Multiple sequence alignment - TraesCS1D01G154800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G154800 chr1D 100.000 6106 0 0 1 6106 216327611 216333716 0.000000e+00 11276.0
1 TraesCS1D01G154800 chr1D 90.678 118 11 0 1275 1392 70455700 70455817 2.280000e-34 158.0
2 TraesCS1D01G154800 chr1D 90.385 52 4 1 2527 2578 298357790 298357740 3.950000e-07 67.6
3 TraesCS1D01G154800 chr1A 92.991 3410 173 18 1385 4737 276968268 276971668 0.000000e+00 4913.0
4 TraesCS1D01G154800 chr1A 96.593 1086 30 4 4728 5808 276971687 276972770 0.000000e+00 1794.0
5 TraesCS1D01G154800 chr1A 92.586 607 33 5 678 1276 276967673 276968275 0.000000e+00 861.0
6 TraesCS1D01G154800 chr1A 89.735 302 31 0 5805 6106 252023310 252023009 2.670000e-103 387.0
7 TraesCS1D01G154800 chr1A 91.667 120 8 2 1275 1392 463825331 463825450 1.360000e-36 165.0
8 TraesCS1D01G154800 chr1A 90.110 91 9 0 2257 2347 204832960 204832870 1.080000e-22 119.0
9 TraesCS1D01G154800 chr1A 97.674 43 1 0 5163 5205 91500306 91500348 2.360000e-09 75.0
10 TraesCS1D01G154800 chr1B 89.214 2837 145 46 1391 4165 309377444 309380181 0.000000e+00 3395.0
11 TraesCS1D01G154800 chr1B 93.945 1602 61 9 4237 5808 309386692 309388287 0.000000e+00 2388.0
12 TraesCS1D01G154800 chr1B 94.379 676 27 5 1 665 629640274 629640949 0.000000e+00 1027.0
13 TraesCS1D01G154800 chr1B 87.660 624 39 8 679 1278 309376835 309377444 0.000000e+00 691.0
14 TraesCS1D01G154800 chr1B 94.118 306 8 5 1 296 51600053 51600358 2.010000e-124 457.0
15 TraesCS1D01G154800 chr1B 94.382 89 5 0 4152 4240 309385837 309385925 2.970000e-28 137.0
16 TraesCS1D01G154800 chr1B 90.385 52 4 1 5154 5205 156597654 156597604 3.950000e-07 67.6
17 TraesCS1D01G154800 chrUn 94.714 681 25 6 1 670 47579048 47578368 0.000000e+00 1048.0
18 TraesCS1D01G154800 chrUn 93.759 689 32 2 1 678 109549854 109549166 0.000000e+00 1024.0
19 TraesCS1D01G154800 chr5B 94.567 681 26 4 1 670 82448547 82447867 0.000000e+00 1042.0
20 TraesCS1D01G154800 chr5B 93.151 219 10 1 2636 2854 22361512 22361299 3.550000e-82 316.0
21 TraesCS1D01G154800 chr5B 86.486 74 9 1 2350 2422 622971003 622971076 5.070000e-11 80.5
22 TraesCS1D01G154800 chr5B 85.333 75 9 2 2350 2422 633310156 633310082 6.560000e-10 76.8
23 TraesCS1D01G154800 chr3D 94.273 681 27 5 1 670 351289790 351289111 0.000000e+00 1031.0
24 TraesCS1D01G154800 chr3D 92.042 289 22 1 5809 6096 437447456 437447744 7.370000e-109 405.0
25 TraesCS1D01G154800 chr3D 93.220 118 6 2 1275 1392 537915012 537914897 8.140000e-39 172.0
26 TraesCS1D01G154800 chr3D 90.411 73 7 0 2348 2420 264698288 264698216 5.040000e-16 97.1
27 TraesCS1D01G154800 chr3D 93.617 47 1 2 5158 5204 250931531 250931487 1.100000e-07 69.4
28 TraesCS1D01G154800 chr6B 93.750 688 32 2 2 678 459201138 459201825 0.000000e+00 1022.0
29 TraesCS1D01G154800 chr6B 93.198 691 36 4 1 680 138671922 138672612 0.000000e+00 1005.0
30 TraesCS1D01G154800 chr6B 92.308 52 2 2 5147 5198 76154416 76154465 8.490000e-09 73.1
31 TraesCS1D01G154800 chr2D 93.750 688 32 2 2 678 499158092 499157405 0.000000e+00 1022.0
32 TraesCS1D01G154800 chr2D 90.997 311 25 3 5799 6106 400569177 400569487 3.400000e-112 416.0
33 TraesCS1D01G154800 chr2D 84.971 173 13 5 2257 2416 147232646 147232818 4.900000e-36 163.0
34 TraesCS1D01G154800 chr2D 92.647 68 5 0 2346 2413 593800389 593800456 1.400000e-16 99.0
35 TraesCS1D01G154800 chr4B 93.979 681 30 4 1 670 630002611 630003291 0.000000e+00 1020.0
36 TraesCS1D01G154800 chr4B 93.695 682 31 5 1 670 107653180 107653861 0.000000e+00 1011.0
37 TraesCS1D01G154800 chr4B 90.323 124 12 0 1273 1396 167349963 167350086 4.900000e-36 163.0
38 TraesCS1D01G154800 chr4B 94.118 51 2 1 5148 5198 483906444 483906395 6.560000e-10 76.8
39 TraesCS1D01G154800 chr6D 93.787 676 31 2 3 667 295108337 295109012 0.000000e+00 1005.0
40 TraesCS1D01G154800 chr6D 92.953 298 21 0 5809 6106 357451782 357452079 9.400000e-118 435.0
41 TraesCS1D01G154800 chr6D 91.736 121 7 1 1273 1393 87598712 87598595 1.360000e-36 165.0
42 TraesCS1D01G154800 chr6D 95.161 62 2 1 2292 2352 130181271 130181332 5.040000e-16 97.1
43 TraesCS1D01G154800 chr4A 93.392 681 34 5 1 670 47303869 47303189 0.000000e+00 998.0
44 TraesCS1D01G154800 chr4A 90.323 124 12 0 1273 1396 467246483 467246606 4.900000e-36 163.0
45 TraesCS1D01G154800 chr4A 92.308 52 3 1 5147 5198 99009765 99009815 8.490000e-09 73.1
46 TraesCS1D01G154800 chr3B 93.764 449 17 4 1 438 820181208 820181656 0.000000e+00 664.0
47 TraesCS1D01G154800 chr3B 88.475 295 31 3 5804 6096 660236325 660236618 2.710000e-93 353.0
48 TraesCS1D01G154800 chr3B 89.041 73 8 0 2348 2420 335838284 335838212 2.340000e-14 91.6
49 TraesCS1D01G154800 chr2B 92.537 402 19 4 1 391 786770124 786769723 3.190000e-157 566.0
50 TraesCS1D01G154800 chr7D 91.139 316 25 3 5793 6106 337553081 337552767 5.660000e-115 425.0
51 TraesCS1D01G154800 chr7D 81.421 183 20 7 2256 2424 387912942 387912760 2.970000e-28 137.0
52 TraesCS1D01G154800 chr4D 90.572 297 26 2 5803 6098 509563451 509563746 5.740000e-105 392.0
53 TraesCS1D01G154800 chr4D 90.323 124 12 0 1273 1396 109275091 109274968 4.900000e-36 163.0
54 TraesCS1D01G154800 chr4D 94.118 51 2 1 5148 5198 394190404 394190355 6.560000e-10 76.8
55 TraesCS1D01G154800 chr2A 88.852 305 31 3 5803 6106 652912616 652912314 7.470000e-99 372.0
56 TraesCS1D01G154800 chr2A 83.051 177 13 3 2257 2416 155591082 155590906 1.770000e-30 145.0
57 TraesCS1D01G154800 chr7B 88.660 291 29 3 5808 6098 43817277 43816991 9.740000e-93 351.0
58 TraesCS1D01G154800 chr7B 89.937 159 14 2 2259 2416 460596727 460596570 2.890000e-48 204.0
59 TraesCS1D01G154800 chr7B 89.516 124 10 3 1275 1397 627984712 627984591 2.950000e-33 154.0
60 TraesCS1D01G154800 chr7B 82.486 177 17 7 2256 2418 382607710 382607534 6.380000e-30 143.0
61 TraesCS1D01G154800 chr7A 88.679 159 16 2 2259 2416 493705836 493705679 6.250000e-45 193.0
62 TraesCS1D01G154800 chr7A 91.597 119 10 0 1274 1392 398917345 398917227 1.360000e-36 165.0
63 TraesCS1D01G154800 chr7A 80.000 180 19 7 2256 2418 438141916 438141737 3.870000e-22 117.0
64 TraesCS1D01G154800 chr5A 80.892 157 19 4 2263 2419 458198205 458198350 5.000000e-21 113.0
65 TraesCS1D01G154800 chr6A 81.618 136 11 8 2292 2413 169207948 169208083 3.890000e-17 100.0
66 TraesCS1D01G154800 chr5D 86.486 74 9 1 2350 2422 501344788 501344861 5.070000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G154800 chr1D 216327611 216333716 6105 False 11276.000000 11276 100.000000 1 6106 1 chr1D.!!$F2 6105
1 TraesCS1D01G154800 chr1A 276967673 276972770 5097 False 2522.666667 4913 94.056667 678 5808 3 chr1A.!!$F3 5130
2 TraesCS1D01G154800 chr1B 309376835 309380181 3346 False 2043.000000 3395 88.437000 679 4165 2 chr1B.!!$F3 3486
3 TraesCS1D01G154800 chr1B 309385837 309388287 2450 False 1262.500000 2388 94.163500 4152 5808 2 chr1B.!!$F4 1656
4 TraesCS1D01G154800 chr1B 629640274 629640949 675 False 1027.000000 1027 94.379000 1 665 1 chr1B.!!$F2 664
5 TraesCS1D01G154800 chrUn 47578368 47579048 680 True 1048.000000 1048 94.714000 1 670 1 chrUn.!!$R1 669
6 TraesCS1D01G154800 chrUn 109549166 109549854 688 True 1024.000000 1024 93.759000 1 678 1 chrUn.!!$R2 677
7 TraesCS1D01G154800 chr5B 82447867 82448547 680 True 1042.000000 1042 94.567000 1 670 1 chr5B.!!$R2 669
8 TraesCS1D01G154800 chr3D 351289111 351289790 679 True 1031.000000 1031 94.273000 1 670 1 chr3D.!!$R3 669
9 TraesCS1D01G154800 chr6B 459201138 459201825 687 False 1022.000000 1022 93.750000 2 678 1 chr6B.!!$F3 676
10 TraesCS1D01G154800 chr6B 138671922 138672612 690 False 1005.000000 1005 93.198000 1 680 1 chr6B.!!$F2 679
11 TraesCS1D01G154800 chr2D 499157405 499158092 687 True 1022.000000 1022 93.750000 2 678 1 chr2D.!!$R1 676
12 TraesCS1D01G154800 chr4B 630002611 630003291 680 False 1020.000000 1020 93.979000 1 670 1 chr4B.!!$F3 669
13 TraesCS1D01G154800 chr4B 107653180 107653861 681 False 1011.000000 1011 93.695000 1 670 1 chr4B.!!$F1 669
14 TraesCS1D01G154800 chr6D 295108337 295109012 675 False 1005.000000 1005 93.787000 3 667 1 chr6D.!!$F2 664
15 TraesCS1D01G154800 chr4A 47303189 47303869 680 True 998.000000 998 93.392000 1 670 1 chr4A.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 498 0.034059 AGCGTTGAGTGTCTCCAAGG 59.966 55.000 0.0 0.0 0.00 3.61 F
1161 1206 0.041833 CAGGACTCAGGAAGGGGAGA 59.958 60.000 0.0 0.0 35.17 3.71 F
2587 2693 0.464036 CCCAGCACAGCCGAAGTATA 59.536 55.000 0.0 0.0 0.00 1.47 F
2686 2802 1.265095 CGCCACTGGTTATGATGATGC 59.735 52.381 0.0 0.0 0.00 3.91 F
2837 2953 1.338107 TCACACCAGATCCACGACTT 58.662 50.000 0.0 0.0 0.00 3.01 F
4682 5584 0.036022 ACCTGCCAAACTCTGCTCTC 59.964 55.000 0.0 0.0 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1414 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.0 0.0 0.00 2.24 R
2686 2802 0.752658 TACCAGGATGCGAGTGATGG 59.247 55.000 0.0 0.0 31.97 3.51 R
4037 4162 0.106335 TGCAACCCAAATGCCAACAG 59.894 50.000 0.0 0.0 43.16 3.16 R
4048 4173 1.411977 CACACCAAAAGATGCAACCCA 59.588 47.619 0.0 0.0 0.00 4.51 R
4795 5725 2.158871 TGGCCCTACGGATATTGTTGAC 60.159 50.000 0.0 0.0 0.00 3.18 R
5839 6778 0.030297 AGGGATGGATGAGTGGAGCT 60.030 55.000 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.676129 TTTGGTAAAGGATAGGAATCTATCTCT 57.324 33.333 11.64 6.16 46.84 3.10
35 36 5.914452 AGGATAGGAATCTATCTCTGCCTT 58.086 41.667 11.64 0.00 46.84 4.35
347 358 1.260538 TTCGAGCAGCCATCTCAGGT 61.261 55.000 0.00 0.00 0.00 4.00
358 370 3.067320 GCCATCTCAGGTCTTTAATTGGC 59.933 47.826 0.00 0.00 40.16 4.52
430 443 5.415389 GGCCTTGGTTTTTGCAAATGATAAT 59.585 36.000 13.65 0.00 0.00 1.28
485 498 0.034059 AGCGTTGAGTGTCTCCAAGG 59.966 55.000 0.00 0.00 0.00 3.61
721 734 2.616842 GGAAGCACGACTCAAGGAAAAA 59.383 45.455 0.00 0.00 0.00 1.94
794 807 3.793492 GTGCAGAAAAAGAAACTGTGCTC 59.207 43.478 0.00 0.00 34.60 4.26
795 808 3.696051 TGCAGAAAAAGAAACTGTGCTCT 59.304 39.130 0.00 0.00 34.60 4.09
796 809 4.158394 TGCAGAAAAAGAAACTGTGCTCTT 59.842 37.500 0.00 0.79 34.60 2.85
804 817 2.048222 CTGTGCTCTTCCGCGGAA 60.048 61.111 36.44 36.44 0.00 4.30
837 858 1.762957 CCGGAGCTTTCATTCCTCCTA 59.237 52.381 0.00 0.00 42.34 2.94
889 910 0.249120 TCCAGACGCGAATTGGTGAT 59.751 50.000 15.93 0.00 33.65 3.06
1021 1059 1.001269 GTAAAGCGCCCCTTCCCTT 60.001 57.895 2.29 0.00 31.99 3.95
1051 1096 2.531206 CCGACCGATTCTTTCTCTGTC 58.469 52.381 0.00 0.00 0.00 3.51
1059 1104 1.040646 TCTTTCTCTGTCCACGCTGT 58.959 50.000 0.00 0.00 0.00 4.40
1068 1113 2.742372 CCACGCTGTGCACCTACC 60.742 66.667 15.69 0.00 31.34 3.18
1139 1184 3.003230 CCAATTGGGGCCGAGGTA 58.997 61.111 17.36 0.00 0.00 3.08
1158 1203 0.327000 ATCCAGGACTCAGGAAGGGG 60.327 60.000 0.00 0.00 37.48 4.79
1161 1206 0.041833 CAGGACTCAGGAAGGGGAGA 59.958 60.000 0.00 0.00 35.17 3.71
1174 1219 3.502051 AGGGGAGATTGTTAGTGGGTA 57.498 47.619 0.00 0.00 0.00 3.69
1180 1225 5.104485 GGGAGATTGTTAGTGGGTATGTCTT 60.104 44.000 0.00 0.00 0.00 3.01
1204 1249 3.968265 AGGATTGGTGGGTCTGTTTATG 58.032 45.455 0.00 0.00 0.00 1.90
1230 1275 1.374758 GAGGACGCTGGAACCACTG 60.375 63.158 0.00 0.00 0.00 3.66
1263 1308 3.723681 AGAAATGGATTGCTGGATAGGGA 59.276 43.478 0.00 0.00 0.00 4.20
1270 1315 3.582998 TTGCTGGATAGGGATTTCAGG 57.417 47.619 0.00 0.00 0.00 3.86
1271 1316 1.776667 TGCTGGATAGGGATTTCAGGG 59.223 52.381 0.00 0.00 0.00 4.45
1272 1317 2.057922 GCTGGATAGGGATTTCAGGGA 58.942 52.381 0.00 0.00 0.00 4.20
1273 1318 2.039613 GCTGGATAGGGATTTCAGGGAG 59.960 54.545 0.00 0.00 0.00 4.30
1274 1319 3.321950 CTGGATAGGGATTTCAGGGAGT 58.678 50.000 0.00 0.00 0.00 3.85
1275 1320 4.493618 CTGGATAGGGATTTCAGGGAGTA 58.506 47.826 0.00 0.00 0.00 2.59
1276 1321 4.232091 TGGATAGGGATTTCAGGGAGTAC 58.768 47.826 0.00 0.00 0.00 2.73
1277 1322 4.077982 TGGATAGGGATTTCAGGGAGTACT 60.078 45.833 0.00 0.00 0.00 2.73
1278 1323 4.528987 GGATAGGGATTTCAGGGAGTACTC 59.471 50.000 14.87 14.87 0.00 2.59
1290 1335 3.666345 GGAGTACTCCCTCTGTCCTAA 57.334 52.381 28.87 0.00 43.94 2.69
1291 1336 3.978610 GGAGTACTCCCTCTGTCCTAAA 58.021 50.000 28.87 0.00 43.94 1.85
1292 1337 4.548669 GGAGTACTCCCTCTGTCCTAAAT 58.451 47.826 28.87 0.00 43.94 1.40
1293 1338 4.963628 GGAGTACTCCCTCTGTCCTAAATT 59.036 45.833 28.87 0.00 43.94 1.82
1294 1339 6.134754 GGAGTACTCCCTCTGTCCTAAATTA 58.865 44.000 28.87 0.00 43.94 1.40
1295 1340 6.040729 GGAGTACTCCCTCTGTCCTAAATTAC 59.959 46.154 28.87 0.00 43.94 1.89
1296 1341 6.743788 AGTACTCCCTCTGTCCTAAATTACT 58.256 40.000 0.00 0.00 0.00 2.24
1297 1342 7.190501 AGTACTCCCTCTGTCCTAAATTACTT 58.809 38.462 0.00 0.00 0.00 2.24
1298 1343 6.301169 ACTCCCTCTGTCCTAAATTACTTG 57.699 41.667 0.00 0.00 0.00 3.16
1299 1344 5.785940 ACTCCCTCTGTCCTAAATTACTTGT 59.214 40.000 0.00 0.00 0.00 3.16
1300 1345 6.070710 ACTCCCTCTGTCCTAAATTACTTGTC 60.071 42.308 0.00 0.00 0.00 3.18
1301 1346 5.105473 TCCCTCTGTCCTAAATTACTTGTCG 60.105 44.000 0.00 0.00 0.00 4.35
1302 1347 4.567159 CCTCTGTCCTAAATTACTTGTCGC 59.433 45.833 0.00 0.00 0.00 5.19
1303 1348 5.142061 TCTGTCCTAAATTACTTGTCGCA 57.858 39.130 0.00 0.00 0.00 5.10
1304 1349 5.168569 TCTGTCCTAAATTACTTGTCGCAG 58.831 41.667 0.00 0.00 0.00 5.18
1305 1350 5.047590 TCTGTCCTAAATTACTTGTCGCAGA 60.048 40.000 0.00 0.00 0.00 4.26
1306 1351 5.543714 TGTCCTAAATTACTTGTCGCAGAA 58.456 37.500 0.00 0.00 39.69 3.02
1307 1352 5.992829 TGTCCTAAATTACTTGTCGCAGAAA 59.007 36.000 0.00 0.00 39.69 2.52
1308 1353 6.653320 TGTCCTAAATTACTTGTCGCAGAAAT 59.347 34.615 0.00 0.00 39.69 2.17
1309 1354 6.961554 GTCCTAAATTACTTGTCGCAGAAATG 59.038 38.462 0.00 0.00 39.69 2.32
1310 1355 6.093495 TCCTAAATTACTTGTCGCAGAAATGG 59.907 38.462 0.00 0.00 39.69 3.16
1311 1356 5.957842 AAATTACTTGTCGCAGAAATGGA 57.042 34.783 0.00 0.00 39.69 3.41
1312 1357 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
1313 1358 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1314 1359 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1315 1360 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1316 1361 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1317 1362 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1318 1363 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1319 1364 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1320 1365 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1321 1366 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1322 1367 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
1323 1368 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
1324 1369 4.387256 GCAGAAATGGATGTATCTAGACGC 59.613 45.833 0.00 0.00 0.00 5.19
1325 1370 5.532557 CAGAAATGGATGTATCTAGACGCA 58.467 41.667 0.00 0.00 0.00 5.24
1326 1371 6.162079 CAGAAATGGATGTATCTAGACGCAT 58.838 40.000 9.78 9.78 0.00 4.73
1327 1372 6.648310 CAGAAATGGATGTATCTAGACGCATT 59.352 38.462 10.93 0.00 0.00 3.56
1328 1373 7.172190 CAGAAATGGATGTATCTAGACGCATTT 59.828 37.037 10.93 0.00 0.00 2.32
1329 1374 7.716998 AGAAATGGATGTATCTAGACGCATTTT 59.283 33.333 10.93 8.42 0.00 1.82
1330 1375 7.807977 AATGGATGTATCTAGACGCATTTTT 57.192 32.000 10.93 4.84 0.00 1.94
1331 1376 8.902540 AATGGATGTATCTAGACGCATTTTTA 57.097 30.769 10.93 1.96 0.00 1.52
1332 1377 7.946655 TGGATGTATCTAGACGCATTTTTAG 57.053 36.000 10.93 0.00 0.00 1.85
1333 1378 7.497595 TGGATGTATCTAGACGCATTTTTAGT 58.502 34.615 10.93 0.00 0.00 2.24
1334 1379 7.985184 TGGATGTATCTAGACGCATTTTTAGTT 59.015 33.333 10.93 0.00 0.00 2.24
1335 1380 8.488764 GGATGTATCTAGACGCATTTTTAGTTC 58.511 37.037 10.93 0.00 0.00 3.01
1336 1381 9.250624 GATGTATCTAGACGCATTTTTAGTTCT 57.749 33.333 10.93 0.00 0.00 3.01
1338 1383 9.731819 TGTATCTAGACGCATTTTTAGTTCTAG 57.268 33.333 0.00 0.00 0.00 2.43
1339 1384 9.947669 GTATCTAGACGCATTTTTAGTTCTAGA 57.052 33.333 8.23 8.23 39.10 2.43
1342 1387 9.947669 TCTAGACGCATTTTTAGTTCTAGATAC 57.052 33.333 0.00 0.00 32.64 2.24
1343 1388 9.731819 CTAGACGCATTTTTAGTTCTAGATACA 57.268 33.333 0.00 0.00 0.00 2.29
1345 1390 9.601217 AGACGCATTTTTAGTTCTAGATACATT 57.399 29.630 0.00 0.00 0.00 2.71
1346 1391 9.851043 GACGCATTTTTAGTTCTAGATACATTC 57.149 33.333 0.00 0.00 0.00 2.67
1347 1392 9.378551 ACGCATTTTTAGTTCTAGATACATTCA 57.621 29.630 0.00 0.00 0.00 2.57
1367 1412 9.643693 ACATTCATTTCTATCCATTTTTGTGAC 57.356 29.630 0.00 0.00 0.00 3.67
1368 1413 9.642327 CATTCATTTCTATCCATTTTTGTGACA 57.358 29.630 0.00 0.00 0.00 3.58
1370 1415 9.695526 TTCATTTCTATCCATTTTTGTGACAAG 57.304 29.630 0.00 0.00 0.00 3.16
1371 1416 8.859090 TCATTTCTATCCATTTTTGTGACAAGT 58.141 29.630 0.00 0.00 0.00 3.16
1377 1422 9.277565 CTATCCATTTTTGTGACAAGTAATTCG 57.722 33.333 0.00 0.00 0.00 3.34
1378 1423 6.442952 TCCATTTTTGTGACAAGTAATTCGG 58.557 36.000 0.00 2.59 0.00 4.30
1379 1424 5.633182 CCATTTTTGTGACAAGTAATTCGGG 59.367 40.000 0.00 0.00 0.00 5.14
1380 1425 6.442952 CATTTTTGTGACAAGTAATTCGGGA 58.557 36.000 0.00 0.00 0.00 5.14
1381 1426 5.427036 TTTTGTGACAAGTAATTCGGGAC 57.573 39.130 0.00 0.00 0.00 4.46
1435 1491 2.635915 TCTTTACAACCACGGATGACCT 59.364 45.455 0.00 0.00 0.00 3.85
1470 1526 2.092646 CCATGGACGGGGACAGATTTTA 60.093 50.000 5.56 0.00 0.00 1.52
1653 1710 2.481854 GATGCACACAGCCATCTCTAG 58.518 52.381 0.00 0.00 44.83 2.43
1713 1770 1.549203 ATAGCAAGGCCCAAACACAG 58.451 50.000 0.00 0.00 0.00 3.66
1759 1816 8.727910 CATCACTCTACGCATAACCTATTACTA 58.272 37.037 0.00 0.00 0.00 1.82
1783 1840 4.482990 ACCTCAATCCAAACCAGTTGAAT 58.517 39.130 0.00 0.00 39.87 2.57
1785 1842 4.281688 CCTCAATCCAAACCAGTTGAATGT 59.718 41.667 0.00 0.00 39.87 2.71
1816 1873 7.628769 TGCTAATATCTCTCAACATTTGCAA 57.371 32.000 0.00 0.00 36.61 4.08
1870 1951 2.750814 TGGAGAGAGCACCACATATGA 58.249 47.619 10.38 0.00 29.24 2.15
1871 1952 3.311990 TGGAGAGAGCACCACATATGAT 58.688 45.455 10.38 0.00 29.24 2.45
1872 1953 3.070590 TGGAGAGAGCACCACATATGATG 59.929 47.826 10.38 5.91 29.24 3.07
1877 1958 5.057843 AGAGCACCACATATGATGGATTT 57.942 39.130 23.07 11.98 39.87 2.17
1894 1975 4.957296 GGATTTATCCTGTAGCTCGGAAA 58.043 43.478 0.00 0.00 43.73 3.13
1899 1980 9.220767 GATTTATCCTGTAGCTCGGAAAATAAT 57.779 33.333 0.00 0.00 32.12 1.28
1915 1996 9.097257 CGGAAAATAATCTGCAAATATTTTGGT 57.903 29.630 19.99 5.35 38.60 3.67
1923 2004 9.995003 AATCTGCAAATATTTTGGTAGTTTTGA 57.005 25.926 0.00 0.00 0.00 2.69
1951 2032 9.729023 CTGTTAAAGACACAAATCATTACACAA 57.271 29.630 0.00 0.00 33.82 3.33
1966 2047 1.347378 ACACAATCCCAAATTGCCCAC 59.653 47.619 0.00 0.00 32.55 4.61
2035 2116 2.330216 ACACTGGCCAACTAGTCTCTT 58.670 47.619 7.01 0.00 0.00 2.85
2044 2125 6.775629 TGGCCAACTAGTCTCTTAACAAATTT 59.224 34.615 0.61 0.00 0.00 1.82
2051 2132 9.449719 ACTAGTCTCTTAACAAATTTGGTATGG 57.550 33.333 22.20 15.74 29.11 2.74
2069 2150 4.634012 ATGGTAGTAGGCACAGACAAAA 57.366 40.909 0.00 0.00 0.00 2.44
2073 2154 2.851195 AGTAGGCACAGACAAAACAGG 58.149 47.619 0.00 0.00 0.00 4.00
2236 2317 8.447833 CAACTATTATGAGAAACTGCCGTTTTA 58.552 33.333 7.71 0.00 43.09 1.52
2355 2450 2.942376 ACTGATTTATCGGCAATTCGCA 59.058 40.909 0.00 0.00 45.17 5.10
2455 2550 7.504574 TCTCATCTATTTTCATGATGTTGGCAT 59.495 33.333 0.00 0.00 38.78 4.40
2531 2626 4.416513 ACCCAATGATGTTATGATCAGGGA 59.583 41.667 14.40 0.00 38.98 4.20
2553 2648 1.689258 GGAGCTATGTTGGGGCCAAAT 60.689 52.381 4.39 0.00 37.70 2.32
2587 2693 0.464036 CCCAGCACAGCCGAAGTATA 59.536 55.000 0.00 0.00 0.00 1.47
2622 2728 2.863704 GCCAGGAAAACAAGTGATGTGC 60.864 50.000 0.00 0.00 42.99 4.57
2623 2729 2.361757 CCAGGAAAACAAGTGATGTGCA 59.638 45.455 0.00 0.00 42.99 4.57
2686 2802 1.265095 CGCCACTGGTTATGATGATGC 59.735 52.381 0.00 0.00 0.00 3.91
2799 2915 4.750098 GTCGAGGTCAACAATTTCTCAGAA 59.250 41.667 0.00 0.00 0.00 3.02
2804 2920 7.095229 CGAGGTCAACAATTTCTCAGAAATACA 60.095 37.037 13.20 0.00 0.00 2.29
2837 2953 1.338107 TCACACCAGATCCACGACTT 58.662 50.000 0.00 0.00 0.00 3.01
2854 2970 3.594312 GACTTTTCAACGTTGACGACAG 58.406 45.455 29.74 22.33 43.02 3.51
2958 3076 6.528537 TCTTAATTTGTGCCATACTTGCAT 57.471 33.333 0.00 0.00 41.46 3.96
2998 3116 3.609853 TGAATCTATGTGACCAACCAGC 58.390 45.455 0.00 0.00 0.00 4.85
3011 3129 5.189736 TGACCAACCAGCATATCTTACTCTT 59.810 40.000 0.00 0.00 0.00 2.85
3057 3175 6.677913 TGTAAGGAGTGCTTGCTTTTTATTC 58.322 36.000 13.27 0.00 38.53 1.75
3118 3236 3.303791 GCCTGTACTTTTCACCAACGAAG 60.304 47.826 0.00 0.00 0.00 3.79
3186 3304 4.414337 ACCAATAAGAGATGACTGAGCC 57.586 45.455 0.00 0.00 0.00 4.70
3458 3580 5.627172 TCGAATTAATTAGCAAGTGTGTGC 58.373 37.500 0.00 0.00 45.28 4.57
3575 3698 5.305128 CACCAGGGGCATATTGTTGATTTAT 59.695 40.000 0.00 0.00 0.00 1.40
3803 3926 4.964593 TCTTTGTTCTAACCCACACCTAC 58.035 43.478 0.00 0.00 0.00 3.18
3860 3984 2.517959 TGGGAGCTTGATGGAAAACTG 58.482 47.619 0.00 0.00 0.00 3.16
3862 3986 2.165998 GGAGCTTGATGGAAAACTGCT 58.834 47.619 0.00 0.00 0.00 4.24
3865 3989 2.818432 AGCTTGATGGAAAACTGCTGAG 59.182 45.455 0.00 0.00 0.00 3.35
3889 4013 7.280356 AGTTTTGTAGTCAGTGGTCACTAATT 58.720 34.615 3.06 0.00 40.20 1.40
3929 4053 2.625737 ACGAGTGAAATGAGATGGCAG 58.374 47.619 0.00 0.00 0.00 4.85
4048 4173 7.665559 TGAAGTAAGATAGAACTGTTGGCATTT 59.334 33.333 0.00 0.00 0.00 2.32
4057 4182 0.763652 TGTTGGCATTTGGGTTGCAT 59.236 45.000 0.00 0.00 41.95 3.96
4193 4318 9.219603 CACTACAAGATATTTGTATATGTGGGG 57.780 37.037 9.46 0.00 34.75 4.96
4226 4351 5.712004 AGAGAACGAGAAGTTTAGCCTTAC 58.288 41.667 0.00 0.00 44.35 2.34
4273 5168 8.095169 AGGGCTTATATTGAACTTAGGTTATCG 58.905 37.037 0.00 0.00 35.58 2.92
4468 5369 9.250624 ACAAAAGATACGATTATAAGTCTGCTC 57.749 33.333 0.00 0.00 0.00 4.26
4471 5372 7.753309 AGATACGATTATAAGTCTGCTCAGT 57.247 36.000 0.00 0.00 0.00 3.41
4659 5561 7.596995 GCTATAATGAGTCTGTACAAGATGGTC 59.403 40.741 0.00 0.00 37.23 4.02
4678 5580 2.162408 GTCATTACCTGCCAAACTCTGC 59.838 50.000 0.00 0.00 0.00 4.26
4682 5584 0.036022 ACCTGCCAAACTCTGCTCTC 59.964 55.000 0.00 0.00 0.00 3.20
4695 5597 5.381757 ACTCTGCTCTCCGACTATTTATCT 58.618 41.667 0.00 0.00 0.00 1.98
4795 5725 2.345760 GGTGTGGCCCATGAAGCAG 61.346 63.158 0.00 0.00 0.00 4.24
4953 5883 0.250295 TGCAGTGCTGACTACAACCC 60.250 55.000 17.60 0.00 0.00 4.11
5571 6510 4.390048 GGTTAGGCTGCCGAACAA 57.610 55.556 34.78 17.32 40.15 2.83
5588 6527 6.457663 GCCGAACAAAGCATATTGTACACATA 60.458 38.462 0.00 0.00 42.49 2.29
5595 6534 8.542132 CAAAGCATATTGTACACATATTTTGGC 58.458 33.333 0.00 3.28 0.00 4.52
5661 6600 1.895798 ACTGTCTCTCGCTGATCCAAA 59.104 47.619 0.00 0.00 0.00 3.28
5666 6605 4.761739 TGTCTCTCGCTGATCCAAAATTTT 59.238 37.500 0.00 0.00 0.00 1.82
5754 6693 2.264455 AGAGTTGAGGTGAGCAATCCT 58.736 47.619 0.00 0.00 36.70 3.24
5808 6747 7.514784 TGAATGGGCATGACATATTTTCTAG 57.485 36.000 0.00 0.00 0.00 2.43
5809 6748 6.491062 TGAATGGGCATGACATATTTTCTAGG 59.509 38.462 0.00 0.00 0.00 3.02
5810 6749 4.728772 TGGGCATGACATATTTTCTAGGG 58.271 43.478 0.00 0.00 0.00 3.53
5811 6750 4.415179 TGGGCATGACATATTTTCTAGGGA 59.585 41.667 0.00 0.00 0.00 4.20
5812 6751 5.074929 TGGGCATGACATATTTTCTAGGGAT 59.925 40.000 0.00 0.00 0.00 3.85
5813 6752 6.012745 GGGCATGACATATTTTCTAGGGATT 58.987 40.000 0.00 0.00 0.00 3.01
5814 6753 6.494835 GGGCATGACATATTTTCTAGGGATTT 59.505 38.462 0.00 0.00 0.00 2.17
5815 6754 7.015584 GGGCATGACATATTTTCTAGGGATTTT 59.984 37.037 0.00 0.00 0.00 1.82
5816 6755 8.424133 GGCATGACATATTTTCTAGGGATTTTT 58.576 33.333 0.00 0.00 0.00 1.94
5824 6763 9.862149 ATATTTTCTAGGGATTTTTACATCGGT 57.138 29.630 0.00 0.00 0.00 4.69
5825 6764 6.995511 TTTCTAGGGATTTTTACATCGGTG 57.004 37.500 0.00 0.00 0.00 4.94
5826 6765 4.448210 TCTAGGGATTTTTACATCGGTGC 58.552 43.478 0.00 0.00 0.00 5.01
5827 6766 2.375146 AGGGATTTTTACATCGGTGCC 58.625 47.619 0.00 0.00 0.00 5.01
5828 6767 1.407618 GGGATTTTTACATCGGTGCCC 59.592 52.381 0.00 0.00 0.00 5.36
5829 6768 1.407618 GGATTTTTACATCGGTGCCCC 59.592 52.381 0.00 0.00 0.00 5.80
5830 6769 2.375146 GATTTTTACATCGGTGCCCCT 58.625 47.619 0.00 0.00 0.00 4.79
5831 6770 1.540267 TTTTTACATCGGTGCCCCTG 58.460 50.000 0.00 0.00 0.00 4.45
5832 6771 0.322997 TTTTACATCGGTGCCCCTGG 60.323 55.000 0.00 0.00 0.00 4.45
5833 6772 1.493854 TTTACATCGGTGCCCCTGGT 61.494 55.000 0.00 0.00 0.00 4.00
5834 6773 1.493854 TTACATCGGTGCCCCTGGTT 61.494 55.000 0.00 0.00 0.00 3.67
5835 6774 1.493854 TACATCGGTGCCCCTGGTTT 61.494 55.000 0.00 0.00 0.00 3.27
5836 6775 2.046285 CATCGGTGCCCCTGGTTTC 61.046 63.158 0.00 0.00 0.00 2.78
5837 6776 2.231380 ATCGGTGCCCCTGGTTTCT 61.231 57.895 0.00 0.00 0.00 2.52
5838 6777 1.789576 ATCGGTGCCCCTGGTTTCTT 61.790 55.000 0.00 0.00 0.00 2.52
5839 6778 1.128809 TCGGTGCCCCTGGTTTCTTA 61.129 55.000 0.00 0.00 0.00 2.10
5840 6779 0.676782 CGGTGCCCCTGGTTTCTTAG 60.677 60.000 0.00 0.00 0.00 2.18
5841 6780 0.965866 GGTGCCCCTGGTTTCTTAGC 60.966 60.000 0.00 0.00 0.00 3.09
5842 6781 0.038310 GTGCCCCTGGTTTCTTAGCT 59.962 55.000 0.00 0.00 0.00 3.32
5843 6782 0.328258 TGCCCCTGGTTTCTTAGCTC 59.672 55.000 0.00 0.00 0.00 4.09
5844 6783 0.394488 GCCCCTGGTTTCTTAGCTCC 60.394 60.000 0.00 0.00 0.00 4.70
5845 6784 0.991920 CCCCTGGTTTCTTAGCTCCA 59.008 55.000 0.00 0.00 0.00 3.86
5846 6785 1.340114 CCCCTGGTTTCTTAGCTCCAC 60.340 57.143 0.00 0.00 0.00 4.02
5847 6786 1.630878 CCCTGGTTTCTTAGCTCCACT 59.369 52.381 0.00 0.00 0.00 4.00
5848 6787 2.355209 CCCTGGTTTCTTAGCTCCACTC 60.355 54.545 0.00 0.00 0.00 3.51
5849 6788 2.303022 CCTGGTTTCTTAGCTCCACTCA 59.697 50.000 0.00 0.00 0.00 3.41
5850 6789 3.054802 CCTGGTTTCTTAGCTCCACTCAT 60.055 47.826 0.00 0.00 0.00 2.90
5851 6790 4.187694 CTGGTTTCTTAGCTCCACTCATC 58.812 47.826 0.00 0.00 0.00 2.92
5852 6791 3.055094 TGGTTTCTTAGCTCCACTCATCC 60.055 47.826 0.00 0.00 0.00 3.51
5853 6792 3.055094 GGTTTCTTAGCTCCACTCATCCA 60.055 47.826 0.00 0.00 0.00 3.41
5854 6793 4.384647 GGTTTCTTAGCTCCACTCATCCAT 60.385 45.833 0.00 0.00 0.00 3.41
5855 6794 4.679373 TTCTTAGCTCCACTCATCCATC 57.321 45.455 0.00 0.00 0.00 3.51
5856 6795 2.968574 TCTTAGCTCCACTCATCCATCC 59.031 50.000 0.00 0.00 0.00 3.51
5857 6796 1.722034 TAGCTCCACTCATCCATCCC 58.278 55.000 0.00 0.00 0.00 3.85
5858 6797 0.030297 AGCTCCACTCATCCATCCCT 60.030 55.000 0.00 0.00 0.00 4.20
5859 6798 1.221523 AGCTCCACTCATCCATCCCTA 59.778 52.381 0.00 0.00 0.00 3.53
5860 6799 1.346068 GCTCCACTCATCCATCCCTAC 59.654 57.143 0.00 0.00 0.00 3.18
5861 6800 1.615883 CTCCACTCATCCATCCCTACG 59.384 57.143 0.00 0.00 0.00 3.51
5862 6801 0.034059 CCACTCATCCATCCCTACGC 59.966 60.000 0.00 0.00 0.00 4.42
5863 6802 1.043816 CACTCATCCATCCCTACGCT 58.956 55.000 0.00 0.00 0.00 5.07
5864 6803 1.000283 CACTCATCCATCCCTACGCTC 60.000 57.143 0.00 0.00 0.00 5.03
5865 6804 1.133325 ACTCATCCATCCCTACGCTCT 60.133 52.381 0.00 0.00 0.00 4.09
5866 6805 1.967066 CTCATCCATCCCTACGCTCTT 59.033 52.381 0.00 0.00 0.00 2.85
5867 6806 3.157881 CTCATCCATCCCTACGCTCTTA 58.842 50.000 0.00 0.00 0.00 2.10
5868 6807 3.572642 TCATCCATCCCTACGCTCTTAA 58.427 45.455 0.00 0.00 0.00 1.85
5869 6808 3.321111 TCATCCATCCCTACGCTCTTAAC 59.679 47.826 0.00 0.00 0.00 2.01
5870 6809 3.028094 TCCATCCCTACGCTCTTAACT 57.972 47.619 0.00 0.00 0.00 2.24
5871 6810 3.371965 TCCATCCCTACGCTCTTAACTT 58.628 45.455 0.00 0.00 0.00 2.66
5872 6811 3.773119 TCCATCCCTACGCTCTTAACTTT 59.227 43.478 0.00 0.00 0.00 2.66
5873 6812 4.224370 TCCATCCCTACGCTCTTAACTTTT 59.776 41.667 0.00 0.00 0.00 2.27
5874 6813 4.332819 CCATCCCTACGCTCTTAACTTTTG 59.667 45.833 0.00 0.00 0.00 2.44
5875 6814 3.332034 TCCCTACGCTCTTAACTTTTGC 58.668 45.455 0.00 0.00 0.00 3.68
5876 6815 3.007614 TCCCTACGCTCTTAACTTTTGCT 59.992 43.478 0.00 0.00 0.00 3.91
5877 6816 3.751698 CCCTACGCTCTTAACTTTTGCTT 59.248 43.478 0.00 0.00 0.00 3.91
5878 6817 4.933400 CCCTACGCTCTTAACTTTTGCTTA 59.067 41.667 0.00 0.00 0.00 3.09
5879 6818 5.063564 CCCTACGCTCTTAACTTTTGCTTAG 59.936 44.000 0.00 0.00 0.00 2.18
5880 6819 5.638234 CCTACGCTCTTAACTTTTGCTTAGT 59.362 40.000 0.00 0.00 0.00 2.24
5881 6820 6.147328 CCTACGCTCTTAACTTTTGCTTAGTT 59.853 38.462 0.00 0.00 39.13 2.24
5882 6821 6.373186 ACGCTCTTAACTTTTGCTTAGTTT 57.627 33.333 0.00 0.00 37.12 2.66
5883 6822 6.792326 ACGCTCTTAACTTTTGCTTAGTTTT 58.208 32.000 0.00 0.00 37.12 2.43
5884 6823 6.910972 ACGCTCTTAACTTTTGCTTAGTTTTC 59.089 34.615 0.00 0.00 37.12 2.29
5885 6824 6.359883 CGCTCTTAACTTTTGCTTAGTTTTCC 59.640 38.462 0.00 0.00 37.12 3.13
5886 6825 6.641314 GCTCTTAACTTTTGCTTAGTTTTCCC 59.359 38.462 0.00 0.00 37.12 3.97
5887 6826 7.046292 TCTTAACTTTTGCTTAGTTTTCCCC 57.954 36.000 0.00 0.00 37.12 4.81
5888 6827 6.608002 TCTTAACTTTTGCTTAGTTTTCCCCA 59.392 34.615 0.00 0.00 37.12 4.96
5889 6828 4.665833 ACTTTTGCTTAGTTTTCCCCAC 57.334 40.909 0.00 0.00 0.00 4.61
5890 6829 4.286707 ACTTTTGCTTAGTTTTCCCCACT 58.713 39.130 0.00 0.00 0.00 4.00
5891 6830 4.341235 ACTTTTGCTTAGTTTTCCCCACTC 59.659 41.667 0.00 0.00 0.00 3.51
5892 6831 2.579410 TGCTTAGTTTTCCCCACTCC 57.421 50.000 0.00 0.00 0.00 3.85
5893 6832 2.062636 TGCTTAGTTTTCCCCACTCCT 58.937 47.619 0.00 0.00 0.00 3.69
5894 6833 2.445525 TGCTTAGTTTTCCCCACTCCTT 59.554 45.455 0.00 0.00 0.00 3.36
5895 6834 3.117284 TGCTTAGTTTTCCCCACTCCTTT 60.117 43.478 0.00 0.00 0.00 3.11
5896 6835 3.255888 GCTTAGTTTTCCCCACTCCTTTG 59.744 47.826 0.00 0.00 0.00 2.77
5897 6836 1.704641 AGTTTTCCCCACTCCTTTGC 58.295 50.000 0.00 0.00 0.00 3.68
5898 6837 0.679505 GTTTTCCCCACTCCTTTGCC 59.320 55.000 0.00 0.00 0.00 4.52
5899 6838 0.471022 TTTTCCCCACTCCTTTGCCC 60.471 55.000 0.00 0.00 0.00 5.36
5900 6839 2.706952 TTTCCCCACTCCTTTGCCCG 62.707 60.000 0.00 0.00 0.00 6.13
5901 6840 3.646715 CCCCACTCCTTTGCCCGA 61.647 66.667 0.00 0.00 0.00 5.14
5902 6841 2.434331 CCCACTCCTTTGCCCGAA 59.566 61.111 0.00 0.00 0.00 4.30
5903 6842 1.228429 CCCACTCCTTTGCCCGAAA 60.228 57.895 0.00 0.00 0.00 3.46
5904 6843 1.524008 CCCACTCCTTTGCCCGAAAC 61.524 60.000 0.00 0.00 0.00 2.78
5905 6844 1.524008 CCACTCCTTTGCCCGAAACC 61.524 60.000 0.00 0.00 0.00 3.27
5906 6845 1.228459 ACTCCTTTGCCCGAAACCC 60.228 57.895 0.00 0.00 0.00 4.11
5907 6846 1.074951 CTCCTTTGCCCGAAACCCT 59.925 57.895 0.00 0.00 0.00 4.34
5908 6847 0.960861 CTCCTTTGCCCGAAACCCTC 60.961 60.000 0.00 0.00 0.00 4.30
5909 6848 1.228429 CCTTTGCCCGAAACCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
5910 6849 1.244019 CCTTTGCCCGAAACCCTCAG 61.244 60.000 0.00 0.00 0.00 3.35
5911 6850 0.250727 CTTTGCCCGAAACCCTCAGA 60.251 55.000 0.00 0.00 0.00 3.27
5912 6851 0.183971 TTTGCCCGAAACCCTCAGAA 59.816 50.000 0.00 0.00 0.00 3.02
5913 6852 0.250727 TTGCCCGAAACCCTCAGAAG 60.251 55.000 0.00 0.00 0.00 2.85
5914 6853 1.125093 TGCCCGAAACCCTCAGAAGA 61.125 55.000 0.00 0.00 0.00 2.87
5915 6854 0.391793 GCCCGAAACCCTCAGAAGAG 60.392 60.000 0.00 0.00 41.72 2.85
5925 6864 2.071688 CTCAGAAGAGGTCACAACGG 57.928 55.000 0.00 0.00 38.26 4.44
5926 6865 1.613925 CTCAGAAGAGGTCACAACGGA 59.386 52.381 0.00 0.00 38.26 4.69
5927 6866 1.340248 TCAGAAGAGGTCACAACGGAC 59.660 52.381 0.00 0.00 37.06 4.79
5928 6867 0.314302 AGAAGAGGTCACAACGGACG 59.686 55.000 0.00 0.00 38.70 4.79
5929 6868 0.031721 GAAGAGGTCACAACGGACGT 59.968 55.000 0.00 0.00 38.70 4.34
5930 6869 4.240049 GAGGTCACAACGGACGTC 57.760 61.111 7.13 7.13 42.99 4.34
5931 6870 1.728426 GAGGTCACAACGGACGTCG 60.728 63.158 9.92 7.64 41.19 5.12
5932 6871 3.400590 GGTCACAACGGACGTCGC 61.401 66.667 9.92 1.55 43.89 5.19
5933 6872 2.354305 GTCACAACGGACGTCGCT 60.354 61.111 9.92 0.00 43.89 4.93
5934 6873 2.354188 TCACAACGGACGTCGCTG 60.354 61.111 9.92 8.89 43.89 5.18
5936 6875 2.354305 ACAACGGACGTCGCTGTC 60.354 61.111 9.92 0.00 43.70 3.51
5937 6876 3.458579 CAACGGACGTCGCTGTCG 61.459 66.667 9.92 9.50 43.89 4.35
5938 6877 4.695231 AACGGACGTCGCTGTCGG 62.695 66.667 9.92 11.12 43.89 4.79
5941 6880 4.353437 GGACGTCGCTGTCGGGTT 62.353 66.667 9.92 0.00 39.83 4.11
5942 6881 2.562912 GACGTCGCTGTCGGGTTA 59.437 61.111 0.00 0.00 36.13 2.85
5943 6882 1.513586 GACGTCGCTGTCGGGTTAG 60.514 63.158 0.00 0.00 36.13 2.34
5944 6883 2.192608 GACGTCGCTGTCGGGTTAGT 62.193 60.000 0.00 0.00 36.13 2.24
5945 6884 1.800315 CGTCGCTGTCGGGTTAGTG 60.800 63.158 0.00 0.00 36.13 2.74
5946 6885 2.092882 GTCGCTGTCGGGTTAGTGC 61.093 63.158 0.00 0.00 36.13 4.40
5947 6886 2.261671 CGCTGTCGGGTTAGTGCT 59.738 61.111 0.00 0.00 0.00 4.40
5948 6887 1.374252 CGCTGTCGGGTTAGTGCTT 60.374 57.895 0.00 0.00 0.00 3.91
5949 6888 0.949105 CGCTGTCGGGTTAGTGCTTT 60.949 55.000 0.00 0.00 0.00 3.51
5950 6889 0.517316 GCTGTCGGGTTAGTGCTTTG 59.483 55.000 0.00 0.00 0.00 2.77
5951 6890 1.876416 GCTGTCGGGTTAGTGCTTTGA 60.876 52.381 0.00 0.00 0.00 2.69
5952 6891 1.798813 CTGTCGGGTTAGTGCTTTGAC 59.201 52.381 0.00 0.00 0.00 3.18
5953 6892 1.154197 GTCGGGTTAGTGCTTTGACC 58.846 55.000 0.00 0.00 0.00 4.02
5954 6893 0.320073 TCGGGTTAGTGCTTTGACCG 60.320 55.000 0.00 0.00 41.06 4.79
5955 6894 0.601841 CGGGTTAGTGCTTTGACCGT 60.602 55.000 0.00 0.00 35.47 4.83
5956 6895 1.601166 GGGTTAGTGCTTTGACCGTT 58.399 50.000 0.00 0.00 32.91 4.44
5957 6896 2.769893 GGGTTAGTGCTTTGACCGTTA 58.230 47.619 0.00 0.00 32.91 3.18
5958 6897 3.140623 GGGTTAGTGCTTTGACCGTTAA 58.859 45.455 0.00 0.00 32.91 2.01
5959 6898 3.058708 GGGTTAGTGCTTTGACCGTTAAC 60.059 47.826 0.00 0.00 32.91 2.01
5960 6899 3.811497 GGTTAGTGCTTTGACCGTTAACT 59.189 43.478 3.71 0.00 0.00 2.24
5961 6900 4.084171 GGTTAGTGCTTTGACCGTTAACTC 60.084 45.833 3.71 0.00 0.00 3.01
5962 6901 3.470645 AGTGCTTTGACCGTTAACTCT 57.529 42.857 3.71 0.00 0.00 3.24
5963 6902 3.131396 AGTGCTTTGACCGTTAACTCTG 58.869 45.455 3.71 0.00 0.00 3.35
5964 6903 3.128349 GTGCTTTGACCGTTAACTCTGA 58.872 45.455 3.71 0.00 0.00 3.27
5965 6904 3.059800 GTGCTTTGACCGTTAACTCTGAC 60.060 47.826 3.71 0.00 0.00 3.51
5966 6905 2.155155 GCTTTGACCGTTAACTCTGACG 59.845 50.000 3.71 0.00 38.90 4.35
5967 6906 3.635331 CTTTGACCGTTAACTCTGACGA 58.365 45.455 3.71 0.00 41.53 4.20
5968 6907 2.983402 TGACCGTTAACTCTGACGAG 57.017 50.000 3.71 0.00 41.53 4.18
5976 6915 4.135153 CTCTGACGAGTGGGGCCG 62.135 72.222 0.00 0.00 32.47 6.13
5991 6930 4.011517 CCGCGTTGGGGGTGTAGT 62.012 66.667 4.92 0.00 41.19 2.73
5992 6931 2.031465 CGCGTTGGGGGTGTAGTT 59.969 61.111 0.00 0.00 0.00 2.24
5993 6932 2.322081 CGCGTTGGGGGTGTAGTTG 61.322 63.158 0.00 0.00 0.00 3.16
5994 6933 1.228033 GCGTTGGGGGTGTAGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
5995 6934 0.820482 GCGTTGGGGGTGTAGTTGTT 60.820 55.000 0.00 0.00 0.00 2.83
5996 6935 1.232119 CGTTGGGGGTGTAGTTGTTC 58.768 55.000 0.00 0.00 0.00 3.18
5997 6936 1.475392 CGTTGGGGGTGTAGTTGTTCA 60.475 52.381 0.00 0.00 0.00 3.18
5998 6937 2.657143 GTTGGGGGTGTAGTTGTTCAA 58.343 47.619 0.00 0.00 0.00 2.69
5999 6938 2.351706 TGGGGGTGTAGTTGTTCAAC 57.648 50.000 7.50 7.50 0.00 3.18
6000 6939 1.133730 TGGGGGTGTAGTTGTTCAACC 60.134 52.381 11.38 0.00 40.36 3.77
6001 6940 1.232119 GGGGTGTAGTTGTTCAACCG 58.768 55.000 11.38 0.00 41.84 4.44
6002 6941 1.475571 GGGGTGTAGTTGTTCAACCGT 60.476 52.381 11.38 0.00 41.84 4.83
6003 6942 2.291365 GGGTGTAGTTGTTCAACCGTT 58.709 47.619 11.38 0.00 31.58 4.44
6004 6943 2.032426 GGGTGTAGTTGTTCAACCGTTG 59.968 50.000 11.38 4.78 31.58 4.10
6005 6944 2.032426 GGTGTAGTTGTTCAACCGTTGG 59.968 50.000 11.35 0.00 0.00 3.77
6006 6945 2.032426 GTGTAGTTGTTCAACCGTTGGG 59.968 50.000 11.35 0.00 40.11 4.12
6007 6946 1.002142 GTAGTTGTTCAACCGTTGGGC 60.002 52.381 11.35 5.43 36.48 5.36
6008 6947 0.395173 AGTTGTTCAACCGTTGGGCT 60.395 50.000 11.35 0.91 36.48 5.19
6009 6948 0.248866 GTTGTTCAACCGTTGGGCTG 60.249 55.000 11.35 0.00 36.48 4.85
6010 6949 0.681564 TTGTTCAACCGTTGGGCTGT 60.682 50.000 11.35 0.00 36.48 4.40
6011 6950 1.098712 TGTTCAACCGTTGGGCTGTC 61.099 55.000 11.35 0.00 36.48 3.51
6012 6951 1.527380 TTCAACCGTTGGGCTGTCC 60.527 57.895 11.35 0.00 36.48 4.02
6024 6963 2.654749 GGCTGTCCCTTGCATTAAAC 57.345 50.000 0.00 0.00 0.00 2.01
6025 6964 1.135402 GGCTGTCCCTTGCATTAAACG 60.135 52.381 0.00 0.00 0.00 3.60
6026 6965 1.732405 GCTGTCCCTTGCATTAAACGC 60.732 52.381 0.00 0.00 0.00 4.84
6027 6966 0.885196 TGTCCCTTGCATTAAACGCC 59.115 50.000 0.00 0.00 0.00 5.68
6028 6967 1.173913 GTCCCTTGCATTAAACGCCT 58.826 50.000 0.00 0.00 0.00 5.52
6029 6968 1.135402 GTCCCTTGCATTAAACGCCTG 60.135 52.381 0.00 0.00 0.00 4.85
6030 6969 0.458370 CCCTTGCATTAAACGCCTGC 60.458 55.000 0.00 0.00 36.45 4.85
6031 6970 0.798009 CCTTGCATTAAACGCCTGCG 60.798 55.000 10.40 10.40 46.03 5.18
6032 6971 1.405469 CTTGCATTAAACGCCTGCGC 61.405 55.000 12.03 0.00 44.19 6.09
6053 6992 4.379243 CCGCCACGACAGAAGCCT 62.379 66.667 0.00 0.00 0.00 4.58
6054 6993 3.114616 CGCCACGACAGAAGCCTG 61.115 66.667 0.00 0.00 45.76 4.85
6055 6994 3.426568 GCCACGACAGAAGCCTGC 61.427 66.667 0.00 0.00 44.16 4.85
6056 6995 2.345244 CCACGACAGAAGCCTGCT 59.655 61.111 0.00 0.00 44.16 4.24
6057 6996 1.591703 CCACGACAGAAGCCTGCTA 59.408 57.895 0.00 0.00 44.16 3.49
6058 6997 0.176680 CCACGACAGAAGCCTGCTAT 59.823 55.000 0.00 0.00 44.16 2.97
6059 6998 1.284657 CACGACAGAAGCCTGCTATG 58.715 55.000 0.00 0.00 44.16 2.23
6060 6999 0.460987 ACGACAGAAGCCTGCTATGC 60.461 55.000 0.00 0.00 44.16 3.14
6061 7000 0.460811 CGACAGAAGCCTGCTATGCA 60.461 55.000 0.00 0.00 44.16 3.96
6062 7001 1.809271 CGACAGAAGCCTGCTATGCAT 60.809 52.381 3.79 3.79 44.16 3.96
6063 7002 1.602851 GACAGAAGCCTGCTATGCATG 59.397 52.381 10.16 0.26 44.16 4.06
6067 7006 2.726274 GCCTGCTATGCATGCACC 59.274 61.111 25.37 14.86 46.44 5.01
6068 7007 2.853290 GCCTGCTATGCATGCACCC 61.853 63.158 25.37 14.49 46.44 4.61
6069 7008 1.454295 CCTGCTATGCATGCACCCA 60.454 57.895 25.37 18.28 38.13 4.51
6070 7009 1.038681 CCTGCTATGCATGCACCCAA 61.039 55.000 25.37 8.67 38.13 4.12
6071 7010 0.101759 CTGCTATGCATGCACCCAAC 59.898 55.000 25.37 11.59 38.13 3.77
6072 7011 0.611340 TGCTATGCATGCACCCAACA 60.611 50.000 25.37 14.16 35.31 3.33
6073 7012 0.531657 GCTATGCATGCACCCAACAA 59.468 50.000 25.37 0.00 0.00 2.83
6074 7013 1.067000 GCTATGCATGCACCCAACAAA 60.067 47.619 25.37 0.00 0.00 2.83
6075 7014 2.609350 CTATGCATGCACCCAACAAAC 58.391 47.619 25.37 0.00 0.00 2.93
6076 7015 0.757512 ATGCATGCACCCAACAAACA 59.242 45.000 25.37 0.00 0.00 2.83
6077 7016 0.757512 TGCATGCACCCAACAAACAT 59.242 45.000 18.46 0.00 0.00 2.71
6078 7017 1.149987 GCATGCACCCAACAAACATG 58.850 50.000 14.21 0.00 40.80 3.21
6079 7018 1.149987 CATGCACCCAACAAACATGC 58.850 50.000 0.00 0.00 32.54 4.06
6080 7019 0.035176 ATGCACCCAACAAACATGCC 59.965 50.000 0.00 0.00 35.37 4.40
6081 7020 1.047596 TGCACCCAACAAACATGCCT 61.048 50.000 0.00 0.00 35.37 4.75
6082 7021 0.600782 GCACCCAACAAACATGCCTG 60.601 55.000 0.00 0.00 0.00 4.85
6083 7022 0.600782 CACCCAACAAACATGCCTGC 60.601 55.000 0.00 0.00 0.00 4.85
6084 7023 1.047596 ACCCAACAAACATGCCTGCA 61.048 50.000 0.00 0.00 0.00 4.41
6085 7024 0.322322 CCCAACAAACATGCCTGCAT 59.678 50.000 0.00 0.00 37.08 3.96
6092 7031 3.427670 CATGCCTGCATGCGATGA 58.572 55.556 18.20 0.00 45.71 2.92
6093 7032 1.956802 CATGCCTGCATGCGATGAT 59.043 52.632 18.20 0.00 45.71 2.45
6094 7033 0.387239 CATGCCTGCATGCGATGATG 60.387 55.000 18.20 8.99 45.71 3.07
6104 7043 4.923710 CGATGATGCGCCGACCGA 62.924 66.667 4.18 0.00 40.02 4.69
6105 7044 3.032609 GATGATGCGCCGACCGAG 61.033 66.667 4.18 0.00 40.02 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.853490 TCACTAAGGCAGAGATAGATTCCTA 58.147 40.000 0.00 0.00 0.00 2.94
298 309 5.971763 CTTCCTCAGCACTAAGACAAGTAT 58.028 41.667 0.00 0.00 0.00 2.12
347 358 6.003326 TGTGAAGAGTGATGCCAATTAAAGA 58.997 36.000 0.00 0.00 0.00 2.52
358 370 2.189594 TGGGCTTGTGAAGAGTGATG 57.810 50.000 0.00 0.00 0.00 3.07
485 498 9.612620 CTTGGTGATTTTTAAAGTACTCATCAC 57.387 33.333 0.00 7.59 38.78 3.06
520 533 1.724582 GCGCCACCATATTCGCCTTT 61.725 55.000 0.00 0.00 41.53 3.11
699 712 0.756294 TTCCTTGAGTCGTGCTTCCA 59.244 50.000 0.00 0.00 0.00 3.53
804 817 2.759973 TCCGGAAGATGCGAGCCT 60.760 61.111 0.00 0.00 30.86 4.58
806 819 2.914777 AAGCTCCGGAAGATGCGAGC 62.915 60.000 5.23 2.20 35.76 5.03
856 877 3.664025 CTGGATCGGTTGGCGCTGA 62.664 63.158 7.64 0.00 0.00 4.26
863 884 0.806102 ATTCGCGTCTGGATCGGTTG 60.806 55.000 5.77 0.00 0.00 3.77
889 910 5.321927 AGGATTTTTCTTTTCCTCGGCTTA 58.678 37.500 0.00 0.00 34.80 3.09
1051 1096 2.742372 GGTAGGTGCACAGCGTGG 60.742 66.667 20.43 0.00 33.64 4.94
1059 1104 1.292223 GCGAACTCAGGTAGGTGCA 59.708 57.895 0.00 0.00 0.00 4.57
1068 1113 0.508641 CAACGACAAGGCGAACTCAG 59.491 55.000 0.66 0.00 34.83 3.35
1139 1184 0.327000 CCCCTTCCTGAGTCCTGGAT 60.327 60.000 0.00 0.00 39.67 3.41
1158 1203 6.407202 ACAAGACATACCCACTAACAATCTC 58.593 40.000 0.00 0.00 0.00 2.75
1161 1206 6.442564 TCCTACAAGACATACCCACTAACAAT 59.557 38.462 0.00 0.00 0.00 2.71
1174 1219 2.919602 ACCCACCAATCCTACAAGACAT 59.080 45.455 0.00 0.00 0.00 3.06
1180 1225 2.038863 ACAGACCCACCAATCCTACA 57.961 50.000 0.00 0.00 0.00 2.74
1230 1275 6.475727 CAGCAATCCATTTCTCATGTGAATTC 59.524 38.462 10.79 0.00 0.00 2.17
1271 1316 6.834969 AGTAATTTAGGACAGAGGGAGTACTC 59.165 42.308 14.87 14.87 37.77 2.59
1272 1317 6.743788 AGTAATTTAGGACAGAGGGAGTACT 58.256 40.000 0.00 0.00 33.87 2.73
1273 1318 7.093421 ACAAGTAATTTAGGACAGAGGGAGTAC 60.093 40.741 0.00 0.00 0.00 2.73
1274 1319 6.958192 ACAAGTAATTTAGGACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
1275 1320 5.785940 ACAAGTAATTTAGGACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
1276 1321 6.301169 ACAAGTAATTTAGGACAGAGGGAG 57.699 41.667 0.00 0.00 0.00 4.30
1277 1322 5.105473 CGACAAGTAATTTAGGACAGAGGGA 60.105 44.000 0.00 0.00 0.00 4.20
1278 1323 5.109903 CGACAAGTAATTTAGGACAGAGGG 58.890 45.833 0.00 0.00 0.00 4.30
1279 1324 4.567159 GCGACAAGTAATTTAGGACAGAGG 59.433 45.833 0.00 0.00 0.00 3.69
1280 1325 5.168569 TGCGACAAGTAATTTAGGACAGAG 58.831 41.667 0.00 0.00 0.00 3.35
1281 1326 5.047590 TCTGCGACAAGTAATTTAGGACAGA 60.048 40.000 0.00 0.00 0.00 3.41
1282 1327 5.168569 TCTGCGACAAGTAATTTAGGACAG 58.831 41.667 0.00 0.00 0.00 3.51
1283 1328 5.142061 TCTGCGACAAGTAATTTAGGACA 57.858 39.130 0.00 0.00 0.00 4.02
1284 1329 6.476243 TTTCTGCGACAAGTAATTTAGGAC 57.524 37.500 0.00 0.00 0.00 3.85
1285 1330 6.093495 CCATTTCTGCGACAAGTAATTTAGGA 59.907 38.462 0.00 0.00 0.00 2.94
1286 1331 6.093495 TCCATTTCTGCGACAAGTAATTTAGG 59.907 38.462 0.00 0.00 0.00 2.69
1287 1332 7.072177 TCCATTTCTGCGACAAGTAATTTAG 57.928 36.000 0.00 0.00 0.00 1.85
1288 1333 7.120579 ACATCCATTTCTGCGACAAGTAATTTA 59.879 33.333 0.00 0.00 0.00 1.40
1289 1334 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
1290 1335 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1291 1336 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1292 1337 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1293 1338 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1294 1339 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1295 1340 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1296 1341 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1297 1342 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1298 1343 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
1299 1344 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
1300 1345 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
1301 1346 4.387256 GCGTCTAGATACATCCATTTCTGC 59.613 45.833 0.00 0.00 0.00 4.26
1302 1347 5.532557 TGCGTCTAGATACATCCATTTCTG 58.467 41.667 0.00 0.00 0.00 3.02
1303 1348 5.791336 TGCGTCTAGATACATCCATTTCT 57.209 39.130 0.00 0.00 0.00 2.52
1304 1349 7.426929 AAATGCGTCTAGATACATCCATTTC 57.573 36.000 10.00 0.00 0.00 2.17
1305 1350 7.807977 AAAATGCGTCTAGATACATCCATTT 57.192 32.000 10.00 9.00 0.00 2.32
1306 1351 7.807977 AAAAATGCGTCTAGATACATCCATT 57.192 32.000 10.00 4.57 0.00 3.16
1307 1352 8.150945 ACTAAAAATGCGTCTAGATACATCCAT 58.849 33.333 10.00 3.94 0.00 3.41
1308 1353 7.497595 ACTAAAAATGCGTCTAGATACATCCA 58.502 34.615 10.00 0.00 0.00 3.41
1309 1354 7.948278 ACTAAAAATGCGTCTAGATACATCC 57.052 36.000 10.00 0.00 0.00 3.51
1310 1355 9.250624 AGAACTAAAAATGCGTCTAGATACATC 57.749 33.333 10.00 0.00 0.00 3.06
1312 1357 9.731819 CTAGAACTAAAAATGCGTCTAGATACA 57.268 33.333 0.00 0.00 0.00 2.29
1313 1358 9.947669 TCTAGAACTAAAAATGCGTCTAGATAC 57.052 33.333 0.00 0.00 32.64 2.24
1316 1361 9.947669 GTATCTAGAACTAAAAATGCGTCTAGA 57.052 33.333 9.86 9.86 39.10 2.43
1317 1362 9.731819 TGTATCTAGAACTAAAAATGCGTCTAG 57.268 33.333 0.00 0.00 0.00 2.43
1319 1364 9.601217 AATGTATCTAGAACTAAAAATGCGTCT 57.399 29.630 0.00 0.00 0.00 4.18
1320 1365 9.851043 GAATGTATCTAGAACTAAAAATGCGTC 57.149 33.333 0.00 0.00 0.00 5.19
1321 1366 9.378551 TGAATGTATCTAGAACTAAAAATGCGT 57.621 29.630 0.00 0.00 0.00 5.24
1341 1386 9.643693 GTCACAAAAATGGATAGAAATGAATGT 57.356 29.630 0.00 0.00 0.00 2.71
1342 1387 9.642327 TGTCACAAAAATGGATAGAAATGAATG 57.358 29.630 0.00 0.00 0.00 2.67
1344 1389 9.695526 CTTGTCACAAAAATGGATAGAAATGAA 57.304 29.630 0.00 0.00 0.00 2.57
1345 1390 8.859090 ACTTGTCACAAAAATGGATAGAAATGA 58.141 29.630 0.00 0.00 0.00 2.57
1351 1396 9.277565 CGAATTACTTGTCACAAAAATGGATAG 57.722 33.333 0.00 0.00 0.00 2.08
1352 1397 8.240682 CCGAATTACTTGTCACAAAAATGGATA 58.759 33.333 0.00 0.00 0.00 2.59
1353 1398 7.090173 CCGAATTACTTGTCACAAAAATGGAT 58.910 34.615 0.00 0.00 0.00 3.41
1354 1399 6.442952 CCGAATTACTTGTCACAAAAATGGA 58.557 36.000 0.00 0.00 0.00 3.41
1355 1400 5.633182 CCCGAATTACTTGTCACAAAAATGG 59.367 40.000 0.00 0.00 0.00 3.16
1356 1401 6.362283 GTCCCGAATTACTTGTCACAAAAATG 59.638 38.462 0.00 0.00 0.00 2.32
1357 1402 6.443792 GTCCCGAATTACTTGTCACAAAAAT 58.556 36.000 0.00 0.00 0.00 1.82
1358 1403 5.504337 CGTCCCGAATTACTTGTCACAAAAA 60.504 40.000 0.00 0.00 0.00 1.94
1359 1404 4.024725 CGTCCCGAATTACTTGTCACAAAA 60.025 41.667 0.00 0.00 0.00 2.44
1360 1405 3.495377 CGTCCCGAATTACTTGTCACAAA 59.505 43.478 0.00 0.00 0.00 2.83
1361 1406 3.061322 CGTCCCGAATTACTTGTCACAA 58.939 45.455 0.00 0.00 0.00 3.33
1362 1407 2.610976 CCGTCCCGAATTACTTGTCACA 60.611 50.000 0.00 0.00 0.00 3.58
1363 1408 1.997606 CCGTCCCGAATTACTTGTCAC 59.002 52.381 0.00 0.00 0.00 3.67
1364 1409 1.894466 TCCGTCCCGAATTACTTGTCA 59.106 47.619 0.00 0.00 0.00 3.58
1365 1410 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
1366 1411 1.206371 CCTCCGTCCCGAATTACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
1367 1412 1.472728 CCCTCCGTCCCGAATTACTTG 60.473 57.143 0.00 0.00 0.00 3.16
1368 1413 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
1369 1414 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
1370 1415 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
1371 1416 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
1372 1417 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
1373 1418 0.467659 CTACTCCCTCCGTCCCGAAT 60.468 60.000 0.00 0.00 0.00 3.34
1374 1419 1.077212 CTACTCCCTCCGTCCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
1375 1420 0.982852 TACTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
1376 1421 0.110104 ATACTACTCCCTCCGTCCCG 59.890 60.000 0.00 0.00 0.00 5.14
1377 1422 1.618487 CATACTACTCCCTCCGTCCC 58.382 60.000 0.00 0.00 0.00 4.46
1378 1423 0.960286 GCATACTACTCCCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
1379 1424 1.609555 CTGCATACTACTCCCTCCGTC 59.390 57.143 0.00 0.00 0.00 4.79
1380 1425 1.063867 ACTGCATACTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
1381 1426 1.609555 GACTGCATACTACTCCCTCCG 59.390 57.143 0.00 0.00 0.00 4.63
1382 1427 2.888414 GAGACTGCATACTACTCCCTCC 59.112 54.545 0.00 0.00 0.00 4.30
1383 1428 3.316868 GTGAGACTGCATACTACTCCCTC 59.683 52.174 0.00 0.00 0.00 4.30
1384 1429 3.292460 GTGAGACTGCATACTACTCCCT 58.708 50.000 0.00 0.00 0.00 4.20
1385 1430 2.033550 CGTGAGACTGCATACTACTCCC 59.966 54.545 0.00 0.00 0.00 4.30
1435 1491 3.933955 CGTCCATGGTAATGTAAAACGGA 59.066 43.478 12.58 0.00 31.27 4.69
1470 1526 0.932955 TGGGATATGTTGCCCCATGT 59.067 50.000 0.00 0.00 44.67 3.21
1515 1571 8.577296 CCAGATCGAAGGATTAGTTCATAAGTA 58.423 37.037 0.00 0.00 31.51 2.24
1538 1594 2.123982 GCCCTCCTTGATGCCCAG 60.124 66.667 0.00 0.00 0.00 4.45
1607 1664 0.116143 TGCAAAGGCCAGGGGTTTAT 59.884 50.000 5.01 0.00 40.13 1.40
1614 1671 0.664761 CGTATGATGCAAAGGCCAGG 59.335 55.000 5.01 0.00 40.13 4.45
1615 1672 1.667236 TCGTATGATGCAAAGGCCAG 58.333 50.000 5.01 0.00 40.13 4.85
1713 1770 3.450578 TGTAATCTCGTTATTGACCGGC 58.549 45.455 0.00 0.00 0.00 6.13
1759 1816 3.138283 TCAACTGGTTTGGATTGAGGTCT 59.862 43.478 0.00 0.00 35.69 3.85
1783 1840 7.235399 TGTTGAGAGATATTAGCATGGGATACA 59.765 37.037 0.00 0.00 39.74 2.29
1785 1842 7.797121 TGTTGAGAGATATTAGCATGGGATA 57.203 36.000 0.00 0.00 0.00 2.59
1877 1958 7.378966 CAGATTATTTTCCGAGCTACAGGATA 58.621 38.462 5.97 0.00 36.28 2.59
1899 1980 9.638239 GATCAAAACTACCAAAATATTTGCAGA 57.362 29.630 0.39 0.00 0.00 4.26
1951 2032 3.455543 CCTTATTGTGGGCAATTTGGGAT 59.544 43.478 0.00 0.00 42.19 3.85
1966 2047 1.812571 GTGGGAGTGTGTGCCTTATTG 59.187 52.381 0.00 0.00 37.61 1.90
2035 2116 7.337436 GTGCCTACTACCATACCAAATTTGTTA 59.663 37.037 16.73 7.67 0.00 2.41
2044 2125 3.028850 GTCTGTGCCTACTACCATACCA 58.971 50.000 0.00 0.00 0.00 3.25
2051 2132 3.746492 CCTGTTTTGTCTGTGCCTACTAC 59.254 47.826 0.00 0.00 0.00 2.73
2069 2150 5.183228 CGGTTTACATCCAAAGTATCCTGT 58.817 41.667 0.00 0.00 0.00 4.00
2073 2154 5.554822 TTGCGGTTTACATCCAAAGTATC 57.445 39.130 0.00 0.00 0.00 2.24
2255 2337 5.290493 ACTGGCTGATATTCGGAACAATA 57.710 39.130 0.00 0.00 0.00 1.90
2430 2525 7.034685 TGCCAACATCATGAAAATAGATGAG 57.965 36.000 0.00 1.54 41.18 2.90
2433 2528 6.041637 AGCATGCCAACATCATGAAAATAGAT 59.958 34.615 15.66 0.00 42.84 1.98
2437 2532 4.481368 AGCATGCCAACATCATGAAAAT 57.519 36.364 15.66 0.00 42.84 1.82
2455 2550 0.884704 GAAACCAGCTCGGACAAGCA 60.885 55.000 8.91 0.00 45.00 3.91
2531 2626 2.590092 GCCCCAACATAGCTCCGT 59.410 61.111 0.00 0.00 0.00 4.69
2583 2678 5.307196 TCCTGGCCCAGTTTCTCTATTATAC 59.693 44.000 10.47 0.00 0.00 1.47
2584 2679 5.473273 TCCTGGCCCAGTTTCTCTATTATA 58.527 41.667 10.47 0.00 0.00 0.98
2587 2693 2.562296 TCCTGGCCCAGTTTCTCTATT 58.438 47.619 10.47 0.00 0.00 1.73
2622 2728 3.191371 GCGGGCCAGGATAAGAAATTATG 59.809 47.826 4.39 0.00 0.00 1.90
2623 2729 3.421844 GCGGGCCAGGATAAGAAATTAT 58.578 45.455 4.39 0.00 0.00 1.28
2686 2802 0.752658 TACCAGGATGCGAGTGATGG 59.247 55.000 0.00 0.00 31.97 3.51
2799 2915 6.039717 GGTGTGATGTGGCAAGATAATGTATT 59.960 38.462 0.00 0.00 0.00 1.89
2804 2920 3.949754 CTGGTGTGATGTGGCAAGATAAT 59.050 43.478 0.00 0.00 0.00 1.28
2837 2953 1.647346 AGCTGTCGTCAACGTTGAAA 58.353 45.000 31.20 19.76 39.21 2.69
2854 2970 3.141767 AGTGTTAAGAGGGGTTCAAGC 57.858 47.619 0.00 0.00 0.00 4.01
2899 3016 7.665559 ACCAATAGACTGAACTCAATGCTAAAA 59.334 33.333 0.00 0.00 0.00 1.52
2903 3020 5.171339 ACCAATAGACTGAACTCAATGCT 57.829 39.130 0.00 0.00 0.00 3.79
3057 3175 9.737427 ACTATGATACGAAAAATCTACACTCTG 57.263 33.333 0.00 0.00 0.00 3.35
3186 3304 4.553330 AACTGTGTTCAGGGGTATAGTG 57.447 45.455 0.47 0.00 45.14 2.74
3359 3481 7.860931 ACCTTTTCGGAGCAATTATGCATGAT 61.861 38.462 10.16 3.20 45.47 2.45
3458 3580 4.081972 ACTGAGGTGTAACTATGTCAGCAG 60.082 45.833 0.00 0.00 35.37 4.24
3575 3698 5.032846 AGAGATCCAGAATCTACCCAACAA 58.967 41.667 0.00 0.00 45.06 2.83
3610 3733 3.768215 TGCATTTGGACAATATGCCTGAA 59.232 39.130 19.54 7.31 43.01 3.02
3803 3926 3.594134 GACAAGGAGGTCAAGACATCTG 58.406 50.000 13.65 8.29 41.42 2.90
3860 3984 3.467803 ACCACTGACTACAAAACTCAGC 58.532 45.455 0.00 0.00 35.75 4.26
3862 3986 4.161565 AGTGACCACTGACTACAAAACTCA 59.838 41.667 1.31 0.00 40.75 3.41
3865 3989 7.492352 AATTAGTGACCACTGACTACAAAAC 57.508 36.000 12.54 0.00 42.52 2.43
3889 4013 6.137794 TCGTTTTCAGCAAAGTTATTCCAA 57.862 33.333 0.00 0.00 0.00 3.53
3929 4053 7.486551 TGACAAGTTACAAGCATAACACAAAAC 59.513 33.333 7.89 0.00 37.49 2.43
4037 4162 0.106335 TGCAACCCAAATGCCAACAG 59.894 50.000 0.00 0.00 43.16 3.16
4048 4173 1.411977 CACACCAAAAGATGCAACCCA 59.588 47.619 0.00 0.00 0.00 4.51
4057 4182 7.630082 AGGATAAGCTATAACACACCAAAAGA 58.370 34.615 0.00 0.00 0.00 2.52
4193 4318 6.185852 ACTTCTCGTTCTCTAAGCTAGAAC 57.814 41.667 15.16 15.16 46.09 3.01
4226 4351 8.458052 AGCCCTGAATTTTTAAACTTGTTTTTG 58.542 29.630 4.00 0.00 0.00 2.44
4242 5137 8.282256 ACCTAAGTTCAATATAAGCCCTGAATT 58.718 33.333 0.00 0.00 30.96 2.17
4334 5229 8.911247 AGAATATACTTTTCGTTGCCAAATTC 57.089 30.769 0.00 0.00 0.00 2.17
4468 5369 9.706691 TCTTAGGTCTGTTTTGAGTAAATACTG 57.293 33.333 0.00 0.00 36.50 2.74
4659 5561 2.421424 GAGCAGAGTTTGGCAGGTAATG 59.579 50.000 0.00 0.00 0.00 1.90
4678 5580 7.014422 ACCCTTTACAGATAAATAGTCGGAGAG 59.986 40.741 0.00 0.00 29.91 3.20
4682 5584 7.871463 CCTAACCCTTTACAGATAAATAGTCGG 59.129 40.741 0.00 0.00 29.85 4.79
4795 5725 2.158871 TGGCCCTACGGATATTGTTGAC 60.159 50.000 0.00 0.00 0.00 3.18
4953 5883 5.327616 TGCATTCAACATGGTTGATAAGG 57.672 39.130 12.09 2.53 0.00 2.69
5006 5936 3.956744 GAGGTAAAAGCTCCCAGATGTT 58.043 45.455 0.00 0.00 36.78 2.71
5212 6150 7.825681 CCATTGTTGGTATGTACATTCTCAAA 58.174 34.615 14.77 2.74 38.30 2.69
5357 6295 4.900635 ACGGCTCATGGAATAATCAAAC 57.099 40.909 0.00 0.00 0.00 2.93
5364 6302 1.270305 GCTGCTACGGCTCATGGAATA 60.270 52.381 0.00 0.00 39.59 1.75
5571 6510 7.147759 TGGCCAAAATATGTGTACAATATGCTT 60.148 33.333 0.61 0.03 0.00 3.91
5588 6527 3.167485 TCTGAAGCTGATTGGCCAAAAT 58.833 40.909 24.71 6.82 0.00 1.82
5595 6534 3.442625 TGCAGAATTCTGAAGCTGATTGG 59.557 43.478 34.43 8.00 46.59 3.16
5754 6693 1.570813 CGTCCATTTGCTCATCGCTA 58.429 50.000 0.00 0.00 40.11 4.26
5808 6747 1.407618 GGGCACCGATGTAAAAATCCC 59.592 52.381 0.00 0.00 40.86 3.85
5809 6748 2.863401 GGGCACCGATGTAAAAATCC 57.137 50.000 0.00 0.00 40.86 3.01
5823 6762 0.038310 AGCTAAGAAACCAGGGGCAC 59.962 55.000 0.00 0.00 0.00 5.01
5824 6763 0.328258 GAGCTAAGAAACCAGGGGCA 59.672 55.000 0.00 0.00 0.00 5.36
5825 6764 0.394488 GGAGCTAAGAAACCAGGGGC 60.394 60.000 0.00 0.00 0.00 5.80
5826 6765 0.991920 TGGAGCTAAGAAACCAGGGG 59.008 55.000 0.00 0.00 0.00 4.79
5827 6766 1.630878 AGTGGAGCTAAGAAACCAGGG 59.369 52.381 0.00 0.00 32.89 4.45
5828 6767 2.303022 TGAGTGGAGCTAAGAAACCAGG 59.697 50.000 0.00 0.00 32.89 4.45
5829 6768 3.685139 TGAGTGGAGCTAAGAAACCAG 57.315 47.619 0.00 0.00 32.89 4.00
5830 6769 3.055094 GGATGAGTGGAGCTAAGAAACCA 60.055 47.826 0.00 0.00 0.00 3.67
5831 6770 3.055094 TGGATGAGTGGAGCTAAGAAACC 60.055 47.826 0.00 0.00 0.00 3.27
5832 6771 4.207891 TGGATGAGTGGAGCTAAGAAAC 57.792 45.455 0.00 0.00 0.00 2.78
5833 6772 4.141620 GGATGGATGAGTGGAGCTAAGAAA 60.142 45.833 0.00 0.00 0.00 2.52
5834 6773 3.389329 GGATGGATGAGTGGAGCTAAGAA 59.611 47.826 0.00 0.00 0.00 2.52
5835 6774 2.968574 GGATGGATGAGTGGAGCTAAGA 59.031 50.000 0.00 0.00 0.00 2.10
5836 6775 2.038295 GGGATGGATGAGTGGAGCTAAG 59.962 54.545 0.00 0.00 0.00 2.18
5837 6776 2.050144 GGGATGGATGAGTGGAGCTAA 58.950 52.381 0.00 0.00 0.00 3.09
5838 6777 1.221523 AGGGATGGATGAGTGGAGCTA 59.778 52.381 0.00 0.00 0.00 3.32
5839 6778 0.030297 AGGGATGGATGAGTGGAGCT 60.030 55.000 0.00 0.00 0.00 4.09
5840 6779 1.346068 GTAGGGATGGATGAGTGGAGC 59.654 57.143 0.00 0.00 0.00 4.70
5841 6780 1.615883 CGTAGGGATGGATGAGTGGAG 59.384 57.143 0.00 0.00 0.00 3.86
5842 6781 1.704641 CGTAGGGATGGATGAGTGGA 58.295 55.000 0.00 0.00 0.00 4.02
5843 6782 0.034059 GCGTAGGGATGGATGAGTGG 59.966 60.000 0.00 0.00 0.00 4.00
5844 6783 1.000283 GAGCGTAGGGATGGATGAGTG 60.000 57.143 0.00 0.00 0.00 3.51
5845 6784 1.133325 AGAGCGTAGGGATGGATGAGT 60.133 52.381 0.00 0.00 0.00 3.41
5846 6785 1.626686 AGAGCGTAGGGATGGATGAG 58.373 55.000 0.00 0.00 0.00 2.90
5847 6786 2.088104 AAGAGCGTAGGGATGGATGA 57.912 50.000 0.00 0.00 0.00 2.92
5848 6787 3.322254 AGTTAAGAGCGTAGGGATGGATG 59.678 47.826 0.00 0.00 0.00 3.51
5849 6788 3.577919 AGTTAAGAGCGTAGGGATGGAT 58.422 45.455 0.00 0.00 0.00 3.41
5850 6789 3.028094 AGTTAAGAGCGTAGGGATGGA 57.972 47.619 0.00 0.00 0.00 3.41
5851 6790 3.821421 AAGTTAAGAGCGTAGGGATGG 57.179 47.619 0.00 0.00 0.00 3.51
5852 6791 4.201822 GCAAAAGTTAAGAGCGTAGGGATG 60.202 45.833 0.00 0.00 0.00 3.51
5853 6792 3.939592 GCAAAAGTTAAGAGCGTAGGGAT 59.060 43.478 0.00 0.00 0.00 3.85
5854 6793 3.007614 AGCAAAAGTTAAGAGCGTAGGGA 59.992 43.478 0.00 0.00 0.00 4.20
5855 6794 3.335579 AGCAAAAGTTAAGAGCGTAGGG 58.664 45.455 0.00 0.00 0.00 3.53
5856 6795 5.638234 ACTAAGCAAAAGTTAAGAGCGTAGG 59.362 40.000 0.00 0.00 40.14 3.18
5857 6796 6.707599 ACTAAGCAAAAGTTAAGAGCGTAG 57.292 37.500 0.00 0.00 41.10 3.51
5858 6797 7.486802 AAACTAAGCAAAAGTTAAGAGCGTA 57.513 32.000 0.00 0.00 36.17 4.42
5859 6798 6.373186 AAACTAAGCAAAAGTTAAGAGCGT 57.627 33.333 0.00 0.00 36.17 5.07
5860 6799 6.359883 GGAAAACTAAGCAAAAGTTAAGAGCG 59.640 38.462 0.00 0.00 36.17 5.03
5861 6800 6.641314 GGGAAAACTAAGCAAAAGTTAAGAGC 59.359 38.462 0.00 0.00 36.17 4.09
5862 6801 7.145985 GGGGAAAACTAAGCAAAAGTTAAGAG 58.854 38.462 0.00 0.00 36.17 2.85
5863 6802 6.608002 TGGGGAAAACTAAGCAAAAGTTAAGA 59.392 34.615 0.00 0.00 36.17 2.10
5864 6803 6.700081 GTGGGGAAAACTAAGCAAAAGTTAAG 59.300 38.462 0.00 0.00 36.17 1.85
5865 6804 6.381707 AGTGGGGAAAACTAAGCAAAAGTTAA 59.618 34.615 0.00 0.00 36.17 2.01
5866 6805 5.894964 AGTGGGGAAAACTAAGCAAAAGTTA 59.105 36.000 0.00 0.00 36.17 2.24
5867 6806 4.714802 AGTGGGGAAAACTAAGCAAAAGTT 59.285 37.500 0.00 0.00 38.82 2.66
5868 6807 4.286707 AGTGGGGAAAACTAAGCAAAAGT 58.713 39.130 0.00 0.00 0.00 2.66
5869 6808 4.262036 GGAGTGGGGAAAACTAAGCAAAAG 60.262 45.833 0.00 0.00 0.00 2.27
5870 6809 3.639561 GGAGTGGGGAAAACTAAGCAAAA 59.360 43.478 0.00 0.00 0.00 2.44
5871 6810 3.117284 AGGAGTGGGGAAAACTAAGCAAA 60.117 43.478 0.00 0.00 0.00 3.68
5872 6811 2.445525 AGGAGTGGGGAAAACTAAGCAA 59.554 45.455 0.00 0.00 0.00 3.91
5873 6812 2.062636 AGGAGTGGGGAAAACTAAGCA 58.937 47.619 0.00 0.00 0.00 3.91
5874 6813 2.881111 AGGAGTGGGGAAAACTAAGC 57.119 50.000 0.00 0.00 0.00 3.09
5875 6814 3.255888 GCAAAGGAGTGGGGAAAACTAAG 59.744 47.826 0.00 0.00 0.00 2.18
5876 6815 3.227614 GCAAAGGAGTGGGGAAAACTAA 58.772 45.455 0.00 0.00 0.00 2.24
5877 6816 2.490168 GGCAAAGGAGTGGGGAAAACTA 60.490 50.000 0.00 0.00 0.00 2.24
5878 6817 1.704641 GCAAAGGAGTGGGGAAAACT 58.295 50.000 0.00 0.00 0.00 2.66
5879 6818 0.679505 GGCAAAGGAGTGGGGAAAAC 59.320 55.000 0.00 0.00 0.00 2.43
5880 6819 0.471022 GGGCAAAGGAGTGGGGAAAA 60.471 55.000 0.00 0.00 0.00 2.29
5881 6820 1.155155 GGGCAAAGGAGTGGGGAAA 59.845 57.895 0.00 0.00 0.00 3.13
5882 6821 2.851045 GGGCAAAGGAGTGGGGAA 59.149 61.111 0.00 0.00 0.00 3.97
5883 6822 3.646715 CGGGCAAAGGAGTGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
5884 6823 2.706952 TTTCGGGCAAAGGAGTGGGG 62.707 60.000 0.00 0.00 0.00 4.96
5885 6824 1.228429 TTTCGGGCAAAGGAGTGGG 60.228 57.895 0.00 0.00 0.00 4.61
5886 6825 1.524008 GGTTTCGGGCAAAGGAGTGG 61.524 60.000 0.00 0.00 0.00 4.00
5887 6826 1.524008 GGGTTTCGGGCAAAGGAGTG 61.524 60.000 0.00 0.00 0.00 3.51
5888 6827 1.228459 GGGTTTCGGGCAAAGGAGT 60.228 57.895 0.00 0.00 0.00 3.85
5889 6828 0.960861 GAGGGTTTCGGGCAAAGGAG 60.961 60.000 0.00 0.00 0.00 3.69
5890 6829 1.074248 GAGGGTTTCGGGCAAAGGA 59.926 57.895 0.00 0.00 0.00 3.36
5891 6830 1.228429 TGAGGGTTTCGGGCAAAGG 60.228 57.895 0.00 0.00 0.00 3.11
5892 6831 0.250727 TCTGAGGGTTTCGGGCAAAG 60.251 55.000 0.00 0.00 32.69 2.77
5893 6832 0.183971 TTCTGAGGGTTTCGGGCAAA 59.816 50.000 0.00 0.00 32.69 3.68
5894 6833 0.250727 CTTCTGAGGGTTTCGGGCAA 60.251 55.000 0.00 0.00 32.69 4.52
5895 6834 1.125093 TCTTCTGAGGGTTTCGGGCA 61.125 55.000 0.00 0.00 32.69 5.36
5896 6835 0.391793 CTCTTCTGAGGGTTTCGGGC 60.392 60.000 0.00 0.00 36.70 6.13
5897 6836 3.842869 CTCTTCTGAGGGTTTCGGG 57.157 57.895 0.00 0.00 36.70 5.14
5906 6845 1.613925 TCCGTTGTGACCTCTTCTGAG 59.386 52.381 0.00 0.00 39.92 3.35
5907 6846 1.340248 GTCCGTTGTGACCTCTTCTGA 59.660 52.381 0.00 0.00 0.00 3.27
5908 6847 1.784525 GTCCGTTGTGACCTCTTCTG 58.215 55.000 0.00 0.00 0.00 3.02
5909 6848 0.314302 CGTCCGTTGTGACCTCTTCT 59.686 55.000 0.00 0.00 31.35 2.85
5910 6849 0.031721 ACGTCCGTTGTGACCTCTTC 59.968 55.000 0.00 0.00 31.35 2.87
5911 6850 0.031721 GACGTCCGTTGTGACCTCTT 59.968 55.000 3.51 0.00 31.35 2.85
5912 6851 1.658673 GACGTCCGTTGTGACCTCT 59.341 57.895 3.51 0.00 31.35 3.69
5913 6852 1.728426 CGACGTCCGTTGTGACCTC 60.728 63.158 10.58 0.00 31.35 3.85
5914 6853 2.333938 CGACGTCCGTTGTGACCT 59.666 61.111 10.58 0.00 31.35 3.85
5915 6854 3.400590 GCGACGTCCGTTGTGACC 61.401 66.667 10.58 0.00 41.15 4.02
5916 6855 2.354305 AGCGACGTCCGTTGTGAC 60.354 61.111 10.58 0.00 41.15 3.67
5917 6856 2.354188 CAGCGACGTCCGTTGTGA 60.354 61.111 10.58 0.00 43.20 3.58
5921 6860 4.695231 CCGACAGCGACGTCCGTT 62.695 66.667 10.58 0.20 40.82 4.44
5924 6863 2.862347 CTAACCCGACAGCGACGTCC 62.862 65.000 10.58 2.76 40.82 4.79
5925 6864 1.513586 CTAACCCGACAGCGACGTC 60.514 63.158 5.18 5.18 40.82 4.34
5926 6865 2.263741 ACTAACCCGACAGCGACGT 61.264 57.895 0.00 0.00 40.82 4.34
5927 6866 1.800315 CACTAACCCGACAGCGACG 60.800 63.158 0.00 0.00 40.82 5.12
5928 6867 2.092882 GCACTAACCCGACAGCGAC 61.093 63.158 0.00 0.00 40.82 5.19
5929 6868 1.812686 AAGCACTAACCCGACAGCGA 61.813 55.000 0.00 0.00 40.82 4.93
5930 6869 0.949105 AAAGCACTAACCCGACAGCG 60.949 55.000 0.00 0.00 37.24 5.18
5931 6870 0.517316 CAAAGCACTAACCCGACAGC 59.483 55.000 0.00 0.00 0.00 4.40
5932 6871 1.798813 GTCAAAGCACTAACCCGACAG 59.201 52.381 0.00 0.00 0.00 3.51
5933 6872 1.541670 GGTCAAAGCACTAACCCGACA 60.542 52.381 0.00 0.00 0.00 4.35
5934 6873 1.154197 GGTCAAAGCACTAACCCGAC 58.846 55.000 0.00 0.00 0.00 4.79
5935 6874 0.320073 CGGTCAAAGCACTAACCCGA 60.320 55.000 0.00 0.00 36.12 5.14
5936 6875 0.601841 ACGGTCAAAGCACTAACCCG 60.602 55.000 0.00 0.00 39.75 5.28
5937 6876 1.601166 AACGGTCAAAGCACTAACCC 58.399 50.000 0.00 0.00 0.00 4.11
5938 6877 3.811497 AGTTAACGGTCAAAGCACTAACC 59.189 43.478 0.00 0.00 0.00 2.85
5939 6878 4.748600 AGAGTTAACGGTCAAAGCACTAAC 59.251 41.667 0.00 0.00 0.00 2.34
5940 6879 4.748102 CAGAGTTAACGGTCAAAGCACTAA 59.252 41.667 0.00 0.00 0.00 2.24
5941 6880 4.038282 TCAGAGTTAACGGTCAAAGCACTA 59.962 41.667 0.00 0.00 0.00 2.74
5942 6881 3.131396 CAGAGTTAACGGTCAAAGCACT 58.869 45.455 0.00 0.00 0.00 4.40
5943 6882 3.059800 GTCAGAGTTAACGGTCAAAGCAC 60.060 47.826 0.00 0.00 0.00 4.40
5944 6883 3.128349 GTCAGAGTTAACGGTCAAAGCA 58.872 45.455 0.00 0.00 0.00 3.91
5945 6884 2.155155 CGTCAGAGTTAACGGTCAAAGC 59.845 50.000 0.00 0.00 35.32 3.51
5946 6885 3.635331 TCGTCAGAGTTAACGGTCAAAG 58.365 45.455 0.00 0.00 39.31 2.77
5947 6886 3.635331 CTCGTCAGAGTTAACGGTCAAA 58.365 45.455 0.00 0.00 39.60 2.69
5948 6887 3.278367 CTCGTCAGAGTTAACGGTCAA 57.722 47.619 0.00 0.00 39.60 3.18
5949 6888 2.983402 CTCGTCAGAGTTAACGGTCA 57.017 50.000 0.00 0.00 39.60 4.02
5974 6913 3.540367 AACTACACCCCCAACGCGG 62.540 63.158 12.47 0.00 0.00 6.46
5975 6914 2.031465 AACTACACCCCCAACGCG 59.969 61.111 3.53 3.53 0.00 6.01
5976 6915 0.820482 AACAACTACACCCCCAACGC 60.820 55.000 0.00 0.00 0.00 4.84
5977 6916 1.232119 GAACAACTACACCCCCAACG 58.768 55.000 0.00 0.00 0.00 4.10
5978 6917 2.351706 TGAACAACTACACCCCCAAC 57.648 50.000 0.00 0.00 0.00 3.77
5979 6918 2.657143 GTTGAACAACTACACCCCCAA 58.343 47.619 9.98 0.00 38.25 4.12
5980 6919 1.133730 GGTTGAACAACTACACCCCCA 60.134 52.381 15.60 0.00 40.94 4.96
5981 6920 1.612676 GGTTGAACAACTACACCCCC 58.387 55.000 15.60 0.00 40.94 5.40
5982 6921 1.232119 CGGTTGAACAACTACACCCC 58.768 55.000 15.60 0.00 40.94 4.95
5983 6922 1.957668 ACGGTTGAACAACTACACCC 58.042 50.000 15.60 0.00 40.94 4.61
5984 6923 2.032426 CCAACGGTTGAACAACTACACC 59.968 50.000 21.88 0.93 40.94 4.16
5985 6924 2.032426 CCCAACGGTTGAACAACTACAC 59.968 50.000 21.88 0.85 40.94 2.90
5986 6925 2.290464 CCCAACGGTTGAACAACTACA 58.710 47.619 21.88 0.00 40.94 2.74
5987 6926 1.002142 GCCCAACGGTTGAACAACTAC 60.002 52.381 21.88 1.77 40.94 2.73
5988 6927 1.134037 AGCCCAACGGTTGAACAACTA 60.134 47.619 21.88 0.00 40.94 2.24
5989 6928 0.395173 AGCCCAACGGTTGAACAACT 60.395 50.000 21.88 8.48 40.94 3.16
5990 6929 0.248866 CAGCCCAACGGTTGAACAAC 60.249 55.000 21.88 8.91 42.80 3.32
5991 6930 0.681564 ACAGCCCAACGGTTGAACAA 60.682 50.000 21.88 0.00 42.80 2.83
5992 6931 1.077357 ACAGCCCAACGGTTGAACA 60.077 52.632 21.88 0.00 42.80 3.18
5993 6932 1.652563 GACAGCCCAACGGTTGAAC 59.347 57.895 21.88 12.79 42.80 3.18
5994 6933 1.527380 GGACAGCCCAACGGTTGAA 60.527 57.895 21.88 0.00 42.80 2.69
5995 6934 2.112297 GGACAGCCCAACGGTTGA 59.888 61.111 21.88 0.00 42.80 3.18
6005 6944 1.135402 CGTTTAATGCAAGGGACAGCC 60.135 52.381 0.00 0.00 0.00 4.85
6006 6945 1.732405 GCGTTTAATGCAAGGGACAGC 60.732 52.381 4.06 0.00 0.00 4.40
6007 6946 1.135402 GGCGTTTAATGCAAGGGACAG 60.135 52.381 11.46 0.00 0.00 3.51
6008 6947 0.885196 GGCGTTTAATGCAAGGGACA 59.115 50.000 11.46 0.00 0.00 4.02
6009 6948 1.135402 CAGGCGTTTAATGCAAGGGAC 60.135 52.381 11.46 0.00 0.00 4.46
6010 6949 1.173043 CAGGCGTTTAATGCAAGGGA 58.827 50.000 11.46 0.00 0.00 4.20
6011 6950 0.458370 GCAGGCGTTTAATGCAAGGG 60.458 55.000 11.46 0.00 39.75 3.95
6012 6951 0.798009 CGCAGGCGTTTAATGCAAGG 60.798 55.000 11.46 1.05 39.97 3.61
6013 6952 1.405469 GCGCAGGCGTTTAATGCAAG 61.405 55.000 15.64 3.84 39.97 4.01
6014 6953 1.443533 GCGCAGGCGTTTAATGCAA 60.444 52.632 15.64 0.00 39.97 4.08
6015 6954 2.178025 GCGCAGGCGTTTAATGCA 59.822 55.556 15.64 0.00 39.97 3.96
6036 6975 4.379243 AGGCTTCTGTCGTGGCGG 62.379 66.667 0.00 0.00 0.00 6.13
6037 6976 3.114616 CAGGCTTCTGTCGTGGCG 61.115 66.667 0.00 0.00 33.96 5.69
6038 6977 2.507110 TAGCAGGCTTCTGTCGTGGC 62.507 60.000 0.00 0.00 40.51 5.01
6039 6978 0.176680 ATAGCAGGCTTCTGTCGTGG 59.823 55.000 0.00 0.00 40.51 4.94
6040 6979 1.284657 CATAGCAGGCTTCTGTCGTG 58.715 55.000 0.00 0.00 40.51 4.35
6041 6980 0.460987 GCATAGCAGGCTTCTGTCGT 60.461 55.000 0.00 0.00 40.51 4.34
6042 6981 0.460811 TGCATAGCAGGCTTCTGTCG 60.461 55.000 0.00 0.00 40.51 4.35
6043 6982 1.602851 CATGCATAGCAGGCTTCTGTC 59.397 52.381 0.00 0.00 43.65 3.51
6044 6983 1.676746 CATGCATAGCAGGCTTCTGT 58.323 50.000 0.00 0.00 43.65 3.41
6051 6990 1.038681 TTGGGTGCATGCATAGCAGG 61.039 55.000 25.64 0.00 43.65 4.85
6052 6991 0.101759 GTTGGGTGCATGCATAGCAG 59.898 55.000 25.64 1.13 43.65 4.24
6053 6992 0.611340 TGTTGGGTGCATGCATAGCA 60.611 50.000 25.64 17.66 44.86 3.49
6054 6993 0.531657 TTGTTGGGTGCATGCATAGC 59.468 50.000 25.64 15.34 0.00 2.97
6055 6994 2.029200 TGTTTGTTGGGTGCATGCATAG 60.029 45.455 25.64 0.00 0.00 2.23
6056 6995 1.966354 TGTTTGTTGGGTGCATGCATA 59.034 42.857 25.64 10.90 0.00 3.14
6057 6996 0.757512 TGTTTGTTGGGTGCATGCAT 59.242 45.000 25.64 0.00 0.00 3.96
6058 6997 0.757512 ATGTTTGTTGGGTGCATGCA 59.242 45.000 18.46 18.46 0.00 3.96
6059 6998 1.149987 CATGTTTGTTGGGTGCATGC 58.850 50.000 11.82 11.82 32.03 4.06
6060 6999 1.149987 GCATGTTTGTTGGGTGCATG 58.850 50.000 0.00 0.00 39.68 4.06
6061 7000 0.035176 GGCATGTTTGTTGGGTGCAT 59.965 50.000 0.00 0.00 37.53 3.96
6062 7001 1.047596 AGGCATGTTTGTTGGGTGCA 61.048 50.000 0.00 0.00 37.53 4.57
6063 7002 0.600782 CAGGCATGTTTGTTGGGTGC 60.601 55.000 0.00 0.00 35.17 5.01
6064 7003 0.600782 GCAGGCATGTTTGTTGGGTG 60.601 55.000 0.00 0.00 0.00 4.61
6065 7004 1.047596 TGCAGGCATGTTTGTTGGGT 61.048 50.000 0.00 0.00 0.00 4.51
6066 7005 0.322322 ATGCAGGCATGTTTGTTGGG 59.678 50.000 5.87 0.00 35.03 4.12
6067 7006 1.434555 CATGCAGGCATGTTTGTTGG 58.565 50.000 22.73 0.00 46.20 3.77
6076 7015 1.956802 CATCATCGCATGCAGGCAT 59.043 52.632 24.53 12.85 37.08 4.40
6077 7016 3.427670 CATCATCGCATGCAGGCA 58.572 55.556 24.53 10.98 0.00 4.75
6087 7026 4.923710 TCGGTCGGCGCATCATCG 62.924 66.667 10.83 3.98 0.00 3.84
6088 7027 3.032609 CTCGGTCGGCGCATCATC 61.033 66.667 10.83 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.