Multiple sequence alignment - TraesCS1D01G156600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G156600 chr1D 100.000 3664 0 0 1 3664 220885042 220881379 0.000000e+00 6767.0
1 TraesCS1D01G156600 chr1D 100.000 3105 0 0 4060 7164 220880983 220877879 0.000000e+00 5734.0
2 TraesCS1D01G156600 chr1D 93.438 640 26 11 6537 7164 300707214 300706579 0.000000e+00 935.0
3 TraesCS1D01G156600 chr1D 96.703 91 1 1 6284 6372 355171571 355171661 4.480000e-32 150.0
4 TraesCS1D01G156600 chr1D 92.308 39 2 1 4546 4584 19039726 19039689 4.000000e-03 54.7
5 TraesCS1D01G156600 chr1B 94.056 2305 70 28 236 2525 317187462 317185210 0.000000e+00 3435.0
6 TraesCS1D01G156600 chr1B 93.781 1399 40 11 4833 6208 317184557 317183183 0.000000e+00 2058.0
7 TraesCS1D01G156600 chr1B 93.136 641 25 14 6536 7164 12600681 12600048 0.000000e+00 922.0
8 TraesCS1D01G156600 chr1B 90.909 682 54 3 4155 4835 616093557 616092883 0.000000e+00 909.0
9 TraesCS1D01G156600 chr1B 86.335 644 65 19 6536 7164 296071225 296071860 0.000000e+00 680.0
10 TraesCS1D01G156600 chr1B 90.933 386 18 3 2912 3280 317184934 317184549 2.980000e-138 503.0
11 TraesCS1D01G156600 chr1B 91.391 302 12 5 2543 2844 317185223 317184936 1.120000e-107 401.0
12 TraesCS1D01G156600 chr1B 96.875 224 7 0 1 224 317187825 317187602 6.790000e-100 375.0
13 TraesCS1D01G156600 chr1B 89.796 245 23 2 3401 3644 616094022 616093779 5.400000e-81 313.0
14 TraesCS1D01G156600 chr1B 86.222 225 21 9 6536 6756 231647002 231646784 1.200000e-57 235.0
15 TraesCS1D01G156600 chr1B 91.860 86 7 0 6452 6537 317177311 317177226 3.510000e-23 121.0
16 TraesCS1D01G156600 chr1B 100.000 44 0 0 6208 6251 317183156 317183113 1.660000e-11 82.4
17 TraesCS1D01G156600 chr1A 91.937 1910 89 29 222 2088 284906493 284904606 0.000000e+00 2614.0
18 TraesCS1D01G156600 chr1A 94.929 1400 41 6 4833 6208 284903618 284902225 0.000000e+00 2165.0
19 TraesCS1D01G156600 chr1A 88.580 648 49 18 6531 7164 374247498 374246862 0.000000e+00 763.0
20 TraesCS1D01G156600 chr1A 87.766 376 13 11 2912 3269 284903986 284903626 6.690000e-110 409.0
21 TraesCS1D01G156600 chr1A 90.066 302 17 5 2543 2844 284904276 284903988 5.250000e-101 379.0
22 TraesCS1D01G156600 chr1A 82.385 369 28 14 2162 2525 284904599 284904263 3.270000e-73 287.0
23 TraesCS1D01G156600 chr1A 89.956 229 12 3 1 224 284906836 284906614 1.180000e-72 285.0
24 TraesCS1D01G156600 chr1A 93.605 172 11 0 6366 6537 284902110 284901939 2.560000e-64 257.0
25 TraesCS1D01G156600 chr1A 88.764 89 2 1 6207 6287 284902199 284902111 1.270000e-17 102.0
26 TraesCS1D01G156600 chr6D 95.352 753 33 2 4080 4832 270594915 270595665 0.000000e+00 1195.0
27 TraesCS1D01G156600 chr6D 93.146 642 25 14 6537 7164 76057959 76058595 0.000000e+00 924.0
28 TraesCS1D01G156600 chr6D 93.872 359 21 1 3281 3639 270593940 270594297 2.270000e-149 540.0
29 TraesCS1D01G156600 chr6D 90.179 112 7 3 6283 6391 89352167 89352277 7.490000e-30 143.0
30 TraesCS1D01G156600 chr3B 94.379 765 28 5 4069 4832 62978885 62978135 0.000000e+00 1160.0
31 TraesCS1D01G156600 chr3B 94.444 360 20 0 3280 3639 62979705 62979346 8.120000e-154 555.0
32 TraesCS1D01G156600 chr3B 85.922 206 16 5 6001 6206 48983880 48983688 2.620000e-49 207.0
33 TraesCS1D01G156600 chr3B 80.108 186 29 7 5039 5219 48984258 48984076 1.620000e-26 132.0
34 TraesCS1D01G156600 chr5D 93.669 774 46 3 4060 4832 511251455 511252226 0.000000e+00 1155.0
35 TraesCS1D01G156600 chr5D 90.385 104 6 3 6270 6370 477322183 477322285 4.510000e-27 134.0
36 TraesCS1D01G156600 chr7A 93.023 774 49 5 4060 4832 75201887 75201118 0.000000e+00 1125.0
37 TraesCS1D01G156600 chr7A 92.208 385 28 2 3281 3664 75202266 75201883 1.760000e-150 544.0
38 TraesCS1D01G156600 chr7A 100.000 29 0 0 2593 2621 63773749 63773777 4.000000e-03 54.7
39 TraesCS1D01G156600 chr4B 91.483 681 53 5 4152 4832 583771301 583771976 0.000000e+00 931.0
40 TraesCS1D01G156600 chr4B 92.857 644 28 13 6535 7164 2011636 2010997 0.000000e+00 918.0
41 TraesCS1D01G156600 chr4B 87.105 380 40 7 3281 3659 583770522 583770893 8.590000e-114 422.0
42 TraesCS1D01G156600 chr4B 91.373 255 18 4 4580 4832 665178193 665178445 5.320000e-91 346.0
43 TraesCS1D01G156600 chrUn 92.679 642 31 11 6535 7164 306535900 306536537 0.000000e+00 911.0
44 TraesCS1D01G156600 chr7D 92.331 652 28 16 6527 7164 422207681 422207038 0.000000e+00 907.0
45 TraesCS1D01G156600 chr7D 86.170 564 42 24 6533 7082 215944629 215945170 1.730000e-160 577.0
46 TraesCS1D01G156600 chr7D 86.842 228 20 10 6535 6760 168331952 168332171 5.550000e-61 246.0
47 TraesCS1D01G156600 chr7D 86.957 69 6 3 4312 4378 11941791 11941858 2.770000e-09 75.0
48 TraesCS1D01G156600 chr3D 92.949 624 29 11 6550 7161 246307988 246308608 0.000000e+00 894.0
49 TraesCS1D01G156600 chr3D 92.949 312 19 3 4522 4832 268071440 268071131 1.100000e-122 451.0
50 TraesCS1D01G156600 chr3D 94.636 261 13 1 3281 3540 268096170 268095910 3.110000e-108 403.0
51 TraesCS1D01G156600 chr3D 86.520 319 41 2 3281 3598 613691906 613691589 4.110000e-92 350.0
52 TraesCS1D01G156600 chr3D 93.750 96 4 1 6286 6379 84113415 84113320 7.490000e-30 143.0
53 TraesCS1D01G156600 chr4D 92.332 639 32 13 6537 7164 365181935 365181303 0.000000e+00 893.0
54 TraesCS1D01G156600 chr4D 92.778 360 22 4 3281 3639 454985111 454985467 1.070000e-142 518.0
55 TraesCS1D01G156600 chr2A 90.937 651 30 14 6537 7164 619639489 619640133 0.000000e+00 848.0
56 TraesCS1D01G156600 chr2A 91.509 106 6 2 6268 6370 27327169 27327064 7.490000e-30 143.0
57 TraesCS1D01G156600 chr5A 90.610 639 40 12 6537 7161 531029646 531030278 0.000000e+00 830.0
58 TraesCS1D01G156600 chr5A 89.736 643 44 17 6534 7164 136645364 136645996 0.000000e+00 802.0
59 TraesCS1D01G156600 chr7B 90.484 641 41 10 6537 7164 596744122 596744755 0.000000e+00 828.0
60 TraesCS1D01G156600 chr7B 86.427 361 46 3 3281 3639 706237438 706237797 6.740000e-105 392.0
61 TraesCS1D01G156600 chr7B 79.699 133 9 9 4312 4442 662970541 662970425 5.960000e-11 80.5
62 TraesCS1D01G156600 chr2B 91.111 360 30 2 3281 3638 634154948 634155307 3.000000e-133 486.0
63 TraesCS1D01G156600 chr2B 88.750 320 24 8 4444 4753 634160219 634160536 1.460000e-101 381.0
64 TraesCS1D01G156600 chr2B 96.703 91 0 3 6284 6374 726552214 726552127 1.610000e-31 148.0
65 TraesCS1D01G156600 chr6B 92.784 291 19 2 3281 3570 9469835 9469546 3.090000e-113 420.0
66 TraesCS1D01G156600 chr6B 91.732 254 17 3 4583 4835 9461959 9461709 4.110000e-92 350.0
67 TraesCS1D01G156600 chr6B 97.753 89 0 1 6284 6370 216509846 216509758 1.240000e-32 152.0
68 TraesCS1D01G156600 chr5B 94.792 96 3 2 6286 6379 571189456 571189361 1.610000e-31 148.0
69 TraesCS1D01G156600 chr5B 80.153 131 13 7 4312 4442 8949745 8949628 1.280000e-12 86.1
70 TraesCS1D01G156600 chr4A 93.000 100 3 3 6283 6380 30142352 30142449 7.490000e-30 143.0
71 TraesCS1D01G156600 chr6A 98.551 69 1 0 2845 2913 535988554 535988486 9.760000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G156600 chr1D 220877879 220885042 7163 True 6250.50 6767 100.0000 1 7164 2 chr1D.!!$R3 7163
1 TraesCS1D01G156600 chr1D 300706579 300707214 635 True 935.00 935 93.4380 6537 7164 1 chr1D.!!$R2 627
2 TraesCS1D01G156600 chr1B 317183113 317187825 4712 True 1142.40 3435 94.5060 1 6251 6 chr1B.!!$R4 6250
3 TraesCS1D01G156600 chr1B 12600048 12600681 633 True 922.00 922 93.1360 6536 7164 1 chr1B.!!$R1 628
4 TraesCS1D01G156600 chr1B 296071225 296071860 635 False 680.00 680 86.3350 6536 7164 1 chr1B.!!$F1 628
5 TraesCS1D01G156600 chr1B 616092883 616094022 1139 True 611.00 909 90.3525 3401 4835 2 chr1B.!!$R5 1434
6 TraesCS1D01G156600 chr1A 284901939 284906836 4897 True 812.25 2614 89.9260 1 6537 8 chr1A.!!$R2 6536
7 TraesCS1D01G156600 chr1A 374246862 374247498 636 True 763.00 763 88.5800 6531 7164 1 chr1A.!!$R1 633
8 TraesCS1D01G156600 chr6D 76057959 76058595 636 False 924.00 924 93.1460 6537 7164 1 chr6D.!!$F1 627
9 TraesCS1D01G156600 chr6D 270593940 270595665 1725 False 867.50 1195 94.6120 3281 4832 2 chr6D.!!$F3 1551
10 TraesCS1D01G156600 chr3B 62978135 62979705 1570 True 857.50 1160 94.4115 3280 4832 2 chr3B.!!$R2 1552
11 TraesCS1D01G156600 chr5D 511251455 511252226 771 False 1155.00 1155 93.6690 4060 4832 1 chr5D.!!$F2 772
12 TraesCS1D01G156600 chr7A 75201118 75202266 1148 True 834.50 1125 92.6155 3281 4832 2 chr7A.!!$R1 1551
13 TraesCS1D01G156600 chr4B 2010997 2011636 639 True 918.00 918 92.8570 6535 7164 1 chr4B.!!$R1 629
14 TraesCS1D01G156600 chr4B 583770522 583771976 1454 False 676.50 931 89.2940 3281 4832 2 chr4B.!!$F2 1551
15 TraesCS1D01G156600 chrUn 306535900 306536537 637 False 911.00 911 92.6790 6535 7164 1 chrUn.!!$F1 629
16 TraesCS1D01G156600 chr7D 422207038 422207681 643 True 907.00 907 92.3310 6527 7164 1 chr7D.!!$R1 637
17 TraesCS1D01G156600 chr7D 215944629 215945170 541 False 577.00 577 86.1700 6533 7082 1 chr7D.!!$F3 549
18 TraesCS1D01G156600 chr3D 246307988 246308608 620 False 894.00 894 92.9490 6550 7161 1 chr3D.!!$F1 611
19 TraesCS1D01G156600 chr4D 365181303 365181935 632 True 893.00 893 92.3320 6537 7164 1 chr4D.!!$R1 627
20 TraesCS1D01G156600 chr2A 619639489 619640133 644 False 848.00 848 90.9370 6537 7164 1 chr2A.!!$F1 627
21 TraesCS1D01G156600 chr5A 531029646 531030278 632 False 830.00 830 90.6100 6537 7161 1 chr5A.!!$F2 624
22 TraesCS1D01G156600 chr5A 136645364 136645996 632 False 802.00 802 89.7360 6534 7164 1 chr5A.!!$F1 630
23 TraesCS1D01G156600 chr7B 596744122 596744755 633 False 828.00 828 90.4840 6537 7164 1 chr7B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 669 0.041684 CCCCTTTGATGCCTTCCCTT 59.958 55.000 0.00 0.00 0.0 3.95 F
672 833 0.721483 CTCGCCGCTCAAAAACGAAC 60.721 55.000 0.00 0.00 31.6 3.95 F
2527 2721 0.538746 AAAACGAGGTGCCCGGATTT 60.539 50.000 0.73 0.00 0.0 2.17 F
2550 2744 0.035739 TTTTGAGGGGTACGAGGTGC 59.964 55.000 0.00 0.00 0.0 5.01 F
2883 3077 0.096976 AAATTTCGGACGATGCGCAG 59.903 50.000 18.32 5.51 0.0 5.18 F
3093 3303 0.096976 AAAGAAATCCGCGCGTGATG 59.903 50.000 29.95 13.63 0.0 3.07 F
3584 3815 0.840722 ACCTTCATCTCCCACCGGTT 60.841 55.000 2.97 0.00 0.0 4.44 F
4841 6593 1.134907 GCAATTCACTCAATGCCAGGG 60.135 52.381 0.00 0.00 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2162 0.806868 ACGCTCACCATTCATGCAAG 59.193 50.000 0.00 0.00 0.00 4.01 R
2531 2725 0.035739 GCACCTCGTACCCCTCAAAA 59.964 55.000 0.00 0.00 0.00 2.44 R
3584 3815 3.781307 CCGGAGCAATCCCACCGA 61.781 66.667 0.00 0.00 46.94 4.69 R
4599 6347 5.734031 ATATTTACCAAAAGCTCCCTCCT 57.266 39.130 0.00 0.00 0.00 3.69 R
4841 6593 0.318275 GATCGATCGACCTCCACAGC 60.318 60.000 22.06 0.00 0.00 4.40 R
5085 6849 0.033504 GAAGTCGTTCTCCCTGCACA 59.966 55.000 0.00 0.00 0.00 4.57 R
5642 7406 0.394192 TGCAGCGATCCCATTCCTAG 59.606 55.000 0.00 0.00 0.00 3.02 R
6504 8327 0.166814 AGCATCTTCGCTGCGAAAAC 59.833 50.000 33.30 22.87 45.23 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 38 1.823041 GCTCATGCTCCCTTGAGGC 60.823 63.158 8.17 0.00 41.25 4.70
234 368 0.537188 ACGCTATTCAGGTCCACAGG 59.463 55.000 0.00 0.00 0.00 4.00
265 399 2.047179 GGCTCACTTGACCCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
266 400 2.047179 GCTCACTTGACCCGTCCC 60.047 66.667 0.00 0.00 0.00 4.46
267 401 2.261671 CTCACTTGACCCGTCCCG 59.738 66.667 0.00 0.00 0.00 5.14
268 402 2.522436 TCACTTGACCCGTCCCGT 60.522 61.111 0.00 0.00 0.00 5.28
269 403 2.048503 CACTTGACCCGTCCCGTC 60.049 66.667 0.00 0.00 0.00 4.79
303 437 2.108157 AACTCGAGTGGCGTTGCA 59.892 55.556 20.85 0.00 41.80 4.08
317 451 1.077858 TTGCAGCGGTGATGCCATA 60.078 52.632 20.69 0.00 44.94 2.74
466 610 5.855740 AACGAAAGAAACCAACCCAAATA 57.144 34.783 0.00 0.00 0.00 1.40
499 659 4.263683 CCTGACTTCTTCTTCCCCTTTGAT 60.264 45.833 0.00 0.00 0.00 2.57
508 668 0.850883 TCCCCTTTGATGCCTTCCCT 60.851 55.000 0.00 0.00 0.00 4.20
509 669 0.041684 CCCCTTTGATGCCTTCCCTT 59.958 55.000 0.00 0.00 0.00 3.95
627 787 1.542987 CCGTTCGTTCTTAAACCCCCA 60.543 52.381 0.00 0.00 31.27 4.96
669 830 2.173382 CCTCGCCGCTCAAAAACG 59.827 61.111 0.00 0.00 0.00 3.60
670 831 2.314647 CCTCGCCGCTCAAAAACGA 61.315 57.895 0.00 0.00 0.00 3.85
671 832 1.567537 CTCGCCGCTCAAAAACGAA 59.432 52.632 0.00 0.00 31.60 3.85
672 833 0.721483 CTCGCCGCTCAAAAACGAAC 60.721 55.000 0.00 0.00 31.60 3.95
673 834 2.067039 CGCCGCTCAAAAACGAACG 61.067 57.895 0.00 0.00 0.00 3.95
1113 1284 4.101448 GGCCATCGTGAGGGTGCT 62.101 66.667 0.00 0.00 34.16 4.40
1114 1285 2.512515 GCCATCGTGAGGGTGCTC 60.513 66.667 2.19 0.00 34.16 4.26
1115 1286 2.187946 CCATCGTGAGGGTGCTCC 59.812 66.667 0.00 0.00 0.00 4.70
1116 1287 2.202797 CATCGTGAGGGTGCTCCG 60.203 66.667 0.00 0.00 41.52 4.63
1117 1288 3.461773 ATCGTGAGGGTGCTCCGG 61.462 66.667 0.00 0.00 41.52 5.14
1120 1291 4.459089 GTGAGGGTGCTCCGGCTC 62.459 72.222 0.00 0.00 41.52 4.70
1413 1587 2.757099 GGCAGCCACATCAAGGGG 60.757 66.667 6.55 0.00 46.82 4.79
1935 2109 4.101585 TGCACTAGATTATTACTGCCTGCT 59.898 41.667 0.00 0.00 0.00 4.24
1961 2135 7.686519 TCGATTCTGTTTCGTTTGACTTTTTA 58.313 30.769 0.00 0.00 37.82 1.52
1963 2137 8.618952 CGATTCTGTTTCGTTTGACTTTTTATC 58.381 33.333 0.00 0.00 32.08 1.75
1964 2138 7.886191 TTCTGTTTCGTTTGACTTTTTATCG 57.114 32.000 0.00 0.00 0.00 2.92
1966 2140 6.902948 TCTGTTTCGTTTGACTTTTTATCGTG 59.097 34.615 0.00 0.00 0.00 4.35
1968 2142 7.411274 TGTTTCGTTTGACTTTTTATCGTGAT 58.589 30.769 0.00 0.00 0.00 3.06
1969 2143 7.584847 TGTTTCGTTTGACTTTTTATCGTGATC 59.415 33.333 0.00 0.00 0.00 2.92
1970 2144 5.839188 TCGTTTGACTTTTTATCGTGATCG 58.161 37.500 0.00 0.00 38.55 3.69
1971 2145 5.403166 TCGTTTGACTTTTTATCGTGATCGT 59.597 36.000 0.00 0.00 38.33 3.73
1983 2162 4.914312 TCGTGATCGTTGTTGTTTATCC 57.086 40.909 0.00 0.00 38.33 2.59
2000 2179 1.466856 TCCTTGCATGAATGGTGAGC 58.533 50.000 5.53 0.00 0.00 4.26
2003 2182 2.009051 CTTGCATGAATGGTGAGCGTA 58.991 47.619 0.00 0.00 0.00 4.42
2039 2218 1.338769 ACGCCTTGGGTGTGAATAGTC 60.339 52.381 1.73 0.00 45.43 2.59
2101 2287 5.063564 GGTGCGCATTAGGAGCTAATATTAC 59.936 44.000 15.91 0.00 43.44 1.89
2103 2289 5.100259 GCGCATTAGGAGCTAATATTACGA 58.900 41.667 0.30 0.00 39.47 3.43
2154 2340 9.367444 CTAGTAGTATTTGTCCACTTTTACCTG 57.633 37.037 0.00 0.00 0.00 4.00
2188 2374 4.072131 GAGTTGTTTATGCAGAAGTGGGA 58.928 43.478 0.00 0.00 0.00 4.37
2194 2380 6.919721 TGTTTATGCAGAAGTGGGAAAATAC 58.080 36.000 0.00 0.00 0.00 1.89
2247 2437 5.988561 GCAAAATTAAGTTGGTCATGTGGAA 59.011 36.000 0.00 0.00 0.00 3.53
2449 2643 7.124347 ACTTTAGAAATTCAAATACGACGCA 57.876 32.000 0.00 0.00 0.00 5.24
2494 2688 2.158769 TGAAGGCAGCGATCATACCAAT 60.159 45.455 0.00 0.00 0.00 3.16
2525 2719 1.376812 GAAAACGAGGTGCCCGGAT 60.377 57.895 0.73 0.00 0.00 4.18
2526 2720 0.958876 GAAAACGAGGTGCCCGGATT 60.959 55.000 0.73 0.00 0.00 3.01
2527 2721 0.538746 AAAACGAGGTGCCCGGATTT 60.539 50.000 0.73 0.00 0.00 2.17
2528 2722 0.538746 AAACGAGGTGCCCGGATTTT 60.539 50.000 0.73 0.00 0.00 1.82
2529 2723 0.538746 AACGAGGTGCCCGGATTTTT 60.539 50.000 0.73 0.00 0.00 1.94
2549 2743 2.554370 TTTTTGAGGGGTACGAGGTG 57.446 50.000 0.00 0.00 0.00 4.00
2550 2744 0.035739 TTTTGAGGGGTACGAGGTGC 59.964 55.000 0.00 0.00 0.00 5.01
2551 2745 1.833787 TTTGAGGGGTACGAGGTGCC 61.834 60.000 0.00 0.00 37.58 5.01
2556 2750 3.152400 GGTACGAGGTGCCCGGAT 61.152 66.667 0.73 0.00 32.14 4.18
2722 2916 3.119096 GGCTGGCTCGGTTCGTTC 61.119 66.667 0.00 0.00 0.00 3.95
2723 2917 2.048127 GCTGGCTCGGTTCGTTCT 60.048 61.111 0.00 0.00 0.00 3.01
2724 2918 1.668151 GCTGGCTCGGTTCGTTCTT 60.668 57.895 0.00 0.00 0.00 2.52
2725 2919 1.627550 GCTGGCTCGGTTCGTTCTTC 61.628 60.000 0.00 0.00 0.00 2.87
2726 2920 1.344942 CTGGCTCGGTTCGTTCTTCG 61.345 60.000 0.00 0.00 41.41 3.79
2727 2921 1.372623 GGCTCGGTTCGTTCTTCGT 60.373 57.895 0.00 0.00 40.80 3.85
2728 2922 0.942884 GGCTCGGTTCGTTCTTCGTT 60.943 55.000 0.00 0.00 40.80 3.85
2736 2930 2.943653 GTTCTTCGTTGGCACCCG 59.056 61.111 0.00 0.00 0.00 5.28
2767 2961 4.499023 CGGCGTGTGTGCGTATGC 62.499 66.667 0.00 0.00 43.20 3.14
2784 2978 4.153296 CGTATGCACACTTGTTTGACCATA 59.847 41.667 0.00 0.00 0.00 2.74
2844 3038 2.487918 GCACTGGTGGTGTGTTTCA 58.512 52.632 2.84 0.00 46.86 2.69
2845 3039 0.381801 GCACTGGTGGTGTGTTTCAG 59.618 55.000 2.84 0.00 46.86 3.02
2846 3040 2.016604 GCACTGGTGGTGTGTTTCAGA 61.017 52.381 2.84 0.00 46.86 3.27
2847 3041 2.364632 CACTGGTGGTGTGTTTCAGAA 58.635 47.619 0.00 0.00 40.79 3.02
2848 3042 2.097466 CACTGGTGGTGTGTTTCAGAAC 59.903 50.000 0.00 0.00 40.79 3.01
2849 3043 2.026262 ACTGGTGGTGTGTTTCAGAACT 60.026 45.455 0.00 0.00 36.70 3.01
2850 3044 2.355756 CTGGTGGTGTGTTTCAGAACTG 59.644 50.000 0.00 0.00 36.70 3.16
2851 3045 1.065551 GGTGGTGTGTTTCAGAACTGC 59.934 52.381 0.00 0.00 36.70 4.40
2852 3046 2.017049 GTGGTGTGTTTCAGAACTGCT 58.983 47.619 0.00 0.00 36.70 4.24
2853 3047 3.202906 GTGGTGTGTTTCAGAACTGCTA 58.797 45.455 0.00 0.00 36.70 3.49
2854 3048 3.815401 GTGGTGTGTTTCAGAACTGCTAT 59.185 43.478 0.00 0.00 36.70 2.97
2855 3049 4.994852 GTGGTGTGTTTCAGAACTGCTATA 59.005 41.667 0.00 0.00 36.70 1.31
2856 3050 4.994852 TGGTGTGTTTCAGAACTGCTATAC 59.005 41.667 0.00 0.00 36.70 1.47
2857 3051 4.994852 GGTGTGTTTCAGAACTGCTATACA 59.005 41.667 0.00 0.54 36.70 2.29
2858 3052 5.107065 GGTGTGTTTCAGAACTGCTATACAC 60.107 44.000 17.79 17.79 36.28 2.90
2859 3053 5.465390 GTGTGTTTCAGAACTGCTATACACA 59.535 40.000 19.43 18.55 41.39 3.72
2860 3054 5.465390 TGTGTTTCAGAACTGCTATACACAC 59.535 40.000 17.65 6.39 39.51 3.82
2861 3055 4.684242 TGTTTCAGAACTGCTATACACACG 59.316 41.667 0.00 0.00 36.70 4.49
2862 3056 4.776795 TTCAGAACTGCTATACACACGA 57.223 40.909 0.00 0.00 0.00 4.35
2863 3057 4.092771 TCAGAACTGCTATACACACGAC 57.907 45.455 0.00 0.00 0.00 4.34
2864 3058 3.504520 TCAGAACTGCTATACACACGACA 59.495 43.478 0.00 0.00 0.00 4.35
2865 3059 4.022676 TCAGAACTGCTATACACACGACAA 60.023 41.667 0.00 0.00 0.00 3.18
2866 3060 4.684242 CAGAACTGCTATACACACGACAAA 59.316 41.667 0.00 0.00 0.00 2.83
2867 3061 5.348724 CAGAACTGCTATACACACGACAAAT 59.651 40.000 0.00 0.00 0.00 2.32
2868 3062 5.932303 AGAACTGCTATACACACGACAAATT 59.068 36.000 0.00 0.00 0.00 1.82
2869 3063 6.426937 AGAACTGCTATACACACGACAAATTT 59.573 34.615 0.00 0.00 0.00 1.82
2870 3064 6.165659 ACTGCTATACACACGACAAATTTC 57.834 37.500 0.00 0.00 0.00 2.17
2871 3065 5.163992 ACTGCTATACACACGACAAATTTCG 60.164 40.000 0.00 0.00 44.87 3.46
2872 3066 4.092237 TGCTATACACACGACAAATTTCGG 59.908 41.667 4.68 0.00 43.58 4.30
2873 3067 4.327898 GCTATACACACGACAAATTTCGGA 59.672 41.667 4.68 0.00 43.58 4.55
2874 3068 4.657075 ATACACACGACAAATTTCGGAC 57.343 40.909 4.68 0.00 43.58 4.79
2875 3069 1.259507 ACACACGACAAATTTCGGACG 59.740 47.619 4.68 2.37 43.58 4.79
2876 3070 1.523515 CACACGACAAATTTCGGACGA 59.476 47.619 4.68 0.00 43.58 4.20
2877 3071 2.156891 CACACGACAAATTTCGGACGAT 59.843 45.455 4.68 0.00 43.58 3.73
2878 3072 2.156891 ACACGACAAATTTCGGACGATG 59.843 45.455 4.68 0.00 43.58 3.84
2879 3073 1.127951 ACGACAAATTTCGGACGATGC 59.872 47.619 4.68 0.00 43.58 3.91
2880 3074 1.797964 GACAAATTTCGGACGATGCG 58.202 50.000 0.00 0.00 0.00 4.73
2881 3075 0.179200 ACAAATTTCGGACGATGCGC 60.179 50.000 0.00 0.00 0.00 6.09
2882 3076 0.179202 CAAATTTCGGACGATGCGCA 60.179 50.000 14.96 14.96 0.00 6.09
2883 3077 0.096976 AAATTTCGGACGATGCGCAG 59.903 50.000 18.32 5.51 0.00 5.18
2884 3078 0.739462 AATTTCGGACGATGCGCAGA 60.739 50.000 18.32 2.92 0.00 4.26
2885 3079 1.421410 ATTTCGGACGATGCGCAGAC 61.421 55.000 18.32 11.85 0.00 3.51
2886 3080 4.829518 TCGGACGATGCGCAGACG 62.830 66.667 28.74 28.74 44.07 4.18
2887 3081 4.829518 CGGACGATGCGCAGACGA 62.830 66.667 34.09 6.80 43.93 4.20
2888 3082 2.278857 GGACGATGCGCAGACGAT 60.279 61.111 34.09 22.62 43.93 3.73
2889 3083 1.008881 GGACGATGCGCAGACGATA 60.009 57.895 34.09 5.30 43.93 2.92
2890 3084 0.999228 GGACGATGCGCAGACGATAG 60.999 60.000 34.09 14.96 43.93 2.08
2891 3085 0.999228 GACGATGCGCAGACGATAGG 60.999 60.000 34.09 14.33 43.93 2.57
2907 3101 3.508840 GGCAAATCTGGCCGGACG 61.509 66.667 18.90 9.86 42.39 4.79
2908 3102 2.746277 GCAAATCTGGCCGGACGT 60.746 61.111 18.90 4.87 0.00 4.34
2909 3103 1.448893 GCAAATCTGGCCGGACGTA 60.449 57.895 18.90 0.00 0.00 3.57
2910 3104 1.702491 GCAAATCTGGCCGGACGTAC 61.702 60.000 18.90 3.33 0.00 3.67
2947 3148 1.344438 TGACCATCACAGGACAGACAC 59.656 52.381 0.00 0.00 0.00 3.67
2948 3149 0.687354 ACCATCACAGGACAGACACC 59.313 55.000 0.00 0.00 0.00 4.16
2950 3151 0.979665 CATCACAGGACAGACACCCT 59.020 55.000 0.00 0.00 0.00 4.34
2951 3152 1.349026 CATCACAGGACAGACACCCTT 59.651 52.381 0.00 0.00 0.00 3.95
3024 3231 6.510799 CGTGCTGGAAGATGTGATAAGATTTC 60.511 42.308 0.00 0.00 34.07 2.17
3036 3243 0.322187 AAGATTTCGGTCGGGTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
3093 3303 0.096976 AAAGAAATCCGCGCGTGATG 59.903 50.000 29.95 13.63 0.00 3.07
3195 3412 3.756082 TCCCCCTAATTTGACTTGCAT 57.244 42.857 0.00 0.00 0.00 3.96
3241 3466 3.081804 CCTTGGCCTTTGTCTATTTCGT 58.918 45.455 3.32 0.00 0.00 3.85
3340 3570 4.209307 TGCAGGAACCATACATTAACGA 57.791 40.909 0.00 0.00 0.00 3.85
3349 3579 6.260870 ACCATACATTAACGAAATTGTGCA 57.739 33.333 0.00 0.00 0.00 4.57
3488 3718 2.879462 GCGACGCCGTTAGACAGG 60.879 66.667 9.14 0.00 38.24 4.00
3584 3815 0.840722 ACCTTCATCTCCCACCGGTT 60.841 55.000 2.97 0.00 0.00 4.44
4705 6454 6.875753 TGTCATAAACGTACTTAAAACGGTG 58.124 36.000 12.92 7.40 39.87 4.94
4731 6481 5.766150 ACAAGCAACTAGTGTATTTTGCA 57.234 34.783 15.38 0.00 45.54 4.08
4789 6541 4.776795 ATTTCGTAAATGTGTGGTTCCC 57.223 40.909 0.00 0.00 0.00 3.97
4838 6590 3.747854 TTTGCAATTCACTCAATGCCA 57.252 38.095 0.00 0.00 0.00 4.92
4839 6591 3.306917 TTGCAATTCACTCAATGCCAG 57.693 42.857 0.00 0.00 0.00 4.85
4840 6592 1.546923 TGCAATTCACTCAATGCCAGG 59.453 47.619 0.00 0.00 0.00 4.45
4841 6593 1.134907 GCAATTCACTCAATGCCAGGG 60.135 52.381 0.00 0.00 0.00 4.45
4877 6629 8.600625 TCGATCGATCAATTAACCAGTTTTTAG 58.399 33.333 24.40 2.48 0.00 1.85
5079 6843 8.710835 TTCATCAATGAATGAATGTTGAATGG 57.289 30.769 1.30 0.00 42.54 3.16
5080 6844 8.068892 TCATCAATGAATGAATGTTGAATGGA 57.931 30.769 0.00 0.00 42.54 3.41
5081 6845 8.700973 TCATCAATGAATGAATGTTGAATGGAT 58.299 29.630 0.00 0.00 42.54 3.41
5085 6849 9.758651 CAATGAATGAATGTTGAATGGATATGT 57.241 29.630 0.00 0.00 0.00 2.29
5642 7406 1.628846 AGGTACATGTCTGGAACACCC 59.371 52.381 0.00 0.00 41.75 4.61
5689 7453 1.491505 GCTCGCGCTGGGATCTTTAC 61.492 60.000 5.56 0.00 0.00 2.01
5909 7673 3.885297 CACCAGGATCATCAAATGGTACC 59.115 47.826 4.43 4.43 42.29 3.34
5947 7714 3.821033 GCTACTCTGTTGTTTGTTCCCAT 59.179 43.478 0.00 0.00 0.00 4.00
5949 7716 2.878406 ACTCTGTTGTTTGTTCCCATCG 59.122 45.455 0.00 0.00 0.00 3.84
6022 7810 4.735132 TGCAGGTACAGCGCCGAC 62.735 66.667 2.29 0.00 46.64 4.79
6185 7973 4.336889 ACCGAATTCTGTTTCTGTCTCA 57.663 40.909 3.52 0.00 0.00 3.27
6263 8086 0.716108 GAAGAGATCAACCACGCGTG 59.284 55.000 31.77 31.77 0.00 5.34
6275 8098 0.928229 CACGCGTGGAGCTTATTACC 59.072 55.000 31.15 0.00 45.59 2.85
6287 8110 6.210784 TGGAGCTTATTACCAGCGATTATACT 59.789 38.462 0.00 0.00 42.55 2.12
6288 8111 7.395206 TGGAGCTTATTACCAGCGATTATACTA 59.605 37.037 0.00 0.00 42.55 1.82
6289 8112 7.701501 GGAGCTTATTACCAGCGATTATACTAC 59.298 40.741 0.00 0.00 42.55 2.73
6290 8113 8.350852 AGCTTATTACCAGCGATTATACTACT 57.649 34.615 0.00 0.00 42.55 2.57
6291 8114 8.460428 AGCTTATTACCAGCGATTATACTACTC 58.540 37.037 0.00 0.00 42.55 2.59
6292 8115 7.701501 GCTTATTACCAGCGATTATACTACTCC 59.298 40.741 0.00 0.00 0.00 3.85
6293 8116 5.972107 TTACCAGCGATTATACTACTCCC 57.028 43.478 0.00 0.00 0.00 4.30
6294 8117 4.115398 ACCAGCGATTATACTACTCCCT 57.885 45.455 0.00 0.00 0.00 4.20
6295 8118 4.080687 ACCAGCGATTATACTACTCCCTC 58.919 47.826 0.00 0.00 0.00 4.30
6296 8119 3.444388 CCAGCGATTATACTACTCCCTCC 59.556 52.174 0.00 0.00 0.00 4.30
6297 8120 3.127203 CAGCGATTATACTACTCCCTCCG 59.873 52.174 0.00 0.00 0.00 4.63
6298 8121 3.080319 GCGATTATACTACTCCCTCCGT 58.920 50.000 0.00 0.00 0.00 4.69
6299 8122 3.126686 GCGATTATACTACTCCCTCCGTC 59.873 52.174 0.00 0.00 0.00 4.79
6300 8123 3.688673 CGATTATACTACTCCCTCCGTCC 59.311 52.174 0.00 0.00 0.00 4.79
6301 8124 3.515602 TTATACTACTCCCTCCGTCCC 57.484 52.381 0.00 0.00 0.00 4.46
6302 8125 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
6303 8126 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
6304 8127 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6305 8128 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6306 8129 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6307 8130 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
6308 8131 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6309 8132 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6310 8133 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6311 8134 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6312 8135 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6313 8136 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6314 8137 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6315 8138 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
6316 8139 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
6317 8140 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
6318 8141 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
6319 8142 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
6320 8143 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
6321 8144 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
6322 8145 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
6323 8146 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
6324 8147 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
6325 8148 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
6326 8149 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
6329 8152 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
6330 8153 9.865321 AATATAAGAGCGTTTTTGACACTAGTA 57.135 29.630 0.00 0.00 0.00 1.82
6331 8154 7.813852 ATAAGAGCGTTTTTGACACTAGTAG 57.186 36.000 0.00 0.00 0.00 2.57
6332 8155 5.197682 AGAGCGTTTTTGACACTAGTAGT 57.802 39.130 0.00 0.00 0.00 2.73
6345 8168 5.251999 CACTAGTAGTGTCAAAAACGCTC 57.748 43.478 20.29 0.00 45.69 5.03
6346 8169 4.982916 CACTAGTAGTGTCAAAAACGCTCT 59.017 41.667 20.29 0.00 45.69 4.09
6347 8170 5.462398 CACTAGTAGTGTCAAAAACGCTCTT 59.538 40.000 20.29 0.00 45.69 2.85
6348 8171 6.639686 CACTAGTAGTGTCAAAAACGCTCTTA 59.360 38.462 20.29 0.00 45.69 2.10
6349 8172 7.328737 CACTAGTAGTGTCAAAAACGCTCTTAT 59.671 37.037 20.29 0.00 45.69 1.73
6350 8173 8.517878 ACTAGTAGTGTCAAAAACGCTCTTATA 58.482 33.333 0.85 0.00 45.69 0.98
6351 8174 9.517609 CTAGTAGTGTCAAAAACGCTCTTATAT 57.482 33.333 0.00 0.00 45.69 0.86
6352 8175 8.773404 AGTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
6353 8176 9.865321 AGTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
6356 8179 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
6357 8180 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
6358 8181 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
6359 8182 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
6380 8203 3.764972 ACAGAGGGAGTACTTAGCAAGAC 59.235 47.826 0.00 0.00 0.00 3.01
6386 8209 3.442977 GGAGTACTTAGCAAGACGGAAGA 59.557 47.826 0.00 0.00 0.00 2.87
6390 8213 1.996191 CTTAGCAAGACGGAAGACTGC 59.004 52.381 0.00 0.00 35.97 4.40
6444 8267 1.153756 CTTGGGTGGTTTCCTGCCT 59.846 57.895 0.00 0.00 0.00 4.75
6488 8311 2.757099 GGGGAGGGCAATGCACTG 60.757 66.667 17.53 0.00 45.08 3.66
6496 8319 1.670674 GGGCAATGCACTGTGTTGATG 60.671 52.381 7.79 7.65 0.00 3.07
6504 8327 1.070821 ACTGTGTTGATGACATCGCG 58.929 50.000 10.79 0.00 41.10 5.87
6558 8381 3.053245 TGTTAGAAGGGAGAGAGAGGGAG 60.053 52.174 0.00 0.00 0.00 4.30
6654 8491 6.435292 AGTACAAGACAAGGTAGGAACAAT 57.565 37.500 0.00 0.00 0.00 2.71
6671 8510 7.166691 GGAACAATATCCTACGCTATCCTAA 57.833 40.000 0.00 0.00 36.50 2.69
6672 8511 7.783042 GGAACAATATCCTACGCTATCCTAAT 58.217 38.462 0.00 0.00 36.50 1.73
6673 8512 8.910944 GGAACAATATCCTACGCTATCCTAATA 58.089 37.037 0.00 0.00 36.50 0.98
6914 8779 2.579787 CGAGGTAGCCGTGCGAAG 60.580 66.667 0.00 0.00 0.00 3.79
6915 8780 2.882876 GAGGTAGCCGTGCGAAGA 59.117 61.111 0.00 0.00 0.00 2.87
6916 8781 1.214589 GAGGTAGCCGTGCGAAGAA 59.785 57.895 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.525535 AAGGGAGCATGAGCATCGC 60.526 57.895 0.00 0.00 45.49 4.58
265 399 2.268076 CCTTTTGTGGGGCAGACGG 61.268 63.158 0.00 0.00 0.00 4.79
266 400 1.515521 GACCTTTTGTGGGGCAGACG 61.516 60.000 0.00 0.00 0.00 4.18
267 401 0.467290 TGACCTTTTGTGGGGCAGAC 60.467 55.000 0.00 0.00 36.87 3.51
268 402 0.260230 TTGACCTTTTGTGGGGCAGA 59.740 50.000 0.00 0.00 43.45 4.26
269 403 0.389025 GTTGACCTTTTGTGGGGCAG 59.611 55.000 0.00 0.00 43.45 4.85
303 437 1.051008 TCTCATATGGCATCACCGCT 58.949 50.000 1.65 0.00 43.94 5.52
310 444 3.439154 ACCGAGAGATCTCATATGGCAT 58.561 45.455 24.39 4.88 43.00 4.40
317 451 0.533085 TCGCGACCGAGAGATCTCAT 60.533 55.000 24.39 9.72 43.00 2.90
408 552 1.043116 ATCGGCGAGGTCAATCTGGA 61.043 55.000 17.22 0.00 0.00 3.86
499 659 1.228124 CGTGAACCAAGGGAAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
669 830 3.130516 GGATTTGGGATTTCCTTCCGTTC 59.869 47.826 0.00 0.00 36.58 3.95
670 831 3.096852 GGATTTGGGATTTCCTTCCGTT 58.903 45.455 0.00 0.00 36.58 4.44
671 832 2.623239 GGGATTTGGGATTTCCTTCCGT 60.623 50.000 0.00 0.00 36.58 4.69
672 833 2.031870 GGGATTTGGGATTTCCTTCCG 58.968 52.381 0.00 0.00 36.58 4.30
673 834 2.031870 CGGGATTTGGGATTTCCTTCC 58.968 52.381 0.00 0.00 36.20 3.46
1098 1269 2.187946 GGAGCACCCTCACGATGG 59.812 66.667 0.00 0.00 39.96 3.51
1103 1274 4.459089 GAGCCGGAGCACCCTCAC 62.459 72.222 5.05 0.00 43.56 3.51
1116 1287 4.168291 CTCTGCCCTTCCGGAGCC 62.168 72.222 3.34 0.00 31.98 4.70
1117 1288 4.168291 CCTCTGCCCTTCCGGAGC 62.168 72.222 3.34 5.61 36.99 4.70
1118 1289 4.168291 GCCTCTGCCCTTCCGGAG 62.168 72.222 3.34 0.00 37.85 4.63
1120 1291 4.785453 GTGCCTCTGCCCTTCCGG 62.785 72.222 0.00 0.00 36.33 5.14
1413 1587 1.448717 GGAGAAGAAGCTGACCCGC 60.449 63.158 0.00 0.00 0.00 6.13
1464 1638 2.347490 GACTGGCGGAAGAAGGCA 59.653 61.111 0.00 0.00 42.00 4.75
1569 1743 1.195115 CGTTGAGGAAGATCTGGGGA 58.805 55.000 0.00 0.00 0.00 4.81
1935 2109 5.728351 AAGTCAAACGAAACAGAATCGAA 57.272 34.783 2.65 0.00 42.76 3.71
1961 2135 5.175859 AGGATAAACAACAACGATCACGAT 58.824 37.500 0.00 0.00 42.66 3.73
1963 2137 4.921470 AGGATAAACAACAACGATCACG 57.079 40.909 0.00 0.00 45.75 4.35
1964 2138 4.851558 GCAAGGATAAACAACAACGATCAC 59.148 41.667 0.00 0.00 0.00 3.06
1966 2140 5.041951 TGCAAGGATAAACAACAACGATC 57.958 39.130 0.00 0.00 0.00 3.69
1968 2142 4.517075 TCATGCAAGGATAAACAACAACGA 59.483 37.500 0.00 0.00 0.00 3.85
1969 2143 4.793071 TCATGCAAGGATAAACAACAACG 58.207 39.130 0.00 0.00 0.00 4.10
1970 2144 6.091169 CCATTCATGCAAGGATAAACAACAAC 59.909 38.462 0.00 0.00 0.00 3.32
1971 2145 6.164876 CCATTCATGCAAGGATAAACAACAA 58.835 36.000 0.00 0.00 0.00 2.83
1983 2162 0.806868 ACGCTCACCATTCATGCAAG 59.193 50.000 0.00 0.00 0.00 4.01
2000 2179 3.605486 GCGTTTAGTCCAACACTACTACG 59.395 47.826 9.58 9.58 42.97 3.51
2003 2182 2.631545 AGGCGTTTAGTCCAACACTACT 59.368 45.455 0.00 0.00 37.32 2.57
2039 2218 5.105063 TCTGTGAGAAATGATACGCTCTTG 58.895 41.667 0.00 0.00 0.00 3.02
2101 2287 1.994467 GCTCGAGCTCAACACATCG 59.006 57.895 29.88 0.00 38.21 3.84
2127 2313 8.537858 AGGTAAAAGTGGACAAATACTACTAGG 58.462 37.037 0.00 0.00 0.00 3.02
2128 2314 9.367444 CAGGTAAAAGTGGACAAATACTACTAG 57.633 37.037 0.00 0.00 0.00 2.57
2154 2340 6.128391 TGCATAAACAACTCGAGGTATTGTTC 60.128 38.462 24.43 16.05 43.85 3.18
2188 2374 7.208080 ACTCAATATTCGCCGTCTAGTATTTT 58.792 34.615 0.00 0.00 0.00 1.82
2194 2380 7.459394 TTTAAACTCAATATTCGCCGTCTAG 57.541 36.000 0.00 0.00 0.00 2.43
2449 2643 8.375506 TCAAAGTTGTCTATACTGATTTGGACT 58.624 33.333 0.00 0.00 0.00 3.85
2494 2688 2.981805 CTCGTTTTCACCGATACGTTCA 59.018 45.455 0.00 0.00 35.63 3.18
2530 2724 1.543871 GCACCTCGTACCCCTCAAAAA 60.544 52.381 0.00 0.00 0.00 1.94
2531 2725 0.035739 GCACCTCGTACCCCTCAAAA 59.964 55.000 0.00 0.00 0.00 2.44
2532 2726 1.675219 GCACCTCGTACCCCTCAAA 59.325 57.895 0.00 0.00 0.00 2.69
2533 2727 2.288025 GGCACCTCGTACCCCTCAA 61.288 63.158 0.00 0.00 0.00 3.02
2534 2728 2.682494 GGCACCTCGTACCCCTCA 60.682 66.667 0.00 0.00 0.00 3.86
2547 2741 4.776647 GCGTTTGCATCCGGGCAC 62.777 66.667 4.74 0.00 44.86 5.01
2549 2743 4.481112 CAGCGTTTGCATCCGGGC 62.481 66.667 0.00 0.00 46.23 6.13
2550 2744 3.039202 GACAGCGTTTGCATCCGGG 62.039 63.158 0.00 0.00 46.23 5.73
2551 2745 0.739462 TAGACAGCGTTTGCATCCGG 60.739 55.000 0.00 0.00 46.23 5.14
2552 2746 0.647410 CTAGACAGCGTTTGCATCCG 59.353 55.000 0.00 0.00 46.23 4.18
2553 2747 1.009829 CCTAGACAGCGTTTGCATCC 58.990 55.000 0.00 0.00 46.23 3.51
2554 2748 2.010145 TCCTAGACAGCGTTTGCATC 57.990 50.000 0.00 0.00 46.23 3.91
2555 2749 2.698855 ATCCTAGACAGCGTTTGCAT 57.301 45.000 0.00 0.00 46.23 3.96
2556 2750 2.159099 CCTATCCTAGACAGCGTTTGCA 60.159 50.000 0.00 0.00 46.23 4.08
2722 2916 2.452813 CGATCGGGTGCCAACGAAG 61.453 63.158 7.38 0.00 42.88 3.79
2723 2917 2.433491 CGATCGGGTGCCAACGAA 60.433 61.111 7.38 0.00 42.88 3.85
2724 2918 3.350909 CTCGATCGGGTGCCAACGA 62.351 63.158 16.41 0.00 43.85 3.85
2725 2919 2.885644 CTCGATCGGGTGCCAACG 60.886 66.667 16.41 0.00 0.00 4.10
2726 2920 1.810030 GTCTCGATCGGGTGCCAAC 60.810 63.158 15.95 0.87 0.00 3.77
2727 2921 2.577059 GTCTCGATCGGGTGCCAA 59.423 61.111 15.95 0.00 0.00 4.52
2728 2922 3.458163 GGTCTCGATCGGGTGCCA 61.458 66.667 15.95 0.00 0.00 4.92
2760 2954 2.307049 GTCAAACAAGTGTGCATACGC 58.693 47.619 8.03 0.00 37.58 4.42
2767 2961 6.324819 GGATCAATATGGTCAAACAAGTGTG 58.675 40.000 0.00 0.00 0.00 3.82
2768 2962 5.123820 CGGATCAATATGGTCAAACAAGTGT 59.876 40.000 0.00 0.00 0.00 3.55
2784 2978 5.932303 CGGTTCAATTACTATCCGGATCAAT 59.068 40.000 23.08 15.69 35.25 2.57
2840 3034 4.921515 GTCGTGTGTATAGCAGTTCTGAAA 59.078 41.667 3.84 0.00 0.00 2.69
2844 3038 4.514781 TTGTCGTGTGTATAGCAGTTCT 57.485 40.909 0.00 0.00 0.00 3.01
2845 3039 5.779806 ATTTGTCGTGTGTATAGCAGTTC 57.220 39.130 0.00 0.00 0.00 3.01
2846 3040 6.554334 AAATTTGTCGTGTGTATAGCAGTT 57.446 33.333 0.00 0.00 0.00 3.16
2847 3041 5.163992 CGAAATTTGTCGTGTGTATAGCAGT 60.164 40.000 0.00 0.00 36.26 4.40
2848 3042 5.248087 CGAAATTTGTCGTGTGTATAGCAG 58.752 41.667 0.00 0.00 36.26 4.24
2849 3043 4.092237 CCGAAATTTGTCGTGTGTATAGCA 59.908 41.667 0.00 0.00 39.43 3.49
2850 3044 4.327898 TCCGAAATTTGTCGTGTGTATAGC 59.672 41.667 0.00 0.00 39.43 2.97
2851 3045 5.498069 CGTCCGAAATTTGTCGTGTGTATAG 60.498 44.000 0.00 0.00 39.43 1.31
2852 3046 4.324135 CGTCCGAAATTTGTCGTGTGTATA 59.676 41.667 0.00 0.00 39.43 1.47
2853 3047 3.122278 CGTCCGAAATTTGTCGTGTGTAT 59.878 43.478 0.00 0.00 39.43 2.29
2854 3048 2.472115 CGTCCGAAATTTGTCGTGTGTA 59.528 45.455 0.00 0.00 39.43 2.90
2855 3049 1.259507 CGTCCGAAATTTGTCGTGTGT 59.740 47.619 0.00 0.00 39.43 3.72
2856 3050 1.523515 TCGTCCGAAATTTGTCGTGTG 59.476 47.619 0.00 0.00 39.43 3.82
2857 3051 1.855513 TCGTCCGAAATTTGTCGTGT 58.144 45.000 0.00 0.00 39.43 4.49
2858 3052 2.757896 CATCGTCCGAAATTTGTCGTG 58.242 47.619 0.00 0.00 39.43 4.35
2859 3053 1.127951 GCATCGTCCGAAATTTGTCGT 59.872 47.619 0.00 0.00 39.43 4.34
2860 3054 1.797964 GCATCGTCCGAAATTTGTCG 58.202 50.000 0.00 0.00 40.77 4.35
2861 3055 1.797964 CGCATCGTCCGAAATTTGTC 58.202 50.000 0.00 0.00 0.00 3.18
2862 3056 0.179200 GCGCATCGTCCGAAATTTGT 60.179 50.000 0.30 0.00 0.00 2.83
2863 3057 0.179202 TGCGCATCGTCCGAAATTTG 60.179 50.000 5.66 0.00 0.00 2.32
2864 3058 0.096976 CTGCGCATCGTCCGAAATTT 59.903 50.000 12.24 0.00 0.00 1.82
2865 3059 0.739462 TCTGCGCATCGTCCGAAATT 60.739 50.000 12.24 0.00 0.00 1.82
2866 3060 1.153647 TCTGCGCATCGTCCGAAAT 60.154 52.632 12.24 0.00 0.00 2.17
2867 3061 2.092291 GTCTGCGCATCGTCCGAAA 61.092 57.895 12.24 0.00 0.00 3.46
2868 3062 2.506217 GTCTGCGCATCGTCCGAA 60.506 61.111 12.24 0.00 0.00 4.30
2869 3063 4.829518 CGTCTGCGCATCGTCCGA 62.830 66.667 12.24 0.00 0.00 4.55
2870 3064 2.711185 TATCGTCTGCGCATCGTCCG 62.711 60.000 25.81 17.28 38.14 4.79
2871 3065 0.999228 CTATCGTCTGCGCATCGTCC 60.999 60.000 25.81 8.03 38.14 4.79
2872 3066 0.999228 CCTATCGTCTGCGCATCGTC 60.999 60.000 25.81 8.89 38.14 4.20
2873 3067 1.008424 CCTATCGTCTGCGCATCGT 60.008 57.895 25.81 18.36 38.14 3.73
2874 3068 2.368105 GCCTATCGTCTGCGCATCG 61.368 63.158 22.82 22.82 38.14 3.84
2875 3069 0.875908 TTGCCTATCGTCTGCGCATC 60.876 55.000 12.24 6.60 38.14 3.91
2876 3070 0.461870 TTTGCCTATCGTCTGCGCAT 60.462 50.000 12.24 0.00 38.14 4.73
2877 3071 0.461870 ATTTGCCTATCGTCTGCGCA 60.462 50.000 10.98 10.98 38.14 6.09
2878 3072 0.233332 GATTTGCCTATCGTCTGCGC 59.767 55.000 0.00 0.00 38.14 6.09
2879 3073 1.524355 CAGATTTGCCTATCGTCTGCG 59.476 52.381 0.00 0.00 39.92 5.18
2880 3074 1.869767 CCAGATTTGCCTATCGTCTGC 59.130 52.381 0.00 0.00 36.00 4.26
2881 3075 1.869767 GCCAGATTTGCCTATCGTCTG 59.130 52.381 0.00 0.00 36.83 3.51
2882 3076 1.202698 GGCCAGATTTGCCTATCGTCT 60.203 52.381 0.00 0.00 45.70 4.18
2883 3077 1.230324 GGCCAGATTTGCCTATCGTC 58.770 55.000 0.00 0.00 45.70 4.20
2884 3078 3.403936 GGCCAGATTTGCCTATCGT 57.596 52.632 0.00 0.00 45.70 3.73
2890 3084 2.862674 TACGTCCGGCCAGATTTGCC 62.863 60.000 2.24 0.00 45.70 4.52
2891 3085 1.448893 TACGTCCGGCCAGATTTGC 60.449 57.895 2.24 0.00 0.00 3.68
2892 3086 1.418342 CGTACGTCCGGCCAGATTTG 61.418 60.000 7.22 0.00 0.00 2.32
2893 3087 1.153706 CGTACGTCCGGCCAGATTT 60.154 57.895 7.22 0.00 0.00 2.17
2894 3088 2.345760 ACGTACGTCCGGCCAGATT 61.346 57.895 16.72 0.00 0.00 2.40
2895 3089 2.753043 ACGTACGTCCGGCCAGAT 60.753 61.111 16.72 0.00 0.00 2.90
2896 3090 3.740397 CACGTACGTCCGGCCAGA 61.740 66.667 19.94 0.00 0.00 3.86
2947 3148 1.219393 GCACCGAGAGAAGGAAGGG 59.781 63.158 0.00 0.00 0.00 3.95
2948 3149 0.321671 TTGCACCGAGAGAAGGAAGG 59.678 55.000 0.00 0.00 0.00 3.46
2950 3151 1.902508 AGATTGCACCGAGAGAAGGAA 59.097 47.619 0.00 0.00 0.00 3.36
2951 3152 1.561643 AGATTGCACCGAGAGAAGGA 58.438 50.000 0.00 0.00 0.00 3.36
3024 3231 1.741145 CTAATTTTCCCAACCCGACCG 59.259 52.381 0.00 0.00 0.00 4.79
3036 3243 8.283291 CCCACTAATCTAATCACGCTAATTTTC 58.717 37.037 0.00 0.00 0.00 2.29
3093 3303 0.824759 AACGGAGTAGCAGTGGATCC 59.175 55.000 4.20 4.20 45.00 3.36
3195 3412 2.661537 CAGCGACGGCAACACTGA 60.662 61.111 0.00 0.00 43.41 3.41
3241 3466 3.684103 ATTCGCAACAGAAAACACGAA 57.316 38.095 0.00 0.00 42.80 3.85
3431 3661 3.897122 AGCAAAAGCGGGACCCCA 61.897 61.111 4.46 0.00 35.37 4.96
3584 3815 3.781307 CCGGAGCAATCCCACCGA 61.781 66.667 0.00 0.00 46.94 4.69
4599 6347 5.734031 ATATTTACCAAAAGCTCCCTCCT 57.266 39.130 0.00 0.00 0.00 3.69
4705 6454 6.562086 GCAAAATACACTAGTTGCTTGTTTGC 60.562 38.462 16.38 16.38 42.41 3.68
4832 6584 2.357836 CTCCACAGCCCTGGCATT 59.642 61.111 11.38 0.00 44.88 3.56
4835 6587 4.416738 GACCTCCACAGCCCTGGC 62.417 72.222 0.00 0.00 42.33 4.85
4836 6588 4.087892 CGACCTCCACAGCCCTGG 62.088 72.222 0.00 0.00 34.19 4.45
4837 6589 2.303549 GATCGACCTCCACAGCCCTG 62.304 65.000 0.00 0.00 0.00 4.45
4838 6590 2.039624 ATCGACCTCCACAGCCCT 59.960 61.111 0.00 0.00 0.00 5.19
4839 6591 2.501610 GATCGACCTCCACAGCCC 59.498 66.667 0.00 0.00 0.00 5.19
4840 6592 1.739338 ATCGATCGACCTCCACAGCC 61.739 60.000 22.06 0.00 0.00 4.85
4841 6593 0.318275 GATCGATCGACCTCCACAGC 60.318 60.000 22.06 0.00 0.00 4.40
4877 6629 3.438297 TTGATCGATCGAGGAGGAAAC 57.562 47.619 23.84 7.48 0.00 2.78
5035 6788 7.499292 TGATGAACAAAACATCACTGGAATTT 58.501 30.769 0.00 0.00 45.71 1.82
5036 6789 7.053316 TGATGAACAAAACATCACTGGAATT 57.947 32.000 0.00 0.00 45.71 2.17
5068 6832 5.163488 CCTGCACACATATCCATTCAACATT 60.163 40.000 0.00 0.00 0.00 2.71
5071 6835 3.067180 CCCTGCACACATATCCATTCAAC 59.933 47.826 0.00 0.00 0.00 3.18
5072 6836 3.053768 TCCCTGCACACATATCCATTCAA 60.054 43.478 0.00 0.00 0.00 2.69
5073 6837 2.509131 TCCCTGCACACATATCCATTCA 59.491 45.455 0.00 0.00 0.00 2.57
5074 6838 3.144506 CTCCCTGCACACATATCCATTC 58.855 50.000 0.00 0.00 0.00 2.67
5075 6839 2.779430 TCTCCCTGCACACATATCCATT 59.221 45.455 0.00 0.00 0.00 3.16
5076 6840 2.411583 TCTCCCTGCACACATATCCAT 58.588 47.619 0.00 0.00 0.00 3.41
5077 6841 1.878211 TCTCCCTGCACACATATCCA 58.122 50.000 0.00 0.00 0.00 3.41
5078 6842 2.565841 GTTCTCCCTGCACACATATCC 58.434 52.381 0.00 0.00 0.00 2.59
5079 6843 2.159099 TCGTTCTCCCTGCACACATATC 60.159 50.000 0.00 0.00 0.00 1.63
5080 6844 1.831106 TCGTTCTCCCTGCACACATAT 59.169 47.619 0.00 0.00 0.00 1.78
5081 6845 1.067142 GTCGTTCTCCCTGCACACATA 60.067 52.381 0.00 0.00 0.00 2.29
5085 6849 0.033504 GAAGTCGTTCTCCCTGCACA 59.966 55.000 0.00 0.00 0.00 4.57
5642 7406 0.394192 TGCAGCGATCCCATTCCTAG 59.606 55.000 0.00 0.00 0.00 3.02
6022 7810 3.003173 TCCCTGTCCTGCCCGAAG 61.003 66.667 0.00 0.00 0.00 3.79
6263 8086 6.631962 AGTATAATCGCTGGTAATAAGCTCC 58.368 40.000 0.00 0.00 38.57 4.70
6287 8110 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
6288 8111 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
6289 8112 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6290 8113 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
6291 8114 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
6292 8115 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
6293 8116 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
6294 8117 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
6295 8118 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
6296 8119 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
6297 8120 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
6298 8121 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
6299 8122 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
6300 8123 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
6303 8126 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
6304 8127 8.773404 ACTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
6305 8128 9.517609 CTACTAGTGTCAAAAACGCTCTTATAT 57.482 33.333 5.39 0.00 45.69 0.86
6306 8129 8.517878 ACTACTAGTGTCAAAAACGCTCTTATA 58.482 33.333 5.39 0.00 45.69 0.98
6307 8130 7.328737 CACTACTAGTGTCAAAAACGCTCTTAT 59.671 37.037 5.39 0.00 45.69 1.73
6308 8131 6.639686 CACTACTAGTGTCAAAAACGCTCTTA 59.360 38.462 5.39 0.00 45.69 2.10
6309 8132 5.462398 CACTACTAGTGTCAAAAACGCTCTT 59.538 40.000 5.39 0.00 45.69 2.85
6310 8133 4.982916 CACTACTAGTGTCAAAAACGCTCT 59.017 41.667 5.39 0.00 45.69 4.09
6311 8134 5.251999 CACTACTAGTGTCAAAAACGCTC 57.748 43.478 5.39 0.00 45.69 5.03
6324 8147 5.197682 AGAGCGTTTTTGACACTACTAGT 57.802 39.130 0.00 0.00 0.00 2.57
6325 8148 7.813852 ATAAGAGCGTTTTTGACACTACTAG 57.186 36.000 0.00 0.00 0.00 2.57
6326 8149 9.865321 AATATAAGAGCGTTTTTGACACTACTA 57.135 29.630 0.00 0.00 0.00 1.82
6327 8150 8.773404 AATATAAGAGCGTTTTTGACACTACT 57.227 30.769 0.00 0.00 0.00 2.57
6330 8153 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
6331 8154 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
6332 8155 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
6333 8156 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
6334 8157 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
6335 8158 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
6336 8159 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
6337 8160 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
6338 8161 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
6339 8162 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
6340 8163 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
6341 8164 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
6342 8165 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
6343 8166 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
6344 8167 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
6345 8168 7.896496 AGTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
6346 8169 7.776745 AGTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
6347 8170 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
6348 8171 6.234404 AGTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
6349 8172 5.681494 AGTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
6350 8173 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
6351 8174 4.348020 AAGTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
6352 8175 4.691935 GCTAAGTACTCCCTCTGTCCCATA 60.692 50.000 0.00 0.00 0.00 2.74
6353 8176 2.950990 AAGTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
6354 8177 2.623502 GCTAAGTACTCCCTCTGTCCCA 60.624 54.545 0.00 0.00 0.00 4.37
6355 8178 2.033372 GCTAAGTACTCCCTCTGTCCC 58.967 57.143 0.00 0.00 0.00 4.46
6356 8179 2.736347 TGCTAAGTACTCCCTCTGTCC 58.264 52.381 0.00 0.00 0.00 4.02
6357 8180 4.017808 TCTTGCTAAGTACTCCCTCTGTC 58.982 47.826 0.00 0.00 0.00 3.51
6358 8181 3.764972 GTCTTGCTAAGTACTCCCTCTGT 59.235 47.826 0.00 0.00 0.00 3.41
6359 8182 3.181495 CGTCTTGCTAAGTACTCCCTCTG 60.181 52.174 0.00 0.00 0.00 3.35
6360 8183 3.018149 CGTCTTGCTAAGTACTCCCTCT 58.982 50.000 0.00 0.00 0.00 3.69
6361 8184 2.099427 CCGTCTTGCTAAGTACTCCCTC 59.901 54.545 0.00 0.00 0.00 4.30
6362 8185 2.100989 CCGTCTTGCTAAGTACTCCCT 58.899 52.381 0.00 0.00 0.00 4.20
6363 8186 2.097825 TCCGTCTTGCTAAGTACTCCC 58.902 52.381 0.00 0.00 0.00 4.30
6364 8187 3.442977 TCTTCCGTCTTGCTAAGTACTCC 59.557 47.826 0.00 0.00 0.00 3.85
6380 8203 0.317160 TGTACACCTGCAGTCTTCCG 59.683 55.000 13.81 0.00 0.00 4.30
6386 8209 8.890718 CGTACTATATATATGTACACCTGCAGT 58.109 37.037 13.81 11.46 37.11 4.40
6420 8243 0.178961 GGAAACCACCCAAGAGGCTT 60.179 55.000 0.00 0.00 40.58 4.35
6488 8311 2.594529 AAACGCGATGTCATCAACAC 57.405 45.000 15.93 0.00 41.75 3.32
6496 8319 1.859135 GCTGCGAAAACGCGATGTC 60.859 57.895 15.93 4.27 37.77 3.06
6504 8327 0.166814 AGCATCTTCGCTGCGAAAAC 59.833 50.000 33.30 22.87 45.23 2.43
6522 8345 8.749026 TCCCTTCTAACACTTAGTGTATCTAG 57.251 38.462 18.93 15.75 46.79 2.43
6531 8354 5.592688 CCTCTCTCTCCCTTCTAACACTTAG 59.407 48.000 0.00 0.00 34.52 2.18
6558 8381 9.019764 CAATACATAAAAACGATTCCACCAATC 57.980 33.333 0.00 0.00 38.06 2.67
6671 8510 8.198109 GCGGGAGATGTTGAGTATAATGTATAT 58.802 37.037 0.00 0.00 0.00 0.86
6672 8511 7.177744 TGCGGGAGATGTTGAGTATAATGTATA 59.822 37.037 0.00 0.00 0.00 1.47
6673 8512 6.014584 TGCGGGAGATGTTGAGTATAATGTAT 60.015 38.462 0.00 0.00 0.00 2.29
6675 8514 4.100963 TGCGGGAGATGTTGAGTATAATGT 59.899 41.667 0.00 0.00 0.00 2.71
6685 8526 0.320683 TGTGACTGCGGGAGATGTTG 60.321 55.000 2.65 0.00 0.00 3.33
6914 8779 0.096976 CAACATCGACCACGGCATTC 59.903 55.000 0.00 0.00 40.21 2.67
6915 8780 0.321210 TCAACATCGACCACGGCATT 60.321 50.000 0.00 0.00 40.21 3.56
6916 8781 0.740868 CTCAACATCGACCACGGCAT 60.741 55.000 0.00 0.00 40.21 4.40
7033 8901 3.653113 CGTCGTCAACAACATTTTCTTCG 59.347 43.478 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.