Multiple sequence alignment - TraesCS1D01G156400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G156400 chr1D 100.000 2432 0 0 1 2432 220428352 220425921 0.000000e+00 4492.0
1 TraesCS1D01G156400 chr1A 88.990 1653 97 44 659 2266 284337615 284336003 0.000000e+00 1965.0
2 TraesCS1D01G156400 chr1A 88.215 594 45 11 1 589 284338302 284337729 0.000000e+00 686.0
3 TraesCS1D01G156400 chr1B 92.376 1246 55 30 690 1902 315383056 315384294 0.000000e+00 1738.0
4 TraesCS1D01G156400 chr1B 96.970 33 0 1 7 39 315382063 315382094 1.000000e-03 54.7
5 TraesCS1D01G156400 chr2A 90.909 55 4 1 322 376 183540319 183540372 3.350000e-09 73.1
6 TraesCS1D01G156400 chr2D 90.741 54 4 1 322 375 166615761 166615709 1.210000e-08 71.3
7 TraesCS1D01G156400 chr2D 95.122 41 2 0 517 557 6497672 6497632 5.610000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G156400 chr1D 220425921 220428352 2431 True 4492.00 4492 100.0000 1 2432 1 chr1D.!!$R1 2431
1 TraesCS1D01G156400 chr1A 284336003 284338302 2299 True 1325.50 1965 88.6025 1 2266 2 chr1A.!!$R1 2265
2 TraesCS1D01G156400 chr1B 315382063 315384294 2231 False 896.35 1738 94.6730 7 1902 2 chr1B.!!$F1 1895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 1068 0.323629 CTCGTTTACAGCCAAGGGGA 59.676 55.0 0.0 0.0 35.59 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2561 0.109226 AGCAGAAGACCTACGAACGC 60.109 55.0 0.0 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 2.770164 AGAACAGTTCGGGGATTCAG 57.230 50.000 7.68 0.00 34.02 3.02
115 116 5.823045 ACAGTTCGGGGATTCAGAAATAATC 59.177 40.000 0.00 0.00 31.72 1.75
117 118 4.682778 TCGGGGATTCAGAAATAATCGT 57.317 40.909 0.00 0.00 34.74 3.73
123 124 6.265422 GGGGATTCAGAAATAATCGTGGATTT 59.735 38.462 0.00 0.00 34.74 2.17
333 698 0.494551 TGGGGTCCTAGAAGGTTCCA 59.505 55.000 0.00 6.49 36.53 3.53
338 703 3.825014 GGGTCCTAGAAGGTTCCAAAAAC 59.175 47.826 0.00 0.00 36.53 2.43
339 704 3.825014 GGTCCTAGAAGGTTCCAAAAACC 59.175 47.826 0.00 0.00 40.58 3.27
343 708 2.028876 AGAAGGTTCCAAAAACCGGTG 58.971 47.619 8.52 0.00 44.82 4.94
357 722 1.220206 CGGTGCAAGGAGAGATGCT 59.780 57.895 0.00 0.00 42.97 3.79
359 724 1.804372 CGGTGCAAGGAGAGATGCTAC 60.804 57.143 0.00 0.00 42.97 3.58
367 732 1.552792 GGAGAGATGCTACTATGGGCC 59.447 57.143 0.00 0.00 0.00 5.80
493 862 9.178758 GGGAAATAAGAAGTGTTGATAAGACAT 57.821 33.333 0.00 0.00 0.00 3.06
559 928 1.537202 ACACTGGCTCGCTCAATTTTC 59.463 47.619 0.00 0.00 0.00 2.29
562 931 1.808945 CTGGCTCGCTCAATTTTCACT 59.191 47.619 0.00 0.00 0.00 3.41
564 933 2.079925 GGCTCGCTCAATTTTCACTCT 58.920 47.619 0.00 0.00 0.00 3.24
565 934 3.262420 GGCTCGCTCAATTTTCACTCTA 58.738 45.455 0.00 0.00 0.00 2.43
566 935 3.873952 GGCTCGCTCAATTTTCACTCTAT 59.126 43.478 0.00 0.00 0.00 1.98
621 1056 6.310467 CACTATAAGTTTGCTGAGCTCGTTTA 59.690 38.462 9.64 0.48 0.00 2.01
627 1062 0.670546 GCTGAGCTCGTTTACAGCCA 60.671 55.000 9.64 1.83 46.46 4.75
628 1063 1.795768 CTGAGCTCGTTTACAGCCAA 58.204 50.000 9.64 0.00 37.63 4.52
629 1064 1.728971 CTGAGCTCGTTTACAGCCAAG 59.271 52.381 9.64 0.00 37.63 3.61
633 1068 0.323629 CTCGTTTACAGCCAAGGGGA 59.676 55.000 0.00 0.00 35.59 4.81
634 1069 0.988832 TCGTTTACAGCCAAGGGGAT 59.011 50.000 0.00 0.00 35.59 3.85
635 1070 1.353022 TCGTTTACAGCCAAGGGGATT 59.647 47.619 0.00 0.00 35.59 3.01
636 1071 2.167662 CGTTTACAGCCAAGGGGATTT 58.832 47.619 0.00 0.00 35.59 2.17
637 1072 2.560981 CGTTTACAGCCAAGGGGATTTT 59.439 45.455 0.00 0.00 35.59 1.82
638 1073 3.006430 CGTTTACAGCCAAGGGGATTTTT 59.994 43.478 0.00 0.00 35.59 1.94
715 1155 4.759782 ACGATTCCAGTCCAGTTCTATTG 58.240 43.478 0.00 0.00 0.00 1.90
899 1339 1.305887 GAAGTTCCTCCCCTCCCGA 60.306 63.158 0.00 0.00 0.00 5.14
916 1356 3.633609 GACGCCCCCAAACCCTACC 62.634 68.421 0.00 0.00 0.00 3.18
1448 1892 0.681887 TAGGTTCCTCCGCATCGTCA 60.682 55.000 0.00 0.00 41.99 4.35
1517 1967 6.039616 GTGGCAAGTAATGTTTTGAACTCAA 58.960 36.000 0.00 0.00 0.00 3.02
1518 1968 6.198966 GTGGCAAGTAATGTTTTGAACTCAAG 59.801 38.462 0.00 0.00 37.15 3.02
1631 2081 6.602179 TGATCTTTGAAGTTTATGCTCGTTG 58.398 36.000 0.00 0.00 0.00 4.10
1718 2170 2.420722 TGTTCGTCCAACACTTTCCAAC 59.579 45.455 0.00 0.00 40.29 3.77
1742 2194 1.748403 GGTCTATGCAGGCCGATGA 59.252 57.895 0.00 0.00 36.64 2.92
1744 2196 1.436600 GTCTATGCAGGCCGATGATG 58.563 55.000 0.00 0.00 0.00 3.07
1750 2202 1.153309 CAGGCCGATGATGCTGTCA 60.153 57.895 0.00 0.00 42.06 3.58
1784 2268 4.595762 AACGTTCAGTAGTGGTACATGT 57.404 40.909 2.69 2.69 44.52 3.21
1832 2317 5.567534 GTGCGTTGTACAATTGTTCCTATTG 59.432 40.000 17.78 2.80 38.61 1.90
1836 2321 6.567701 CGTTGTACAATTGTTCCTATTGCTGT 60.568 38.462 17.78 0.00 36.65 4.40
1860 2345 7.334921 TGTTTAGTGCTGCTATATAAAACCGTT 59.665 33.333 0.00 0.00 0.00 4.44
1876 2364 7.406799 AAAACCGTTGATTATTGCTTTTCTG 57.593 32.000 0.00 0.00 0.00 3.02
1946 2435 9.280174 TGTCTTTCAATTTAGGTAGGTTTACAG 57.720 33.333 0.00 0.00 0.00 2.74
1954 2443 8.803397 ATTTAGGTAGGTTTACAGGATTGAAC 57.197 34.615 0.00 0.00 0.00 3.18
1958 2447 6.958192 AGGTAGGTTTACAGGATTGAACTAGA 59.042 38.462 0.00 0.00 0.00 2.43
1983 2472 5.659440 TGAGTTTCTTTGAACTGGCTTTT 57.341 34.783 0.00 0.00 39.84 2.27
1990 2479 5.988287 TCTTTGAACTGGCTTTTGGAAATT 58.012 33.333 0.00 0.00 0.00 1.82
1996 2493 3.181455 ACTGGCTTTTGGAAATTGGAACC 60.181 43.478 0.00 0.00 0.00 3.62
1998 2495 3.181456 TGGCTTTTGGAAATTGGAACCAG 60.181 43.478 0.00 0.00 35.08 4.00
2021 2518 3.447586 TCCTGCACTGTGAGTATAGTTCC 59.552 47.826 12.86 0.00 0.00 3.62
2030 2527 0.753262 AGTATAGTTCCGCCCTGCAG 59.247 55.000 6.78 6.78 0.00 4.41
2035 2533 1.675641 GTTCCGCCCTGCAGTCAAT 60.676 57.895 13.81 0.00 0.00 2.57
2036 2534 1.074775 TTCCGCCCTGCAGTCAATT 59.925 52.632 13.81 0.00 0.00 2.32
2041 2539 1.406069 CGCCCTGCAGTCAATTAGAGT 60.406 52.381 13.81 0.00 0.00 3.24
2063 2561 3.854669 CTCGTAGGCCAGGCTGGG 61.855 72.222 33.43 17.28 38.19 4.45
2071 2569 4.077184 CCAGGCTGGGCGTTCGTA 62.077 66.667 26.34 0.00 32.67 3.43
2072 2570 2.509336 CAGGCTGGGCGTTCGTAG 60.509 66.667 6.61 0.00 0.00 3.51
2073 2571 3.771160 AGGCTGGGCGTTCGTAGG 61.771 66.667 0.00 0.00 0.00 3.18
2074 2572 4.078516 GGCTGGGCGTTCGTAGGT 62.079 66.667 0.00 0.00 0.00 3.08
2098 2614 5.359576 TCTTCTGCTGTTTATTTGGTTGTGT 59.640 36.000 0.00 0.00 0.00 3.72
2106 2622 6.867550 TGTTTATTTGGTTGTGTTCATGTGA 58.132 32.000 0.00 0.00 0.00 3.58
2108 2624 7.819415 TGTTTATTTGGTTGTGTTCATGTGAAA 59.181 29.630 0.00 0.00 35.58 2.69
2111 2627 6.900568 TTTGGTTGTGTTCATGTGAAAATC 57.099 33.333 0.00 0.00 35.58 2.17
2112 2628 5.850557 TGGTTGTGTTCATGTGAAAATCT 57.149 34.783 0.00 0.00 35.58 2.40
2113 2629 6.219417 TGGTTGTGTTCATGTGAAAATCTT 57.781 33.333 0.00 0.00 35.58 2.40
2114 2630 6.041511 TGGTTGTGTTCATGTGAAAATCTTG 58.958 36.000 0.00 0.00 35.58 3.02
2126 2642 8.871862 CATGTGAAAATCTTGTTTTCTTGTTCA 58.128 29.630 12.71 0.00 38.75 3.18
2144 2660 4.215399 TGTTCAACTCCTTAGCAAAATCCG 59.785 41.667 0.00 0.00 0.00 4.18
2149 2665 4.523083 ACTCCTTAGCAAAATCCGCATTA 58.477 39.130 0.00 0.00 0.00 1.90
2151 2667 5.594317 ACTCCTTAGCAAAATCCGCATTAAT 59.406 36.000 0.00 0.00 0.00 1.40
2152 2668 5.830912 TCCTTAGCAAAATCCGCATTAATG 58.169 37.500 11.27 11.27 0.00 1.90
2153 2669 5.592282 TCCTTAGCAAAATCCGCATTAATGA 59.408 36.000 19.73 0.00 0.00 2.57
2154 2670 5.687285 CCTTAGCAAAATCCGCATTAATGAC 59.313 40.000 19.73 9.37 0.00 3.06
2155 2671 4.717233 AGCAAAATCCGCATTAATGACA 57.283 36.364 19.73 1.91 0.00 3.58
2156 2672 4.675510 AGCAAAATCCGCATTAATGACAG 58.324 39.130 19.73 8.99 0.00 3.51
2157 2673 4.158394 AGCAAAATCCGCATTAATGACAGT 59.842 37.500 19.73 0.00 0.00 3.55
2178 2694 3.247411 GTGGGTTTGCTTTGTTACATTGC 59.753 43.478 3.76 3.76 0.00 3.56
2179 2695 3.118629 TGGGTTTGCTTTGTTACATTGCA 60.119 39.130 8.29 8.29 0.00 4.08
2196 2712 1.032014 GCACTCTTGCTTGTTTCCCA 58.968 50.000 0.00 0.00 46.17 4.37
2198 2714 2.352127 GCACTCTTGCTTGTTTCCCATC 60.352 50.000 0.00 0.00 46.17 3.51
2199 2715 2.229784 CACTCTTGCTTGTTTCCCATCC 59.770 50.000 0.00 0.00 0.00 3.51
2213 2733 3.055328 TCCCATCCCTGAAATATCTGCA 58.945 45.455 0.00 0.00 0.00 4.41
2223 2743 5.494632 TGAAATATCTGCAGTGCATTGAG 57.505 39.130 20.10 7.04 38.13 3.02
2233 2753 2.416547 CAGTGCATTGAGTAGAAACCGG 59.583 50.000 2.46 0.00 0.00 5.28
2242 2762 3.000727 GAGTAGAAACCGGTGATGTTGG 58.999 50.000 8.52 0.00 0.00 3.77
2247 2767 2.178912 AACCGGTGATGTTGGTACTG 57.821 50.000 8.52 0.00 34.11 2.74
2252 2772 3.399330 CGGTGATGTTGGTACTGAACTT 58.601 45.455 8.97 4.04 0.00 2.66
2266 2786 5.310720 ACTGAACTTTTGTGGTGTTTCTC 57.689 39.130 0.00 0.00 0.00 2.87
2267 2787 4.157840 ACTGAACTTTTGTGGTGTTTCTCC 59.842 41.667 0.00 0.00 0.00 3.71
2268 2788 4.340617 TGAACTTTTGTGGTGTTTCTCCT 58.659 39.130 0.00 0.00 0.00 3.69
2269 2789 4.398044 TGAACTTTTGTGGTGTTTCTCCTC 59.602 41.667 0.00 0.00 0.00 3.71
2270 2790 3.288092 ACTTTTGTGGTGTTTCTCCTCC 58.712 45.455 0.00 0.00 0.00 4.30
2271 2791 2.358322 TTTGTGGTGTTTCTCCTCCC 57.642 50.000 0.00 0.00 0.00 4.30
2272 2792 1.518367 TTGTGGTGTTTCTCCTCCCT 58.482 50.000 0.00 0.00 0.00 4.20
2273 2793 0.764890 TGTGGTGTTTCTCCTCCCTG 59.235 55.000 0.00 0.00 0.00 4.45
2274 2794 1.056660 GTGGTGTTTCTCCTCCCTGA 58.943 55.000 0.00 0.00 0.00 3.86
2275 2795 1.630878 GTGGTGTTTCTCCTCCCTGAT 59.369 52.381 0.00 0.00 0.00 2.90
2276 2796 2.040412 GTGGTGTTTCTCCTCCCTGATT 59.960 50.000 0.00 0.00 0.00 2.57
2277 2797 2.305927 TGGTGTTTCTCCTCCCTGATTC 59.694 50.000 0.00 0.00 0.00 2.52
2278 2798 2.305927 GGTGTTTCTCCTCCCTGATTCA 59.694 50.000 0.00 0.00 0.00 2.57
2279 2799 3.244911 GGTGTTTCTCCTCCCTGATTCAA 60.245 47.826 0.00 0.00 0.00 2.69
2280 2800 4.006319 GTGTTTCTCCTCCCTGATTCAAG 58.994 47.826 0.00 0.00 0.00 3.02
2281 2801 3.009473 TGTTTCTCCTCCCTGATTCAAGG 59.991 47.826 0.00 0.00 37.05 3.61
2288 2808 3.909587 CCTGATTCAAGGGGATGCA 57.090 52.632 0.00 0.00 33.28 3.96
2289 2809 2.148446 CCTGATTCAAGGGGATGCAA 57.852 50.000 0.00 0.00 33.28 4.08
2290 2810 2.459644 CCTGATTCAAGGGGATGCAAA 58.540 47.619 0.00 0.00 33.28 3.68
2291 2811 2.833338 CCTGATTCAAGGGGATGCAAAA 59.167 45.455 0.00 0.00 33.28 2.44
2292 2812 3.261390 CCTGATTCAAGGGGATGCAAAAA 59.739 43.478 0.00 0.00 33.28 1.94
2293 2813 4.501071 CTGATTCAAGGGGATGCAAAAAG 58.499 43.478 0.00 0.00 0.00 2.27
2294 2814 4.158786 TGATTCAAGGGGATGCAAAAAGA 58.841 39.130 0.00 0.00 0.00 2.52
2295 2815 4.778958 TGATTCAAGGGGATGCAAAAAGAT 59.221 37.500 0.00 0.00 0.00 2.40
2296 2816 5.957168 TGATTCAAGGGGATGCAAAAAGATA 59.043 36.000 0.00 0.00 0.00 1.98
2297 2817 5.920193 TTCAAGGGGATGCAAAAAGATAG 57.080 39.130 0.00 0.00 0.00 2.08
2298 2818 4.934356 TCAAGGGGATGCAAAAAGATAGT 58.066 39.130 0.00 0.00 0.00 2.12
2299 2819 5.332743 TCAAGGGGATGCAAAAAGATAGTT 58.667 37.500 0.00 0.00 0.00 2.24
2300 2820 5.185635 TCAAGGGGATGCAAAAAGATAGTTG 59.814 40.000 0.00 0.00 0.00 3.16
2301 2821 4.934356 AGGGGATGCAAAAAGATAGTTGA 58.066 39.130 0.00 0.00 0.00 3.18
2302 2822 5.332743 AGGGGATGCAAAAAGATAGTTGAA 58.667 37.500 0.00 0.00 0.00 2.69
2303 2823 5.960202 AGGGGATGCAAAAAGATAGTTGAAT 59.040 36.000 0.00 0.00 0.00 2.57
2304 2824 7.125391 AGGGGATGCAAAAAGATAGTTGAATA 58.875 34.615 0.00 0.00 0.00 1.75
2305 2825 7.786464 AGGGGATGCAAAAAGATAGTTGAATAT 59.214 33.333 0.00 0.00 0.00 1.28
2306 2826 8.084684 GGGGATGCAAAAAGATAGTTGAATATC 58.915 37.037 0.00 0.00 33.16 1.63
2307 2827 8.854117 GGGATGCAAAAAGATAGTTGAATATCT 58.146 33.333 0.00 0.00 42.95 1.98
2308 2828 9.674824 GGATGCAAAAAGATAGTTGAATATCTG 57.325 33.333 2.14 0.00 40.79 2.90
2330 2850 8.687292 TCTGAATAGTTACGGTATGATACACT 57.313 34.615 4.83 2.13 0.00 3.55
2331 2851 9.128404 TCTGAATAGTTACGGTATGATACACTT 57.872 33.333 4.83 0.00 0.00 3.16
2332 2852 9.745880 CTGAATAGTTACGGTATGATACACTTT 57.254 33.333 4.83 0.00 0.00 2.66
2333 2853 9.524106 TGAATAGTTACGGTATGATACACTTTG 57.476 33.333 4.83 0.00 0.00 2.77
2334 2854 9.525409 GAATAGTTACGGTATGATACACTTTGT 57.475 33.333 4.83 0.00 0.00 2.83
2335 2855 9.880157 AATAGTTACGGTATGATACACTTTGTT 57.120 29.630 4.83 0.00 0.00 2.83
2336 2856 7.591006 AGTTACGGTATGATACACTTTGTTG 57.409 36.000 4.83 0.00 0.00 3.33
2337 2857 6.592607 AGTTACGGTATGATACACTTTGTTGG 59.407 38.462 4.83 0.00 0.00 3.77
2338 2858 4.901868 ACGGTATGATACACTTTGTTGGT 58.098 39.130 4.83 0.00 0.00 3.67
2339 2859 5.310451 ACGGTATGATACACTTTGTTGGTT 58.690 37.500 4.83 0.00 0.00 3.67
2340 2860 5.180492 ACGGTATGATACACTTTGTTGGTTG 59.820 40.000 4.83 0.00 0.00 3.77
2341 2861 5.180492 CGGTATGATACACTTTGTTGGTTGT 59.820 40.000 4.83 0.00 0.00 3.32
2342 2862 6.608610 GGTATGATACACTTTGTTGGTTGTC 58.391 40.000 4.83 0.00 0.00 3.18
2343 2863 6.430000 GGTATGATACACTTTGTTGGTTGTCT 59.570 38.462 4.83 0.00 0.00 3.41
2344 2864 5.749596 TGATACACTTTGTTGGTTGTCTG 57.250 39.130 0.00 0.00 0.00 3.51
2345 2865 2.939460 ACACTTTGTTGGTTGTCTGC 57.061 45.000 0.00 0.00 0.00 4.26
2346 2866 2.166829 ACACTTTGTTGGTTGTCTGCA 58.833 42.857 0.00 0.00 0.00 4.41
2347 2867 2.094752 ACACTTTGTTGGTTGTCTGCAC 60.095 45.455 0.00 0.00 0.00 4.57
2348 2868 1.132262 ACTTTGTTGGTTGTCTGCACG 59.868 47.619 0.00 0.00 0.00 5.34
2349 2869 0.453793 TTTGTTGGTTGTCTGCACGG 59.546 50.000 0.00 0.00 0.00 4.94
2350 2870 0.678366 TTGTTGGTTGTCTGCACGGT 60.678 50.000 0.00 0.00 0.00 4.83
2351 2871 0.678366 TGTTGGTTGTCTGCACGGTT 60.678 50.000 0.00 0.00 0.00 4.44
2352 2872 0.454196 GTTGGTTGTCTGCACGGTTT 59.546 50.000 0.00 0.00 0.00 3.27
2353 2873 0.453793 TTGGTTGTCTGCACGGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
2361 2881 4.043200 GCACGGTTTGCCTGCTCC 62.043 66.667 0.00 0.00 46.63 4.70
2362 2882 2.281761 CACGGTTTGCCTGCTCCT 60.282 61.111 0.00 0.00 0.00 3.69
2363 2883 1.898574 CACGGTTTGCCTGCTCCTT 60.899 57.895 0.00 0.00 0.00 3.36
2364 2884 1.600916 ACGGTTTGCCTGCTCCTTC 60.601 57.895 0.00 0.00 0.00 3.46
2365 2885 1.302832 CGGTTTGCCTGCTCCTTCT 60.303 57.895 0.00 0.00 0.00 2.85
2366 2886 1.580845 CGGTTTGCCTGCTCCTTCTG 61.581 60.000 0.00 0.00 0.00 3.02
2367 2887 1.583477 GTTTGCCTGCTCCTTCTGC 59.417 57.895 0.00 0.00 0.00 4.26
2368 2888 1.604593 TTTGCCTGCTCCTTCTGCC 60.605 57.895 0.00 0.00 0.00 4.85
2369 2889 3.907260 TTGCCTGCTCCTTCTGCCG 62.907 63.158 0.00 0.00 0.00 5.69
2371 2891 4.479993 CCTGCTCCTTCTGCCGGG 62.480 72.222 2.18 0.00 32.32 5.73
2394 2914 4.090588 CTCCCGCCCGCCTGTTTA 62.091 66.667 0.00 0.00 0.00 2.01
2395 2915 3.400599 CTCCCGCCCGCCTGTTTAT 62.401 63.158 0.00 0.00 0.00 1.40
2396 2916 3.209097 CCCGCCCGCCTGTTTATG 61.209 66.667 0.00 0.00 0.00 1.90
2397 2917 3.887868 CCGCCCGCCTGTTTATGC 61.888 66.667 0.00 0.00 0.00 3.14
2398 2918 3.130819 CGCCCGCCTGTTTATGCA 61.131 61.111 0.00 0.00 0.00 3.96
2399 2919 2.489751 GCCCGCCTGTTTATGCAC 59.510 61.111 0.00 0.00 0.00 4.57
2400 2920 2.046285 GCCCGCCTGTTTATGCACT 61.046 57.895 0.00 0.00 0.00 4.40
2401 2921 1.802636 CCCGCCTGTTTATGCACTG 59.197 57.895 0.00 0.00 0.00 3.66
2402 2922 0.960364 CCCGCCTGTTTATGCACTGT 60.960 55.000 0.00 0.00 0.00 3.55
2403 2923 0.881118 CCGCCTGTTTATGCACTGTT 59.119 50.000 0.00 0.00 0.00 3.16
2404 2924 1.401409 CCGCCTGTTTATGCACTGTTG 60.401 52.381 0.00 0.00 0.00 3.33
2405 2925 1.401409 CGCCTGTTTATGCACTGTTGG 60.401 52.381 0.00 0.00 0.00 3.77
2406 2926 1.613437 GCCTGTTTATGCACTGTTGGT 59.387 47.619 0.00 0.00 0.00 3.67
2407 2927 2.817258 GCCTGTTTATGCACTGTTGGTA 59.183 45.455 0.00 0.00 0.00 3.25
2408 2928 3.443681 GCCTGTTTATGCACTGTTGGTAT 59.556 43.478 0.00 0.00 0.00 2.73
2409 2929 4.675146 GCCTGTTTATGCACTGTTGGTATG 60.675 45.833 0.00 0.00 0.00 2.39
2410 2930 4.458989 CCTGTTTATGCACTGTTGGTATGT 59.541 41.667 0.00 0.00 0.00 2.29
2411 2931 5.645929 CCTGTTTATGCACTGTTGGTATGTA 59.354 40.000 0.00 0.00 0.00 2.29
2412 2932 6.318648 CCTGTTTATGCACTGTTGGTATGTAT 59.681 38.462 0.00 0.00 0.00 2.29
2413 2933 7.082700 TGTTTATGCACTGTTGGTATGTATG 57.917 36.000 0.00 0.00 0.00 2.39
2414 2934 6.657117 TGTTTATGCACTGTTGGTATGTATGT 59.343 34.615 0.00 0.00 0.00 2.29
2415 2935 7.175816 TGTTTATGCACTGTTGGTATGTATGTT 59.824 33.333 0.00 0.00 0.00 2.71
2416 2936 5.565592 ATGCACTGTTGGTATGTATGTTG 57.434 39.130 0.00 0.00 0.00 3.33
2417 2937 3.190327 TGCACTGTTGGTATGTATGTTGC 59.810 43.478 0.00 0.00 0.00 4.17
2418 2938 3.440173 GCACTGTTGGTATGTATGTTGCT 59.560 43.478 0.00 0.00 0.00 3.91
2419 2939 4.082787 GCACTGTTGGTATGTATGTTGCTT 60.083 41.667 0.00 0.00 0.00 3.91
2420 2940 5.393124 CACTGTTGGTATGTATGTTGCTTG 58.607 41.667 0.00 0.00 0.00 4.01
2421 2941 5.048782 CACTGTTGGTATGTATGTTGCTTGT 60.049 40.000 0.00 0.00 0.00 3.16
2422 2942 6.148645 CACTGTTGGTATGTATGTTGCTTGTA 59.851 38.462 0.00 0.00 0.00 2.41
2423 2943 6.148811 ACTGTTGGTATGTATGTTGCTTGTAC 59.851 38.462 0.00 0.00 0.00 2.90
2424 2944 5.998363 TGTTGGTATGTATGTTGCTTGTACA 59.002 36.000 0.00 0.00 33.35 2.90
2425 2945 6.486993 TGTTGGTATGTATGTTGCTTGTACAA 59.513 34.615 8.28 8.28 32.65 2.41
2426 2946 7.175816 TGTTGGTATGTATGTTGCTTGTACAAT 59.824 33.333 9.13 0.00 32.65 2.71
2427 2947 7.695480 TGGTATGTATGTTGCTTGTACAATT 57.305 32.000 9.13 0.00 32.65 2.32
2428 2948 8.116651 TGGTATGTATGTTGCTTGTACAATTT 57.883 30.769 9.13 0.00 32.65 1.82
2429 2949 8.580720 TGGTATGTATGTTGCTTGTACAATTTT 58.419 29.630 9.13 0.00 32.65 1.82
2430 2950 9.418045 GGTATGTATGTTGCTTGTACAATTTTT 57.582 29.630 9.13 0.00 32.65 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.447157 AGTTGAATTGATGAACCTTTTCAAAAA 57.553 25.926 0.00 0.00 45.01 1.94
53 54 7.995289 GGACCTTTTCCAAATTTGTGAAAAAT 58.005 30.769 28.12 23.29 45.10 1.82
74 75 7.303261 CCGAACTGTTCTTAAATTTAAGGACC 58.697 38.462 32.53 21.65 44.89 4.46
81 82 6.492087 TGAATCCCCGAACTGTTCTTAAATTT 59.508 34.615 17.60 0.00 0.00 1.82
92 93 5.050091 CGATTATTTCTGAATCCCCGAACTG 60.050 44.000 0.00 0.00 30.83 3.16
227 411 9.513906 TGGTTTTCTCTTTTTCCTTCAATTTTT 57.486 25.926 0.00 0.00 0.00 1.94
261 626 4.011023 TGTTTGGGAACGAGTTTTTCTCA 58.989 39.130 0.00 0.00 42.88 3.27
318 683 3.501062 CGGTTTTTGGAACCTTCTAGGAC 59.499 47.826 6.40 0.00 37.67 3.85
333 698 1.133915 TCTCTCCTTGCACCGGTTTTT 60.134 47.619 2.97 0.00 0.00 1.94
338 703 1.817099 GCATCTCTCCTTGCACCGG 60.817 63.158 0.00 0.00 38.72 5.28
339 704 0.461548 TAGCATCTCTCCTTGCACCG 59.538 55.000 0.00 0.00 41.35 4.94
343 708 3.306641 CCCATAGTAGCATCTCTCCTTGC 60.307 52.174 0.00 0.00 39.17 4.01
357 722 1.563924 AAGTGTGTCGGCCCATAGTA 58.436 50.000 0.00 0.00 0.00 1.82
359 724 2.684001 TTAAGTGTGTCGGCCCATAG 57.316 50.000 0.00 0.00 0.00 2.23
367 732 6.292703 CCTTCACTAGGTTTTTAAGTGTGTCG 60.293 42.308 0.00 0.00 41.12 4.35
409 774 3.914364 GCATGTAGCACTGTTTACTTTGC 59.086 43.478 0.00 9.61 44.79 3.68
493 862 7.716612 TCTCGAGTTGAAATCATATCAAGCTA 58.283 34.615 13.13 0.00 37.46 3.32
497 866 8.546597 TGTTTCTCGAGTTGAAATCATATCAA 57.453 30.769 13.13 0.00 36.10 2.57
503 872 6.315144 TCAGTTTGTTTCTCGAGTTGAAATCA 59.685 34.615 13.13 1.98 36.10 2.57
591 993 7.510549 AGCTCAGCAAACTTATAGTGAAAAA 57.489 32.000 0.00 0.00 0.00 1.94
596 1025 4.177026 ACGAGCTCAGCAAACTTATAGTG 58.823 43.478 15.40 0.00 0.00 2.74
598 1027 5.786401 AAACGAGCTCAGCAAACTTATAG 57.214 39.130 15.40 0.00 0.00 1.31
652 1087 2.760650 GCACTTCTTATTTCCCCTTGGG 59.239 50.000 0.00 0.00 46.11 4.12
653 1088 3.445096 CAGCACTTCTTATTTCCCCTTGG 59.555 47.826 0.00 0.00 0.00 3.61
654 1089 4.335416 TCAGCACTTCTTATTTCCCCTTG 58.665 43.478 0.00 0.00 0.00 3.61
657 1092 6.261158 GTCTAATCAGCACTTCTTATTTCCCC 59.739 42.308 0.00 0.00 0.00 4.81
673 1108 4.021981 TCGTATCAGGCCATGTCTAATCAG 60.022 45.833 5.01 0.00 0.00 2.90
715 1155 3.566351 AGGTTGATTTAGGCCCATTAGC 58.434 45.455 0.00 0.00 0.00 3.09
899 1339 3.654143 GGTAGGGTTTGGGGGCGT 61.654 66.667 0.00 0.00 0.00 5.68
1448 1892 8.989131 ACATAAAGCATAATATAGGGGTACGAT 58.011 33.333 0.00 0.00 0.00 3.73
1517 1967 3.487120 AAACACCTCGAACTTAAGCCT 57.513 42.857 1.29 0.00 0.00 4.58
1518 1968 3.562557 TCAAAACACCTCGAACTTAAGCC 59.437 43.478 1.29 0.00 0.00 4.35
1687 2137 3.067106 GTTGGACGAACATGACAGTGAT 58.933 45.455 0.00 0.00 34.35 3.06
1718 2170 0.947244 GGCCTGCATAGACCAATTCG 59.053 55.000 0.00 0.00 0.00 3.34
1732 2184 0.534427 ATGACAGCATCATCGGCCTG 60.534 55.000 0.00 0.00 45.52 4.85
1742 2194 6.483307 ACGTTATTGCTATGTTATGACAGCAT 59.517 34.615 5.55 0.00 39.58 3.79
1744 2196 6.287107 ACGTTATTGCTATGTTATGACAGC 57.713 37.500 0.00 0.00 39.58 4.40
1750 2202 9.031360 CACTACTGAACGTTATTGCTATGTTAT 57.969 33.333 0.00 0.00 0.00 1.89
1784 2268 8.311836 CACTAAACCTATCACAAACCTAGAAGA 58.688 37.037 0.00 0.00 0.00 2.87
1832 2317 7.132863 GGTTTTATATAGCAGCACTAAACAGC 58.867 38.462 0.00 0.00 33.57 4.40
1836 2321 7.549842 TCAACGGTTTTATATAGCAGCACTAAA 59.450 33.333 0.00 0.00 33.57 1.85
1913 2402 9.838339 CCTACCTAAATTGAAAGACACTATCAT 57.162 33.333 0.00 0.00 0.00 2.45
1938 2427 9.482627 CTCATATCTAGTTCAATCCTGTAAACC 57.517 37.037 0.00 0.00 0.00 3.27
1954 2443 7.768120 AGCCAGTTCAAAGAAACTCATATCTAG 59.232 37.037 0.00 0.00 37.38 2.43
1958 2447 7.530426 AAAGCCAGTTCAAAGAAACTCATAT 57.470 32.000 0.00 0.00 37.38 1.78
1972 2461 4.335400 TCCAATTTCCAAAAGCCAGTTC 57.665 40.909 0.00 0.00 0.00 3.01
1998 2495 4.425520 GAACTATACTCACAGTGCAGGAC 58.574 47.826 0.00 0.00 0.00 3.85
2009 2506 0.750850 GCAGGGCGGAACTATACTCA 59.249 55.000 0.00 0.00 0.00 3.41
2021 2518 1.293924 CTCTAATTGACTGCAGGGCG 58.706 55.000 19.93 0.00 0.00 6.13
2030 2527 5.512473 CCTACGAGCTACACTCTAATTGAC 58.488 45.833 0.00 0.00 43.85 3.18
2035 2533 2.295885 GGCCTACGAGCTACACTCTAA 58.704 52.381 0.00 0.00 43.85 2.10
2036 2534 1.211212 TGGCCTACGAGCTACACTCTA 59.789 52.381 3.32 0.00 43.85 2.43
2041 2539 2.423898 GCCTGGCCTACGAGCTACA 61.424 63.158 7.66 0.00 0.00 2.74
2042 2540 2.128507 AGCCTGGCCTACGAGCTAC 61.129 63.158 16.57 0.00 30.46 3.58
2044 2542 3.465403 CAGCCTGGCCTACGAGCT 61.465 66.667 16.57 1.64 0.00 4.09
2054 2552 4.077184 TACGAACGCCCAGCCTGG 62.077 66.667 2.91 2.91 37.25 4.45
2063 2561 0.109226 AGCAGAAGACCTACGAACGC 60.109 55.000 0.00 0.00 0.00 4.84
2064 2562 1.068472 ACAGCAGAAGACCTACGAACG 60.068 52.381 0.00 0.00 0.00 3.95
2065 2563 2.726832 ACAGCAGAAGACCTACGAAC 57.273 50.000 0.00 0.00 0.00 3.95
2068 2566 5.163854 CCAAATAAACAGCAGAAGACCTACG 60.164 44.000 0.00 0.00 0.00 3.51
2071 2569 4.729868 ACCAAATAAACAGCAGAAGACCT 58.270 39.130 0.00 0.00 0.00 3.85
2072 2570 5.221244 ACAACCAAATAAACAGCAGAAGACC 60.221 40.000 0.00 0.00 0.00 3.85
2073 2571 5.687285 CACAACCAAATAAACAGCAGAAGAC 59.313 40.000 0.00 0.00 0.00 3.01
2074 2572 5.359576 ACACAACCAAATAAACAGCAGAAGA 59.640 36.000 0.00 0.00 0.00 2.87
2098 2614 9.434420 AACAAGAAAACAAGATTTTCACATGAA 57.566 25.926 13.09 0.00 40.01 2.57
2106 2622 8.314021 AGGAGTTGAACAAGAAAACAAGATTTT 58.686 29.630 0.00 0.00 0.00 1.82
2108 2624 7.410120 AGGAGTTGAACAAGAAAACAAGATT 57.590 32.000 0.00 0.00 0.00 2.40
2111 2627 6.693113 GCTAAGGAGTTGAACAAGAAAACAAG 59.307 38.462 0.00 0.00 0.00 3.16
2112 2628 6.151985 TGCTAAGGAGTTGAACAAGAAAACAA 59.848 34.615 0.00 0.00 0.00 2.83
2113 2629 5.650266 TGCTAAGGAGTTGAACAAGAAAACA 59.350 36.000 0.00 0.00 0.00 2.83
2114 2630 6.131544 TGCTAAGGAGTTGAACAAGAAAAC 57.868 37.500 0.00 0.00 0.00 2.43
2126 2642 2.790433 TGCGGATTTTGCTAAGGAGTT 58.210 42.857 0.00 0.00 0.00 3.01
2144 2660 3.056607 AGCAAACCCACTGTCATTAATGC 60.057 43.478 10.76 6.74 0.00 3.56
2149 2665 2.765699 ACAAAGCAAACCCACTGTCATT 59.234 40.909 0.00 0.00 0.00 2.57
2151 2667 1.846007 ACAAAGCAAACCCACTGTCA 58.154 45.000 0.00 0.00 0.00 3.58
2152 2668 2.959507 AACAAAGCAAACCCACTGTC 57.040 45.000 0.00 0.00 0.00 3.51
2153 2669 3.093057 TGTAACAAAGCAAACCCACTGT 58.907 40.909 0.00 0.00 0.00 3.55
2154 2670 3.791973 TGTAACAAAGCAAACCCACTG 57.208 42.857 0.00 0.00 0.00 3.66
2155 2671 4.692228 CAATGTAACAAAGCAAACCCACT 58.308 39.130 0.00 0.00 0.00 4.00
2156 2672 3.247411 GCAATGTAACAAAGCAAACCCAC 59.753 43.478 0.00 0.00 0.00 4.61
2157 2673 3.118629 TGCAATGTAACAAAGCAAACCCA 60.119 39.130 0.00 0.00 31.42 4.51
2178 2694 2.229784 GGATGGGAAACAAGCAAGAGTG 59.770 50.000 0.00 0.00 0.00 3.51
2179 2695 2.519013 GGATGGGAAACAAGCAAGAGT 58.481 47.619 0.00 0.00 0.00 3.24
2188 2704 5.448654 CAGATATTTCAGGGATGGGAAACA 58.551 41.667 0.00 0.00 35.99 2.83
2196 2712 3.117776 TGCACTGCAGATATTTCAGGGAT 60.118 43.478 23.35 0.00 33.25 3.85
2198 2714 2.646930 TGCACTGCAGATATTTCAGGG 58.353 47.619 23.35 0.00 33.32 4.45
2199 2715 4.337274 TCAATGCACTGCAGATATTTCAGG 59.663 41.667 23.35 6.01 43.65 3.86
2213 2733 2.038557 ACCGGTTTCTACTCAATGCACT 59.961 45.455 0.00 0.00 0.00 4.40
2223 2743 2.774687 ACCAACATCACCGGTTTCTAC 58.225 47.619 2.97 0.00 0.00 2.59
2233 2753 5.971202 CACAAAAGTTCAGTACCAACATCAC 59.029 40.000 7.78 0.00 0.00 3.06
2242 2762 6.190954 AGAAACACCACAAAAGTTCAGTAC 57.809 37.500 0.00 0.00 0.00 2.73
2247 2767 4.202020 GGAGGAGAAACACCACAAAAGTTC 60.202 45.833 0.00 0.00 0.00 3.01
2252 2772 1.850345 AGGGAGGAGAAACACCACAAA 59.150 47.619 0.00 0.00 0.00 2.83
2270 2790 2.148446 TTGCATCCCCTTGAATCAGG 57.852 50.000 0.00 0.00 0.00 3.86
2271 2791 4.221262 TCTTTTTGCATCCCCTTGAATCAG 59.779 41.667 0.00 0.00 0.00 2.90
2272 2792 4.158786 TCTTTTTGCATCCCCTTGAATCA 58.841 39.130 0.00 0.00 0.00 2.57
2273 2793 4.806640 TCTTTTTGCATCCCCTTGAATC 57.193 40.909 0.00 0.00 0.00 2.52
2274 2794 5.960202 ACTATCTTTTTGCATCCCCTTGAAT 59.040 36.000 0.00 0.00 0.00 2.57
2275 2795 5.332743 ACTATCTTTTTGCATCCCCTTGAA 58.667 37.500 0.00 0.00 0.00 2.69
2276 2796 4.934356 ACTATCTTTTTGCATCCCCTTGA 58.066 39.130 0.00 0.00 0.00 3.02
2277 2797 5.185635 TCAACTATCTTTTTGCATCCCCTTG 59.814 40.000 0.00 0.00 0.00 3.61
2278 2798 5.332743 TCAACTATCTTTTTGCATCCCCTT 58.667 37.500 0.00 0.00 0.00 3.95
2279 2799 4.934356 TCAACTATCTTTTTGCATCCCCT 58.066 39.130 0.00 0.00 0.00 4.79
2280 2800 5.659440 TTCAACTATCTTTTTGCATCCCC 57.341 39.130 0.00 0.00 0.00 4.81
2281 2801 8.854117 AGATATTCAACTATCTTTTTGCATCCC 58.146 33.333 0.00 0.00 35.39 3.85
2282 2802 9.674824 CAGATATTCAACTATCTTTTTGCATCC 57.325 33.333 0.00 0.00 36.53 3.51
2304 2824 9.298250 AGTGTATCATACCGTAACTATTCAGAT 57.702 33.333 0.00 0.00 0.00 2.90
2305 2825 8.687292 AGTGTATCATACCGTAACTATTCAGA 57.313 34.615 0.00 0.00 0.00 3.27
2306 2826 9.745880 AAAGTGTATCATACCGTAACTATTCAG 57.254 33.333 0.00 0.00 0.00 3.02
2307 2827 9.524106 CAAAGTGTATCATACCGTAACTATTCA 57.476 33.333 0.00 0.00 0.00 2.57
2308 2828 9.525409 ACAAAGTGTATCATACCGTAACTATTC 57.475 33.333 0.00 0.00 0.00 1.75
2309 2829 9.880157 AACAAAGTGTATCATACCGTAACTATT 57.120 29.630 0.00 0.00 0.00 1.73
2310 2830 9.309516 CAACAAAGTGTATCATACCGTAACTAT 57.690 33.333 0.00 0.00 0.00 2.12
2311 2831 7.760794 CCAACAAAGTGTATCATACCGTAACTA 59.239 37.037 0.00 0.00 0.00 2.24
2312 2832 6.592607 CCAACAAAGTGTATCATACCGTAACT 59.407 38.462 0.00 0.00 0.00 2.24
2313 2833 6.369615 ACCAACAAAGTGTATCATACCGTAAC 59.630 38.462 0.00 0.00 0.00 2.50
2314 2834 6.465948 ACCAACAAAGTGTATCATACCGTAA 58.534 36.000 0.00 0.00 0.00 3.18
2315 2835 6.040209 ACCAACAAAGTGTATCATACCGTA 57.960 37.500 0.00 0.00 0.00 4.02
2316 2836 4.901868 ACCAACAAAGTGTATCATACCGT 58.098 39.130 0.00 0.00 0.00 4.83
2317 2837 5.180492 ACAACCAACAAAGTGTATCATACCG 59.820 40.000 0.00 0.00 0.00 4.02
2318 2838 6.430000 AGACAACCAACAAAGTGTATCATACC 59.570 38.462 0.00 0.00 0.00 2.73
2319 2839 7.298122 CAGACAACCAACAAAGTGTATCATAC 58.702 38.462 0.00 0.00 0.00 2.39
2320 2840 6.072728 GCAGACAACCAACAAAGTGTATCATA 60.073 38.462 0.00 0.00 0.00 2.15
2321 2841 5.278463 GCAGACAACCAACAAAGTGTATCAT 60.278 40.000 0.00 0.00 0.00 2.45
2322 2842 4.036262 GCAGACAACCAACAAAGTGTATCA 59.964 41.667 0.00 0.00 0.00 2.15
2323 2843 4.036262 TGCAGACAACCAACAAAGTGTATC 59.964 41.667 0.00 0.00 0.00 2.24
2324 2844 3.951037 TGCAGACAACCAACAAAGTGTAT 59.049 39.130 0.00 0.00 0.00 2.29
2325 2845 3.127895 GTGCAGACAACCAACAAAGTGTA 59.872 43.478 0.00 0.00 0.00 2.90
2326 2846 2.094752 GTGCAGACAACCAACAAAGTGT 60.095 45.455 0.00 0.00 0.00 3.55
2327 2847 2.529151 GTGCAGACAACCAACAAAGTG 58.471 47.619 0.00 0.00 0.00 3.16
2328 2848 1.132262 CGTGCAGACAACCAACAAAGT 59.868 47.619 0.00 0.00 0.00 2.66
2329 2849 1.533756 CCGTGCAGACAACCAACAAAG 60.534 52.381 0.00 0.00 0.00 2.77
2330 2850 0.453793 CCGTGCAGACAACCAACAAA 59.546 50.000 0.00 0.00 0.00 2.83
2331 2851 0.678366 ACCGTGCAGACAACCAACAA 60.678 50.000 0.00 0.00 0.00 2.83
2332 2852 0.678366 AACCGTGCAGACAACCAACA 60.678 50.000 0.00 0.00 0.00 3.33
2333 2853 0.454196 AAACCGTGCAGACAACCAAC 59.546 50.000 0.00 0.00 0.00 3.77
2334 2854 0.453793 CAAACCGTGCAGACAACCAA 59.546 50.000 0.00 0.00 0.00 3.67
2335 2855 2.102554 CAAACCGTGCAGACAACCA 58.897 52.632 0.00 0.00 0.00 3.67
2345 2865 1.856265 GAAGGAGCAGGCAAACCGTG 61.856 60.000 0.00 0.00 42.76 4.94
2346 2866 1.600916 GAAGGAGCAGGCAAACCGT 60.601 57.895 0.00 0.00 42.76 4.83
2347 2867 1.302832 AGAAGGAGCAGGCAAACCG 60.303 57.895 0.00 0.00 42.76 4.44
2348 2868 1.871126 GCAGAAGGAGCAGGCAAACC 61.871 60.000 0.00 0.00 0.00 3.27
2349 2869 1.583477 GCAGAAGGAGCAGGCAAAC 59.417 57.895 0.00 0.00 0.00 2.93
2350 2870 1.604593 GGCAGAAGGAGCAGGCAAA 60.605 57.895 0.00 0.00 0.00 3.68
2351 2871 2.034687 GGCAGAAGGAGCAGGCAA 59.965 61.111 0.00 0.00 0.00 4.52
2352 2872 4.399395 CGGCAGAAGGAGCAGGCA 62.399 66.667 0.00 0.00 0.00 4.75
2354 2874 4.479993 CCCGGCAGAAGGAGCAGG 62.480 72.222 0.00 0.00 45.31 4.85
2377 2897 3.400599 ATAAACAGGCGGGCGGGAG 62.401 63.158 6.65 0.00 0.00 4.30
2378 2898 3.404438 ATAAACAGGCGGGCGGGA 61.404 61.111 6.65 0.00 0.00 5.14
2379 2899 3.209097 CATAAACAGGCGGGCGGG 61.209 66.667 6.65 0.69 0.00 6.13
2380 2900 3.887868 GCATAAACAGGCGGGCGG 61.888 66.667 0.00 0.00 0.00 6.13
2381 2901 3.130819 TGCATAAACAGGCGGGCG 61.131 61.111 0.00 0.00 0.00 6.13
2382 2902 2.046285 AGTGCATAAACAGGCGGGC 61.046 57.895 0.00 0.00 0.00 6.13
2383 2903 0.960364 ACAGTGCATAAACAGGCGGG 60.960 55.000 0.00 0.00 0.00 6.13
2384 2904 0.881118 AACAGTGCATAAACAGGCGG 59.119 50.000 0.00 0.00 0.00 6.13
2385 2905 1.401409 CCAACAGTGCATAAACAGGCG 60.401 52.381 0.00 0.00 0.00 5.52
2386 2906 1.613437 ACCAACAGTGCATAAACAGGC 59.387 47.619 0.00 0.00 0.00 4.85
2387 2907 4.458989 ACATACCAACAGTGCATAAACAGG 59.541 41.667 0.00 0.00 0.00 4.00
2388 2908 5.627499 ACATACCAACAGTGCATAAACAG 57.373 39.130 0.00 0.00 0.00 3.16
2389 2909 6.657117 ACATACATACCAACAGTGCATAAACA 59.343 34.615 0.00 0.00 0.00 2.83
2390 2910 7.083875 ACATACATACCAACAGTGCATAAAC 57.916 36.000 0.00 0.00 0.00 2.01
2391 2911 7.534282 CAACATACATACCAACAGTGCATAAA 58.466 34.615 0.00 0.00 0.00 1.40
2392 2912 6.404184 GCAACATACATACCAACAGTGCATAA 60.404 38.462 0.00 0.00 0.00 1.90
2393 2913 5.065859 GCAACATACATACCAACAGTGCATA 59.934 40.000 0.00 0.00 0.00 3.14
2394 2914 4.142403 GCAACATACATACCAACAGTGCAT 60.142 41.667 0.00 0.00 0.00 3.96
2395 2915 3.190327 GCAACATACATACCAACAGTGCA 59.810 43.478 0.00 0.00 0.00 4.57
2396 2916 3.440173 AGCAACATACATACCAACAGTGC 59.560 43.478 0.00 0.00 0.00 4.40
2397 2917 5.048782 ACAAGCAACATACATACCAACAGTG 60.049 40.000 0.00 0.00 0.00 3.66
2398 2918 5.070001 ACAAGCAACATACATACCAACAGT 58.930 37.500 0.00 0.00 0.00 3.55
2399 2919 5.627499 ACAAGCAACATACATACCAACAG 57.373 39.130 0.00 0.00 0.00 3.16
2400 2920 5.998363 TGTACAAGCAACATACATACCAACA 59.002 36.000 0.00 0.00 0.00 3.33
2401 2921 6.489127 TGTACAAGCAACATACATACCAAC 57.511 37.500 0.00 0.00 0.00 3.77
2402 2922 7.695480 ATTGTACAAGCAACATACATACCAA 57.305 32.000 14.65 0.00 0.00 3.67
2403 2923 7.695480 AATTGTACAAGCAACATACATACCA 57.305 32.000 14.65 0.00 0.00 3.25
2404 2924 8.980143 AAAATTGTACAAGCAACATACATACC 57.020 30.769 14.65 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.