0.00 35.63 4.85
43 44 2.967615 GTCGCCGATAAGCAGCCC 60.968 66.667 0.00 0.00 0.00 5.19
44 45 4.235762 TCGCCGATAAGCAGCCCC 62.236 66.667 0.00 0.00 0.00 5.80
49 50 3.878667 GATAAGCAGCCCCGCCCT 61.879 66.667 0.00 0.00 0.00 5.19
50 51 2.447765 ATAAGCAGCCCCGCCCTA 60.448 61.111 0.00 0.00 0.00 3.53
51 52 1.842381 GATAAGCAGCCCCGCCCTAT 61.842 60.000 0.00 0.00 0.00 2.57
52 53 1.842381 ATAAGCAGCCCCGCCCTATC 61.842 60.000 0.00 0.00 0.00 2.08
55 56 3.631046 CAGCCCCGCCCTATCCTC 61.631 72.222 0.00 0.00 0.00 3.71
56 57 4.964241 AGCCCCGCCCTATCCTCC 62.964 72.222 0.00 0.00 0.00 4.30
58 59 4.574614 CCCCGCCCTATCCTCCCA 62.575 72.222 0.00 0.00 0.00 4.37
59 60 2.203998 CCCGCCCTATCCTCCCAT 60.204 66.667 0.00 0.00 0.00 4.00
60 61 1.847968 CCCGCCCTATCCTCCCATT 60.848 63.158 0.00 0.00 0.00 3.16
61 62 1.679898 CCGCCCTATCCTCCCATTC 59.320 63.158 0.00 0.00 0.00 2.67
62 63 1.679898 CGCCCTATCCTCCCATTCC 59.320 63.158 0.00 0.00 0.00 3.01
63 64 1.127567 CGCCCTATCCTCCCATTCCA 61.128 60.000 0.00 0.00 0.00 3.53
64 65 1.149101 GCCCTATCCTCCCATTCCAA 58.851 55.000 0.00 0.00 0.00 3.53
65 66 1.202940 GCCCTATCCTCCCATTCCAAC 60.203 57.143 0.00 0.00 0.00 3.77
66 67 2.135189 CCCTATCCTCCCATTCCAACA 58.865 52.381 0.00 0.00 0.00 3.33
67 68 2.158608 CCCTATCCTCCCATTCCAACAC 60.159 54.545 0.00 0.00 0.00 3.32
68 69 2.158608 CCTATCCTCCCATTCCAACACC 60.159 54.545 0.00 0.00 0.00 4.16
69 70 0.631212 ATCCTCCCATTCCAACACCC 59.369 55.000 0.00 0.00 0.00 4.61
70 71 0.477597 TCCTCCCATTCCAACACCCT 60.478 55.000 0.00 0.00 0.00 4.34
71 72 0.034089 CCTCCCATTCCAACACCCTC 60.034 60.000 0.00 0.00 0.00 4.30
72 73 0.392998 CTCCCATTCCAACACCCTCG 60.393 60.000 0.00 0.00 0.00 4.63
73 74 1.131303 TCCCATTCCAACACCCTCGT 61.131 55.000 0.00 0.00 0.00 4.18
74 75 0.676782 CCCATTCCAACACCCTCGTC 60.677 60.000 0.00 0.00 0.00 4.20
75 76 0.324943 CCATTCCAACACCCTCGTCT 59.675 55.000 0.00 0.00 0.00 4.18
76 77 1.676014 CCATTCCAACACCCTCGTCTC 60.676 57.143 0.00 0.00 0.00 3.36
77 78 0.613777 ATTCCAACACCCTCGTCTCC 59.386 55.000 0.00 0.00 0.00 3.71
78 79 1.477685 TTCCAACACCCTCGTCTCCC 61.478 60.000 0.00 0.00 0.00 4.30
79 80 2.663196 CAACACCCTCGTCTCCCC 59.337 66.667 0.00 0.00 0.00 4.81
80 81 2.995574 AACACCCTCGTCTCCCCG 60.996 66.667 0.00 0.00 0.00 5.73
114 115 4.430765 CGGTAAGCAGTCGCGGGT 62.431 66.667 6.13 0.00 45.49 5.28
115 116 2.508663 GGTAAGCAGTCGCGGGTC 60.509 66.667 6.13 0.00 45.49 4.46
116 117 2.508663 GTAAGCAGTCGCGGGTCC 60.509 66.667 6.13 0.00 45.49 4.46
117 118 2.678934 TAAGCAGTCGCGGGTCCT 60.679 61.111 6.13 0.00 45.49 3.85
118 119 2.280552 TAAGCAGTCGCGGGTCCTT 61.281 57.895 6.13 7.23 45.49 3.36
119 120 2.501223 TAAGCAGTCGCGGGTCCTTG 62.501 60.000 6.13 0.00 45.49 3.61
171 172 4.069232 CTCCTTGCGCAGGGACGA 62.069 66.667 34.86 17.12 44.12 4.20
172 173 4.373116 TCCTTGCGCAGGGACGAC 62.373 66.667 34.86 0.00 44.12 4.34
177 178 4.814294 GCGCAGGGACGACGGATT 62.814 66.667 0.30 0.00 34.06 3.01
178 179 2.582498 CGCAGGGACGACGGATTC 60.582 66.667 0.00 0.00 34.06 2.52
204 205 4.521062 GACTGCGCGAGAGGCCAT 62.521 66.667 12.10 0.00 38.94 4.40
205 206 4.521062 ACTGCGCGAGAGGCCATC 62.521 66.667 12.10 0.77 38.94 3.51
218 219 2.892425 CCATCGCGGCTCCTTGTC 60.892 66.667 6.13 0.00 0.00 3.18
219 220 2.125552 CATCGCGGCTCCTTGTCA 60.126 61.111 6.13 0.00 0.00 3.58
220 221 2.169789 CATCGCGGCTCCTTGTCAG 61.170 63.158 6.13 0.00 0.00 3.51
221 222 3.376935 ATCGCGGCTCCTTGTCAGG 62.377 63.158 6.13 0.00 42.50 3.86
227 228 2.811317 CTCCTTGTCAGGCGCGTC 60.811 66.667 0.21 0.21 40.58 5.19
228 229 4.373116 TCCTTGTCAGGCGCGTCC 62.373 66.667 7.31 9.59 40.58 4.79
254 255 4.749310 CTCGGCCAACGCAGCTCT 62.749 66.667 2.24 0.00 43.86 4.09
255 256 4.742201 TCGGCCAACGCAGCTCTC 62.742 66.667 2.24 0.00 43.86 3.20
261 262 4.749310 AACGCAGCTCTCGGCCAG 62.749 66.667 2.24 0.00 43.05 4.85
279 280 3.577313 GGCTCGCTCCGCCAAATC 61.577 66.667 3.28 0.00 46.77 2.17
280 281 2.512515 GCTCGCTCCGCCAAATCT 60.513 61.111 0.00 0.00 0.00 2.40
281 282 2.817423 GCTCGCTCCGCCAAATCTG 61.817 63.158 0.00 0.00 0.00 2.90
282 283 2.125147 TCGCTCCGCCAAATCTGG 60.125 61.111 0.00 0.00 46.65 3.86
294 295 2.961062 CCAAATCTGGCAGGAAATAGGG 59.039 50.000 15.73 4.03 35.39 3.53
295 296 3.628257 CCAAATCTGGCAGGAAATAGGGT 60.628 47.826 15.73 0.00 35.39 4.34
296 297 3.584733 AATCTGGCAGGAAATAGGGTC 57.415 47.619 15.73 0.00 0.00 4.46
297 298 1.213296 TCTGGCAGGAAATAGGGTCC 58.787 55.000 15.73 0.00 35.17 4.46
298 299 0.918983 CTGGCAGGAAATAGGGTCCA 59.081 55.000 6.61 0.00 37.65 4.02
299 300 1.284785 CTGGCAGGAAATAGGGTCCAA 59.715 52.381 6.61 0.00 37.65 3.53
300 301 1.713647 TGGCAGGAAATAGGGTCCAAA 59.286 47.619 0.00 0.00 37.65 3.28
301 302 2.291540 TGGCAGGAAATAGGGTCCAAAG 60.292 50.000 0.00 0.00 37.65 2.77
302 303 2.291605 GGCAGGAAATAGGGTCCAAAGT 60.292 50.000 0.00 0.00 37.65 2.66
303 304 3.053917 GGCAGGAAATAGGGTCCAAAGTA 60.054 47.826 0.00 0.00 37.65 2.24
304 305 4.200092 GCAGGAAATAGGGTCCAAAGTAG 58.800 47.826 0.00 0.00 37.65 2.57
305 306 4.200092 CAGGAAATAGGGTCCAAAGTAGC 58.800 47.826 0.00 0.00 37.65 3.58
306 307 3.202373 AGGAAATAGGGTCCAAAGTAGCC 59.798 47.826 0.00 0.00 37.65 3.93
307 308 3.053917 GGAAATAGGGTCCAAAGTAGCCA 60.054 47.826 0.00 0.00 36.95 4.75
308 309 4.569015 GGAAATAGGGTCCAAAGTAGCCAA 60.569 45.833 0.00 0.00 36.95 4.52
309 310 4.668138 AATAGGGTCCAAAGTAGCCAAA 57.332 40.909 0.00 0.00 36.95 3.28
310 311 4.881157 ATAGGGTCCAAAGTAGCCAAAT 57.119 40.909 0.00 0.00 36.95 2.32
311 312 2.807676 AGGGTCCAAAGTAGCCAAATG 58.192 47.619 0.00 0.00 36.95 2.32
312 313 2.378547 AGGGTCCAAAGTAGCCAAATGA 59.621 45.455 0.00 0.00 36.95 2.57
313 314 3.011708 AGGGTCCAAAGTAGCCAAATGAT 59.988 43.478 0.00 0.00 36.95 2.45
314 315 3.769300 GGGTCCAAAGTAGCCAAATGATT 59.231 43.478 0.00 0.00 34.56 2.57
315 316 4.381932 GGGTCCAAAGTAGCCAAATGATTG 60.382 45.833 0.00 0.00 34.56 2.67
316 317 4.462483 GGTCCAAAGTAGCCAAATGATTGA 59.538 41.667 0.00 0.00 38.94 2.57
317 318 5.393461 GGTCCAAAGTAGCCAAATGATTGAG 60.393 44.000 0.00 0.00 38.94 3.02
318 319 5.415701 GTCCAAAGTAGCCAAATGATTGAGA 59.584 40.000 0.00 0.00 38.94 3.27
319 320 6.009589 TCCAAAGTAGCCAAATGATTGAGAA 58.990 36.000 0.00 0.00 38.94 2.87
320 321 6.493115 TCCAAAGTAGCCAAATGATTGAGAAA 59.507 34.615 0.00 0.00 38.94 2.52
321 322 6.810182 CCAAAGTAGCCAAATGATTGAGAAAG 59.190 38.462 0.00 0.00 38.94 2.62
322 323 7.309377 CCAAAGTAGCCAAATGATTGAGAAAGA 60.309 37.037 0.00 0.00 38.94 2.52
323 324 6.998968 AGTAGCCAAATGATTGAGAAAGAG 57.001 37.500 0.00 0.00 38.94 2.85
324 325 6.715280 AGTAGCCAAATGATTGAGAAAGAGA 58.285 36.000 0.00 0.00 38.94 3.10
325 326 7.170965 AGTAGCCAAATGATTGAGAAAGAGAA 58.829 34.615 0.00 0.00 38.94 2.87
326 327 7.833183 AGTAGCCAAATGATTGAGAAAGAGAAT 59.167 33.333 0.00 0.00 38.94 2.40
327 328 7.477945 AGCCAAATGATTGAGAAAGAGAATT 57.522 32.000 0.00 0.00 38.94 2.17
328 329 7.904205 AGCCAAATGATTGAGAAAGAGAATTT 58.096 30.769 0.00 0.00 38.94 1.82
329 330 9.028284 AGCCAAATGATTGAGAAAGAGAATTTA 57.972 29.630 0.00 0.00 38.94 1.40
330 331 9.813446 GCCAAATGATTGAGAAAGAGAATTTAT 57.187 29.630 0.00 0.00 38.94 1.40
345 346 9.981460 AAGAGAATTTATTGTCAATCTAACCCT 57.019 29.630 0.07 0.12 32.96 4.34
346 347 9.981460 AGAGAATTTATTGTCAATCTAACCCTT 57.019 29.630 0.07 0.00 32.96 3.95
352 353 8.519799 TTATTGTCAATCTAACCCTTTCATCC 57.480 34.615 0.07 0.00 0.00 3.51
353 354 5.512942 TGTCAATCTAACCCTTTCATCCA 57.487 39.130 0.00 0.00 0.00 3.41
354 355 5.886609 TGTCAATCTAACCCTTTCATCCAA 58.113 37.500 0.00 0.00 0.00 3.53
355 356 6.310941 TGTCAATCTAACCCTTTCATCCAAA 58.689 36.000 0.00 0.00 0.00 3.28
356 357 6.208599 TGTCAATCTAACCCTTTCATCCAAAC 59.791 38.462 0.00 0.00 0.00 2.93
357 358 6.208599 GTCAATCTAACCCTTTCATCCAAACA 59.791 38.462 0.00 0.00 0.00 2.83
358 359 6.208599 TCAATCTAACCCTTTCATCCAAACAC 59.791 38.462 0.00 0.00 0.00 3.32
359 360 4.403734 TCTAACCCTTTCATCCAAACACC 58.596 43.478 0.00 0.00 0.00 4.16
360 361 3.328535 AACCCTTTCATCCAAACACCT 57.671 42.857 0.00 0.00 0.00 4.00
361 362 2.876581 ACCCTTTCATCCAAACACCTC 58.123 47.619 0.00 0.00 0.00 3.85
362 363 2.447047 ACCCTTTCATCCAAACACCTCT 59.553 45.455 0.00 0.00 0.00 3.69
363 364 3.117131 ACCCTTTCATCCAAACACCTCTT 60.117 43.478 0.00 0.00 0.00 2.85
364 365 3.897505 CCCTTTCATCCAAACACCTCTTT 59.102 43.478 0.00 0.00 0.00 2.52
365 366 4.262164 CCCTTTCATCCAAACACCTCTTTG 60.262 45.833 0.00 0.00 0.00 2.77
366 367 4.584325 CCTTTCATCCAAACACCTCTTTGA 59.416 41.667 0.00 0.00 33.61 2.69
367 368 5.244626 CCTTTCATCCAAACACCTCTTTGAT 59.755 40.000 0.00 0.00 33.61 2.57
368 369 6.239402 CCTTTCATCCAAACACCTCTTTGATT 60.239 38.462 0.00 0.00 33.61 2.57
369 370 7.039784 CCTTTCATCCAAACACCTCTTTGATTA 60.040 37.037 0.00 0.00 33.61 1.75
370 371 7.452880 TTCATCCAAACACCTCTTTGATTAG 57.547 36.000 0.00 0.00 33.61 1.73
371 372 6.778821 TCATCCAAACACCTCTTTGATTAGA 58.221 36.000 0.00 0.00 33.61 2.10
372 373 6.881065 TCATCCAAACACCTCTTTGATTAGAG 59.119 38.462 0.00 0.00 41.10 2.43
373 374 6.187727 TCCAAACACCTCTTTGATTAGAGT 57.812 37.500 0.00 0.00 40.04 3.24
374 375 6.601332 TCCAAACACCTCTTTGATTAGAGTT 58.399 36.000 0.00 0.00 40.04 3.01
375 376 7.741785 TCCAAACACCTCTTTGATTAGAGTTA 58.258 34.615 0.00 0.00 40.04 2.24
376 377 7.878127 TCCAAACACCTCTTTGATTAGAGTTAG 59.122 37.037 0.00 0.00 40.04 2.34
377 378 7.661847 CCAAACACCTCTTTGATTAGAGTTAGT 59.338 37.037 0.00 0.00 40.04 2.24
378 379 9.057089 CAAACACCTCTTTGATTAGAGTTAGTT 57.943 33.333 0.00 0.00 40.04 2.24
379 380 8.834749 AACACCTCTTTGATTAGAGTTAGTTC 57.165 34.615 0.00 0.00 40.04 3.01
380 381 7.963532 ACACCTCTTTGATTAGAGTTAGTTCA 58.036 34.615 0.00 0.00 40.04 3.18
381 382 8.091449 ACACCTCTTTGATTAGAGTTAGTTCAG 58.909 37.037 0.00 0.00 40.04 3.02
382 383 7.547370 CACCTCTTTGATTAGAGTTAGTTCAGG 59.453 40.741 0.00 0.00 40.04 3.86
383 384 7.235812 ACCTCTTTGATTAGAGTTAGTTCAGGT 59.764 37.037 0.00 0.00 40.04 4.00
384 385 8.097662 CCTCTTTGATTAGAGTTAGTTCAGGTT 58.902 37.037 0.00 0.00 40.04 3.50
385 386 8.833231 TCTTTGATTAGAGTTAGTTCAGGTTG 57.167 34.615 0.00 0.00 0.00 3.77
386 387 7.878127 TCTTTGATTAGAGTTAGTTCAGGTTGG 59.122 37.037 0.00 0.00 0.00 3.77
387 388 5.488341 TGATTAGAGTTAGTTCAGGTTGGC 58.512 41.667 0.00 0.00 0.00 4.52
388 389 5.248477 TGATTAGAGTTAGTTCAGGTTGGCT 59.752 40.000 0.00 0.00 0.00 4.75
389 390 3.686916 AGAGTTAGTTCAGGTTGGCTC 57.313 47.619 0.00 0.00 0.00 4.70
390 391 2.972713 AGAGTTAGTTCAGGTTGGCTCA 59.027 45.455 0.00 0.00 0.00 4.26
391 392 3.007398 AGAGTTAGTTCAGGTTGGCTCAG 59.993 47.826 0.00 0.00 0.00 3.35
392 393 2.039084 AGTTAGTTCAGGTTGGCTCAGG 59.961 50.000 0.00 0.00 0.00 3.86
393 394 0.984230 TAGTTCAGGTTGGCTCAGGG 59.016 55.000 0.00 0.00 0.00 4.45
394 395 1.062488 AGTTCAGGTTGGCTCAGGGT 61.062 55.000 0.00 0.00 0.00 4.34
395 396 0.178990 GTTCAGGTTGGCTCAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
396 397 1.073284 GTTCAGGTTGGCTCAGGGTTA 59.927 52.381 0.00 0.00 0.00 2.85
397 398 0.984230 TCAGGTTGGCTCAGGGTTAG 59.016 55.000 0.00 0.00 0.00 2.34
398 399 0.984230 CAGGTTGGCTCAGGGTTAGA 59.016 55.000 0.00 0.00 0.00 2.10
399 400 1.351017 CAGGTTGGCTCAGGGTTAGAA 59.649 52.381 0.00 0.00 0.00 2.10
400 401 2.025887 CAGGTTGGCTCAGGGTTAGAAT 60.026 50.000 0.00 0.00 0.00 2.40
401 402 2.239907 AGGTTGGCTCAGGGTTAGAATC 59.760 50.000 0.00 0.00 0.00 2.52
402 403 2.239907 GGTTGGCTCAGGGTTAGAATCT 59.760 50.000 0.00 0.00 0.00 2.40
403 404 3.454812 GGTTGGCTCAGGGTTAGAATCTA 59.545 47.826 0.00 0.00 0.00 1.98
404 405 4.080526 GGTTGGCTCAGGGTTAGAATCTAA 60.081 45.833 0.00 0.00 0.00 2.10
405 406 4.755266 TGGCTCAGGGTTAGAATCTAAC 57.245 45.455 21.48 21.48 0.00 2.34
406 407 4.362677 TGGCTCAGGGTTAGAATCTAACT 58.637 43.478 26.42 10.32 0.00 2.24
407 408 4.406003 TGGCTCAGGGTTAGAATCTAACTC 59.594 45.833 26.42 24.35 0.00 3.01
408 409 4.651962 GGCTCAGGGTTAGAATCTAACTCT 59.348 45.833 25.42 25.42 38.68 3.24
409 410 5.834204 GGCTCAGGGTTAGAATCTAACTCTA 59.166 44.000 28.99 18.30 36.19 2.43
410 411 6.324254 GGCTCAGGGTTAGAATCTAACTCTAA 59.676 42.308 28.99 18.24 36.19 2.10
422 423 9.403583 AGAATCTAACTCTAACCTCTAACTGAG 57.596 37.037 0.00 0.00 42.30 3.35
423 424 7.576861 ATCTAACTCTAACCTCTAACTGAGC 57.423 40.000 0.00 0.00 41.35 4.26
424 425 6.723339 TCTAACTCTAACCTCTAACTGAGCT 58.277 40.000 0.00 0.00 41.35 4.09
425 426 7.859540 TCTAACTCTAACCTCTAACTGAGCTA 58.140 38.462 0.00 0.00 41.35 3.32
426 427 7.988599 TCTAACTCTAACCTCTAACTGAGCTAG 59.011 40.741 0.00 0.00 41.35 3.42
427 428 6.069705 ACTCTAACCTCTAACTGAGCTAGT 57.930 41.667 0.00 0.00 42.89 2.57
428 429 7.197901 ACTCTAACCTCTAACTGAGCTAGTA 57.802 40.000 0.00 0.00 39.18 1.82
429 430 7.808218 ACTCTAACCTCTAACTGAGCTAGTAT 58.192 38.462 0.00 0.00 39.18 2.12
430 431 7.935210 ACTCTAACCTCTAACTGAGCTAGTATC 59.065 40.741 0.00 0.00 39.18 2.24
431 432 7.225725 TCTAACCTCTAACTGAGCTAGTATCC 58.774 42.308 0.00 0.00 39.18 2.59
432 433 5.390087 ACCTCTAACTGAGCTAGTATCCA 57.610 43.478 0.00 0.00 39.18 3.41
433 434 5.767670 ACCTCTAACTGAGCTAGTATCCAA 58.232 41.667 0.00 0.00 39.18 3.53
434 435 6.195700 ACCTCTAACTGAGCTAGTATCCAAA 58.804 40.000 0.00 0.00 39.18 3.28
435 436 6.097129 ACCTCTAACTGAGCTAGTATCCAAAC 59.903 42.308 0.00 0.00 39.18 2.93
436 437 6.096987 CCTCTAACTGAGCTAGTATCCAAACA 59.903 42.308 0.00 0.00 39.18 2.83
437 438 7.101652 TCTAACTGAGCTAGTATCCAAACAG 57.898 40.000 0.00 0.00 39.18 3.16
438 439 4.744795 ACTGAGCTAGTATCCAAACAGG 57.255 45.455 0.00 0.00 38.04 4.00
439 440 3.452627 ACTGAGCTAGTATCCAAACAGGG 59.547 47.826 0.00 0.00 38.04 4.45
440 441 2.170607 TGAGCTAGTATCCAAACAGGGC 59.829 50.000 0.00 0.00 38.24 5.19
441 442 2.436173 GAGCTAGTATCCAAACAGGGCT 59.564 50.000 0.00 0.00 38.24 5.19
450 451 2.035632 CCAAACAGGGCTTTTGTACCA 58.964 47.619 0.00 0.00 32.92 3.25
455 456 1.001815 CAGGGCTTTTGTACCAACACG 60.002 52.381 0.00 0.00 34.61 4.49
486 487 1.879380 CAGCATTTTCCGAGGACACAA 59.121 47.619 0.00 0.00 0.00 3.33
487 488 2.095567 CAGCATTTTCCGAGGACACAAG 60.096 50.000 0.00 0.00 0.00 3.16
488 489 1.401539 GCATTTTCCGAGGACACAAGC 60.402 52.381 0.00 0.00 0.00 4.01
489 490 1.135972 CATTTTCCGAGGACACAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
490 491 0.105224 TTTTCCGAGGACACAAGCGA 59.895 50.000 0.00 0.00 0.00 4.93
491 492 0.319555 TTTCCGAGGACACAAGCGAG 60.320 55.000 0.00 0.00 0.00 5.03
492 493 2.125912 CCGAGGACACAAGCGAGG 60.126 66.667 0.00 0.00 0.00 4.63
493 494 2.651361 CGAGGACACAAGCGAGGT 59.349 61.111 0.00 0.00 0.00 3.85
545 546 1.082104 GCAAACAGGTTTCGCTCGG 60.082 57.895 10.16 0.00 0.00 4.63
1014 1015 1.464376 CCTCCATGGCGTCCGTCTAT 61.464 60.000 6.96 0.00 0.00 1.98
1025 1026 3.292936 CGTCTATACCGCGCCCCT 61.293 66.667 0.00 0.00 0.00 4.79
1586 1654 1.614903 TGGATGAGGCTTGCACAAAAG 59.385 47.619 0.00 0.00 0.00 2.27
1610 1679 7.607250 AGGCACCGTTATTGATTTTTCATTAA 58.393 30.769 0.00 0.00 0.00 1.40
1776 1852 7.506114 TGAAGAAATTTACCTAGTGCGGATAT 58.494 34.615 0.00 0.00 0.00 1.63
1876 1952 4.793201 ACTTAAACTGGCTTCTTTGGAGT 58.207 39.130 0.00 0.00 0.00 3.85
1886 1962 4.518970 GGCTTCTTTGGAGTGACACATTTA 59.481 41.667 8.59 0.00 0.00 1.40
1890 1966 7.653311 GCTTCTTTGGAGTGACACATTTATTTT 59.347 33.333 8.59 0.00 0.00 1.82
1891 1967 9.533253 CTTCTTTGGAGTGACACATTTATTTTT 57.467 29.630 8.59 0.00 0.00 1.94
1952 2111 6.758593 TCGTGTGTTGAAACTACTAATGTC 57.241 37.500 0.00 0.00 0.00 3.06
1971 2130 4.647611 TGTCGTGTTAGGTCAATCCATTT 58.352 39.130 0.00 0.00 39.02 2.32
2041 2223 0.967662 CCATGCCAACAACATGTGGA 59.032 50.000 7.39 0.00 42.74 4.02
2325 2558 9.764363 GATCATATATGAGTTACAGTTTGGACA 57.236 33.333 19.73 0.00 40.64 4.02
2344 2577 4.261614 GGACAACCTTTCTGAAATCACACC 60.262 45.833 2.88 0.97 0.00 4.16
2363 2596 4.012374 CACCACTAAGCTTCATGATTGGT 58.988 43.478 0.00 2.38 36.19 3.67
2484 2718 3.957497 TGTTTTTCATTAGGTGTGCCAGT 59.043 39.130 0.00 0.00 37.19 4.00
2485 2719 4.404073 TGTTTTTCATTAGGTGTGCCAGTT 59.596 37.500 0.00 0.00 37.19 3.16
2860 3096 6.320171 CAAATATCTGCTCTTTTGTCTGTGG 58.680 40.000 0.00 0.00 0.00 4.17
3099 3335 2.171237 CCATCAAGGCATACTCTCACCA 59.829 50.000 0.00 0.00 0.00 4.17
3114 3350 6.122277 ACTCTCACCAAAAATTTCTCTCACA 58.878 36.000 0.00 0.00 0.00 3.58
3202 3439 7.962964 TGGTAACAGAGTGATTAACTTTCAG 57.037 36.000 0.00 0.00 46.17 3.02
3374 3614 6.009589 TCTGCTTGGAGGATTAAATTGTTGA 58.990 36.000 0.00 0.00 0.00 3.18
3616 3856 7.385205 TGAATGCTTTCAAGTAGAGTAACTGAC 59.615 37.037 12.27 0.00 38.90 3.51
3649 3889 9.716531 CATGATACCATGTGTAGATTGATACTT 57.283 33.333 0.00 0.00 43.90 2.24
3753 3996 6.043127 TGGATGCAGCTTATATTAGAGACCAA 59.957 38.462 0.22 0.00 0.00 3.67
3825 4068 8.691661 ATTTTTGTGTTGTTAGACTCTATGGT 57.308 30.769 0.00 0.00 0.00 3.55
3832 4075 8.709646 GTGTTGTTAGACTCTATGGTTACAAAG 58.290 37.037 3.02 0.00 0.00 2.77
3849 4092 9.983804 GGTTACAAAGTAGCAACTATGAAATAC 57.016 33.333 0.00 0.00 33.75 1.89
4017 4260 3.656559 AGCAAAACACCATGCATTCTTC 58.343 40.909 0.00 0.00 44.95 2.87
4169 4428 6.170675 CTGTAGCCTAACAGCTTAAAGTTG 57.829 41.667 0.00 0.00 41.41 3.16
4736 5054 1.274728 CTCCAGGGTGTTCACTCTGAG 59.725 57.143 27.84 19.79 0.00 3.35
4738 5056 1.342074 CAGGGTGTTCACTCTGAGGA 58.658 55.000 23.55 0.81 0.00 3.71
4752 5070 0.179048 TGAGGACGCCTATGCCATTG 60.179 55.000 0.00 0.00 31.76 2.82
4789 5107 6.531503 TGTTAGTTGGAAATTTTGGTCACA 57.468 33.333 0.00 0.00 0.00 3.58
4934 5307 8.059798 ACTTGGATTCTTAAGAATGACATTGG 57.940 34.615 30.65 21.20 44.14 3.16
5236 5610 3.541996 TGCTGACTGACACTTCAAAGA 57.458 42.857 0.00 0.00 0.00 2.52
5450 5826 9.841880 TTATATGCATCTTCGAGTTATGTAGTC 57.158 33.333 0.19 0.00 0.00 2.59
5582 5960 4.799564 TGATTGTTTGAGTTAATGGCCC 57.200 40.909 0.00 0.00 0.00 5.80
5631 6009 1.047034 ATGGCCACTAGTCCGTACCC 61.047 60.000 8.16 0.00 0.00 3.69
5688 6066 0.319900 AAGTGTAGCTGTCCTGTGCG 60.320 55.000 0.00 0.00 0.00 5.34
5729 6107 5.187967 ACCTGATCTGACCTAGTTTTGGTAG 59.812 44.000 0.38 0.00 38.03 3.18
6025 6403 2.483013 GGTCCAGCTGGTTTGAAAAACC 60.483 50.000 31.58 23.81 40.67 3.27
6339 6717 3.380479 TCACAGTCCTCACCTAAAACG 57.620 47.619 0.00 0.00 0.00 3.60
6453 6831 1.805871 GCTCAGCAGATTCCGAGGAAG 60.806 57.143 10.56 0.00 37.56 3.46
6650 7028 9.709495 TTTTCTTTAAATGTTGCTAATCTGCAT 57.291 25.926 0.00 0.00 42.96 3.96
6889 7269 4.210537 CACTGAATCGTTTTCGTACCACTT 59.789 41.667 0.00 0.00 44.46 3.16
7013 7394 3.334691 TGCCGAGTCACATTAAGAAAGG 58.665 45.455 0.00 0.00 0.00 3.11
7308 7692 9.726232 GAAGTTCTTAGTTTACAACGGAAATTT 57.274 29.630 0.00 0.00 32.63 1.82
7728 8115 8.375506 TGGTCATGTAGAGTAATTGAGAGTTTT 58.624 33.333 0.00 0.00 0.00 2.43
7831 8218 9.929722 TTATTTCAGTTTTACGATGATGCATAC 57.070 29.630 0.00 0.00 0.00 2.39
7919 8919 8.165239 TGCCACACATAATAAAATGATCTACC 57.835 34.615 0.00 0.00 0.00 3.18
8049 9073 9.784531 AATGATACCATTACTAACTCAATCCTG 57.215 33.333 0.00 0.00 40.95 3.86
8086 9110 1.227823 CCAGGTTGTCTTCCGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
8249 9273 2.136026 AGGTATAAGGGGCAAAGGAGG 58.864 52.381 0.00 0.00 0.00 4.30
8661 9685 6.367422 TGTTCATTCAAAAGTGGTTTGTGTTC 59.633 34.615 0.00 0.00 45.83 3.18
8774 9798 1.010580 CAGTACAAACACACGCCACA 58.989 50.000 0.00 0.00 0.00 4.17
8806 9830 4.269523 GCACACACCCAGGGCAGA 62.270 66.667 4.91 0.00 0.00 4.26
8846 9875 1.691219 CAACACCACCCCTAGCCAT 59.309 57.895 0.00 0.00 0.00 4.40
8877 9906 6.399639 TGAAGCTACATATGACGAACCATA 57.600 37.500 10.38 0.00 33.98 2.74
8958 9987 0.042731 AGGATCAGAGTTTCCCCCGA 59.957 55.000 0.00 0.00 32.05 5.14
9087 10119 4.619227 CCACCGAACGCCACACCT 62.619 66.667 0.00 0.00 0.00 4.00
9147 10179 4.335647 CCAAGGCACGGGCTCTGT 62.336 66.667 10.74 0.00 37.50 3.41
9257 10289 0.670854 AAAGAGACGAGCGGAAAGGC 60.671 55.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.642542 GGACGGGAGCGCGGATAC 62.643 72.222 8.83 0.00 0.00 2.24
32 33 1.842381 ATAGGGCGGGGCTGCTTATC 61.842 60.000 0.00 0.00 34.52 1.75
33 34 1.842381 GATAGGGCGGGGCTGCTTAT 61.842 60.000 0.00 2.20 34.52 1.73
34 35 2.447765 ATAGGGCGGGGCTGCTTA 60.448 61.111 0.00 0.00 34.52 3.09
35 36 3.878667 GATAGGGCGGGGCTGCTT 61.879 66.667 0.00 0.00 34.52 3.91
38 39 3.631046 GAGGATAGGGCGGGGCTG 61.631 72.222 0.00 0.00 0.00 4.85
39 40 4.964241 GGAGGATAGGGCGGGGCT 62.964 72.222 0.00 0.00 0.00 5.19
41 42 3.872487 ATGGGAGGATAGGGCGGGG 62.872 68.421 0.00 0.00 0.00 5.73
42 43 1.842381 GAATGGGAGGATAGGGCGGG 61.842 65.000 0.00 0.00 0.00 6.13
43 44 1.679898 GAATGGGAGGATAGGGCGG 59.320 63.158 0.00 0.00 0.00 6.13
44 45 1.127567 TGGAATGGGAGGATAGGGCG 61.128 60.000 0.00 0.00 0.00 6.13
45 46 1.149101 TTGGAATGGGAGGATAGGGC 58.851 55.000 0.00 0.00 0.00 5.19
46 47 2.135189 TGTTGGAATGGGAGGATAGGG 58.865 52.381 0.00 0.00 0.00 3.53
47 48 2.158608 GGTGTTGGAATGGGAGGATAGG 60.159 54.545 0.00 0.00 0.00 2.57
48 49 2.158608 GGGTGTTGGAATGGGAGGATAG 60.159 54.545 0.00 0.00 0.00 2.08
49 50 1.850345 GGGTGTTGGAATGGGAGGATA 59.150 52.381 0.00 0.00 0.00 2.59
50 51 0.631212 GGGTGTTGGAATGGGAGGAT 59.369 55.000 0.00 0.00 0.00 3.24
51 52 0.477597 AGGGTGTTGGAATGGGAGGA 60.478 55.000 0.00 0.00 0.00 3.71
52 53 0.034089 GAGGGTGTTGGAATGGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
53 54 0.392998 CGAGGGTGTTGGAATGGGAG 60.393 60.000 0.00 0.00 0.00 4.30
54 55 1.131303 ACGAGGGTGTTGGAATGGGA 61.131 55.000 0.00 0.00 0.00 4.37
55 56 0.676782 GACGAGGGTGTTGGAATGGG 60.677 60.000 0.00 0.00 0.00 4.00
56 57 0.324943 AGACGAGGGTGTTGGAATGG 59.675 55.000 0.00 0.00 0.00 3.16
57 58 1.676014 GGAGACGAGGGTGTTGGAATG 60.676 57.143 0.00 0.00 0.00 2.67
58 59 0.613777 GGAGACGAGGGTGTTGGAAT 59.386 55.000 0.00 0.00 0.00 3.01
59 60 1.477685 GGGAGACGAGGGTGTTGGAA 61.478 60.000 0.00 0.00 0.00 3.53
60 61 1.911766 GGGAGACGAGGGTGTTGGA 60.912 63.158 0.00 0.00 0.00 3.53
61 62 2.663196 GGGAGACGAGGGTGTTGG 59.337 66.667 0.00 0.00 0.00 3.77
62 63 2.663196 GGGGAGACGAGGGTGTTG 59.337 66.667 0.00 0.00 0.00 3.33
63 64 2.995574 CGGGGAGACGAGGGTGTT 60.996 66.667 0.00 0.00 35.47 3.32
97 98 4.430765 ACCCGCGACTGCTTACCG 62.431 66.667 8.23 0.00 39.65 4.02
98 99 2.508663 GACCCGCGACTGCTTACC 60.509 66.667 8.23 0.00 39.65 2.85
99 100 2.502692 AAGGACCCGCGACTGCTTAC 62.503 60.000 8.23 0.00 39.65 2.34
100 101 2.280552 AAGGACCCGCGACTGCTTA 61.281 57.895 8.23 0.00 39.65 3.09
101 102 3.626924 AAGGACCCGCGACTGCTT 61.627 61.111 8.23 5.73 39.65 3.91
102 103 4.379243 CAAGGACCCGCGACTGCT 62.379 66.667 8.23 0.00 39.65 4.24
160 161 4.814294 AATCCGTCGTCCCTGCGC 62.814 66.667 0.00 0.00 0.00 6.09
161 162 2.582498 GAATCCGTCGTCCCTGCG 60.582 66.667 0.00 0.00 0.00 5.18
162 163 2.582498 CGAATCCGTCGTCCCTGC 60.582 66.667 0.00 0.00 45.09 4.85
187 188 4.521062 ATGGCCTCTCGCGCAGTC 62.521 66.667 8.75 0.00 38.94 3.51
188 189 4.521062 GATGGCCTCTCGCGCAGT 62.521 66.667 8.75 0.00 38.94 4.40
201 202 2.892425 GACAAGGAGCCGCGATGG 60.892 66.667 8.23 0.00 42.50 3.51
202 203 2.125552 TGACAAGGAGCCGCGATG 60.126 61.111 8.23 0.00 0.00 3.84
203 204 2.185350 CTGACAAGGAGCCGCGAT 59.815 61.111 8.23 0.00 0.00 4.58
237 238 4.749310 AGAGCTGCGTTGGCCGAG 62.749 66.667 0.00 0.00 39.56 4.63
238 239 4.742201 GAGAGCTGCGTTGGCCGA 62.742 66.667 0.00 0.00 39.56 5.54
244 245 4.749310 CTGGCCGAGAGCTGCGTT 62.749 66.667 0.00 0.00 43.05 4.84
274 275 3.633986 GACCCTATTTCCTGCCAGATTTG 59.366 47.826 0.00 0.00 0.00 2.32
275 276 3.373110 GGACCCTATTTCCTGCCAGATTT 60.373 47.826 0.00 0.00 0.00 2.17
276 277 2.175715 GGACCCTATTTCCTGCCAGATT 59.824 50.000 0.00 0.00 0.00 2.40
277 278 1.777272 GGACCCTATTTCCTGCCAGAT 59.223 52.381 0.00 0.00 0.00 2.90
278 279 1.213296 GGACCCTATTTCCTGCCAGA 58.787 55.000 0.00 0.00 0.00 3.86
279 280 0.918983 TGGACCCTATTTCCTGCCAG 59.081 55.000 0.00 0.00 33.84 4.85
280 281 1.377690 TTGGACCCTATTTCCTGCCA 58.622 50.000 0.00 0.00 33.84 4.92
281 282 2.291605 ACTTTGGACCCTATTTCCTGCC 60.292 50.000 0.00 0.00 33.84 4.85
282 283 3.087370 ACTTTGGACCCTATTTCCTGC 57.913 47.619 0.00 0.00 33.84 4.85
283 284 4.200092 GCTACTTTGGACCCTATTTCCTG 58.800 47.826 0.00 0.00 33.84 3.86
284 285 3.202373 GGCTACTTTGGACCCTATTTCCT 59.798 47.826 0.00 0.00 33.84 3.36
285 286 3.053917 TGGCTACTTTGGACCCTATTTCC 60.054 47.826 0.00 0.00 0.00 3.13
286 287 4.230745 TGGCTACTTTGGACCCTATTTC 57.769 45.455 0.00 0.00 0.00 2.17
287 288 4.668138 TTGGCTACTTTGGACCCTATTT 57.332 40.909 0.00 0.00 0.00 1.40
288 289 4.668138 TTTGGCTACTTTGGACCCTATT 57.332 40.909 0.00 0.00 0.00 1.73
289 290 4.229582 TCATTTGGCTACTTTGGACCCTAT 59.770 41.667 0.00 0.00 0.00 2.57
290 291 3.589735 TCATTTGGCTACTTTGGACCCTA 59.410 43.478 0.00 0.00 0.00 3.53
291 292 2.378547 TCATTTGGCTACTTTGGACCCT 59.621 45.455 0.00 0.00 0.00 4.34
292 293 2.802719 TCATTTGGCTACTTTGGACCC 58.197 47.619 0.00 0.00 0.00 4.46
293 294 4.462483 TCAATCATTTGGCTACTTTGGACC 59.538 41.667 0.00 0.00 33.44 4.46
294 295 5.415701 TCTCAATCATTTGGCTACTTTGGAC 59.584 40.000 0.00 0.00 33.44 4.02
295 296 5.569355 TCTCAATCATTTGGCTACTTTGGA 58.431 37.500 0.00 0.00 33.44 3.53
296 297 5.902613 TCTCAATCATTTGGCTACTTTGG 57.097 39.130 0.00 0.00 33.44 3.28
297 298 7.596494 TCTTTCTCAATCATTTGGCTACTTTG 58.404 34.615 0.00 0.00 33.44 2.77
298 299 7.667219 TCTCTTTCTCAATCATTTGGCTACTTT 59.333 33.333 0.00 0.00 33.44 2.66
299 300 7.170965 TCTCTTTCTCAATCATTTGGCTACTT 58.829 34.615 0.00 0.00 33.44 2.24
300 301 6.715280 TCTCTTTCTCAATCATTTGGCTACT 58.285 36.000 0.00 0.00 33.44 2.57
301 302 6.992063 TCTCTTTCTCAATCATTTGGCTAC 57.008 37.500 0.00 0.00 33.44 3.58
302 303 8.585471 AATTCTCTTTCTCAATCATTTGGCTA 57.415 30.769 0.00 0.00 33.44 3.93
303 304 7.477945 AATTCTCTTTCTCAATCATTTGGCT 57.522 32.000 0.00 0.00 33.44 4.75
304 305 9.813446 ATAAATTCTCTTTCTCAATCATTTGGC 57.187 29.630 0.00 0.00 33.44 4.52
319 320 9.981460 AGGGTTAGATTGACAATAAATTCTCTT 57.019 29.630 0.00 0.00 0.00 2.85
320 321 9.981460 AAGGGTTAGATTGACAATAAATTCTCT 57.019 29.630 0.00 0.00 0.00 3.10
326 327 8.966868 GGATGAAAGGGTTAGATTGACAATAAA 58.033 33.333 0.00 0.00 0.00 1.40
327 328 8.112822 TGGATGAAAGGGTTAGATTGACAATAA 58.887 33.333 0.00 0.00 0.00 1.40
328 329 7.638444 TGGATGAAAGGGTTAGATTGACAATA 58.362 34.615 0.00 0.00 0.00 1.90
329 330 6.493166 TGGATGAAAGGGTTAGATTGACAAT 58.507 36.000 0.00 0.00 0.00 2.71
330 331 5.886609 TGGATGAAAGGGTTAGATTGACAA 58.113 37.500 0.00 0.00 0.00 3.18
331 332 5.512942 TGGATGAAAGGGTTAGATTGACA 57.487 39.130 0.00 0.00 0.00 3.58
332 333 6.208599 TGTTTGGATGAAAGGGTTAGATTGAC 59.791 38.462 0.00 0.00 0.00 3.18
333 334 6.208599 GTGTTTGGATGAAAGGGTTAGATTGA 59.791 38.462 0.00 0.00 0.00 2.57
334 335 6.389906 GTGTTTGGATGAAAGGGTTAGATTG 58.610 40.000 0.00 0.00 0.00 2.67
335 336 5.480422 GGTGTTTGGATGAAAGGGTTAGATT 59.520 40.000 0.00 0.00 0.00 2.40
336 337 5.016831 GGTGTTTGGATGAAAGGGTTAGAT 58.983 41.667 0.00 0.00 0.00 1.98
337 338 4.105697 AGGTGTTTGGATGAAAGGGTTAGA 59.894 41.667 0.00 0.00 0.00 2.10
338 339 4.407365 AGGTGTTTGGATGAAAGGGTTAG 58.593 43.478 0.00 0.00 0.00 2.34
339 340 4.105697 AGAGGTGTTTGGATGAAAGGGTTA 59.894 41.667 0.00 0.00 0.00 2.85
340 341 3.117131 AGAGGTGTTTGGATGAAAGGGTT 60.117 43.478 0.00 0.00 0.00 4.11
341 342 2.447047 AGAGGTGTTTGGATGAAAGGGT 59.553 45.455 0.00 0.00 0.00 4.34
342 343 3.160679 AGAGGTGTTTGGATGAAAGGG 57.839 47.619 0.00 0.00 0.00 3.95
343 344 4.584325 TCAAAGAGGTGTTTGGATGAAAGG 59.416 41.667 0.24 0.00 37.89 3.11
344 345 5.772825 TCAAAGAGGTGTTTGGATGAAAG 57.227 39.130 0.24 0.00 37.89 2.62
345 346 6.729690 AATCAAAGAGGTGTTTGGATGAAA 57.270 33.333 0.24 0.00 37.89 2.69
346 347 7.230747 TCTAATCAAAGAGGTGTTTGGATGAA 58.769 34.615 0.24 0.00 37.89 2.57
347 348 6.778821 TCTAATCAAAGAGGTGTTTGGATGA 58.221 36.000 0.24 0.00 37.89 2.92
348 349 6.656693 ACTCTAATCAAAGAGGTGTTTGGATG 59.343 38.462 5.90 0.00 46.11 3.51
349 350 6.784031 ACTCTAATCAAAGAGGTGTTTGGAT 58.216 36.000 5.90 0.00 46.11 3.41
350 351 6.187727 ACTCTAATCAAAGAGGTGTTTGGA 57.812 37.500 5.90 0.00 46.11 3.53
351 352 6.884280 AACTCTAATCAAAGAGGTGTTTGG 57.116 37.500 5.90 0.00 46.11 3.28
352 353 8.608844 ACTAACTCTAATCAAAGAGGTGTTTG 57.391 34.615 1.71 0.00 43.46 2.93
353 354 9.274206 GAACTAACTCTAATCAAAGAGGTGTTT 57.726 33.333 1.71 0.00 43.46 2.83
354 355 8.429641 TGAACTAACTCTAATCAAAGAGGTGTT 58.570 33.333 1.71 4.59 43.46 3.32
355 356 7.963532 TGAACTAACTCTAATCAAAGAGGTGT 58.036 34.615 1.71 0.00 43.46 4.16
356 357 7.547370 CCTGAACTAACTCTAATCAAAGAGGTG 59.453 40.741 1.71 0.00 43.46 4.00
357 358 7.235812 ACCTGAACTAACTCTAATCAAAGAGGT 59.764 37.037 5.90 1.45 46.11 3.85
358 359 7.616313 ACCTGAACTAACTCTAATCAAAGAGG 58.384 38.462 5.90 0.00 46.11 3.69
360 361 7.878127 CCAACCTGAACTAACTCTAATCAAAGA 59.122 37.037 0.00 0.00 0.00 2.52
361 362 7.361286 GCCAACCTGAACTAACTCTAATCAAAG 60.361 40.741 0.00 0.00 0.00 2.77
362 363 6.430000 GCCAACCTGAACTAACTCTAATCAAA 59.570 38.462 0.00 0.00 0.00 2.69
363 364 5.938125 GCCAACCTGAACTAACTCTAATCAA 59.062 40.000 0.00 0.00 0.00 2.57
364 365 5.248477 AGCCAACCTGAACTAACTCTAATCA 59.752 40.000 0.00 0.00 0.00 2.57
365 366 5.735766 AGCCAACCTGAACTAACTCTAATC 58.264 41.667 0.00 0.00 0.00 1.75
366 367 5.248477 TGAGCCAACCTGAACTAACTCTAAT 59.752 40.000 0.00 0.00 0.00 1.73
367 368 4.591498 TGAGCCAACCTGAACTAACTCTAA 59.409 41.667 0.00 0.00 0.00 2.10
368 369 4.157246 TGAGCCAACCTGAACTAACTCTA 58.843 43.478 0.00 0.00 0.00 2.43
369 370 2.972713 TGAGCCAACCTGAACTAACTCT 59.027 45.455 0.00 0.00 0.00 3.24
370 371 3.330267 CTGAGCCAACCTGAACTAACTC 58.670 50.000 0.00 0.00 0.00 3.01
371 372 2.039084 CCTGAGCCAACCTGAACTAACT 59.961 50.000 0.00 0.00 0.00 2.24
372 373 2.427506 CCTGAGCCAACCTGAACTAAC 58.572 52.381 0.00 0.00 0.00 2.34
373 374 1.351017 CCCTGAGCCAACCTGAACTAA 59.649 52.381 0.00 0.00 0.00 2.24
374 375 0.984230 CCCTGAGCCAACCTGAACTA 59.016 55.000 0.00 0.00 0.00 2.24
375 376 1.062488 ACCCTGAGCCAACCTGAACT 61.062 55.000 0.00 0.00 0.00 3.01
376 377 0.178990 AACCCTGAGCCAACCTGAAC 60.179 55.000 0.00 0.00 0.00 3.18
377 378 1.351017 CTAACCCTGAGCCAACCTGAA 59.649 52.381 0.00 0.00 0.00 3.02
378 379 0.984230 CTAACCCTGAGCCAACCTGA 59.016 55.000 0.00 0.00 0.00 3.86
379 380 0.984230 TCTAACCCTGAGCCAACCTG 59.016 55.000 0.00 0.00 0.00 4.00
380 381 1.742308 TTCTAACCCTGAGCCAACCT 58.258 50.000 0.00 0.00 0.00 3.50
381 382 2.239907 AGATTCTAACCCTGAGCCAACC 59.760 50.000 0.00 0.00 0.00 3.77
382 383 3.636153 AGATTCTAACCCTGAGCCAAC 57.364 47.619 0.00 0.00 0.00 3.77
383 384 4.783227 AGTTAGATTCTAACCCTGAGCCAA 59.217 41.667 25.81 0.00 0.00 4.52
384 385 4.362677 AGTTAGATTCTAACCCTGAGCCA 58.637 43.478 25.81 0.00 0.00 4.75
385 386 4.651962 AGAGTTAGATTCTAACCCTGAGCC 59.348 45.833 25.81 11.39 0.00 4.70
386 387 5.862678 AGAGTTAGATTCTAACCCTGAGC 57.137 43.478 25.81 12.87 0.00 4.26
396 397 9.403583 CTCAGTTAGAGGTTAGAGTTAGATTCT 57.596 37.037 0.00 0.00 40.84 2.40
397 398 8.132995 GCTCAGTTAGAGGTTAGAGTTAGATTC 58.867 40.741 0.00 0.00 44.86 2.52
398 399 8.002984 GCTCAGTTAGAGGTTAGAGTTAGATT 57.997 38.462 0.00 0.00 44.86 2.40
399 400 7.576861 GCTCAGTTAGAGGTTAGAGTTAGAT 57.423 40.000 0.00 0.00 44.86 1.98
411 412 6.096987 TGTTTGGATACTAGCTCAGTTAGAGG 59.903 42.308 1.97 0.00 40.71 3.69
412 413 7.101652 TGTTTGGATACTAGCTCAGTTAGAG 57.898 40.000 1.97 0.00 42.46 2.43
413 414 6.096987 CCTGTTTGGATACTAGCTCAGTTAGA 59.903 42.308 1.97 0.00 36.98 2.10
414 415 6.276847 CCTGTTTGGATACTAGCTCAGTTAG 58.723 44.000 0.00 0.00 36.98 2.34
415 416 5.128827 CCCTGTTTGGATACTAGCTCAGTTA 59.871 44.000 0.00 0.00 36.98 2.24
416 417 4.080863 CCCTGTTTGGATACTAGCTCAGTT 60.081 45.833 0.00 0.00 36.98 3.16
417 418 3.452627 CCCTGTTTGGATACTAGCTCAGT 59.547 47.826 0.00 0.00 38.62 3.41
418 419 3.742640 GCCCTGTTTGGATACTAGCTCAG 60.743 52.174 0.00 0.00 38.35 3.35
419 420 2.170607 GCCCTGTTTGGATACTAGCTCA 59.829 50.000 0.00 0.00 38.35 4.26
420 421 2.436173 AGCCCTGTTTGGATACTAGCTC 59.564 50.000 0.00 0.00 38.35 4.09
421 422 2.482494 AGCCCTGTTTGGATACTAGCT 58.518 47.619 0.00 0.00 38.35 3.32
422 423 3.283259 AAGCCCTGTTTGGATACTAGC 57.717 47.619 0.00 0.00 38.35 3.42
423 424 5.010282 ACAAAAGCCCTGTTTGGATACTAG 58.990 41.667 2.34 0.00 39.74 2.57
424 425 4.993028 ACAAAAGCCCTGTTTGGATACTA 58.007 39.130 2.34 0.00 39.74 1.82
425 426 3.844640 ACAAAAGCCCTGTTTGGATACT 58.155 40.909 2.34 0.00 39.74 2.12
426 427 4.082408 GGTACAAAAGCCCTGTTTGGATAC 60.082 45.833 0.00 0.00 39.74 2.24
427 428 4.083565 GGTACAAAAGCCCTGTTTGGATA 58.916 43.478 0.00 0.00 39.74 2.59
428 429 2.897326 GGTACAAAAGCCCTGTTTGGAT 59.103 45.455 0.00 0.00 39.74 3.41
429 430 2.312390 GGTACAAAAGCCCTGTTTGGA 58.688 47.619 0.00 0.00 39.74 3.53
430 431 2.035632 TGGTACAAAAGCCCTGTTTGG 58.964 47.619 0.00 0.00 39.74 3.28
450 451 2.055299 CTGTACCCCTCACCGTGTT 58.945 57.895 0.00 0.00 0.00 3.32
455 456 2.092323 GAAAATGCTGTACCCCTCACC 58.908 52.381 0.00 0.00 0.00 4.02
461 462 1.065709 TCCTCGGAAAATGCTGTACCC 60.066 52.381 0.00 0.00 0.00 3.69
464 465 2.037902 TGTGTCCTCGGAAAATGCTGTA 59.962 45.455 0.00 0.00 0.00 2.74
486 487 1.797211 GCGGCTAGATGTACCTCGCT 61.797 60.000 0.00 0.00 38.82 4.93
487 488 1.371881 GCGGCTAGATGTACCTCGC 60.372 63.158 0.00 0.00 35.12 5.03
488 489 0.384309 TTGCGGCTAGATGTACCTCG 59.616 55.000 0.00 0.00 0.00 4.63
489 490 2.596904 TTTGCGGCTAGATGTACCTC 57.403 50.000 0.00 0.00 0.00 3.85
490 491 3.007635 GTTTTTGCGGCTAGATGTACCT 58.992 45.455 0.00 0.00 0.00 3.08
491 492 3.007635 AGTTTTTGCGGCTAGATGTACC 58.992 45.455 0.00 0.00 0.00 3.34
492 493 3.241995 CGAGTTTTTGCGGCTAGATGTAC 60.242 47.826 0.00 0.00 0.00 2.90
493 494 2.927477 CGAGTTTTTGCGGCTAGATGTA 59.073 45.455 0.00 0.00 0.00 2.29
1586 1654 7.329717 TGTTAATGAAAAATCAATAACGGTGCC 59.670 33.333 10.50 0.00 38.27 5.01
1610 1679 5.240623 ACGTTCCATGTTTGTAATCACATGT 59.759 36.000 10.54 0.00 46.05 3.21
1890 1966 9.424319 GACTAAGTCACATTGATACTTGAGAAA 57.576 33.333 14.47 0.03 35.23 2.52
1891 1967 7.755373 CGACTAAGTCACATTGATACTTGAGAA 59.245 37.037 14.47 0.29 35.23 2.87
1971 2130 4.141274 ACATGTTATGGTGCTAAGGCCATA 60.141 41.667 5.01 0.00 43.09 2.74
1976 2150 4.269183 TGGAACATGTTATGGTGCTAAGG 58.731 43.478 11.95 0.00 39.28 2.69
2041 2223 7.389330 TCAATACAAATGTTGACACGGTATCTT 59.611 33.333 0.00 0.00 31.59 2.40
2325 2558 4.536765 AGTGGTGTGATTTCAGAAAGGTT 58.463 39.130 1.28 0.00 0.00 3.50
2344 2577 4.418392 GCAACCAATCATGAAGCTTAGTG 58.582 43.478 0.00 1.08 0.00 2.74
2560 2794 7.557719 AGTTATGCCTAATATTGCCCATACATC 59.442 37.037 0.00 0.00 0.00 3.06
2860 3096 7.516198 AAGGTGCCATTCATCATTAACTATC 57.484 36.000 0.00 0.00 0.00 2.08
3192 3429 5.645929 TGAAACAGTGACTGCTGAAAGTTAA 59.354 36.000 13.37 0.00 39.62 2.01
3753 3996 1.127567 TAACCAGTCCTGCACCAGCT 61.128 55.000 0.00 0.00 42.74 4.24
3825 4068 9.426837 ACGTATTTCATAGTTGCTACTTTGTAA 57.573 29.630 15.68 13.43 35.57 2.41
3832 4075 7.502339 CATGCTACGTATTTCATAGTTGCTAC 58.498 38.462 0.00 0.00 36.57 3.58
3849 4092 3.361940 CGTATGTGATACTGCATGCTACG 59.638 47.826 20.33 16.28 33.59 3.51
3885 4128 6.079712 ACTTGGGCTTAATCCAGACTTAAT 57.920 37.500 0.00 0.00 35.48 1.40
4017 4260 4.923415 ACCCTCTTTTAATCCCTCTGTTG 58.077 43.478 0.00 0.00 0.00 3.33
4156 4415 2.106511 TCCTGCCTCAACTTTAAGCTGT 59.893 45.455 0.00 0.00 0.00 4.40
4169 4428 4.061596 GCTACATGACTTTATCCTGCCTC 58.938 47.826 0.00 0.00 0.00 4.70
4343 4658 6.233434 CCAACTGCATATGCTCTAAAGGATA 58.767 40.000 27.13 3.19 39.75 2.59
4506 4821 7.731882 TTCGACATACCAAACATGAACTTTA 57.268 32.000 0.00 0.00 0.00 1.85
4736 5054 1.070134 TCTACAATGGCATAGGCGTCC 59.930 52.381 0.00 0.00 42.47 4.79
4738 5056 3.141398 CATTCTACAATGGCATAGGCGT 58.859 45.455 0.00 0.00 42.47 5.68
4752 5070 5.874810 TCCAACTAACATGCAGTCATTCTAC 59.125 40.000 0.00 0.00 0.00 2.59
4789 5107 8.741841 GGTCTCATTTCTCTAGTAGTAACACTT 58.258 37.037 0.00 0.00 0.00 3.16
5266 5642 4.849813 TTGTGATGAGTGGGAATGAGAT 57.150 40.909 0.00 0.00 0.00 2.75
5450 5826 1.645034 CAGTGCTTGGATGGACTACG 58.355 55.000 0.00 0.00 36.49 3.51
5688 6066 7.980662 CAGATCAGGTATAGGAATCATGTCATC 59.019 40.741 0.00 0.00 0.00 2.92
5729 6107 6.345487 GCAATTGTTGTAAGCTTACGGTTTTC 60.345 38.462 27.07 15.25 36.45 2.29
5921 6299 4.504858 CTCGTGTTTAGCACCTAAGGAAT 58.495 43.478 0.00 0.00 44.97 3.01
6025 6403 6.810182 GGAATTGGAGTTGAATCATTTGACAG 59.190 38.462 0.00 0.00 0.00 3.51
6120 6498 6.155737 TGTCATCATCTTCCTCTGAAATCTGA 59.844 38.462 0.00 0.00 0.00 3.27
6339 6717 0.521291 TAGCTGGCATGCGTTCAAAC 59.479 50.000 12.44 0.00 38.13 2.93
6650 7028 8.247562 AGCACAGTTTGATGTTTTAACAGTTTA 58.752 29.630 1.50 0.00 43.04 2.01
7013 7394 6.169800 AGATAAGCTGAGGTGAAAAAGTCTC 58.830 40.000 0.00 0.00 0.00 3.36
7308 7692 0.256752 CATCCTCCTGCCATTGACCA 59.743 55.000 0.00 0.00 0.00 4.02
7494 7881 7.396339 TCTTACCAGAGAGAACTAGTAAATGCA 59.604 37.037 0.00 0.00 0.00 3.96
7728 8115 8.998277 AGGTGTCTTAATCAGCTCTAGTAATA 57.002 34.615 6.66 0.00 38.99 0.98
7760 8147 2.092592 TGAGCAAGGATGACATCAGCAT 60.093 45.455 21.28 11.29 33.17 3.79
7919 8919 4.091800 CGCCAGCACTTAATTTGAATTTGG 59.908 41.667 0.00 0.00 0.00 3.28
8049 9073 5.127682 ACCTGGGATGCAAATAAGATCAAAC 59.872 40.000 0.00 0.00 0.00 2.93
8086 9110 4.342092 AGCTGATAGTGTTTGCCAACTTTT 59.658 37.500 2.01 0.00 33.58 2.27
8249 9273 1.100510 TGAAGCCAGCATCTGCAATC 58.899 50.000 4.79 0.00 45.16 2.67
8601 9625 1.469917 CAAGTGCAACAAGACGCAAG 58.530 50.000 0.00 0.00 41.43 4.01
8846 9875 6.710744 TCGTCATATGTAGCTTCATCTCTGTA 59.289 38.462 9.33 0.00 0.00 2.74
9000 10029 0.810031 CGGCGATGATCGTTCCCTTT 60.810 55.000 16.83 0.00 42.81 3.11
9118 10150 4.974721 CCTTGGTGCTGCCCGGTT 62.975 66.667 0.00 0.00 36.04 4.44
9162 10194 3.642503 CGGCCCTGGTGGTGGTAA 61.643 66.667 0.00 0.00 36.04 2.85
9257 10289 2.359975 GGAGTGCGAAAGGTGGGG 60.360 66.667 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.