Multiple sequence alignment - TraesCS1D01G156900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G156900 chr1D 100.000 8293 0 0 1 8293 221093898 221102190 0.000000e+00 15315.0
1 TraesCS1D01G156900 chr1D 74.812 266 46 14 158 419 373421629 373421877 5.300000e-17 100.0
2 TraesCS1D01G156900 chr1A 97.038 5774 129 21 2536 8293 285982194 285987941 0.000000e+00 9677.0
3 TraesCS1D01G156900 chr1A 94.730 1537 45 9 552 2083 285980448 285981953 0.000000e+00 2357.0
4 TraesCS1D01G156900 chr1A 93.925 214 11 2 2331 2543 285981953 285982165 1.040000e-83 322.0
5 TraesCS1D01G156900 chr1A 97.403 77 1 1 2 78 285979728 285979803 6.760000e-26 130.0
6 TraesCS1D01G156900 chr1A 94.737 38 2 0 6715 6752 285986391 285986428 8.990000e-05 60.2
7 TraesCS1D01G156900 chr1B 96.156 5047 117 22 3257 8293 317419930 317424909 0.000000e+00 8174.0
8 TraesCS1D01G156900 chr1B 95.301 1362 55 8 1939 3295 317418578 317419935 0.000000e+00 2152.0
9 TraesCS1D01G156900 chr1B 94.824 1024 32 13 546 1564 317417123 317418130 0.000000e+00 1578.0
10 TraesCS1D01G156900 chr1B 92.143 280 12 4 1675 1947 317418129 317418405 3.630000e-103 387.0
11 TraesCS1D01G156900 chr1B 94.872 78 4 0 2 79 317417048 317417125 1.130000e-23 122.0
12 TraesCS1D01G156900 chr1B 80.342 117 17 6 421 536 285565230 285565119 5.330000e-12 84.2
13 TraesCS1D01G156900 chr3D 87.024 840 98 9 940 1774 8509163 8508330 0.000000e+00 937.0
14 TraesCS1D01G156900 chr3D 85.403 781 86 18 4973 5749 8520586 8519830 0.000000e+00 785.0
15 TraesCS1D01G156900 chr3D 84.464 811 98 17 4943 5749 8501971 8501185 0.000000e+00 774.0
16 TraesCS1D01G156900 chr3D 81.142 928 139 29 3990 4903 8503165 8502260 0.000000e+00 712.0
17 TraesCS1D01G156900 chr3D 80.306 914 135 32 3992 4896 8521801 8520924 0.000000e+00 649.0
18 TraesCS1D01G156900 chr3D 81.127 763 111 22 5850 6592 8499951 8499202 1.550000e-161 580.0
19 TraesCS1D01G156900 chr3D 77.053 475 85 18 2378 2837 8523268 8522803 1.380000e-62 252.0
20 TraesCS1D01G156900 chr3A 86.534 854 104 10 916 1765 12376054 12376900 0.000000e+00 929.0
21 TraesCS1D01G156900 chr3A 85.749 814 85 22 4943 5749 12380480 12381269 0.000000e+00 832.0
22 TraesCS1D01G156900 chr3A 81.202 782 104 24 4133 4900 12379424 12380176 2.580000e-164 590.0
23 TraesCS1D01G156900 chr3A 95.833 48 2 0 419 466 359304917 359304870 2.480000e-10 78.7
24 TraesCS1D01G156900 chr3B 85.800 838 107 10 940 1774 10309026 10308198 0.000000e+00 878.0
25 TraesCS1D01G156900 chr3B 84.761 794 83 22 4970 5749 10327968 10327199 0.000000e+00 761.0
26 TraesCS1D01G156900 chr3B 87.077 650 69 10 4952 5599 10304477 10303841 0.000000e+00 721.0
27 TraesCS1D01G156900 chr3B 80.989 910 132 32 4010 4900 10305847 10304960 0.000000e+00 684.0
28 TraesCS1D01G156900 chr3B 80.692 896 133 30 4017 4896 10329194 10328323 0.000000e+00 660.0
29 TraesCS1D01G156900 chr3B 85.355 437 61 2 5953 6386 10301981 10301545 4.570000e-122 449.0
30 TraesCS1D01G156900 chr3B 87.029 239 31 0 80 318 325261376 325261614 3.810000e-68 270.0
31 TraesCS1D01G156900 chr3B 91.228 57 1 4 411 464 727412329 727412384 3.210000e-09 75.0
32 TraesCS1D01G156900 chr3B 94.737 38 2 0 89 126 799710335 799710298 8.990000e-05 60.2
33 TraesCS1D01G156900 chr7D 89.933 298 28 2 5401 5698 611273384 611273089 4.700000e-102 383.0
34 TraesCS1D01G156900 chr2A 84.483 116 13 5 2136 2251 725255886 725255776 8.800000e-20 110.0
35 TraesCS1D01G156900 chr2A 94.000 50 3 0 409 458 1954518 1954567 8.930000e-10 76.8
36 TraesCS1D01G156900 chr2A 94.000 50 3 0 409 458 2084459 2084508 8.930000e-10 76.8
37 TraesCS1D01G156900 chr7A 79.195 149 28 2 276 423 628987170 628987024 5.300000e-17 100.0
38 TraesCS1D01G156900 chr7A 89.655 58 6 0 348 405 694026669 694026612 3.210000e-09 75.0
39 TraesCS1D01G156900 chr2B 76.871 147 34 0 277 423 785617374 785617228 5.330000e-12 84.2
40 TraesCS1D01G156900 chr2B 78.788 132 20 6 296 423 143189475 143189348 1.920000e-11 82.4
41 TraesCS1D01G156900 chr4B 85.000 80 12 0 340 419 504345489 504345410 1.920000e-11 82.4
42 TraesCS1D01G156900 chr4B 85.915 71 4 3 475 540 168711991 168711922 4.150000e-08 71.3
43 TraesCS1D01G156900 chr7B 95.833 48 2 0 414 461 529671392 529671345 2.480000e-10 78.7
44 TraesCS1D01G156900 chr7B 77.778 117 18 7 422 538 105036588 105036480 1.930000e-06 65.8
45 TraesCS1D01G156900 chr7B 100.000 28 0 0 1063 1090 524991540 524991567 1.500000e-02 52.8
46 TraesCS1D01G156900 chr4D 94.118 51 2 1 412 461 609628 609578 8.930000e-10 76.8
47 TraesCS1D01G156900 chr4A 84.932 73 6 5 422 493 529315986 529315918 1.490000e-07 69.4
48 TraesCS1D01G156900 chr6A 94.595 37 2 0 503 539 70393233 70393197 3.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G156900 chr1D 221093898 221102190 8292 False 15315.000000 15315 100.000000 1 8293 1 chr1D.!!$F1 8292
1 TraesCS1D01G156900 chr1A 285979728 285987941 8213 False 2509.240000 9677 95.566600 2 8293 5 chr1A.!!$F1 8291
2 TraesCS1D01G156900 chr1B 317417048 317424909 7861 False 2482.600000 8174 94.659200 2 8293 5 chr1B.!!$F1 8291
3 TraesCS1D01G156900 chr3D 8508330 8509163 833 True 937.000000 937 87.024000 940 1774 1 chr3D.!!$R1 834
4 TraesCS1D01G156900 chr3D 8499202 8503165 3963 True 688.666667 774 82.244333 3990 6592 3 chr3D.!!$R2 2602
5 TraesCS1D01G156900 chr3D 8519830 8523268 3438 True 562.000000 785 80.920667 2378 5749 3 chr3D.!!$R3 3371
6 TraesCS1D01G156900 chr3A 12376054 12381269 5215 False 783.666667 929 84.495000 916 5749 3 chr3A.!!$F1 4833
7 TraesCS1D01G156900 chr3B 10327199 10329194 1995 True 710.500000 761 82.726500 4017 5749 2 chr3B.!!$R3 1732
8 TraesCS1D01G156900 chr3B 10301545 10309026 7481 True 683.000000 878 84.805250 940 6386 4 chr3B.!!$R2 5446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.037790 GATACATGGAGAGCCCGCTC 60.038 60.000 8.70 8.7 43.03 5.03 F
357 358 0.177836 GCTCCCTTCTCTCTCTTGCC 59.822 60.000 0.00 0.0 0.00 4.52 F
436 437 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.0 0.00 4.37 F
437 438 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.0 0.00 4.00 F
2396 3050 0.674895 GGGGTGTGTAGAAGCAGCAG 60.675 60.000 0.00 0.0 35.09 4.24 F
2470 3129 1.134965 ACTTCAGCTTTCGATCCTCCG 60.135 52.381 0.00 0.0 0.00 4.63 F
3594 4601 1.280710 TGGATTCCGTACATGCAAGGT 59.719 47.619 0.00 0.0 32.53 3.50 F
3893 4933 6.620877 TCTGAAACTATTTTCTAGCCAGGA 57.379 37.500 7.05 0.0 41.64 3.86 F
5705 7387 2.165234 TCTCACTCTATGCACTGCTGAC 59.835 50.000 1.98 0.0 0.00 3.51 F
7019 10378 0.590195 CAGCACTTGGAACTCTGCAC 59.410 55.000 0.00 0.0 31.71 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2637 0.100325 TTGCTGCCACAAACGTGAAG 59.900 50.000 0.00 0.00 36.43 3.02 R
2341 2995 3.015675 TGCACATAATCTGGCCAATCA 57.984 42.857 7.01 0.00 0.00 2.57 R
2396 3050 7.278875 ACTAATTCTCCATGAAGTCCTCAATC 58.721 38.462 0.00 0.00 37.67 2.67 R
2452 3111 3.741029 CGGAGGATCGAAAGCTGAA 57.259 52.632 0.00 0.00 34.37 3.02 R
3891 4931 2.827642 GCACATGCTCCTGCCTCC 60.828 66.667 0.00 0.00 38.71 4.30 R
4291 5392 6.142817 ACACAGACGCAAACAAAGATTAATC 58.857 36.000 7.41 7.41 0.00 1.75 R
4564 5670 1.537202 GGCAACTTGGTGATCAGTGAC 59.463 52.381 0.00 0.00 0.00 3.67 R
5827 9112 5.878406 TGAACCATTAAAGCCTTTTTCCA 57.122 34.783 0.00 0.00 0.00 3.53 R
7105 10464 1.068741 GGGATGTAGTTAGGTGGAGCG 59.931 57.143 0.00 0.00 0.00 5.03 R
8080 11442 2.364710 GGTACTAGCCCCCGTGGT 60.365 66.667 0.00 0.00 36.04 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.584325 CCCAAATCACTCCAACTCTTTTCA 59.416 41.667 0.00 0.00 0.00 2.69
79 80 5.278660 CCCAAATCACTCCAACTCTTTTCAG 60.279 44.000 0.00 0.00 0.00 3.02
80 81 5.532406 CCAAATCACTCCAACTCTTTTCAGA 59.468 40.000 0.00 0.00 0.00 3.27
94 95 7.783090 CTCTTTTCAGAGCATGCTTAATAGA 57.217 36.000 23.61 21.16 40.39 1.98
95 96 8.206325 CTCTTTTCAGAGCATGCTTAATAGAA 57.794 34.615 23.61 17.25 40.39 2.10
96 97 8.206325 TCTTTTCAGAGCATGCTTAATAGAAG 57.794 34.615 23.61 19.55 0.00 2.85
97 98 8.043113 TCTTTTCAGAGCATGCTTAATAGAAGA 58.957 33.333 23.61 21.25 0.00 2.87
101 102 3.749226 AGCATGCTTAATAGAAGAGCCC 58.251 45.455 16.30 0.00 35.59 5.19
102 103 2.481952 GCATGCTTAATAGAAGAGCCCG 59.518 50.000 11.37 0.00 35.59 6.13
103 104 3.733337 CATGCTTAATAGAAGAGCCCGT 58.267 45.455 0.00 0.00 35.59 5.28
104 105 3.906720 TGCTTAATAGAAGAGCCCGTT 57.093 42.857 0.00 0.00 35.59 4.44
105 106 3.531538 TGCTTAATAGAAGAGCCCGTTG 58.468 45.455 0.00 0.00 35.59 4.10
106 107 2.288186 GCTTAATAGAAGAGCCCGTTGC 59.712 50.000 0.00 0.00 41.71 4.17
108 109 0.462047 AATAGAAGAGCCCGTTGCCG 60.462 55.000 0.00 0.00 42.71 5.69
118 119 2.202932 CGTTGCCGGCTCTATGCT 60.203 61.111 29.70 0.00 42.39 3.79
119 120 1.067416 CGTTGCCGGCTCTATGCTA 59.933 57.895 29.70 0.07 42.39 3.49
120 121 0.941463 CGTTGCCGGCTCTATGCTAG 60.941 60.000 29.70 4.74 42.39 3.42
121 122 0.105039 GTTGCCGGCTCTATGCTAGT 59.895 55.000 29.70 0.00 42.39 2.57
123 124 1.666234 GCCGGCTCTATGCTAGTGC 60.666 63.158 22.15 8.04 42.77 4.40
128 129 2.540265 GCTCTATGCTAGTGCCACAT 57.460 50.000 0.00 0.00 38.88 3.21
129 130 2.843701 GCTCTATGCTAGTGCCACATT 58.156 47.619 0.00 0.00 38.88 2.71
130 131 3.209410 GCTCTATGCTAGTGCCACATTT 58.791 45.455 0.00 0.00 38.88 2.32
131 132 3.003068 GCTCTATGCTAGTGCCACATTTG 59.997 47.826 0.00 0.00 38.88 2.32
132 133 4.194640 CTCTATGCTAGTGCCACATTTGT 58.805 43.478 0.00 0.00 38.71 2.83
134 135 3.581024 ATGCTAGTGCCACATTTGTTG 57.419 42.857 0.00 0.00 38.71 3.33
135 136 2.305928 TGCTAGTGCCACATTTGTTGT 58.694 42.857 0.00 0.00 38.71 3.32
136 137 3.481453 TGCTAGTGCCACATTTGTTGTA 58.519 40.909 0.00 0.00 35.94 2.41
137 138 3.501828 TGCTAGTGCCACATTTGTTGTAG 59.498 43.478 0.00 0.00 35.94 2.74
138 139 3.670627 GCTAGTGCCACATTTGTTGTAGC 60.671 47.826 0.00 0.00 42.52 3.58
141 142 2.035832 GTGCCACATTTGTTGTAGCCTT 59.964 45.455 0.00 0.00 41.64 4.35
142 143 2.295909 TGCCACATTTGTTGTAGCCTTC 59.704 45.455 0.00 0.00 41.64 3.46
143 144 2.352715 GCCACATTTGTTGTAGCCTTCC 60.353 50.000 0.00 0.00 37.03 3.46
144 145 3.157087 CCACATTTGTTGTAGCCTTCCT 58.843 45.455 0.00 0.00 36.57 3.36
145 146 4.331968 CCACATTTGTTGTAGCCTTCCTA 58.668 43.478 0.00 0.00 36.57 2.94
146 147 4.949856 CCACATTTGTTGTAGCCTTCCTAT 59.050 41.667 0.00 0.00 36.57 2.57
147 148 6.119536 CCACATTTGTTGTAGCCTTCCTATA 58.880 40.000 0.00 0.00 36.57 1.31
148 149 6.601613 CCACATTTGTTGTAGCCTTCCTATAA 59.398 38.462 0.00 0.00 36.57 0.98
149 150 7.122055 CCACATTTGTTGTAGCCTTCCTATAAA 59.878 37.037 0.00 0.00 36.57 1.40
152 153 8.739972 CATTTGTTGTAGCCTTCCTATAAAAGT 58.260 33.333 0.00 0.00 30.28 2.66
153 154 9.969001 ATTTGTTGTAGCCTTCCTATAAAAGTA 57.031 29.630 0.00 0.00 30.28 2.24
155 156 8.142485 TGTTGTAGCCTTCCTATAAAAGTACT 57.858 34.615 0.00 0.00 30.28 2.73
156 157 8.255905 TGTTGTAGCCTTCCTATAAAAGTACTC 58.744 37.037 0.00 0.00 30.28 2.59
157 158 7.966339 TGTAGCCTTCCTATAAAAGTACTCA 57.034 36.000 0.00 0.00 0.00 3.41
158 159 8.548880 TGTAGCCTTCCTATAAAAGTACTCAT 57.451 34.615 0.00 0.00 0.00 2.90
159 160 9.650714 TGTAGCCTTCCTATAAAAGTACTCATA 57.349 33.333 0.00 0.00 0.00 2.15
174 175 9.843334 AAAGTACTCATATAATAAGCTCGCTAC 57.157 33.333 0.00 0.00 0.00 3.58
175 176 8.563123 AGTACTCATATAATAAGCTCGCTACA 57.437 34.615 0.00 0.00 0.00 2.74
177 178 7.689446 ACTCATATAATAAGCTCGCTACAGA 57.311 36.000 0.00 0.00 0.00 3.41
178 179 8.287439 ACTCATATAATAAGCTCGCTACAGAT 57.713 34.615 0.00 0.00 0.00 2.90
179 180 9.397280 ACTCATATAATAAGCTCGCTACAGATA 57.603 33.333 0.00 0.00 0.00 1.98
182 183 8.963130 CATATAATAAGCTCGCTACAGATAAGC 58.037 37.037 0.00 0.00 36.60 3.09
183 184 5.461032 AATAAGCTCGCTACAGATAAGCT 57.539 39.130 0.00 0.00 44.84 3.74
184 185 6.576662 AATAAGCTCGCTACAGATAAGCTA 57.423 37.500 0.00 0.00 42.24 3.32
185 186 6.767524 ATAAGCTCGCTACAGATAAGCTAT 57.232 37.500 0.00 0.00 42.24 2.97
186 187 7.867305 ATAAGCTCGCTACAGATAAGCTATA 57.133 36.000 0.00 0.00 42.24 1.31
187 188 6.576662 AAGCTCGCTACAGATAAGCTATAA 57.423 37.500 0.00 0.00 42.24 0.98
188 189 6.767524 AGCTCGCTACAGATAAGCTATAAT 57.232 37.500 0.00 0.00 41.32 1.28
189 190 7.867305 AGCTCGCTACAGATAAGCTATAATA 57.133 36.000 0.00 0.00 41.32 0.98
190 191 8.458573 AGCTCGCTACAGATAAGCTATAATAT 57.541 34.615 0.00 0.00 41.32 1.28
191 192 8.908903 AGCTCGCTACAGATAAGCTATAATATT 58.091 33.333 0.00 0.00 41.32 1.28
192 193 9.176181 GCTCGCTACAGATAAGCTATAATATTC 57.824 37.037 0.00 0.00 37.85 1.75
204 205 8.926715 AAGCTATAATATTCAATGCATGCATG 57.073 30.769 32.79 24.43 36.68 4.06
224 225 2.749280 CCAAGATGGGCAAAGGAAAC 57.251 50.000 0.00 0.00 32.67 2.78
227 228 2.817258 CAAGATGGGCAAAGGAAACGTA 59.183 45.455 0.00 0.00 0.00 3.57
228 229 3.366052 AGATGGGCAAAGGAAACGTAT 57.634 42.857 0.00 0.00 0.00 3.06
229 230 4.497291 AGATGGGCAAAGGAAACGTATA 57.503 40.909 0.00 0.00 0.00 1.47
230 231 5.048846 AGATGGGCAAAGGAAACGTATAT 57.951 39.130 0.00 0.00 0.00 0.86
231 232 5.445964 AGATGGGCAAAGGAAACGTATATT 58.554 37.500 0.00 0.00 0.00 1.28
232 233 4.974368 TGGGCAAAGGAAACGTATATTG 57.026 40.909 0.00 0.00 0.00 1.90
233 234 4.590918 TGGGCAAAGGAAACGTATATTGA 58.409 39.130 0.00 0.00 0.00 2.57
235 236 5.654650 TGGGCAAAGGAAACGTATATTGATT 59.345 36.000 0.00 0.00 0.00 2.57
236 237 5.977129 GGGCAAAGGAAACGTATATTGATTG 59.023 40.000 0.00 0.00 0.00 2.67
237 238 5.977129 GGCAAAGGAAACGTATATTGATTGG 59.023 40.000 0.00 0.00 0.00 3.16
238 239 5.458779 GCAAAGGAAACGTATATTGATTGGC 59.541 40.000 0.00 0.00 0.00 4.52
240 241 7.257722 CAAAGGAAACGTATATTGATTGGCTT 58.742 34.615 0.00 0.00 0.00 4.35
241 242 6.377327 AGGAAACGTATATTGATTGGCTTG 57.623 37.500 0.00 0.00 0.00 4.01
242 243 5.885912 AGGAAACGTATATTGATTGGCTTGT 59.114 36.000 0.00 0.00 0.00 3.16
243 244 7.051623 AGGAAACGTATATTGATTGGCTTGTA 58.948 34.615 0.00 0.00 0.00 2.41
244 245 7.226720 AGGAAACGTATATTGATTGGCTTGTAG 59.773 37.037 0.00 0.00 0.00 2.74
245 246 7.225931 GGAAACGTATATTGATTGGCTTGTAGA 59.774 37.037 0.00 0.00 0.00 2.59
247 248 8.500753 AACGTATATTGATTGGCTTGTAGAAA 57.499 30.769 0.00 0.00 0.00 2.52
248 249 8.677148 ACGTATATTGATTGGCTTGTAGAAAT 57.323 30.769 0.00 0.00 0.00 2.17
259 260 5.132437 GCTTGTAGAAATAAGCGTCTGTC 57.868 43.478 0.00 0.00 39.60 3.51
260 261 4.865365 GCTTGTAGAAATAAGCGTCTGTCT 59.135 41.667 0.00 0.00 39.60 3.41
261 262 5.348997 GCTTGTAGAAATAAGCGTCTGTCTT 59.651 40.000 0.00 0.00 39.60 3.01
262 263 6.128526 GCTTGTAGAAATAAGCGTCTGTCTTT 60.129 38.462 0.00 0.00 39.60 2.52
263 264 7.063074 GCTTGTAGAAATAAGCGTCTGTCTTTA 59.937 37.037 0.00 0.00 39.60 1.85
264 265 8.462143 TTGTAGAAATAAGCGTCTGTCTTTAG 57.538 34.615 0.00 0.00 0.00 1.85
265 266 7.600065 TGTAGAAATAAGCGTCTGTCTTTAGT 58.400 34.615 0.00 0.00 0.00 2.24
266 267 7.754027 TGTAGAAATAAGCGTCTGTCTTTAGTC 59.246 37.037 0.00 0.00 0.00 2.59
267 268 6.926313 AGAAATAAGCGTCTGTCTTTAGTCT 58.074 36.000 0.00 0.00 0.00 3.24
269 270 6.952935 AATAAGCGTCTGTCTTTAGTCTTG 57.047 37.500 0.00 0.00 0.00 3.02
272 273 2.866460 GCGTCTGTCTTTAGTCTTGCCA 60.866 50.000 0.00 0.00 0.00 4.92
273 274 2.731976 CGTCTGTCTTTAGTCTTGCCAC 59.268 50.000 0.00 0.00 0.00 5.01
274 275 3.067833 GTCTGTCTTTAGTCTTGCCACC 58.932 50.000 0.00 0.00 0.00 4.61
275 276 2.069273 CTGTCTTTAGTCTTGCCACCG 58.931 52.381 0.00 0.00 0.00 4.94
293 294 2.900838 GCTGCATGCTGGCTCGAT 60.901 61.111 23.88 0.00 38.95 3.59
294 295 3.023118 CTGCATGCTGGCTCGATG 58.977 61.111 20.33 0.00 34.04 3.84
295 296 1.818363 CTGCATGCTGGCTCGATGT 60.818 57.895 20.33 0.00 34.04 3.06
296 297 1.773054 CTGCATGCTGGCTCGATGTC 61.773 60.000 20.33 0.00 34.04 3.06
297 298 1.816679 GCATGCTGGCTCGATGTCA 60.817 57.895 11.37 0.00 0.00 3.58
298 299 1.164662 GCATGCTGGCTCGATGTCAT 61.165 55.000 11.37 0.00 0.00 3.06
299 300 0.866427 CATGCTGGCTCGATGTCATC 59.134 55.000 2.43 2.43 0.00 2.92
313 314 3.106242 TGTCATCGTAGCTTGTGTTGT 57.894 42.857 0.00 0.00 0.00 3.32
314 315 4.245845 TGTCATCGTAGCTTGTGTTGTA 57.754 40.909 0.00 0.00 0.00 2.41
316 317 3.060895 GTCATCGTAGCTTGTGTTGTAGC 59.939 47.826 0.00 0.00 37.66 3.58
317 318 2.074547 TCGTAGCTTGTGTTGTAGCC 57.925 50.000 0.00 0.00 38.14 3.93
318 319 1.076332 CGTAGCTTGTGTTGTAGCCC 58.924 55.000 0.00 0.00 38.14 5.19
319 320 1.606994 CGTAGCTTGTGTTGTAGCCCA 60.607 52.381 0.00 0.00 38.14 5.36
320 321 2.500229 GTAGCTTGTGTTGTAGCCCAA 58.500 47.619 0.00 0.00 38.14 4.12
321 322 1.609208 AGCTTGTGTTGTAGCCCAAG 58.391 50.000 0.00 0.00 38.14 3.61
322 323 0.598065 GCTTGTGTTGTAGCCCAAGG 59.402 55.000 0.00 0.00 35.86 3.61
323 324 1.817740 GCTTGTGTTGTAGCCCAAGGA 60.818 52.381 0.00 0.00 35.86 3.36
324 325 2.795329 CTTGTGTTGTAGCCCAAGGAT 58.205 47.619 0.00 0.00 32.51 3.24
325 326 3.872240 GCTTGTGTTGTAGCCCAAGGATA 60.872 47.826 0.00 0.00 35.86 2.59
337 338 2.557920 CAAGGATACATGGAGAGCCC 57.442 55.000 0.00 0.00 41.41 5.19
340 341 1.476007 GGATACATGGAGAGCCCGCT 61.476 60.000 0.00 0.00 37.93 5.52
341 342 0.037790 GATACATGGAGAGCCCGCTC 60.038 60.000 8.70 8.70 43.03 5.03
347 348 2.762043 GAGAGCCCGCTCCCTTCT 60.762 66.667 13.02 0.00 43.70 2.85
348 349 2.762043 AGAGCCCGCTCCCTTCTC 60.762 66.667 13.02 0.00 43.70 2.87
350 351 2.762043 AGCCCGCTCCCTTCTCTC 60.762 66.667 0.00 0.00 0.00 3.20
352 353 2.791868 GCCCGCTCCCTTCTCTCTC 61.792 68.421 0.00 0.00 0.00 3.20
354 355 0.686112 CCCGCTCCCTTCTCTCTCTT 60.686 60.000 0.00 0.00 0.00 2.85
355 356 0.459489 CCGCTCCCTTCTCTCTCTTG 59.541 60.000 0.00 0.00 0.00 3.02
357 358 0.177836 GCTCCCTTCTCTCTCTTGCC 59.822 60.000 0.00 0.00 0.00 4.52
358 359 1.864669 CTCCCTTCTCTCTCTTGCCT 58.135 55.000 0.00 0.00 0.00 4.75
359 360 2.187100 CTCCCTTCTCTCTCTTGCCTT 58.813 52.381 0.00 0.00 0.00 4.35
361 362 2.187100 CCCTTCTCTCTCTTGCCTTCT 58.813 52.381 0.00 0.00 0.00 2.85
362 363 2.168313 CCCTTCTCTCTCTTGCCTTCTC 59.832 54.545 0.00 0.00 0.00 2.87
363 364 3.099141 CCTTCTCTCTCTTGCCTTCTCT 58.901 50.000 0.00 0.00 0.00 3.10
365 366 4.020307 CCTTCTCTCTCTTGCCTTCTCTTT 60.020 45.833 0.00 0.00 0.00 2.52
366 367 4.799564 TCTCTCTCTTGCCTTCTCTTTC 57.200 45.455 0.00 0.00 0.00 2.62
367 368 3.513515 TCTCTCTCTTGCCTTCTCTTTCC 59.486 47.826 0.00 0.00 0.00 3.13
371 372 2.304180 CTCTTGCCTTCTCTTTCCTCCA 59.696 50.000 0.00 0.00 0.00 3.86
372 373 2.711009 TCTTGCCTTCTCTTTCCTCCAA 59.289 45.455 0.00 0.00 0.00 3.53
373 374 3.331889 TCTTGCCTTCTCTTTCCTCCAAT 59.668 43.478 0.00 0.00 0.00 3.16
374 375 3.814504 TGCCTTCTCTTTCCTCCAATT 57.185 42.857 0.00 0.00 0.00 2.32
375 376 4.927267 TGCCTTCTCTTTCCTCCAATTA 57.073 40.909 0.00 0.00 0.00 1.40
391 392 6.211587 TCCAATTAGGATTTTGCTGATGTG 57.788 37.500 0.00 0.00 43.07 3.21
393 394 5.127519 CCAATTAGGATTTTGCTGATGTGGA 59.872 40.000 0.00 0.00 41.22 4.02
394 395 6.351202 CCAATTAGGATTTTGCTGATGTGGAA 60.351 38.462 0.00 0.00 41.22 3.53
409 410 4.689612 TGTGGAACATCTTATAGCCTCC 57.310 45.455 0.00 0.00 45.67 4.30
411 412 4.101585 TGTGGAACATCTTATAGCCTCCTG 59.898 45.833 0.00 0.00 45.67 3.86
412 413 4.345257 GTGGAACATCTTATAGCCTCCTGA 59.655 45.833 0.00 0.00 44.52 3.86
413 414 4.590647 TGGAACATCTTATAGCCTCCTGAG 59.409 45.833 0.00 0.00 0.00 3.35
415 416 5.775701 GGAACATCTTATAGCCTCCTGAGTA 59.224 44.000 0.00 0.00 0.00 2.59
416 417 6.071616 GGAACATCTTATAGCCTCCTGAGTAG 60.072 46.154 0.00 0.00 0.00 2.57
430 431 4.028993 CTGAGTAGGATCTACTCCCTCC 57.971 54.545 23.99 7.76 46.27 4.30
431 432 2.372504 TGAGTAGGATCTACTCCCTCCG 59.627 54.545 23.99 0.00 46.27 4.63
432 433 2.372837 GAGTAGGATCTACTCCCTCCGT 59.627 54.545 19.09 0.00 46.27 4.69
434 435 0.479378 AGGATCTACTCCCTCCGTCC 59.521 60.000 0.00 0.00 46.27 4.79
435 436 0.540133 GGATCTACTCCCTCCGTCCC 60.540 65.000 0.00 0.00 38.19 4.46
436 437 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
437 438 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
438 439 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
441 442 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
444 445 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
446 447 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
447 448 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
448 449 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
449 450 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
451 452 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
454 455 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
455 456 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
456 457 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
458 459 9.675464 TCCCATAATATAAGAACGTTTTTGACT 57.325 29.630 13.87 0.00 0.00 3.41
459 460 9.931210 CCCATAATATAAGAACGTTTTTGACTC 57.069 33.333 13.87 0.00 0.00 3.36
487 488 7.588143 TTTTTGCGAGAAAGAATGTTTTTGA 57.412 28.000 0.00 0.00 0.00 2.69
489 490 5.242069 TGCGAGAAAGAATGTTTTTGACA 57.758 34.783 0.00 0.00 43.71 3.58
506 507 9.706846 GTTTTTGACATTAGTGTAGTAAAACGT 57.293 29.630 13.95 0.00 39.09 3.99
508 509 9.919348 TTTTGACATTAGTGTAGTAAAACGTTC 57.081 29.630 0.00 0.00 39.09 3.95
509 510 8.876275 TTGACATTAGTGTAGTAAAACGTTCT 57.124 30.769 0.00 0.00 39.09 3.01
510 511 8.876275 TGACATTAGTGTAGTAAAACGTTCTT 57.124 30.769 0.00 1.04 39.09 2.52
511 512 9.964303 TGACATTAGTGTAGTAAAACGTTCTTA 57.036 29.630 0.00 0.03 39.09 2.10
528 529 8.502105 ACGTTCTTATATTTTAGGACAAAGGG 57.498 34.615 0.00 0.00 0.00 3.95
530 531 8.827677 CGTTCTTATATTTTAGGACAAAGGGAG 58.172 37.037 0.00 0.00 0.00 4.30
531 532 9.682465 GTTCTTATATTTTAGGACAAAGGGAGT 57.318 33.333 0.00 0.00 0.00 3.85
542 543 6.592870 AGGACAAAGGGAGTATTATACTTGC 58.407 40.000 6.33 0.00 39.59 4.01
543 544 6.387220 AGGACAAAGGGAGTATTATACTTGCT 59.613 38.462 6.33 0.00 39.59 3.91
544 545 6.706716 GGACAAAGGGAGTATTATACTTGCTC 59.293 42.308 6.33 0.00 39.59 4.26
545 546 7.419172 GGACAAAGGGAGTATTATACTTGCTCT 60.419 40.741 6.33 0.00 39.59 4.09
550 722 6.784969 AGGGAGTATTATACTTGCTCTCACAT 59.215 38.462 6.33 0.00 39.59 3.21
593 766 5.134339 TGCTTCCCCAATAATCTTGGAGTAT 59.866 40.000 5.57 0.00 42.06 2.12
612 785 2.665649 TGTTCGCATAGACGGTCAAT 57.334 45.000 11.27 0.00 0.00 2.57
613 786 2.967362 TGTTCGCATAGACGGTCAATT 58.033 42.857 11.27 0.00 0.00 2.32
676 849 2.027073 GCAGCCGATCGTCAACACA 61.027 57.895 15.09 0.00 0.00 3.72
731 909 6.306356 CAGTTCTGATTAAACAAAGGCATTCG 59.694 38.462 0.00 0.00 0.00 3.34
732 910 5.309323 TCTGATTAAACAAAGGCATTCGG 57.691 39.130 0.00 0.00 0.00 4.30
733 911 5.007034 TCTGATTAAACAAAGGCATTCGGA 58.993 37.500 0.00 0.00 0.00 4.55
734 912 5.475220 TCTGATTAAACAAAGGCATTCGGAA 59.525 36.000 0.00 0.00 0.00 4.30
735 913 6.152661 TCTGATTAAACAAAGGCATTCGGAAT 59.847 34.615 0.00 0.00 0.00 3.01
736 914 6.329496 TGATTAAACAAAGGCATTCGGAATC 58.671 36.000 0.00 0.00 0.00 2.52
811 989 0.874607 AACGAAGCTGGACGTGACAC 60.875 55.000 13.03 0.00 42.43 3.67
816 994 1.664965 GCTGGACGTGACACAGGAC 60.665 63.158 6.37 0.00 32.98 3.85
817 995 2.041976 CTGGACGTGACACAGGACT 58.958 57.895 6.37 0.00 0.00 3.85
821 999 1.202154 GGACGTGACACAGGACTATCG 60.202 57.143 6.37 0.00 0.00 2.92
878 1056 1.302271 GTTCCACACTTCCCGACCC 60.302 63.158 0.00 0.00 0.00 4.46
904 1082 5.292589 GCCATTCAACACAAATCAATCCATC 59.707 40.000 0.00 0.00 0.00 3.51
1691 1872 1.078497 ACGCCGGATGCTTCATGAA 60.078 52.632 5.05 8.12 38.05 2.57
1886 2077 1.957186 TTGCTTGCACGACCGGTAC 60.957 57.895 7.34 0.00 0.00 3.34
1962 2532 8.644619 GTTTAAAATTGTCCTAATCTTTTCCGC 58.355 33.333 0.00 0.00 0.00 5.54
1991 2606 7.772332 ATTAGTCCTACGTTGCAAATTAGAG 57.228 36.000 14.47 7.18 0.00 2.43
2022 2637 5.977489 AATTTCACTGTTTACCCCTAAGC 57.023 39.130 0.00 0.00 0.00 3.09
2051 2666 1.549620 TGTGGCAGCAATTACCCAATG 59.450 47.619 0.00 0.00 0.00 2.82
2105 2720 3.004734 AGCAGACTTGTGCCACATTTTAC 59.995 43.478 0.00 0.00 45.20 2.01
2109 2724 3.821033 GACTTGTGCCACATTTTACTCCT 59.179 43.478 0.00 0.00 0.00 3.69
2117 2732 8.207545 TGTGCCACATTTTACTCCTTTTTATTT 58.792 29.630 0.00 0.00 0.00 1.40
2152 2767 5.505654 CGTTCTGACAGGTTTGCTTAAATGT 60.506 40.000 1.81 0.00 0.00 2.71
2228 2843 5.546035 ACTTAGGGGGTAACAAATGGAAT 57.454 39.130 0.00 0.00 39.74 3.01
2341 2995 7.790823 AAAAATTAGAAACATTTGCTGCACT 57.209 28.000 0.00 0.00 0.00 4.40
2396 3050 0.674895 GGGGTGTGTAGAAGCAGCAG 60.675 60.000 0.00 0.00 35.09 4.24
2470 3129 1.134965 ACTTCAGCTTTCGATCCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
2521 3180 2.593026 TGTTTGGGGTGAGATTGAACC 58.407 47.619 0.00 0.00 35.59 3.62
2575 3269 3.056607 AGGCATGTTAATTTGCACCAGTC 60.057 43.478 12.79 0.00 40.66 3.51
2577 3271 3.611530 GCATGTTAATTTGCACCAGTCGT 60.612 43.478 7.49 0.00 38.72 4.34
3122 4064 5.059833 GCTATCCGAATCACTTCCATTTCT 58.940 41.667 0.00 0.00 0.00 2.52
3398 4402 5.584649 CCTCCTGCAGTGAACGATAAATTTA 59.415 40.000 13.81 0.00 0.00 1.40
3594 4601 1.280710 TGGATTCCGTACATGCAAGGT 59.719 47.619 0.00 0.00 32.53 3.50
3762 4802 8.303876 AGTGTTCAACTTATTGTTTGAACAGTT 58.696 29.630 23.38 15.07 45.08 3.16
3891 4931 8.273780 ACATTCTGAAACTATTTTCTAGCCAG 57.726 34.615 7.05 0.00 41.64 4.85
3892 4932 7.337942 ACATTCTGAAACTATTTTCTAGCCAGG 59.662 37.037 7.05 0.00 41.64 4.45
3893 4933 6.620877 TCTGAAACTATTTTCTAGCCAGGA 57.379 37.500 7.05 0.00 41.64 3.86
3894 4934 6.644347 TCTGAAACTATTTTCTAGCCAGGAG 58.356 40.000 7.05 0.00 41.64 3.69
3950 4990 7.722285 GCACCTTTGTACCTATCCCATAATTTA 59.278 37.037 0.00 0.00 0.00 1.40
4291 5392 9.762933 TTCTGGAAAGTTAATTGGAAAAGAATG 57.237 29.630 0.00 0.00 0.00 2.67
4887 6002 3.441572 CCTTTGATCCTTGCTTCGTCATT 59.558 43.478 0.00 0.00 0.00 2.57
5542 7116 7.830099 ATCCATCTTTCTTCTGAAAACTTGT 57.170 32.000 0.00 0.00 41.09 3.16
5628 7202 4.396166 GTCTTTGATATGTCCTTGTGGGTG 59.604 45.833 0.00 0.00 36.25 4.61
5705 7387 2.165234 TCTCACTCTATGCACTGCTGAC 59.835 50.000 1.98 0.00 0.00 3.51
5757 7440 8.074613 TCTTTCTAAGTAAGCATTGCCTAGTA 57.925 34.615 4.70 0.00 0.00 1.82
5758 7441 7.980099 TCTTTCTAAGTAAGCATTGCCTAGTAC 59.020 37.037 4.70 3.48 0.00 2.73
6003 9340 3.950397 TGATTAGCTTGGTGGACGAATT 58.050 40.909 0.00 0.00 0.00 2.17
6008 9345 1.606668 GCTTGGTGGACGAATTGTTGA 59.393 47.619 0.00 0.00 0.00 3.18
6127 9464 2.230266 GGTGGTTGTGTTGTTGTTGTCT 59.770 45.455 0.00 0.00 0.00 3.41
6779 10133 1.496060 TTGTGTGTGAGAGGACAGGT 58.504 50.000 0.00 0.00 0.00 4.00
6846 10200 2.143925 GGTGCTAACAAGTGACTGGTC 58.856 52.381 0.00 0.00 0.00 4.02
6858 10212 5.662674 AGTGACTGGTCCTTTCTACATAC 57.337 43.478 0.00 0.00 0.00 2.39
6937 10291 4.402474 CCTACAGGAAGCCCTTAAATTTGG 59.598 45.833 0.00 0.00 42.02 3.28
7019 10378 0.590195 CAGCACTTGGAACTCTGCAC 59.410 55.000 0.00 0.00 31.71 4.57
7105 10464 9.151471 ACACATAGAATACACAAAGTACATGAC 57.849 33.333 0.00 0.00 35.05 3.06
7112 10471 2.157668 CACAAAGTACATGACGCTCCAC 59.842 50.000 0.00 0.00 0.00 4.02
7228 10587 4.457810 CGACAACAGTTGCTGATACAAAG 58.542 43.478 13.56 0.00 35.18 2.77
7247 10606 3.064900 AGTGCAAATGAGAGGGAAGAC 57.935 47.619 0.00 0.00 0.00 3.01
7388 10747 9.930693 CCTACAGACTGACTACTAAAATTCTTT 57.069 33.333 10.08 0.00 0.00 2.52
7592 10954 1.950909 AGTGGTCTAGCACTATCGAGC 59.049 52.381 12.86 0.00 0.00 5.03
7607 10969 5.764192 ACTATCGAGCGGTCTACTTATCTTT 59.236 40.000 13.48 0.00 0.00 2.52
8009 11371 7.875971 ACTGAAAACCACAATAGTTGATCTTC 58.124 34.615 0.00 0.00 0.00 2.87
8023 11385 9.968870 ATAGTTGATCTTCGTTCTAGGTTATTC 57.031 33.333 0.00 0.00 0.00 1.75
8095 11457 0.544833 TTCAACCACGGGGGCTAGTA 60.545 55.000 9.50 0.00 42.05 1.82
8198 11562 8.943594 AACCAAAAACCATAATAGTTGACCTA 57.056 30.769 0.00 0.00 0.00 3.08
8279 11643 6.183360 CCGTTTGTGTTTCAGAGTTTCTAGTT 60.183 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.880027 CCAACCTTAGCTGACACCAAC 59.120 52.381 0.00 0.00 0.00 3.77
9 10 2.644798 ACTCATGTTCCCAACCTTAGCT 59.355 45.455 0.00 0.00 0.00 3.32
78 79 4.504689 GGGCTCTTCTATTAAGCATGCTCT 60.505 45.833 22.93 13.67 37.78 4.09
79 80 3.750652 GGGCTCTTCTATTAAGCATGCTC 59.249 47.826 22.93 3.17 37.78 4.26
80 81 3.749226 GGGCTCTTCTATTAAGCATGCT 58.251 45.455 16.30 16.30 37.78 3.79
81 82 2.481952 CGGGCTCTTCTATTAAGCATGC 59.518 50.000 10.51 10.51 37.78 4.06
82 83 3.733337 ACGGGCTCTTCTATTAAGCATG 58.267 45.455 0.00 0.00 37.78 4.06
83 84 4.130118 CAACGGGCTCTTCTATTAAGCAT 58.870 43.478 0.00 0.00 37.78 3.79
84 85 3.531538 CAACGGGCTCTTCTATTAAGCA 58.468 45.455 0.00 0.00 37.78 3.91
85 86 2.288186 GCAACGGGCTCTTCTATTAAGC 59.712 50.000 0.00 0.00 40.25 3.09
86 87 2.872858 GGCAACGGGCTCTTCTATTAAG 59.127 50.000 1.32 0.00 44.01 1.85
87 88 2.914059 GGCAACGGGCTCTTCTATTAA 58.086 47.619 1.32 0.00 44.01 1.40
88 89 2.614829 GGCAACGGGCTCTTCTATTA 57.385 50.000 1.32 0.00 44.01 0.98
89 90 3.478540 GGCAACGGGCTCTTCTATT 57.521 52.632 1.32 0.00 44.01 1.73
110 111 4.194640 ACAAATGTGGCACTAGCATAGAG 58.805 43.478 19.83 1.99 42.77 2.43
111 112 4.220693 ACAAATGTGGCACTAGCATAGA 57.779 40.909 19.83 0.00 42.77 1.98
113 114 4.078537 ACAACAAATGTGGCACTAGCATA 58.921 39.130 19.83 0.00 41.93 3.14
114 115 2.892852 ACAACAAATGTGGCACTAGCAT 59.107 40.909 19.83 0.26 41.93 3.79
115 116 2.305928 ACAACAAATGTGGCACTAGCA 58.694 42.857 19.83 0.00 41.93 3.49
123 124 3.157087 AGGAAGGCTACAACAAATGTGG 58.843 45.455 0.00 0.00 43.77 4.17
125 126 8.644374 TTTTATAGGAAGGCTACAACAAATGT 57.356 30.769 0.00 0.00 46.36 2.71
126 127 8.739972 ACTTTTATAGGAAGGCTACAACAAATG 58.260 33.333 0.00 0.00 0.00 2.32
127 128 8.879427 ACTTTTATAGGAAGGCTACAACAAAT 57.121 30.769 0.00 0.00 0.00 2.32
128 129 9.223099 GTACTTTTATAGGAAGGCTACAACAAA 57.777 33.333 0.00 0.00 0.00 2.83
129 130 8.599792 AGTACTTTTATAGGAAGGCTACAACAA 58.400 33.333 0.00 0.00 0.00 2.83
130 131 8.142485 AGTACTTTTATAGGAAGGCTACAACA 57.858 34.615 0.00 0.00 0.00 3.33
131 132 8.255905 TGAGTACTTTTATAGGAAGGCTACAAC 58.744 37.037 0.00 0.00 0.00 3.32
132 133 8.370266 TGAGTACTTTTATAGGAAGGCTACAA 57.630 34.615 0.00 0.00 0.00 2.41
148 149 9.843334 GTAGCGAGCTTATTATATGAGTACTTT 57.157 33.333 1.86 0.00 0.00 2.66
149 150 9.011095 TGTAGCGAGCTTATTATATGAGTACTT 57.989 33.333 1.86 0.00 0.00 2.24
152 153 8.788325 TCTGTAGCGAGCTTATTATATGAGTA 57.212 34.615 1.86 0.00 0.00 2.59
153 154 7.689446 TCTGTAGCGAGCTTATTATATGAGT 57.311 36.000 1.86 0.00 0.00 3.41
156 157 8.963130 GCTTATCTGTAGCGAGCTTATTATATG 58.037 37.037 1.86 2.01 0.00 1.78
157 158 8.908903 AGCTTATCTGTAGCGAGCTTATTATAT 58.091 33.333 1.86 0.00 40.55 0.86
158 159 8.282455 AGCTTATCTGTAGCGAGCTTATTATA 57.718 34.615 1.86 0.00 40.55 0.98
159 160 7.164230 AGCTTATCTGTAGCGAGCTTATTAT 57.836 36.000 1.86 0.00 40.55 1.28
160 161 6.576662 AGCTTATCTGTAGCGAGCTTATTA 57.423 37.500 1.86 0.00 40.55 0.98
161 162 5.461032 AGCTTATCTGTAGCGAGCTTATT 57.539 39.130 1.86 0.00 40.55 1.40
162 163 6.767524 ATAGCTTATCTGTAGCGAGCTTAT 57.232 37.500 1.86 0.00 43.02 1.73
163 164 7.683437 TTATAGCTTATCTGTAGCGAGCTTA 57.317 36.000 1.86 0.00 43.02 3.09
164 165 6.576662 TTATAGCTTATCTGTAGCGAGCTT 57.423 37.500 1.86 0.00 43.02 3.74
165 166 6.767524 ATTATAGCTTATCTGTAGCGAGCT 57.232 37.500 2.25 2.25 45.01 4.09
179 180 8.926715 CATGCATGCATTGAATATTATAGCTT 57.073 30.769 30.32 1.13 33.90 3.74
206 207 1.613437 ACGTTTCCTTTGCCCATCTTG 59.387 47.619 0.00 0.00 0.00 3.02
207 208 1.995376 ACGTTTCCTTTGCCCATCTT 58.005 45.000 0.00 0.00 0.00 2.40
208 209 2.871096 TACGTTTCCTTTGCCCATCT 57.129 45.000 0.00 0.00 0.00 2.90
209 210 5.298276 TCAATATACGTTTCCTTTGCCCATC 59.702 40.000 0.00 0.00 0.00 3.51
210 211 5.197451 TCAATATACGTTTCCTTTGCCCAT 58.803 37.500 0.00 0.00 0.00 4.00
212 213 5.767816 ATCAATATACGTTTCCTTTGCCC 57.232 39.130 0.00 0.00 0.00 5.36
213 214 5.977129 CCAATCAATATACGTTTCCTTTGCC 59.023 40.000 0.00 0.00 0.00 4.52
214 215 5.458779 GCCAATCAATATACGTTTCCTTTGC 59.541 40.000 0.00 0.00 0.00 3.68
215 216 6.795399 AGCCAATCAATATACGTTTCCTTTG 58.205 36.000 0.00 0.00 0.00 2.77
216 217 7.093945 ACAAGCCAATCAATATACGTTTCCTTT 60.094 33.333 0.00 0.00 0.00 3.11
217 218 6.377146 ACAAGCCAATCAATATACGTTTCCTT 59.623 34.615 0.00 0.00 0.00 3.36
218 219 5.885912 ACAAGCCAATCAATATACGTTTCCT 59.114 36.000 0.00 0.00 0.00 3.36
219 220 6.131544 ACAAGCCAATCAATATACGTTTCC 57.868 37.500 0.00 0.00 0.00 3.13
221 222 8.500753 TTCTACAAGCCAATCAATATACGTTT 57.499 30.769 0.00 0.00 0.00 3.60
222 223 8.500753 TTTCTACAAGCCAATCAATATACGTT 57.499 30.769 0.00 0.00 0.00 3.99
223 224 8.677148 ATTTCTACAAGCCAATCAATATACGT 57.323 30.769 0.00 0.00 0.00 3.57
227 228 8.292448 CGCTTATTTCTACAAGCCAATCAATAT 58.708 33.333 1.06 0.00 43.40 1.28
228 229 7.282224 ACGCTTATTTCTACAAGCCAATCAATA 59.718 33.333 1.06 0.00 43.40 1.90
229 230 6.095440 ACGCTTATTTCTACAAGCCAATCAAT 59.905 34.615 1.06 0.00 43.40 2.57
230 231 5.414454 ACGCTTATTTCTACAAGCCAATCAA 59.586 36.000 1.06 0.00 43.40 2.57
231 232 4.941263 ACGCTTATTTCTACAAGCCAATCA 59.059 37.500 1.06 0.00 43.40 2.57
232 233 5.294552 AGACGCTTATTTCTACAAGCCAATC 59.705 40.000 1.06 0.00 43.40 2.67
233 234 5.065218 CAGACGCTTATTTCTACAAGCCAAT 59.935 40.000 1.06 0.00 43.40 3.16
235 236 3.932710 CAGACGCTTATTTCTACAAGCCA 59.067 43.478 1.06 0.00 43.40 4.75
236 237 3.933332 ACAGACGCTTATTTCTACAAGCC 59.067 43.478 1.06 0.00 43.40 4.35
237 238 4.865365 AGACAGACGCTTATTTCTACAAGC 59.135 41.667 0.00 0.00 42.98 4.01
238 239 6.952935 AAGACAGACGCTTATTTCTACAAG 57.047 37.500 0.00 0.00 0.00 3.16
240 241 7.600065 ACTAAAGACAGACGCTTATTTCTACA 58.400 34.615 0.00 0.00 0.00 2.74
241 242 7.969508 AGACTAAAGACAGACGCTTATTTCTAC 59.030 37.037 0.00 0.00 0.00 2.59
242 243 8.053026 AGACTAAAGACAGACGCTTATTTCTA 57.947 34.615 0.00 0.00 0.00 2.10
243 244 6.926313 AGACTAAAGACAGACGCTTATTTCT 58.074 36.000 0.00 0.00 0.00 2.52
244 245 7.449027 CAAGACTAAAGACAGACGCTTATTTC 58.551 38.462 0.00 0.00 0.00 2.17
245 246 6.128526 GCAAGACTAAAGACAGACGCTTATTT 60.129 38.462 0.00 0.00 0.00 1.40
247 248 4.865365 GCAAGACTAAAGACAGACGCTTAT 59.135 41.667 0.00 0.00 0.00 1.73
248 249 4.235360 GCAAGACTAAAGACAGACGCTTA 58.765 43.478 0.00 0.00 0.00 3.09
252 253 2.731976 GTGGCAAGACTAAAGACAGACG 59.268 50.000 0.00 0.00 0.00 4.18
253 254 3.067833 GGTGGCAAGACTAAAGACAGAC 58.932 50.000 0.00 0.00 0.00 3.51
254 255 2.288825 CGGTGGCAAGACTAAAGACAGA 60.289 50.000 0.00 0.00 0.00 3.41
255 256 2.069273 CGGTGGCAAGACTAAAGACAG 58.931 52.381 0.00 0.00 0.00 3.51
256 257 1.270625 CCGGTGGCAAGACTAAAGACA 60.271 52.381 0.00 0.00 0.00 3.41
257 258 1.439679 CCGGTGGCAAGACTAAAGAC 58.560 55.000 0.00 0.00 0.00 3.01
258 259 3.927555 CCGGTGGCAAGACTAAAGA 57.072 52.632 0.00 0.00 0.00 2.52
277 278 1.773054 GACATCGAGCCAGCATGCAG 61.773 60.000 21.98 12.49 31.97 4.41
280 281 0.866427 GATGACATCGAGCCAGCATG 59.134 55.000 0.00 0.00 0.00 4.06
282 283 4.842292 GATGACATCGAGCCAGCA 57.158 55.556 0.00 0.00 0.00 4.41
291 292 3.679980 ACAACACAAGCTACGATGACATC 59.320 43.478 5.28 5.28 0.00 3.06
292 293 3.664107 ACAACACAAGCTACGATGACAT 58.336 40.909 0.00 0.00 0.00 3.06
293 294 3.106242 ACAACACAAGCTACGATGACA 57.894 42.857 0.00 0.00 0.00 3.58
294 295 3.060895 GCTACAACACAAGCTACGATGAC 59.939 47.826 0.00 0.00 35.80 3.06
295 296 3.250744 GCTACAACACAAGCTACGATGA 58.749 45.455 0.00 0.00 35.80 2.92
296 297 2.348666 GGCTACAACACAAGCTACGATG 59.651 50.000 0.00 0.00 38.80 3.84
297 298 2.618053 GGCTACAACACAAGCTACGAT 58.382 47.619 0.00 0.00 38.80 3.73
298 299 1.337447 GGGCTACAACACAAGCTACGA 60.337 52.381 0.00 0.00 38.80 3.43
299 300 1.076332 GGGCTACAACACAAGCTACG 58.924 55.000 0.00 0.00 38.80 3.51
300 301 2.178912 TGGGCTACAACACAAGCTAC 57.821 50.000 0.00 0.00 38.80 3.58
301 302 2.552155 CCTTGGGCTACAACACAAGCTA 60.552 50.000 0.96 0.00 39.09 3.32
302 303 1.609208 CTTGGGCTACAACACAAGCT 58.391 50.000 0.00 0.00 38.80 3.74
303 304 0.598065 CCTTGGGCTACAACACAAGC 59.402 55.000 0.96 0.00 39.09 4.01
305 306 2.969821 ATCCTTGGGCTACAACACAA 57.030 45.000 0.00 0.00 34.76 3.33
309 310 3.118038 TCCATGTATCCTTGGGCTACAAC 60.118 47.826 4.70 0.00 36.71 3.32
313 314 3.242867 CTCTCCATGTATCCTTGGGCTA 58.757 50.000 0.00 0.00 36.71 3.93
314 315 2.053244 CTCTCCATGTATCCTTGGGCT 58.947 52.381 0.00 0.00 36.71 5.19
316 317 1.072965 GGCTCTCCATGTATCCTTGGG 59.927 57.143 0.00 0.00 36.71 4.12
317 318 1.072965 GGGCTCTCCATGTATCCTTGG 59.927 57.143 0.00 0.00 37.26 3.61
318 319 1.270518 CGGGCTCTCCATGTATCCTTG 60.271 57.143 0.00 0.00 34.36 3.61
319 320 1.051812 CGGGCTCTCCATGTATCCTT 58.948 55.000 0.00 0.00 34.36 3.36
320 321 1.476007 GCGGGCTCTCCATGTATCCT 61.476 60.000 0.00 0.00 34.36 3.24
321 322 1.004440 GCGGGCTCTCCATGTATCC 60.004 63.158 0.00 0.00 34.36 2.59
322 323 0.037790 GAGCGGGCTCTCCATGTATC 60.038 60.000 13.25 0.00 39.80 2.24
323 324 2.053618 GAGCGGGCTCTCCATGTAT 58.946 57.895 13.25 0.00 39.80 2.29
324 325 3.538614 GAGCGGGCTCTCCATGTA 58.461 61.111 13.25 0.00 39.80 2.29
330 331 2.762043 AGAAGGGAGCGGGCTCTC 60.762 66.667 19.14 16.11 43.61 3.20
331 332 2.762043 GAGAAGGGAGCGGGCTCT 60.762 66.667 19.14 0.64 42.38 4.09
332 333 2.762043 AGAGAAGGGAGCGGGCTC 60.762 66.667 12.17 12.17 42.04 4.70
333 334 2.762043 GAGAGAAGGGAGCGGGCT 60.762 66.667 0.00 0.00 0.00 5.19
334 335 2.762043 AGAGAGAAGGGAGCGGGC 60.762 66.667 0.00 0.00 0.00 6.13
335 336 0.686112 AAGAGAGAGAAGGGAGCGGG 60.686 60.000 0.00 0.00 0.00 6.13
336 337 0.459489 CAAGAGAGAGAAGGGAGCGG 59.541 60.000 0.00 0.00 0.00 5.52
337 338 0.179113 GCAAGAGAGAGAAGGGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
340 341 2.183679 GAAGGCAAGAGAGAGAAGGGA 58.816 52.381 0.00 0.00 0.00 4.20
341 342 2.168313 GAGAAGGCAAGAGAGAGAAGGG 59.832 54.545 0.00 0.00 0.00 3.95
342 343 3.099141 AGAGAAGGCAAGAGAGAGAAGG 58.901 50.000 0.00 0.00 0.00 3.46
343 344 4.806640 AAGAGAAGGCAAGAGAGAGAAG 57.193 45.455 0.00 0.00 0.00 2.85
344 345 4.020662 GGAAAGAGAAGGCAAGAGAGAGAA 60.021 45.833 0.00 0.00 0.00 2.87
345 346 3.513515 GGAAAGAGAAGGCAAGAGAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
346 347 3.515104 AGGAAAGAGAAGGCAAGAGAGAG 59.485 47.826 0.00 0.00 0.00 3.20
347 348 3.513515 GAGGAAAGAGAAGGCAAGAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
348 349 3.369366 GGAGGAAAGAGAAGGCAAGAGAG 60.369 52.174 0.00 0.00 0.00 3.20
350 351 2.304180 TGGAGGAAAGAGAAGGCAAGAG 59.696 50.000 0.00 0.00 0.00 2.85
352 353 2.867109 TGGAGGAAAGAGAAGGCAAG 57.133 50.000 0.00 0.00 0.00 4.01
354 355 3.814504 AATTGGAGGAAAGAGAAGGCA 57.185 42.857 0.00 0.00 0.00 4.75
355 356 4.080299 TCCTAATTGGAGGAAAGAGAAGGC 60.080 45.833 0.00 0.00 42.90 4.35
371 372 6.211184 TGTTCCACATCAGCAAAATCCTAATT 59.789 34.615 0.00 0.00 0.00 1.40
372 373 5.716228 TGTTCCACATCAGCAAAATCCTAAT 59.284 36.000 0.00 0.00 0.00 1.73
373 374 5.076182 TGTTCCACATCAGCAAAATCCTAA 58.924 37.500 0.00 0.00 0.00 2.69
374 375 4.661222 TGTTCCACATCAGCAAAATCCTA 58.339 39.130 0.00 0.00 0.00 2.94
375 376 3.499338 TGTTCCACATCAGCAAAATCCT 58.501 40.909 0.00 0.00 0.00 3.24
387 388 4.910304 AGGAGGCTATAAGATGTTCCACAT 59.090 41.667 0.00 0.00 42.43 3.21
388 389 4.101585 CAGGAGGCTATAAGATGTTCCACA 59.898 45.833 0.00 0.00 0.00 4.17
389 390 4.345257 TCAGGAGGCTATAAGATGTTCCAC 59.655 45.833 0.00 0.00 0.00 4.02
390 391 4.556697 TCAGGAGGCTATAAGATGTTCCA 58.443 43.478 0.00 0.00 0.00 3.53
391 392 4.591072 ACTCAGGAGGCTATAAGATGTTCC 59.409 45.833 0.83 0.00 0.00 3.62
393 394 5.777732 CCTACTCAGGAGGCTATAAGATGTT 59.222 44.000 0.00 0.00 45.91 2.71
394 395 5.075205 TCCTACTCAGGAGGCTATAAGATGT 59.925 44.000 0.00 0.00 46.58 3.06
396 397 5.869540 TCCTACTCAGGAGGCTATAAGAT 57.130 43.478 0.00 0.00 46.58 2.40
418 419 0.861155 ATGGGACGGAGGGAGTAGAT 59.139 55.000 0.00 0.00 0.00 1.98
420 421 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
422 423 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
423 424 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
424 425 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
425 426 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
426 427 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
427 428 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
429 430 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
430 431 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
431 432 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
432 433 9.675464 AGTCAAAAACGTTCTTATATTATGGGA 57.325 29.630 0.00 0.00 0.00 4.37
463 464 7.116948 TGTCAAAAACATTCTTTCTCGCAAAAA 59.883 29.630 0.00 0.00 31.20 1.94
464 465 6.587990 TGTCAAAAACATTCTTTCTCGCAAAA 59.412 30.769 0.00 0.00 31.20 2.44
465 466 6.096036 TGTCAAAAACATTCTTTCTCGCAAA 58.904 32.000 0.00 0.00 31.20 3.68
479 480 9.705471 CGTTTTACTACACTAATGTCAAAAACA 57.295 29.630 15.74 0.00 40.50 2.83
480 481 9.706846 ACGTTTTACTACACTAATGTCAAAAAC 57.293 29.630 9.79 9.79 40.48 2.43
482 483 9.919348 GAACGTTTTACTACACTAATGTCAAAA 57.081 29.630 0.46 0.00 40.48 2.44
484 485 8.876275 AGAACGTTTTACTACACTAATGTCAA 57.124 30.769 0.46 0.00 40.48 3.18
485 486 8.876275 AAGAACGTTTTACTACACTAATGTCA 57.124 30.769 0.46 0.00 40.48 3.58
502 503 8.953313 CCCTTTGTCCTAAAATATAAGAACGTT 58.047 33.333 0.00 0.00 0.00 3.99
516 517 8.208903 GCAAGTATAATACTCCCTTTGTCCTAA 58.791 37.037 0.00 0.00 38.26 2.69
517 518 7.567622 AGCAAGTATAATACTCCCTTTGTCCTA 59.432 37.037 0.00 0.00 38.26 2.94
518 519 6.387220 AGCAAGTATAATACTCCCTTTGTCCT 59.613 38.462 0.00 0.00 38.26 3.85
519 520 6.592870 AGCAAGTATAATACTCCCTTTGTCC 58.407 40.000 0.00 0.00 38.26 4.02
521 522 7.125811 TGAGAGCAAGTATAATACTCCCTTTGT 59.874 37.037 0.00 0.00 38.26 2.83
523 524 7.125811 TGTGAGAGCAAGTATAATACTCCCTTT 59.874 37.037 0.00 0.00 38.26 3.11
525 526 6.136857 TGTGAGAGCAAGTATAATACTCCCT 58.863 40.000 0.00 0.00 38.26 4.20
526 527 6.406692 TGTGAGAGCAAGTATAATACTCCC 57.593 41.667 0.00 0.00 38.26 4.30
527 528 9.413048 GTAATGTGAGAGCAAGTATAATACTCC 57.587 37.037 0.00 0.00 38.26 3.85
528 529 9.967346 TGTAATGTGAGAGCAAGTATAATACTC 57.033 33.333 0.00 0.00 38.26 2.59
532 533 8.982685 CGATTGTAATGTGAGAGCAAGTATAAT 58.017 33.333 0.00 0.00 0.00 1.28
535 536 6.341316 ACGATTGTAATGTGAGAGCAAGTAT 58.659 36.000 0.00 0.00 0.00 2.12
537 538 4.569943 ACGATTGTAATGTGAGAGCAAGT 58.430 39.130 0.00 0.00 0.00 3.16
538 539 5.319139 CAACGATTGTAATGTGAGAGCAAG 58.681 41.667 0.00 0.00 0.00 4.01
539 540 4.378356 GCAACGATTGTAATGTGAGAGCAA 60.378 41.667 0.00 0.00 0.00 3.91
540 541 3.125146 GCAACGATTGTAATGTGAGAGCA 59.875 43.478 0.00 0.00 0.00 4.26
542 543 4.436050 GGTGCAACGATTGTAATGTGAGAG 60.436 45.833 0.00 0.00 38.12 3.20
543 544 3.435327 GGTGCAACGATTGTAATGTGAGA 59.565 43.478 0.00 0.00 38.12 3.27
544 545 3.426159 GGGTGCAACGATTGTAATGTGAG 60.426 47.826 0.00 0.00 38.12 3.51
545 546 2.486203 GGGTGCAACGATTGTAATGTGA 59.514 45.455 0.00 0.00 38.12 3.58
550 722 2.422597 CAGAGGGTGCAACGATTGTAA 58.577 47.619 0.00 0.00 38.12 2.41
593 766 2.665649 ATTGACCGTCTATGCGAACA 57.334 45.000 0.00 0.00 0.00 3.18
676 849 1.964373 GGTGTTCGGTGGCGTGAAT 60.964 57.895 0.00 0.00 0.00 2.57
731 909 1.447317 ATTGCATGTCGCCGGATTCC 61.447 55.000 5.05 0.00 41.33 3.01
732 910 0.317269 CATTGCATGTCGCCGGATTC 60.317 55.000 5.05 0.00 41.33 2.52
733 911 1.729276 CATTGCATGTCGCCGGATT 59.271 52.632 5.05 0.00 41.33 3.01
734 912 2.837883 GCATTGCATGTCGCCGGAT 61.838 57.895 5.05 0.00 41.33 4.18
735 913 3.507924 GCATTGCATGTCGCCGGA 61.508 61.111 5.05 0.00 41.33 5.14
736 914 3.339539 TTGCATTGCATGTCGCCGG 62.340 57.895 12.95 0.00 38.76 6.13
793 971 1.299926 GTGTCACGTCCAGCTTCGT 60.300 57.895 3.07 3.07 40.99 3.85
811 989 1.332195 TGGGATGAGCGATAGTCCTG 58.668 55.000 4.12 0.00 39.35 3.86
816 994 8.204160 TGGTATAAATATTGGGATGAGCGATAG 58.796 37.037 0.00 0.00 0.00 2.08
817 995 7.985184 GTGGTATAAATATTGGGATGAGCGATA 59.015 37.037 0.00 0.00 0.00 2.92
821 999 6.485171 AGGTGGTATAAATATTGGGATGAGC 58.515 40.000 0.00 0.00 0.00 4.26
878 1056 2.721274 TGATTTGTGTTGAATGGCCG 57.279 45.000 0.00 0.00 0.00 6.13
904 1082 2.547595 AAGGGTGGTGTGATGGGGG 61.548 63.158 0.00 0.00 0.00 5.40
1094 1272 2.121963 ACCCCAGGTTGAGCAGGA 60.122 61.111 0.00 0.00 27.29 3.86
1095 1273 2.034687 CACCCCAGGTTGAGCAGG 59.965 66.667 0.00 0.00 31.02 4.85
1626 1807 1.748879 GCAGCCGCCAATGTTCCTA 60.749 57.895 0.00 0.00 0.00 2.94
1691 1872 4.098196 GGAAGAACCGCTTATCAGAGTACT 59.902 45.833 0.00 0.00 36.83 2.73
1830 2021 1.737793 CCAAAGATGGCCTCGTTACAC 59.262 52.381 3.32 0.00 40.58 2.90
1886 2077 4.868171 TGGGAACTCGTCGATAAAAATCTG 59.132 41.667 0.00 0.00 0.00 2.90
1962 2532 6.715344 TTTGCAACGTAGGACTAATAACTG 57.285 37.500 0.00 0.00 0.00 3.16
2009 2624 3.049708 ACGTGAAGCTTAGGGGTAAAC 57.950 47.619 0.00 0.00 0.00 2.01
2022 2637 0.100325 TTGCTGCCACAAACGTGAAG 59.900 50.000 0.00 0.00 36.43 3.02
2051 2666 8.984764 GGGGTAAAAATGTGAAAAATCTGTTAC 58.015 33.333 0.00 0.00 0.00 2.50
2152 2767 9.823647 TTTAGCAGATTTTTCACATTTTTACCA 57.176 25.926 0.00 0.00 0.00 3.25
2341 2995 3.015675 TGCACATAATCTGGCCAATCA 57.984 42.857 7.01 0.00 0.00 2.57
2396 3050 7.278875 ACTAATTCTCCATGAAGTCCTCAATC 58.721 38.462 0.00 0.00 37.67 2.67
2452 3111 3.741029 CGGAGGATCGAAAGCTGAA 57.259 52.632 0.00 0.00 34.37 3.02
2470 3129 7.176589 TCCAAATGTACAAAAATATGACCCC 57.823 36.000 0.00 0.00 0.00 4.95
2514 3173 9.971922 CAAAAATAGAGAACTTCAAGGTTCAAT 57.028 29.630 7.61 0.00 45.52 2.57
2549 3243 6.047511 TGGTGCAAATTAACATGCCTTTAT 57.952 33.333 10.78 0.00 41.87 1.40
2562 3256 1.234615 CCCGACGACTGGTGCAAATT 61.235 55.000 0.00 0.00 0.00 1.82
2569 3263 4.309950 GCCAACCCGACGACTGGT 62.310 66.667 0.00 0.00 35.18 4.00
2575 3269 1.164041 AAGTTCAAGCCAACCCGACG 61.164 55.000 0.00 0.00 0.00 5.12
2577 3271 2.642154 TAAAGTTCAAGCCAACCCGA 57.358 45.000 0.00 0.00 0.00 5.14
2638 3334 8.492673 AACTTTCAATTGGAACCTTTTTCTTC 57.507 30.769 5.42 0.00 34.56 2.87
2657 3363 5.923684 AGATCTGAACTGAAGACGAACTTTC 59.076 40.000 0.00 0.00 39.13 2.62
3274 4244 9.561069 ACAACTATGAAAACATGTCTACTTCTT 57.439 29.630 0.00 1.86 0.00 2.52
3594 4601 3.719268 ACCCATATCTCAAGCACACAA 57.281 42.857 0.00 0.00 0.00 3.33
3891 4931 2.827642 GCACATGCTCCTGCCTCC 60.828 66.667 0.00 0.00 38.71 4.30
4291 5392 6.142817 ACACAGACGCAAACAAAGATTAATC 58.857 36.000 7.41 7.41 0.00 1.75
4564 5670 1.537202 GGCAACTTGGTGATCAGTGAC 59.463 52.381 0.00 0.00 0.00 3.67
4887 6002 7.410174 AGGATATTTTCCCACATGTCAAGTAA 58.590 34.615 0.00 0.00 46.81 2.24
5542 7116 6.293735 CGGTAATTTACAGCACCAAGAAAAGA 60.294 38.462 8.73 0.00 0.00 2.52
5757 7440 6.944862 AGATTTTCTGGAGAAGCATAAACAGT 59.055 34.615 0.00 0.00 35.21 3.55
5758 7441 7.388460 AGATTTTCTGGAGAAGCATAAACAG 57.612 36.000 0.00 0.00 35.21 3.16
5827 9112 5.878406 TGAACCATTAAAGCCTTTTTCCA 57.122 34.783 0.00 0.00 0.00 3.53
5828 9113 6.530181 CGTATGAACCATTAAAGCCTTTTTCC 59.470 38.462 0.00 0.00 0.00 3.13
5939 9276 2.170397 TCCATGCCTGTACAATCGACAT 59.830 45.455 0.00 0.00 0.00 3.06
6003 9340 5.106712 GGCTTGTATTCTTCACGATTCAACA 60.107 40.000 0.00 0.00 0.00 3.33
6008 9345 4.832248 TCTGGCTTGTATTCTTCACGATT 58.168 39.130 0.00 0.00 0.00 3.34
6603 9957 5.410355 AGGTTGTTTTACTATAGCGACCA 57.590 39.130 13.31 0.00 36.37 4.02
6779 10133 4.715534 TCTTGAACCACATGAAAGGGTA 57.284 40.909 0.00 0.00 33.71 3.69
6937 10291 7.709182 AGCAAAACATTTCCCTAAGTTTGTAAC 59.291 33.333 0.00 0.00 34.70 2.50
7019 10378 5.053145 ACTTAGCTTATCAGAAAGGATGCG 58.947 41.667 0.00 0.00 0.00 4.73
7080 10439 8.321005 CGTCATGTACTTTGTGTATTCTATGTG 58.679 37.037 0.00 0.00 33.23 3.21
7093 10452 1.732259 GGTGGAGCGTCATGTACTTTG 59.268 52.381 0.00 0.00 0.00 2.77
7105 10464 1.068741 GGGATGTAGTTAGGTGGAGCG 59.931 57.143 0.00 0.00 0.00 5.03
7112 10471 5.045869 TCAACAAAGAGGGGATGTAGTTAGG 60.046 44.000 0.00 0.00 0.00 2.69
7228 10587 2.087646 GGTCTTCCCTCTCATTTGCAC 58.912 52.381 0.00 0.00 0.00 4.57
7247 10606 5.422214 AGCCTCTATATATTGGTTTCCGG 57.578 43.478 0.00 0.00 0.00 5.14
7388 10747 5.612725 TGATTACCTATGTGACAGCATCA 57.387 39.130 0.00 0.00 33.79 3.07
7514 10873 5.049818 GTGAGTGTCAGAATTTCTTGACCAG 60.050 44.000 18.20 1.47 0.00 4.00
7989 11351 6.710744 AGAACGAAGATCAACTATTGTGGTTT 59.289 34.615 0.00 0.00 0.00 3.27
8009 11371 7.095270 ACAACTTACCTGAATAACCTAGAACG 58.905 38.462 0.00 0.00 0.00 3.95
8023 11385 6.407202 ACCATAGCTAAGAACAACTTACCTG 58.593 40.000 0.00 0.00 39.72 4.00
8080 11442 2.364710 GGTACTAGCCCCCGTGGT 60.365 66.667 0.00 0.00 36.04 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.