Multiple sequence alignment - TraesCS1D01G154900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G154900 chr1D 100.000 3724 0 0 1 3724 216398656 216402379 0.000000e+00 6878.0
1 TraesCS1D01G154900 chr1D 86.357 645 42 24 3106 3707 414397288 414397929 0.000000e+00 662.0
2 TraesCS1D01G154900 chr1D 84.399 641 49 23 3103 3706 215005611 215004985 1.930000e-162 582.0
3 TraesCS1D01G154900 chr1D 89.860 286 18 7 3106 3386 395888329 395888050 1.270000e-94 357.0
4 TraesCS1D01G154900 chr1D 93.878 147 8 1 3564 3710 439926504 439926359 1.740000e-53 220.0
5 TraesCS1D01G154900 chr1B 94.914 2379 77 19 718 3085 309488832 309491177 0.000000e+00 3683.0
6 TraesCS1D01G154900 chr1B 82.917 521 40 18 227 704 309487661 309488175 1.240000e-114 424.0
7 TraesCS1D01G154900 chr1B 96.875 32 1 0 199 230 610174405 610174436 2.000000e-03 54.7
8 TraesCS1D01G154900 chr1A 93.832 2351 95 25 716 3054 277076053 277078365 0.000000e+00 3493.0
9 TraesCS1D01G154900 chr1A 90.538 539 22 8 199 719 277075181 277075708 0.000000e+00 686.0
10 TraesCS1D01G154900 chr1A 90.404 198 19 0 1 198 569341734 569341931 1.030000e-65 261.0
11 TraesCS1D01G154900 chr6D 86.406 640 39 21 3106 3706 342074360 342073730 0.000000e+00 656.0
12 TraesCS1D01G154900 chr6D 100.000 30 0 0 195 224 472373345 472373316 5.200000e-04 56.5
13 TraesCS1D01G154900 chr2D 86.043 652 38 15 3106 3710 441033790 441033145 0.000000e+00 651.0
14 TraesCS1D01G154900 chr2D 83.333 654 46 24 3106 3710 442017766 442017127 2.530000e-151 545.0
15 TraesCS1D01G154900 chr2D 83.824 612 49 21 3107 3670 503232765 503232156 1.520000e-148 536.0
16 TraesCS1D01G154900 chr2D 84.679 483 32 22 3106 3566 560206329 560206791 9.490000e-121 444.0
17 TraesCS1D01G154900 chr7A 85.891 645 49 20 3103 3707 730079382 730080024 0.000000e+00 649.0
18 TraesCS1D01G154900 chr7A 84.129 649 56 22 3103 3707 730099257 730099902 5.360000e-163 584.0
19 TraesCS1D01G154900 chr7A 81.227 538 63 26 3210 3715 83725068 83724537 2.080000e-107 399.0
20 TraesCS1D01G154900 chr7A 91.919 198 16 0 2 199 27400329 27400526 1.020000e-70 278.0
21 TraesCS1D01G154900 chr7A 90.291 206 20 0 1 206 717839972 717839767 1.700000e-68 270.0
22 TraesCS1D01G154900 chr5D 85.430 604 45 19 3102 3670 423510040 423509445 4.140000e-164 588.0
23 TraesCS1D01G154900 chr5D 100.000 31 0 0 199 229 495161412 495161382 1.440000e-04 58.4
24 TraesCS1D01G154900 chr7D 85.209 622 34 18 3101 3670 106128088 106128703 1.490000e-163 586.0
25 TraesCS1D01G154900 chr7D 83.531 589 39 23 3103 3643 379291734 379292312 7.180000e-137 497.0
26 TraesCS1D01G154900 chr3B 90.887 417 18 5 1213 1629 734367643 734368039 3.270000e-150 542.0
27 TraesCS1D01G154900 chr4D 83.308 653 39 24 3103 3707 497607992 497608622 4.230000e-149 538.0
28 TraesCS1D01G154900 chr4D 82.440 672 47 33 3104 3710 66957972 66957307 4.260000e-144 521.0
29 TraesCS1D01G154900 chr4D 82.515 652 48 21 3103 3707 465157984 465158616 2.570000e-141 512.0
30 TraesCS1D01G154900 chr4D 84.416 539 36 23 3214 3707 20536233 20536768 1.550000e-133 486.0
31 TraesCS1D01G154900 chr6A 82.870 648 57 24 3100 3699 578693483 578694124 1.970000e-147 532.0
32 TraesCS1D01G154900 chr6A 100.000 31 0 0 199 229 287115426 287115456 1.440000e-04 58.4
33 TraesCS1D01G154900 chr7B 90.408 417 20 4 1213 1629 659008830 659009226 7.080000e-147 531.0
34 TraesCS1D01G154900 chr2A 80.469 640 76 32 3104 3707 470655870 470656496 9.490000e-121 444.0
35 TraesCS1D01G154900 chr2A 100.000 29 0 0 199 227 668087630 668087658 2.000000e-03 54.7
36 TraesCS1D01G154900 chr2A 100.000 28 0 0 199 226 762691396 762691423 7.000000e-03 52.8
37 TraesCS1D01G154900 chr5A 85.714 301 24 4 3426 3707 227405418 227405718 2.170000e-77 300.0
38 TraesCS1D01G154900 chr5A 79.431 457 42 26 3263 3670 707070705 707070252 3.660000e-70 276.0
39 TraesCS1D01G154900 chr5A 90.909 198 18 0 1 198 91815468 91815665 2.200000e-67 267.0
40 TraesCS1D01G154900 chr5A 90.404 198 19 0 1 198 596587367 596587564 1.030000e-65 261.0
41 TraesCS1D01G154900 chr5A 100.000 31 0 0 199 229 428189376 428189346 1.440000e-04 58.4
42 TraesCS1D01G154900 chr5A 97.059 34 0 1 192 224 594960899 594960866 5.200000e-04 56.5
43 TraesCS1D01G154900 chr6B 89.573 211 22 0 1 211 712458157 712457947 6.130000e-68 268.0
44 TraesCS1D01G154900 chr2B 90.909 198 18 0 1 198 450718297 450718494 2.200000e-67 267.0
45 TraesCS1D01G154900 chr3A 89.756 205 20 1 1 204 333328117 333328321 1.030000e-65 261.0
46 TraesCS1D01G154900 chr3A 89.756 205 20 1 1 204 529744780 529744984 1.030000e-65 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G154900 chr1D 216398656 216402379 3723 False 6878.0 6878 100.0000 1 3724 1 chr1D.!!$F1 3723
1 TraesCS1D01G154900 chr1D 414397288 414397929 641 False 662.0 662 86.3570 3106 3707 1 chr1D.!!$F2 601
2 TraesCS1D01G154900 chr1D 215004985 215005611 626 True 582.0 582 84.3990 3103 3706 1 chr1D.!!$R1 603
3 TraesCS1D01G154900 chr1B 309487661 309491177 3516 False 2053.5 3683 88.9155 227 3085 2 chr1B.!!$F2 2858
4 TraesCS1D01G154900 chr1A 277075181 277078365 3184 False 2089.5 3493 92.1850 199 3054 2 chr1A.!!$F2 2855
5 TraesCS1D01G154900 chr6D 342073730 342074360 630 True 656.0 656 86.4060 3106 3706 1 chr6D.!!$R1 600
6 TraesCS1D01G154900 chr2D 441033145 441033790 645 True 651.0 651 86.0430 3106 3710 1 chr2D.!!$R1 604
7 TraesCS1D01G154900 chr2D 442017127 442017766 639 True 545.0 545 83.3330 3106 3710 1 chr2D.!!$R2 604
8 TraesCS1D01G154900 chr2D 503232156 503232765 609 True 536.0 536 83.8240 3107 3670 1 chr2D.!!$R3 563
9 TraesCS1D01G154900 chr7A 730079382 730080024 642 False 649.0 649 85.8910 3103 3707 1 chr7A.!!$F2 604
10 TraesCS1D01G154900 chr7A 730099257 730099902 645 False 584.0 584 84.1290 3103 3707 1 chr7A.!!$F3 604
11 TraesCS1D01G154900 chr7A 83724537 83725068 531 True 399.0 399 81.2270 3210 3715 1 chr7A.!!$R1 505
12 TraesCS1D01G154900 chr5D 423509445 423510040 595 True 588.0 588 85.4300 3102 3670 1 chr5D.!!$R1 568
13 TraesCS1D01G154900 chr7D 106128088 106128703 615 False 586.0 586 85.2090 3101 3670 1 chr7D.!!$F1 569
14 TraesCS1D01G154900 chr7D 379291734 379292312 578 False 497.0 497 83.5310 3103 3643 1 chr7D.!!$F2 540
15 TraesCS1D01G154900 chr4D 497607992 497608622 630 False 538.0 538 83.3080 3103 3707 1 chr4D.!!$F3 604
16 TraesCS1D01G154900 chr4D 66957307 66957972 665 True 521.0 521 82.4400 3104 3710 1 chr4D.!!$R1 606
17 TraesCS1D01G154900 chr4D 465157984 465158616 632 False 512.0 512 82.5150 3103 3707 1 chr4D.!!$F2 604
18 TraesCS1D01G154900 chr4D 20536233 20536768 535 False 486.0 486 84.4160 3214 3707 1 chr4D.!!$F1 493
19 TraesCS1D01G154900 chr6A 578693483 578694124 641 False 532.0 532 82.8700 3100 3699 1 chr6A.!!$F2 599
20 TraesCS1D01G154900 chr2A 470655870 470656496 626 False 444.0 444 80.4690 3104 3707 1 chr2A.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1681 0.031994 GTGCCCATTGTCAACGCTTT 59.968 50.0 0.00 0.00 0.00 3.51 F
1173 2056 0.311790 GTGCTGCTGCTGCTGTTTAA 59.688 50.0 27.67 7.82 39.81 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 2695 0.741927 TGGTGAGCACTGCGATGATG 60.742 55.0 0.16 0.00 0.00 3.07 R
3101 3993 0.599728 CGGCTGGAGATGCTCTAAGC 60.600 60.0 11.59 11.59 42.82 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 9.851686 AAATCTAGTGATACTAATTTGATGCCA 57.148 29.630 0.00 0.00 29.00 4.92
105 106 9.060347 AGTGATACTAATTTGATGCCATAAGTG 57.940 33.333 0.00 0.00 0.00 3.16
106 107 7.805071 GTGATACTAATTTGATGCCATAAGTGC 59.195 37.037 0.00 0.00 0.00 4.40
107 108 7.720957 TGATACTAATTTGATGCCATAAGTGCT 59.279 33.333 0.00 0.00 0.00 4.40
108 109 6.780457 ACTAATTTGATGCCATAAGTGCTT 57.220 33.333 0.00 0.00 0.00 3.91
109 110 7.174107 ACTAATTTGATGCCATAAGTGCTTT 57.826 32.000 0.00 0.00 0.00 3.51
110 111 7.614494 ACTAATTTGATGCCATAAGTGCTTTT 58.386 30.769 0.00 0.00 0.00 2.27
111 112 8.748412 ACTAATTTGATGCCATAAGTGCTTTTA 58.252 29.630 0.00 0.00 0.00 1.52
112 113 7.832503 AATTTGATGCCATAAGTGCTTTTAC 57.167 32.000 0.00 0.00 0.00 2.01
113 114 6.588719 TTTGATGCCATAAGTGCTTTTACT 57.411 33.333 0.00 0.00 0.00 2.24
114 115 6.588719 TTGATGCCATAAGTGCTTTTACTT 57.411 33.333 0.00 0.00 43.03 2.24
115 116 6.588719 TGATGCCATAAGTGCTTTTACTTT 57.411 33.333 0.00 0.00 41.01 2.66
116 117 6.991938 TGATGCCATAAGTGCTTTTACTTTT 58.008 32.000 0.00 0.00 41.01 2.27
117 118 7.441017 TGATGCCATAAGTGCTTTTACTTTTT 58.559 30.769 0.00 0.00 41.01 1.94
118 119 7.598493 TGATGCCATAAGTGCTTTTACTTTTTC 59.402 33.333 0.00 0.00 41.01 2.29
119 120 6.220201 TGCCATAAGTGCTTTTACTTTTTCC 58.780 36.000 0.00 0.00 41.01 3.13
120 121 6.041523 TGCCATAAGTGCTTTTACTTTTTCCT 59.958 34.615 0.00 0.00 41.01 3.36
121 122 7.231722 TGCCATAAGTGCTTTTACTTTTTCCTA 59.768 33.333 0.00 0.00 41.01 2.94
122 123 8.085909 GCCATAAGTGCTTTTACTTTTTCCTAA 58.914 33.333 0.00 0.00 41.01 2.69
123 124 9.974980 CCATAAGTGCTTTTACTTTTTCCTAAA 57.025 29.630 0.00 0.00 41.01 1.85
138 139 6.723298 TTTCCTAAAAAGATGGTCAAAGCA 57.277 33.333 0.00 0.00 0.00 3.91
139 140 6.723298 TTCCTAAAAAGATGGTCAAAGCAA 57.277 33.333 0.00 0.00 0.00 3.91
140 141 6.916360 TCCTAAAAAGATGGTCAAAGCAAT 57.084 33.333 0.00 0.00 0.00 3.56
141 142 8.415950 TTCCTAAAAAGATGGTCAAAGCAATA 57.584 30.769 0.00 0.00 0.00 1.90
142 143 8.415950 TCCTAAAAAGATGGTCAAAGCAATAA 57.584 30.769 0.00 0.00 0.00 1.40
143 144 8.865090 TCCTAAAAAGATGGTCAAAGCAATAAA 58.135 29.630 0.00 0.00 0.00 1.40
144 145 9.487790 CCTAAAAAGATGGTCAAAGCAATAAAA 57.512 29.630 0.00 0.00 0.00 1.52
146 147 8.962884 AAAAAGATGGTCAAAGCAATAAAACT 57.037 26.923 0.00 0.00 0.00 2.66
147 148 8.962884 AAAAGATGGTCAAAGCAATAAAACTT 57.037 26.923 0.00 0.00 0.00 2.66
148 149 8.962884 AAAGATGGTCAAAGCAATAAAACTTT 57.037 26.923 0.00 0.00 36.56 2.66
185 186 8.475331 AAAACTAGATGTACACTTATTCACGG 57.525 34.615 0.00 0.00 0.00 4.94
186 187 7.400599 AACTAGATGTACACTTATTCACGGA 57.599 36.000 0.00 0.00 0.00 4.69
187 188 6.793349 ACTAGATGTACACTTATTCACGGAC 58.207 40.000 0.00 0.00 0.00 4.79
188 189 4.669318 AGATGTACACTTATTCACGGACG 58.331 43.478 0.00 0.00 0.00 4.79
189 190 4.397103 AGATGTACACTTATTCACGGACGA 59.603 41.667 0.00 0.00 0.00 4.20
190 191 4.502171 TGTACACTTATTCACGGACGAA 57.498 40.909 0.00 0.00 0.00 3.85
191 192 4.478699 TGTACACTTATTCACGGACGAAG 58.521 43.478 0.00 0.00 0.00 3.79
192 193 3.928727 ACACTTATTCACGGACGAAGA 57.071 42.857 0.00 0.00 0.00 2.87
193 194 3.834610 ACACTTATTCACGGACGAAGAG 58.165 45.455 0.00 0.00 0.00 2.85
194 195 3.504906 ACACTTATTCACGGACGAAGAGA 59.495 43.478 0.00 0.00 0.00 3.10
195 196 4.099120 CACTTATTCACGGACGAAGAGAG 58.901 47.826 0.00 0.00 0.00 3.20
196 197 3.757493 ACTTATTCACGGACGAAGAGAGT 59.243 43.478 0.00 0.29 0.00 3.24
197 198 4.940046 ACTTATTCACGGACGAAGAGAGTA 59.060 41.667 0.00 0.00 0.00 2.59
230 231 5.656213 TTACAGAGGGAGTAGTGTTTAGC 57.344 43.478 0.00 0.00 0.00 3.09
324 325 7.167968 CCGGTTCAACTATTTCATTTGCATATG 59.832 37.037 10.56 10.56 0.00 1.78
340 341 5.432645 TGCATATGAACACCTTAATTCCGA 58.567 37.500 6.97 0.00 0.00 4.55
479 508 5.048643 CAGGTGAGTATTCAGACGTATAGGG 60.049 48.000 0.00 0.00 32.98 3.53
484 513 1.700955 TTCAGACGTATAGGGGGAGC 58.299 55.000 0.00 0.00 0.00 4.70
515 547 1.772182 CATCTTCCGGTAGTCGATGC 58.228 55.000 8.06 0.00 42.43 3.91
577 609 2.105006 ATGTGCAGACCAGTCATCAC 57.895 50.000 12.58 12.58 35.85 3.06
636 671 0.106268 TTGCCATGTCCCAGTTGTGT 60.106 50.000 0.00 0.00 0.00 3.72
637 672 0.767998 TGCCATGTCCCAGTTGTGTA 59.232 50.000 0.00 0.00 0.00 2.90
638 673 1.165270 GCCATGTCCCAGTTGTGTAC 58.835 55.000 0.00 0.00 0.00 2.90
639 674 1.821216 CCATGTCCCAGTTGTGTACC 58.179 55.000 0.00 0.00 0.00 3.34
640 675 1.073125 CCATGTCCCAGTTGTGTACCA 59.927 52.381 0.00 0.00 0.00 3.25
641 676 2.151202 CATGTCCCAGTTGTGTACCAC 58.849 52.381 0.00 0.00 34.56 4.16
644 679 2.631062 TGTCCCAGTTGTGTACCACTAG 59.369 50.000 0.00 0.00 35.11 2.57
672 725 2.159099 TCGACCATGCCACTGTCTATTC 60.159 50.000 0.00 0.00 0.00 1.75
794 1669 1.322538 GGATTTTCTGCGGTGCCCAT 61.323 55.000 0.00 0.00 0.00 4.00
806 1681 0.031994 GTGCCCATTGTCAACGCTTT 59.968 50.000 0.00 0.00 0.00 3.51
814 1689 0.741915 TGTCAACGCTTTGTTTCCCC 59.258 50.000 2.56 0.00 39.29 4.81
870 1745 7.081976 ACCGTGCTATAAAATTTTGTCAACTC 58.918 34.615 13.76 1.34 0.00 3.01
959 1839 0.326618 ATCTACCACCAGGGACAGGG 60.327 60.000 0.00 0.00 40.36 4.45
960 1840 1.080354 CTACCACCAGGGACAGGGA 59.920 63.158 0.00 0.00 40.36 4.20
961 1841 1.229400 TACCACCAGGGACAGGGAC 60.229 63.158 0.00 0.00 40.36 4.46
962 1842 2.038545 TACCACCAGGGACAGGGACA 62.039 60.000 0.00 0.00 40.36 4.02
963 1843 2.596851 CCACCAGGGACAGGGACAG 61.597 68.421 0.00 0.00 40.36 3.51
964 1844 2.203998 ACCAGGGACAGGGACAGG 60.204 66.667 0.00 0.00 40.36 4.00
965 1845 3.011517 CCAGGGACAGGGACAGGG 61.012 72.222 0.00 0.00 0.00 4.45
981 1861 4.475135 GGACAGGGAGGAAGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
1142 2025 3.656559 TCGGTTAGTACAACTTTCAGGC 58.343 45.455 0.00 0.00 0.00 4.85
1153 2036 2.760374 ACTTTCAGGCTTTCAGACTCG 58.240 47.619 0.00 0.00 24.26 4.18
1154 2037 2.072298 CTTTCAGGCTTTCAGACTCGG 58.928 52.381 0.00 0.00 24.26 4.63
1155 2038 1.048601 TTCAGGCTTTCAGACTCGGT 58.951 50.000 0.00 0.00 24.26 4.69
1157 2040 1.004440 AGGCTTTCAGACTCGGTGC 60.004 57.895 0.00 0.00 0.00 5.01
1173 2056 0.311790 GTGCTGCTGCTGCTGTTTAA 59.688 50.000 27.67 7.82 39.81 1.52
1349 2232 2.433145 CTGCGCTTCTTCGAGCCA 60.433 61.111 9.73 0.00 39.51 4.75
1442 2325 0.595095 GCCTTGGCTTCAACTCAGTG 59.405 55.000 4.11 0.00 0.00 3.66
1461 2344 1.002134 GGCTTCTACCAGGCAAGCA 60.002 57.895 16.66 0.00 43.70 3.91
1462 2345 0.609131 GGCTTCTACCAGGCAAGCAA 60.609 55.000 16.66 0.00 43.70 3.91
1463 2346 0.807496 GCTTCTACCAGGCAAGCAAG 59.193 55.000 11.87 5.76 41.87 4.01
1464 2347 0.807496 CTTCTACCAGGCAAGCAAGC 59.193 55.000 0.00 0.00 0.00 4.01
1488 2371 3.285484 CCCAAACTGCTGATGATAGCTT 58.715 45.455 0.00 0.00 44.01 3.74
1499 2387 6.591448 TGCTGATGATAGCTTATACCATTTCG 59.409 38.462 0.00 0.00 44.01 3.46
1529 2417 5.592104 TCTTACTCGTGGATTTGCTATGA 57.408 39.130 0.00 0.00 0.00 2.15
1540 2428 5.163591 TGGATTTGCTATGATTGTCTTGCTG 60.164 40.000 0.00 0.00 0.00 4.41
1567 2455 3.244078 TGACCAAGCTGGCTATTATACCG 60.244 47.826 0.00 0.00 42.67 4.02
1617 2505 1.889545 AGCAAGAAGTTCAGGTGCTC 58.110 50.000 17.99 0.00 41.62 4.26
1633 2521 2.499289 GTGCTCCTCAGATTCCTTCTCA 59.501 50.000 0.00 0.00 29.93 3.27
1643 2531 5.055812 CAGATTCCTTCTCACATTAGGCTC 58.944 45.833 0.00 0.00 29.93 4.70
1652 2540 4.532126 TCTCACATTAGGCTCTTTCCTGAA 59.468 41.667 0.00 0.00 37.01 3.02
1653 2541 5.190528 TCTCACATTAGGCTCTTTCCTGAAT 59.809 40.000 0.00 0.00 37.01 2.57
1654 2542 6.384015 TCTCACATTAGGCTCTTTCCTGAATA 59.616 38.462 0.00 0.00 37.01 1.75
1655 2543 7.071698 TCTCACATTAGGCTCTTTCCTGAATAT 59.928 37.037 0.00 0.00 37.01 1.28
1656 2544 7.577303 TCACATTAGGCTCTTTCCTGAATATT 58.423 34.615 0.00 0.00 37.01 1.28
1657 2545 7.500227 TCACATTAGGCTCTTTCCTGAATATTG 59.500 37.037 0.00 0.00 37.01 1.90
1658 2546 7.500227 CACATTAGGCTCTTTCCTGAATATTGA 59.500 37.037 0.00 0.00 37.01 2.57
1659 2547 8.055181 ACATTAGGCTCTTTCCTGAATATTGAA 58.945 33.333 0.00 0.00 37.01 2.69
1660 2548 7.865706 TTAGGCTCTTTCCTGAATATTGAAC 57.134 36.000 0.00 0.00 37.01 3.18
1661 2549 4.878397 AGGCTCTTTCCTGAATATTGAACG 59.122 41.667 0.00 0.00 34.56 3.95
1662 2550 4.496507 GGCTCTTTCCTGAATATTGAACGC 60.497 45.833 0.00 0.00 0.00 4.84
1663 2551 4.333926 GCTCTTTCCTGAATATTGAACGCT 59.666 41.667 0.00 0.00 0.00 5.07
1664 2552 5.728898 GCTCTTTCCTGAATATTGAACGCTG 60.729 44.000 0.00 0.00 0.00 5.18
1665 2553 5.487433 TCTTTCCTGAATATTGAACGCTGA 58.513 37.500 0.00 0.00 0.00 4.26
1676 2564 8.437360 AATATTGAACGCTGATCATCTTGTAA 57.563 30.769 0.00 0.00 0.00 2.41
1688 2576 4.713553 TCATCTTGTAACAAGTTCAGCCA 58.286 39.130 0.00 0.00 0.00 4.75
1807 2695 1.068921 GCTCAATCTCCTCGGCTCC 59.931 63.158 0.00 0.00 0.00 4.70
1925 2814 2.730550 AGCCTGTTAACATTTGCAGC 57.269 45.000 20.32 12.41 0.00 5.25
1962 2851 9.685276 ATATTTGTGTTCATGTCATCTTCCTTA 57.315 29.630 0.00 0.00 0.00 2.69
2053 2942 1.227263 CTCCCTGTACCAATCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
2151 3040 6.443792 TCGAAGTCGTGGTACGTACTATATA 58.556 40.000 24.07 6.31 43.14 0.86
2153 3042 7.062255 TCGAAGTCGTGGTACGTACTATATATG 59.938 40.741 24.07 11.46 43.14 1.78
2154 3043 6.414408 AGTCGTGGTACGTACTATATATGC 57.586 41.667 24.07 6.54 43.14 3.14
2155 3044 5.934043 AGTCGTGGTACGTACTATATATGCA 59.066 40.000 24.07 9.04 43.14 3.96
2490 3379 3.296709 GAAGAAGACCGAGGGCGCA 62.297 63.158 10.83 0.00 35.83 6.09
2657 3546 4.704833 TGGCAGGAGAGCAACGGC 62.705 66.667 0.00 0.00 41.61 5.68
2765 3654 3.741344 GGTAAGTTGGTATAGCAGCATCG 59.259 47.826 19.08 0.00 33.85 3.84
2767 3656 0.868406 GTTGGTATAGCAGCATCGGC 59.132 55.000 13.16 0.00 41.61 5.54
2887 3776 5.678955 AGTTCTGGAAGTAATGTAGGACC 57.321 43.478 0.00 0.00 33.76 4.46
2919 3808 6.180472 CCAACTTCTCCTACAATGGTTGTAT 58.820 40.000 3.29 0.00 44.46 2.29
2929 3818 3.204158 ACAATGGTTGTATGGCAGGGATA 59.796 43.478 0.00 0.00 43.27 2.59
2973 3862 1.604604 TCCGGAAGTTCTGCAAAAGG 58.395 50.000 0.00 0.00 0.00 3.11
3054 3944 0.951558 TTCCAGAGAAAACGCAAGGC 59.048 50.000 0.00 0.00 46.39 4.35
3055 3945 0.108585 TCCAGAGAAAACGCAAGGCT 59.891 50.000 0.00 0.00 46.39 4.58
3057 3947 1.335324 CCAGAGAAAACGCAAGGCTTG 60.335 52.381 22.75 22.75 46.39 4.01
3071 3963 3.185246 AGGCTTGTCCTCGATACATTG 57.815 47.619 1.98 1.05 43.20 2.82
3082 3974 7.233553 TGTCCTCGATACATTGATAGGAAGAAT 59.766 37.037 0.00 0.00 0.00 2.40
3083 3975 8.740906 GTCCTCGATACATTGATAGGAAGAATA 58.259 37.037 0.00 0.00 0.00 1.75
3084 3976 8.961634 TCCTCGATACATTGATAGGAAGAATAG 58.038 37.037 0.00 0.00 0.00 1.73
3085 3977 8.961634 CCTCGATACATTGATAGGAAGAATAGA 58.038 37.037 0.00 0.00 0.00 1.98
3087 3979 9.521841 TCGATACATTGATAGGAAGAATAGAGT 57.478 33.333 0.00 0.00 0.00 3.24
3099 3991 8.079211 AGGAAGAATAGAGTTATAGTTGCACA 57.921 34.615 0.00 0.00 0.00 4.57
3100 3992 8.540388 AGGAAGAATAGAGTTATAGTTGCACAA 58.460 33.333 0.00 0.00 0.00 3.33
3101 3993 8.821894 GGAAGAATAGAGTTATAGTTGCACAAG 58.178 37.037 0.00 0.00 0.00 3.16
3333 4269 9.757859 TCGGCGTTACATAAGTTATTTAAAAAG 57.242 29.630 6.85 1.45 0.00 2.27
3359 4298 0.896940 ACTACGGGGCGAAGAAGTCA 60.897 55.000 0.00 0.00 0.00 3.41
3406 4363 4.395583 GTCGTCGTCGTCGGCCTT 62.396 66.667 11.74 0.00 38.56 4.35
3410 4386 3.437795 TCGTCGTCGGCCTTCTCC 61.438 66.667 0.00 0.00 37.69 3.71
3506 4514 3.966026 GACCACGCCTCCTTCGTCG 62.966 68.421 0.00 0.00 38.19 5.12
3531 4548 2.126424 GACGCCGAGCTTCGAAGT 60.126 61.111 25.24 12.81 43.74 3.01
3710 4741 2.544726 GTCTTTGGCTTGACGGAGG 58.455 57.895 0.00 0.00 0.00 4.30
3711 4742 1.302511 TCTTTGGCTTGACGGAGGC 60.303 57.895 2.95 2.95 42.15 4.70
3717 4748 2.747855 CTTGACGGAGGCAAGCCC 60.748 66.667 7.62 0.00 36.66 5.19
3718 4749 4.344865 TTGACGGAGGCAAGCCCC 62.345 66.667 7.62 7.92 36.58 5.80
3720 4751 4.785453 GACGGAGGCAAGCCCCAG 62.785 72.222 7.62 0.00 36.58 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.851686 TGGCATCAAATTAGTATCACTAGATTT 57.148 29.630 0.00 0.00 35.67 2.17
79 80 9.060347 CACTTATGGCATCAAATTAGTATCACT 57.940 33.333 1.65 0.00 0.00 3.41
80 81 7.805071 GCACTTATGGCATCAAATTAGTATCAC 59.195 37.037 1.65 0.00 0.00 3.06
81 82 7.720957 AGCACTTATGGCATCAAATTAGTATCA 59.279 33.333 1.65 0.00 0.00 2.15
82 83 8.103948 AGCACTTATGGCATCAAATTAGTATC 57.896 34.615 1.65 0.00 0.00 2.24
83 84 8.469309 AAGCACTTATGGCATCAAATTAGTAT 57.531 30.769 1.65 0.00 0.00 2.12
84 85 7.880160 AAGCACTTATGGCATCAAATTAGTA 57.120 32.000 1.65 0.00 0.00 1.82
85 86 6.780457 AAGCACTTATGGCATCAAATTAGT 57.220 33.333 1.65 0.00 0.00 2.24
86 87 9.023967 GTAAAAGCACTTATGGCATCAAATTAG 57.976 33.333 1.65 0.00 0.00 1.73
87 88 8.748412 AGTAAAAGCACTTATGGCATCAAATTA 58.252 29.630 1.65 0.00 0.00 1.40
88 89 7.614494 AGTAAAAGCACTTATGGCATCAAATT 58.386 30.769 1.65 0.00 0.00 1.82
89 90 7.174107 AGTAAAAGCACTTATGGCATCAAAT 57.826 32.000 1.65 0.00 0.00 2.32
90 91 6.588719 AGTAAAAGCACTTATGGCATCAAA 57.411 33.333 1.65 0.00 0.00 2.69
91 92 6.588719 AAGTAAAAGCACTTATGGCATCAA 57.411 33.333 1.65 0.00 36.99 2.57
92 93 6.588719 AAAGTAAAAGCACTTATGGCATCA 57.411 33.333 1.65 0.00 37.78 3.07
93 94 7.063426 GGAAAAAGTAAAAGCACTTATGGCATC 59.937 37.037 1.65 0.00 37.78 3.91
94 95 6.873605 GGAAAAAGTAAAAGCACTTATGGCAT 59.126 34.615 4.88 4.88 37.78 4.40
95 96 6.041523 AGGAAAAAGTAAAAGCACTTATGGCA 59.958 34.615 0.00 0.00 37.78 4.92
96 97 6.455647 AGGAAAAAGTAAAAGCACTTATGGC 58.544 36.000 0.00 0.00 37.78 4.40
97 98 9.974980 TTTAGGAAAAAGTAAAAGCACTTATGG 57.025 29.630 0.00 0.00 37.78 2.74
113 114 7.560368 TGCTTTGACCATCTTTTTAGGAAAAA 58.440 30.769 0.00 0.00 37.99 1.94
114 115 7.118496 TGCTTTGACCATCTTTTTAGGAAAA 57.882 32.000 0.00 0.00 33.86 2.29
115 116 6.723298 TGCTTTGACCATCTTTTTAGGAAA 57.277 33.333 0.00 0.00 0.00 3.13
116 117 6.723298 TTGCTTTGACCATCTTTTTAGGAA 57.277 33.333 0.00 0.00 0.00 3.36
117 118 6.916360 ATTGCTTTGACCATCTTTTTAGGA 57.084 33.333 0.00 0.00 0.00 2.94
118 119 9.487790 TTTTATTGCTTTGACCATCTTTTTAGG 57.512 29.630 0.00 0.00 0.00 2.69
121 122 8.962884 AGTTTTATTGCTTTGACCATCTTTTT 57.037 26.923 0.00 0.00 0.00 1.94
122 123 8.962884 AAGTTTTATTGCTTTGACCATCTTTT 57.037 26.923 0.00 0.00 0.00 2.27
123 124 8.962884 AAAGTTTTATTGCTTTGACCATCTTT 57.037 26.923 0.00 0.00 34.11 2.52
159 160 8.932791 CCGTGAATAAGTGTACATCTAGTTTTT 58.067 33.333 0.00 0.00 0.00 1.94
160 161 8.308931 TCCGTGAATAAGTGTACATCTAGTTTT 58.691 33.333 0.00 0.00 0.00 2.43
161 162 7.758528 GTCCGTGAATAAGTGTACATCTAGTTT 59.241 37.037 0.00 0.00 0.00 2.66
162 163 7.256286 GTCCGTGAATAAGTGTACATCTAGTT 58.744 38.462 0.00 0.00 0.00 2.24
163 164 6.457934 CGTCCGTGAATAAGTGTACATCTAGT 60.458 42.308 0.00 0.00 0.00 2.57
164 165 5.907945 CGTCCGTGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 0.00 2.43
165 166 5.585844 TCGTCCGTGAATAAGTGTACATCTA 59.414 40.000 0.00 0.00 0.00 1.98
166 167 4.397103 TCGTCCGTGAATAAGTGTACATCT 59.603 41.667 0.00 0.00 0.00 2.90
167 168 4.665212 TCGTCCGTGAATAAGTGTACATC 58.335 43.478 0.00 0.00 0.00 3.06
168 169 4.707030 TCGTCCGTGAATAAGTGTACAT 57.293 40.909 0.00 0.00 0.00 2.29
169 170 4.216042 TCTTCGTCCGTGAATAAGTGTACA 59.784 41.667 0.00 0.00 0.00 2.90
170 171 4.726416 TCTTCGTCCGTGAATAAGTGTAC 58.274 43.478 0.00 0.00 0.00 2.90
171 172 4.696877 TCTCTTCGTCCGTGAATAAGTGTA 59.303 41.667 0.00 0.00 0.00 2.90
172 173 3.504906 TCTCTTCGTCCGTGAATAAGTGT 59.495 43.478 0.00 0.00 0.00 3.55
173 174 4.092771 TCTCTTCGTCCGTGAATAAGTG 57.907 45.455 0.00 0.00 0.00 3.16
174 175 3.757493 ACTCTCTTCGTCCGTGAATAAGT 59.243 43.478 0.00 0.00 0.00 2.24
175 176 4.358494 ACTCTCTTCGTCCGTGAATAAG 57.642 45.455 0.00 0.00 0.00 1.73
176 177 6.446781 AATACTCTCTTCGTCCGTGAATAA 57.553 37.500 0.00 0.00 0.00 1.40
177 178 7.741027 ATAATACTCTCTTCGTCCGTGAATA 57.259 36.000 0.00 0.00 0.00 1.75
178 179 4.985538 AATACTCTCTTCGTCCGTGAAT 57.014 40.909 0.00 0.00 0.00 2.57
179 180 7.741027 ATATAATACTCTCTTCGTCCGTGAA 57.259 36.000 0.00 0.00 0.00 3.18
180 181 7.741027 AATATAATACTCTCTTCGTCCGTGA 57.259 36.000 0.00 0.00 0.00 4.35
181 182 8.719648 ACTAATATAATACTCTCTTCGTCCGTG 58.280 37.037 0.00 0.00 0.00 4.94
182 183 8.845413 ACTAATATAATACTCTCTTCGTCCGT 57.155 34.615 0.00 0.00 0.00 4.69
218 219 3.721087 ATTGCTGGGCTAAACACTACT 57.279 42.857 0.00 0.00 0.00 2.57
222 223 2.817258 TGTGTATTGCTGGGCTAAACAC 59.183 45.455 11.66 11.66 36.36 3.32
230 231 5.163622 CCAATAGAAAGTGTGTATTGCTGGG 60.164 44.000 4.92 0.00 40.51 4.45
324 325 3.742369 TGTCGTTCGGAATTAAGGTGTTC 59.258 43.478 0.00 0.00 0.00 3.18
340 341 7.041916 TGTCAATAATCGTAAACCTTTGTCGTT 60.042 33.333 0.00 0.00 0.00 3.85
397 407 5.499004 ACTCCTTGGTTTGACTTAGCATA 57.501 39.130 0.00 0.00 0.00 3.14
457 486 4.217983 CCCCTATACGTCTGAATACTCACC 59.782 50.000 0.00 0.00 0.00 4.02
479 508 0.322975 ATGCTACGGATGATGCTCCC 59.677 55.000 0.00 0.00 31.04 4.30
484 513 2.332104 CGGAAGATGCTACGGATGATG 58.668 52.381 0.00 0.00 0.00 3.07
515 547 2.802816 GCATAGAATGGACTGTTAGGCG 59.197 50.000 0.00 0.00 0.00 5.52
577 609 8.636843 GTGTCAAATTCTAGTGTTTCGTACTAG 58.363 37.037 5.96 5.96 45.68 2.57
636 671 5.240183 GCATGGTCGAATAGTACTAGTGGTA 59.760 44.000 7.74 0.00 0.00 3.25
637 672 4.037684 GCATGGTCGAATAGTACTAGTGGT 59.962 45.833 7.74 0.00 0.00 4.16
638 673 4.547532 GCATGGTCGAATAGTACTAGTGG 58.452 47.826 7.74 6.81 0.00 4.00
639 674 4.037565 TGGCATGGTCGAATAGTACTAGTG 59.962 45.833 7.74 0.17 0.00 2.74
640 675 4.037684 GTGGCATGGTCGAATAGTACTAGT 59.962 45.833 8.85 5.54 0.00 2.57
641 676 4.278669 AGTGGCATGGTCGAATAGTACTAG 59.721 45.833 8.85 0.00 0.00 2.57
644 679 3.123804 CAGTGGCATGGTCGAATAGTAC 58.876 50.000 0.00 0.00 0.00 2.73
654 689 4.033709 ACTAGAATAGACAGTGGCATGGT 58.966 43.478 0.00 0.00 42.77 3.55
672 725 5.466728 ACACAACAGTTATCAGCAACACTAG 59.533 40.000 0.00 0.00 0.00 2.57
732 1607 5.956642 ACACAAATTAAAGTTTCACGTGGT 58.043 33.333 17.00 0.00 0.00 4.16
794 1669 1.135333 GGGGAAACAAAGCGTTGACAA 59.865 47.619 19.51 0.00 38.07 3.18
806 1681 1.072505 GAGTTCGCCTGGGGAAACA 59.927 57.895 25.43 3.63 36.32 2.83
814 1689 1.557443 GAACCACGTGAGTTCGCCTG 61.557 60.000 24.32 7.43 46.40 4.85
859 1734 5.450412 GCAGAAGATGGTTGAGTTGACAAAA 60.450 40.000 0.00 0.00 0.00 2.44
870 1745 1.005340 GAGCGAGCAGAAGATGGTTG 58.995 55.000 0.00 0.00 40.53 3.77
959 1839 1.904990 GCTTCCTCCCTGTCCCTGTC 61.905 65.000 0.00 0.00 0.00 3.51
960 1840 1.920835 GCTTCCTCCCTGTCCCTGT 60.921 63.158 0.00 0.00 0.00 4.00
961 1841 2.993853 GCTTCCTCCCTGTCCCTG 59.006 66.667 0.00 0.00 0.00 4.45
962 1842 2.685380 CGCTTCCTCCCTGTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
963 1843 3.787001 CCGCTTCCTCCCTGTCCC 61.787 72.222 0.00 0.00 0.00 4.46
964 1844 4.475135 GCCGCTTCCTCCCTGTCC 62.475 72.222 0.00 0.00 0.00 4.02
965 1845 3.378399 GAGCCGCTTCCTCCCTGTC 62.378 68.421 0.00 0.00 0.00 3.51
981 1861 3.694072 ACATCTCCTCTTCGTCTTCTGAG 59.306 47.826 0.00 0.00 0.00 3.35
1142 2025 0.320247 AGCAGCACCGAGTCTGAAAG 60.320 55.000 0.00 0.00 32.26 2.62
1153 2036 1.518056 TAAACAGCAGCAGCAGCACC 61.518 55.000 12.92 0.00 45.49 5.01
1154 2037 0.311790 TTAAACAGCAGCAGCAGCAC 59.688 50.000 12.92 0.00 45.49 4.40
1155 2038 1.068125 CATTAAACAGCAGCAGCAGCA 60.068 47.619 12.92 0.00 45.49 4.41
1157 2040 1.625616 GCATTAAACAGCAGCAGCAG 58.374 50.000 3.17 0.00 45.49 4.24
1169 2052 2.485903 AGTGTTGTCGGACGCATTAAA 58.514 42.857 3.34 0.00 32.56 1.52
1173 2056 1.002900 CAAAAGTGTTGTCGGACGCAT 60.003 47.619 3.34 0.00 32.56 4.73
1349 2232 3.027170 CTGCGCGTCGATTGGCTTT 62.027 57.895 8.43 0.00 0.00 3.51
1442 2325 1.750780 GCTTGCCTGGTAGAAGCCC 60.751 63.158 13.20 0.00 36.84 5.19
1461 2344 0.178953 ATCAGCAGTTTGGGTGGCTT 60.179 50.000 0.00 0.00 36.92 4.35
1462 2345 0.896940 CATCAGCAGTTTGGGTGGCT 60.897 55.000 0.00 0.00 36.92 4.75
1463 2346 0.895100 TCATCAGCAGTTTGGGTGGC 60.895 55.000 0.00 0.00 36.92 5.01
1464 2347 1.843368 ATCATCAGCAGTTTGGGTGG 58.157 50.000 0.00 0.00 36.92 4.61
1499 2387 6.075046 GCAAATCCACGAGTAAGAAAACAAAC 60.075 38.462 0.00 0.00 0.00 2.93
1529 2417 2.089980 GGTCATCTGCAGCAAGACAAT 58.910 47.619 24.41 5.84 0.00 2.71
1540 2428 0.107508 TAGCCAGCTTGGTCATCTGC 60.108 55.000 0.00 0.00 40.46 4.26
1567 2455 2.079925 GTCTCCAAGAGCATGGTGAAC 58.920 52.381 0.00 0.00 42.73 3.18
1617 2505 5.609423 CCTAATGTGAGAAGGAATCTGAGG 58.391 45.833 0.00 0.00 38.96 3.86
1633 2521 7.577303 TCAATATTCAGGAAAGAGCCTAATGT 58.423 34.615 0.00 0.00 36.22 2.71
1643 2531 5.801350 TCAGCGTTCAATATTCAGGAAAG 57.199 39.130 0.00 0.00 0.00 2.62
1652 2540 7.495606 TGTTACAAGATGATCAGCGTTCAATAT 59.504 33.333 5.12 0.00 0.00 1.28
1653 2541 6.816140 TGTTACAAGATGATCAGCGTTCAATA 59.184 34.615 5.12 0.00 0.00 1.90
1654 2542 5.643348 TGTTACAAGATGATCAGCGTTCAAT 59.357 36.000 5.12 0.00 0.00 2.57
1655 2543 4.994217 TGTTACAAGATGATCAGCGTTCAA 59.006 37.500 5.12 0.00 0.00 2.69
1656 2544 4.565022 TGTTACAAGATGATCAGCGTTCA 58.435 39.130 5.12 0.00 0.00 3.18
1657 2545 5.120830 ACTTGTTACAAGATGATCAGCGTTC 59.879 40.000 28.94 0.00 0.00 3.95
1658 2546 4.997395 ACTTGTTACAAGATGATCAGCGTT 59.003 37.500 28.94 1.65 0.00 4.84
1659 2547 4.569943 ACTTGTTACAAGATGATCAGCGT 58.430 39.130 28.94 0.00 0.00 5.07
1660 2548 5.120674 TGAACTTGTTACAAGATGATCAGCG 59.879 40.000 28.94 2.38 0.00 5.18
1661 2549 6.486253 TGAACTTGTTACAAGATGATCAGC 57.514 37.500 28.94 1.78 0.00 4.26
1662 2550 6.402983 GGCTGAACTTGTTACAAGATGATCAG 60.403 42.308 28.94 28.36 35.02 2.90
1663 2551 5.412594 GGCTGAACTTGTTACAAGATGATCA 59.587 40.000 28.94 22.35 0.00 2.92
1664 2552 5.412594 TGGCTGAACTTGTTACAAGATGATC 59.587 40.000 28.94 19.73 0.00 2.92
1665 2553 5.316167 TGGCTGAACTTGTTACAAGATGAT 58.684 37.500 28.94 13.15 0.00 2.45
1676 2564 2.490903 GCATGAGAATGGCTGAACTTGT 59.509 45.455 0.00 0.00 0.00 3.16
1688 2576 6.040166 GGTTAATGATTGTGGAGCATGAGAAT 59.960 38.462 0.00 0.00 33.92 2.40
1807 2695 0.741927 TGGTGAGCACTGCGATGATG 60.742 55.000 0.16 0.00 0.00 3.07
1925 2814 4.218200 TGAACACAAATATTCAGGGTGCAG 59.782 41.667 0.85 0.00 32.89 4.41
1962 2851 2.733956 TGGTCAGCTTTGTTCAAGGTT 58.266 42.857 0.00 0.00 41.53 3.50
2154 3043 1.081376 GTTCTTGCTGCTGCTGCTG 60.081 57.895 27.67 20.66 40.48 4.41
2155 3044 1.228184 AGTTCTTGCTGCTGCTGCT 60.228 52.632 27.67 7.82 40.48 4.24
2230 3119 2.361189 TCAGGATGAACACCTGCGA 58.639 52.632 8.84 0.00 45.97 5.10
2627 3516 2.517402 TGCCACGGCGAGGTTTTT 60.517 55.556 23.88 0.00 45.51 1.94
2657 3546 0.776451 CGTCGTCAAAGTTCTCCACG 59.224 55.000 0.00 0.00 0.00 4.94
2765 3654 3.638627 CCAAAGGGGAAAGAATAGATGCC 59.361 47.826 0.00 0.00 40.01 4.40
2887 3776 0.886490 AGGAGAAGTTGGCACTTGCG 60.886 55.000 6.99 0.00 43.79 4.85
2919 3808 0.836606 TTTCTGCGATATCCCTGCCA 59.163 50.000 0.00 0.00 0.00 4.92
2973 3862 9.162793 CGAGAGAATTGTCATAATAAATTGCAC 57.837 33.333 5.28 0.00 0.00 4.57
3054 3944 6.332735 TCCTATCAATGTATCGAGGACAAG 57.667 41.667 7.00 4.04 0.00 3.16
3055 3945 6.549736 TCTTCCTATCAATGTATCGAGGACAA 59.450 38.462 7.00 0.00 32.86 3.18
3057 3947 6.576662 TCTTCCTATCAATGTATCGAGGAC 57.423 41.667 0.00 0.00 32.86 3.85
3082 3974 8.063200 TCTAAGCTTGTGCAACTATAACTCTA 57.937 34.615 9.86 0.00 42.74 2.43
3083 3975 6.936279 TCTAAGCTTGTGCAACTATAACTCT 58.064 36.000 9.86 0.00 42.74 3.24
3084 3976 6.237969 GCTCTAAGCTTGTGCAACTATAACTC 60.238 42.308 9.86 0.00 42.74 3.01
3085 3977 5.582665 GCTCTAAGCTTGTGCAACTATAACT 59.417 40.000 9.86 0.00 42.74 2.24
3086 3978 5.351465 TGCTCTAAGCTTGTGCAACTATAAC 59.649 40.000 9.86 0.00 42.97 1.89
3087 3979 5.487433 TGCTCTAAGCTTGTGCAACTATAA 58.513 37.500 9.86 0.00 42.97 0.98
3088 3980 5.084818 TGCTCTAAGCTTGTGCAACTATA 57.915 39.130 9.86 0.00 42.97 1.31
3089 3981 3.942829 TGCTCTAAGCTTGTGCAACTAT 58.057 40.909 9.86 0.00 42.97 2.12
3090 3982 3.401033 TGCTCTAAGCTTGTGCAACTA 57.599 42.857 9.86 0.00 42.97 2.24
3091 3983 2.260844 TGCTCTAAGCTTGTGCAACT 57.739 45.000 9.86 0.00 42.97 3.16
3092 3984 2.746362 AGATGCTCTAAGCTTGTGCAAC 59.254 45.455 20.71 18.51 42.97 4.17
3093 3985 3.005554 GAGATGCTCTAAGCTTGTGCAA 58.994 45.455 20.71 9.45 42.97 4.08
3094 3986 2.625737 GAGATGCTCTAAGCTTGTGCA 58.374 47.619 19.66 19.66 42.97 4.57
3095 3987 1.939255 GGAGATGCTCTAAGCTTGTGC 59.061 52.381 9.86 10.90 42.97 4.57
3096 3988 3.196463 CTGGAGATGCTCTAAGCTTGTG 58.804 50.000 9.86 1.82 42.97 3.33
3097 3989 2.419851 GCTGGAGATGCTCTAAGCTTGT 60.420 50.000 9.86 0.00 42.97 3.16
3098 3990 2.211806 GCTGGAGATGCTCTAAGCTTG 58.788 52.381 9.86 0.00 42.97 4.01
3099 3991 1.140652 GGCTGGAGATGCTCTAAGCTT 59.859 52.381 3.48 3.48 42.97 3.74
3100 3992 0.758123 GGCTGGAGATGCTCTAAGCT 59.242 55.000 16.40 0.00 42.97 3.74
3101 3993 0.599728 CGGCTGGAGATGCTCTAAGC 60.600 60.000 11.59 11.59 42.82 3.09
3333 4269 0.603439 TTCGCCCCGTAGTTGGTTTC 60.603 55.000 0.00 0.00 0.00 2.78
3359 4298 2.049063 GACTTCGCCGTGCTCAGT 60.049 61.111 0.00 0.00 0.00 3.41
3386 4325 3.164011 GCCGACGACGACGACAAG 61.164 66.667 20.63 5.41 42.66 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.