Multiple sequence alignment - TraesCS1D01G154500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G154500 chr1D 100.000 2339 0 0 1 2339 216023920 216021582 0.000000e+00 4320
1 TraesCS1D01G154500 chr1D 80.763 603 95 14 1403 1990 6670127 6670723 3.540000e-123 451
2 TraesCS1D01G154500 chr2D 88.192 1355 152 8 1 1352 574398711 574397362 0.000000e+00 1609
3 TraesCS1D01G154500 chr2D 84.541 207 17 9 1358 1549 333218886 333219092 8.530000e-45 191
4 TraesCS1D01G154500 chr6D 87.801 1369 157 8 1 1364 48683474 48682111 0.000000e+00 1594
5 TraesCS1D01G154500 chr6D 86.906 1367 176 3 1 1364 158872463 158871097 0.000000e+00 1530
6 TraesCS1D01G154500 chr6D 82.946 645 77 21 1364 1994 390840150 390840775 3.400000e-153 551
7 TraesCS1D01G154500 chr3D 87.906 1356 154 7 1 1352 300565480 300566829 0.000000e+00 1587
8 TraesCS1D01G154500 chr3D 87.652 656 59 11 1355 1994 445753370 445754019 0.000000e+00 743
9 TraesCS1D01G154500 chr3D 87.727 440 38 8 1447 1872 97567019 97566582 1.250000e-137 499
10 TraesCS1D01G154500 chr7B 87.482 1366 166 5 1 1362 651392885 651391521 0.000000e+00 1570
11 TraesCS1D01G154500 chr7B 81.579 646 91 11 1358 1989 679847022 679846391 2.070000e-140 508
12 TraesCS1D01G154500 chr3A 87.189 1366 169 6 1 1362 211951695 211953058 0.000000e+00 1548
13 TraesCS1D01G154500 chr7D 87.144 1369 167 9 1 1365 439710638 439709275 0.000000e+00 1544
14 TraesCS1D01G154500 chr7D 80.261 613 98 16 1395 1990 562241393 562240787 7.670000e-120 440
15 TraesCS1D01G154500 chr5D 87.161 1363 169 6 2 1359 117351131 117352492 0.000000e+00 1543
16 TraesCS1D01G154500 chr5D 82.594 609 70 13 1358 1939 548859032 548859631 2.680000e-139 505
17 TraesCS1D01G154500 chr2A 87.296 1346 157 12 1 1342 470230653 470231988 0.000000e+00 1526
18 TraesCS1D01G154500 chr5B 85.219 663 66 14 1358 1990 12656988 12656328 0.000000e+00 652
19 TraesCS1D01G154500 chr5B 80.675 652 96 15 1361 1985 679667996 679667348 1.630000e-131 479
20 TraesCS1D01G154500 chr1B 84.337 664 76 15 1358 1994 614682338 614681676 1.970000e-175 625
21 TraesCS1D01G154500 chr1B 84.395 314 28 11 2028 2339 308912577 308912283 2.940000e-74 289
22 TraesCS1D01G154500 chr2B 83.025 648 87 16 1358 1987 788360663 788361305 1.210000e-157 566
23 TraesCS1D01G154500 chr2B 83.025 648 87 16 1358 1987 788414041 788414683 1.210000e-157 566
24 TraesCS1D01G154500 chr2B 82.796 651 89 16 1358 1990 788302327 788301682 5.640000e-156 560
25 TraesCS1D01G154500 chr2B 82.870 648 88 16 1358 1987 788383683 788384325 5.640000e-156 560
26 TraesCS1D01G154500 chr2B 79.550 533 72 22 1358 1870 10705052 10705567 1.720000e-91 346
27 TraesCS1D01G154500 chr1A 89.373 367 11 7 1993 2339 276579556 276579198 9.920000e-119 436
28 TraesCS1D01G154500 chr4A 86.339 366 39 9 1627 1988 668361035 668360677 2.820000e-104 388
29 TraesCS1D01G154500 chr6A 84.925 398 34 12 1358 1729 614780379 614780776 1.700000e-101 379
30 TraesCS1D01G154500 chrUn 80.702 456 69 10 1548 1988 350741824 350741373 1.040000e-88 337
31 TraesCS1D01G154500 chr3B 81.159 276 39 7 1426 1689 758067770 758068044 2.360000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G154500 chr1D 216021582 216023920 2338 True 4320 4320 100.000 1 2339 1 chr1D.!!$R1 2338
1 TraesCS1D01G154500 chr1D 6670127 6670723 596 False 451 451 80.763 1403 1990 1 chr1D.!!$F1 587
2 TraesCS1D01G154500 chr2D 574397362 574398711 1349 True 1609 1609 88.192 1 1352 1 chr2D.!!$R1 1351
3 TraesCS1D01G154500 chr6D 48682111 48683474 1363 True 1594 1594 87.801 1 1364 1 chr6D.!!$R1 1363
4 TraesCS1D01G154500 chr6D 158871097 158872463 1366 True 1530 1530 86.906 1 1364 1 chr6D.!!$R2 1363
5 TraesCS1D01G154500 chr6D 390840150 390840775 625 False 551 551 82.946 1364 1994 1 chr6D.!!$F1 630
6 TraesCS1D01G154500 chr3D 300565480 300566829 1349 False 1587 1587 87.906 1 1352 1 chr3D.!!$F1 1351
7 TraesCS1D01G154500 chr3D 445753370 445754019 649 False 743 743 87.652 1355 1994 1 chr3D.!!$F2 639
8 TraesCS1D01G154500 chr7B 651391521 651392885 1364 True 1570 1570 87.482 1 1362 1 chr7B.!!$R1 1361
9 TraesCS1D01G154500 chr7B 679846391 679847022 631 True 508 508 81.579 1358 1989 1 chr7B.!!$R2 631
10 TraesCS1D01G154500 chr3A 211951695 211953058 1363 False 1548 1548 87.189 1 1362 1 chr3A.!!$F1 1361
11 TraesCS1D01G154500 chr7D 439709275 439710638 1363 True 1544 1544 87.144 1 1365 1 chr7D.!!$R1 1364
12 TraesCS1D01G154500 chr7D 562240787 562241393 606 True 440 440 80.261 1395 1990 1 chr7D.!!$R2 595
13 TraesCS1D01G154500 chr5D 117351131 117352492 1361 False 1543 1543 87.161 2 1359 1 chr5D.!!$F1 1357
14 TraesCS1D01G154500 chr5D 548859032 548859631 599 False 505 505 82.594 1358 1939 1 chr5D.!!$F2 581
15 TraesCS1D01G154500 chr2A 470230653 470231988 1335 False 1526 1526 87.296 1 1342 1 chr2A.!!$F1 1341
16 TraesCS1D01G154500 chr5B 12656328 12656988 660 True 652 652 85.219 1358 1990 1 chr5B.!!$R1 632
17 TraesCS1D01G154500 chr5B 679667348 679667996 648 True 479 479 80.675 1361 1985 1 chr5B.!!$R2 624
18 TraesCS1D01G154500 chr1B 614681676 614682338 662 True 625 625 84.337 1358 1994 1 chr1B.!!$R2 636
19 TraesCS1D01G154500 chr2B 788360663 788361305 642 False 566 566 83.025 1358 1987 1 chr2B.!!$F2 629
20 TraesCS1D01G154500 chr2B 788414041 788414683 642 False 566 566 83.025 1358 1987 1 chr2B.!!$F4 629
21 TraesCS1D01G154500 chr2B 788301682 788302327 645 True 560 560 82.796 1358 1990 1 chr2B.!!$R1 632
22 TraesCS1D01G154500 chr2B 788383683 788384325 642 False 560 560 82.870 1358 1987 1 chr2B.!!$F3 629
23 TraesCS1D01G154500 chr2B 10705052 10705567 515 False 346 346 79.550 1358 1870 1 chr2B.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 284 0.174845 CGGTCCGTTCAGCCTATTCA 59.825 55.0 2.08 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2226 0.024491 CGACGTGTGTGTGTGTGTTC 59.976 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.601047 TGGACATAACATCAATATTTGGGAAA 57.399 30.769 0.00 0.00 0.00 3.13
115 116 6.318144 TCTGTTAACTAAGGTAGGTGATCTCG 59.682 42.308 7.22 0.00 0.00 4.04
180 181 2.564771 ACTATGTGGCCAATCGATGTG 58.435 47.619 7.24 0.00 0.00 3.21
266 269 6.839820 ACGAAAAATGGTATATTCTCGGTC 57.160 37.500 0.00 0.00 0.00 4.79
269 272 4.950205 AAATGGTATATTCTCGGTCCGT 57.050 40.909 11.88 0.00 0.00 4.69
281 284 0.174845 CGGTCCGTTCAGCCTATTCA 59.825 55.000 2.08 0.00 0.00 2.57
340 343 1.352352 CTCTAATGGGATGGGGCGAAT 59.648 52.381 0.00 0.00 0.00 3.34
359 362 6.260050 GGCGAATCACAGTTAATCCTATTTGA 59.740 38.462 0.00 0.00 0.00 2.69
462 466 7.022384 CAGGTAACGCTAGCTAATAGACATAC 58.978 42.308 13.93 3.94 46.39 2.39
511 516 6.173339 TGCTTTGAGGGTTTAGAAGATACAG 58.827 40.000 0.00 0.00 0.00 2.74
532 537 2.315925 ACATATGCTCTTCCGGTGTG 57.684 50.000 0.00 0.00 0.00 3.82
539 544 1.270678 GCTCTTCCGGTGTGGTAAAGT 60.271 52.381 0.00 0.00 39.52 2.66
540 545 2.413837 CTCTTCCGGTGTGGTAAAGTG 58.586 52.381 0.00 0.00 39.52 3.16
553 558 2.904434 GGTAAAGTGAAGGAGGTCTGGA 59.096 50.000 0.00 0.00 0.00 3.86
573 581 0.259938 AAAGGCTGGGGATGGATGAC 59.740 55.000 0.00 0.00 0.00 3.06
613 621 4.373116 TTGACCGTGCGGGAGAGC 62.373 66.667 15.44 0.02 39.97 4.09
691 700 3.622612 CCACAATGTGCGTGAGATGATTA 59.377 43.478 8.05 0.00 36.43 1.75
696 705 6.201615 ACAATGTGCGTGAGATGATTACTATG 59.798 38.462 0.00 0.00 0.00 2.23
705 714 7.649306 CGTGAGATGATTACTATGTCAACATGA 59.351 37.037 0.00 0.00 37.15 3.07
753 766 6.525121 TTGATACACAACGAGAAAACTCAG 57.475 37.500 0.00 0.00 33.18 3.35
766 779 4.518211 AGAAAACTCAGAATGCAACTCAGG 59.482 41.667 0.00 0.00 34.76 3.86
817 830 9.165035 CCACAAAATTTGTTAATGCATTATCCT 57.835 29.630 19.51 4.67 43.23 3.24
843 856 2.093128 GGCGTCTATGAAAAAGGAGGGA 60.093 50.000 0.00 0.00 0.00 4.20
894 907 8.679385 GTTAAACTTAACGTTGATGCTTCTTTC 58.321 33.333 11.99 0.00 35.61 2.62
950 963 3.449018 GTCCTTAGAGATGACAGAGGCAA 59.551 47.826 0.00 0.00 0.00 4.52
1109 1124 6.545567 TGGAGGTGATTGATAATATGCATGT 58.454 36.000 10.16 0.00 0.00 3.21
1120 1135 0.752743 TATGCATGTTGGAGGGCAGC 60.753 55.000 10.16 0.00 39.95 5.25
1188 1203 4.260375 GCATGTGATTTCGTTACTGCTAGG 60.260 45.833 0.00 0.00 0.00 3.02
1266 1282 9.778741 TTAGCTAGATTTTCTTTGACTTCTGAA 57.221 29.630 0.00 0.00 0.00 3.02
1271 1287 8.924511 AGATTTTCTTTGACTTCTGAATGGTA 57.075 30.769 0.00 0.00 0.00 3.25
1272 1288 8.787852 AGATTTTCTTTGACTTCTGAATGGTAC 58.212 33.333 0.00 0.00 0.00 3.34
1288 1304 7.622713 TGAATGGTACGAGGAACCTTTAAATA 58.377 34.615 0.00 0.00 37.91 1.40
1649 1720 2.364972 CCAGACCTTGGGTTTTCACT 57.635 50.000 0.00 0.00 43.75 3.41
1700 1771 2.102925 CACCACCAAAATTGCAGACCTT 59.897 45.455 0.00 0.00 0.00 3.50
1758 1830 2.890311 CAATCCACCAAACACCTAGCAA 59.110 45.455 0.00 0.00 0.00 3.91
1807 1879 1.019278 TCGCCAACGCTTCAAGATCC 61.019 55.000 0.00 0.00 39.84 3.36
1931 2004 1.593196 CCTTTCTGAAGCCGTGTTGA 58.407 50.000 0.00 0.00 0.00 3.18
1944 2017 5.242434 AGCCGTGTTGACTGATAACATAAA 58.758 37.500 0.00 0.00 39.88 1.40
1974 2047 3.604875 AACGAAGCCTTTCCGATCTAA 57.395 42.857 0.00 0.00 0.00 2.10
1990 2064 4.560716 CGATCTAAATATCAGGGGCGACAA 60.561 45.833 0.00 0.00 0.00 3.18
1994 2068 0.321671 ATATCAGGGGCGACAATCGG 59.678 55.000 0.00 0.00 40.84 4.18
2002 2076 2.750815 GCGACAATCGGCAGTTAGT 58.249 52.632 0.00 0.00 40.84 2.24
2003 2077 1.076332 GCGACAATCGGCAGTTAGTT 58.924 50.000 0.00 0.00 40.84 2.24
2004 2078 1.463444 GCGACAATCGGCAGTTAGTTT 59.537 47.619 0.00 0.00 40.84 2.66
2005 2079 2.724839 GCGACAATCGGCAGTTAGTTTG 60.725 50.000 0.00 0.00 40.84 2.93
2006 2080 2.478894 CGACAATCGGCAGTTAGTTTGT 59.521 45.455 0.00 0.00 36.00 2.83
2007 2081 3.423123 CGACAATCGGCAGTTAGTTTGTC 60.423 47.826 0.00 0.00 40.70 3.18
2008 2082 3.472652 ACAATCGGCAGTTAGTTTGTCA 58.527 40.909 0.00 0.00 0.00 3.58
2009 2083 3.250040 ACAATCGGCAGTTAGTTTGTCAC 59.750 43.478 0.00 0.00 0.00 3.67
2010 2084 2.902705 TCGGCAGTTAGTTTGTCACT 57.097 45.000 0.00 0.00 39.87 3.41
2011 2085 2.479837 TCGGCAGTTAGTTTGTCACTG 58.520 47.619 0.00 0.00 40.86 3.66
2012 2086 2.159014 TCGGCAGTTAGTTTGTCACTGT 60.159 45.455 0.00 0.00 40.17 3.55
2013 2087 2.032894 CGGCAGTTAGTTTGTCACTGTG 60.033 50.000 0.17 0.17 40.17 3.66
2014 2088 3.202906 GGCAGTTAGTTTGTCACTGTGA 58.797 45.455 6.36 6.36 40.17 3.58
2015 2089 3.815401 GGCAGTTAGTTTGTCACTGTGAT 59.185 43.478 14.37 0.00 40.17 3.06
2016 2090 4.083802 GGCAGTTAGTTTGTCACTGTGATC 60.084 45.833 14.37 8.38 40.17 2.92
2017 2091 4.376413 GCAGTTAGTTTGTCACTGTGATCG 60.376 45.833 14.37 0.00 40.17 3.69
2018 2092 4.150627 CAGTTAGTTTGTCACTGTGATCGG 59.849 45.833 14.37 0.00 35.97 4.18
2019 2093 2.169832 AGTTTGTCACTGTGATCGGG 57.830 50.000 14.37 0.00 32.83 5.14
2020 2094 1.156736 GTTTGTCACTGTGATCGGGG 58.843 55.000 14.37 0.00 0.00 5.73
2021 2095 1.052617 TTTGTCACTGTGATCGGGGA 58.947 50.000 14.37 0.00 0.00 4.81
2022 2096 0.608130 TTGTCACTGTGATCGGGGAG 59.392 55.000 14.37 0.00 32.47 4.30
2023 2097 0.541998 TGTCACTGTGATCGGGGAGT 60.542 55.000 14.37 0.00 32.47 3.85
2024 2098 0.608640 GTCACTGTGATCGGGGAGTT 59.391 55.000 14.37 0.00 32.47 3.01
2025 2099 1.822990 GTCACTGTGATCGGGGAGTTA 59.177 52.381 14.37 0.00 32.47 2.24
2026 2100 2.431057 GTCACTGTGATCGGGGAGTTAT 59.569 50.000 14.37 0.00 32.47 1.89
2027 2101 3.104512 TCACTGTGATCGGGGAGTTATT 58.895 45.455 6.36 0.00 0.00 1.40
2028 2102 3.132289 TCACTGTGATCGGGGAGTTATTC 59.868 47.826 6.36 0.00 0.00 1.75
2029 2103 3.133003 CACTGTGATCGGGGAGTTATTCT 59.867 47.826 0.32 0.00 0.00 2.40
2030 2104 4.341235 CACTGTGATCGGGGAGTTATTCTA 59.659 45.833 0.32 0.00 0.00 2.10
2031 2105 4.960469 ACTGTGATCGGGGAGTTATTCTAA 59.040 41.667 0.00 0.00 0.00 2.10
2032 2106 5.163437 ACTGTGATCGGGGAGTTATTCTAAC 60.163 44.000 0.00 0.00 0.00 2.34
2033 2107 4.100498 TGTGATCGGGGAGTTATTCTAACC 59.900 45.833 0.00 0.00 0.00 2.85
2034 2108 4.100498 GTGATCGGGGAGTTATTCTAACCA 59.900 45.833 0.00 0.00 0.00 3.67
2035 2109 4.717778 TGATCGGGGAGTTATTCTAACCAA 59.282 41.667 0.00 0.00 0.00 3.67
2036 2110 5.190132 TGATCGGGGAGTTATTCTAACCAAA 59.810 40.000 0.00 0.00 0.00 3.28
2037 2111 4.835678 TCGGGGAGTTATTCTAACCAAAC 58.164 43.478 0.00 0.00 0.00 2.93
2038 2112 4.286549 TCGGGGAGTTATTCTAACCAAACA 59.713 41.667 0.00 0.00 0.00 2.83
2039 2113 5.005094 CGGGGAGTTATTCTAACCAAACAA 58.995 41.667 0.00 0.00 0.00 2.83
2040 2114 5.123344 CGGGGAGTTATTCTAACCAAACAAG 59.877 44.000 0.00 0.00 0.00 3.16
2041 2115 5.417894 GGGGAGTTATTCTAACCAAACAAGG 59.582 44.000 0.00 0.00 0.00 3.61
2042 2116 5.105877 GGGAGTTATTCTAACCAAACAAGGC 60.106 44.000 0.00 0.00 0.00 4.35
2043 2117 5.105877 GGAGTTATTCTAACCAAACAAGGCC 60.106 44.000 0.00 0.00 0.00 5.19
2044 2118 5.641155 AGTTATTCTAACCAAACAAGGCCT 58.359 37.500 0.00 0.00 0.00 5.19
2045 2119 5.710567 AGTTATTCTAACCAAACAAGGCCTC 59.289 40.000 5.23 0.00 0.00 4.70
2046 2120 3.586470 TTCTAACCAAACAAGGCCTCA 57.414 42.857 5.23 0.00 0.00 3.86
2047 2121 3.586470 TCTAACCAAACAAGGCCTCAA 57.414 42.857 5.23 0.00 0.00 3.02
2048 2122 3.486383 TCTAACCAAACAAGGCCTCAAG 58.514 45.455 5.23 1.18 0.00 3.02
2049 2123 1.413118 AACCAAACAAGGCCTCAAGG 58.587 50.000 5.23 6.94 38.53 3.61
2050 2124 0.555769 ACCAAACAAGGCCTCAAGGA 59.444 50.000 5.23 0.00 37.39 3.36
2051 2125 0.961753 CCAAACAAGGCCTCAAGGAC 59.038 55.000 5.23 0.00 46.16 3.85
2057 2131 4.452733 GGCCTCAAGGACGACCCG 62.453 72.222 0.00 0.00 40.87 5.28
2058 2132 3.379445 GCCTCAAGGACGACCCGA 61.379 66.667 0.00 0.00 40.87 5.14
2059 2133 2.572284 CCTCAAGGACGACCCGAC 59.428 66.667 0.00 0.00 40.87 4.79
2060 2134 2.178521 CTCAAGGACGACCCGACG 59.821 66.667 0.00 0.00 40.87 5.12
2062 2136 2.430244 CAAGGACGACCCGACGTG 60.430 66.667 0.00 0.00 46.52 4.49
2063 2137 3.677648 AAGGACGACCCGACGTGG 61.678 66.667 0.00 0.00 46.52 4.94
2064 2138 4.648626 AGGACGACCCGACGTGGA 62.649 66.667 0.00 0.00 46.52 4.02
2065 2139 3.446570 GGACGACCCGACGTGGAT 61.447 66.667 0.00 0.00 46.52 3.41
2066 2140 2.570181 GACGACCCGACGTGGATT 59.430 61.111 0.00 0.00 46.52 3.01
2067 2141 1.656818 GGACGACCCGACGTGGATTA 61.657 60.000 0.00 0.00 46.52 1.75
2068 2142 0.248377 GACGACCCGACGTGGATTAG 60.248 60.000 0.00 0.00 46.52 1.73
2069 2143 1.588139 CGACCCGACGTGGATTAGC 60.588 63.158 0.00 0.00 42.00 3.09
2070 2144 1.814527 GACCCGACGTGGATTAGCT 59.185 57.895 0.00 0.00 42.00 3.32
2071 2145 0.527817 GACCCGACGTGGATTAGCTG 60.528 60.000 0.00 0.00 42.00 4.24
2072 2146 1.227263 CCCGACGTGGATTAGCTGG 60.227 63.158 0.00 0.00 42.00 4.85
2073 2147 1.672854 CCCGACGTGGATTAGCTGGA 61.673 60.000 0.00 0.00 42.00 3.86
2074 2148 0.249073 CCGACGTGGATTAGCTGGAG 60.249 60.000 0.00 0.00 42.00 3.86
2075 2149 0.249073 CGACGTGGATTAGCTGGAGG 60.249 60.000 0.00 0.00 0.00 4.30
2076 2150 1.112113 GACGTGGATTAGCTGGAGGA 58.888 55.000 0.00 0.00 0.00 3.71
2077 2151 1.480954 GACGTGGATTAGCTGGAGGAA 59.519 52.381 0.00 0.00 0.00 3.36
2078 2152 1.207329 ACGTGGATTAGCTGGAGGAAC 59.793 52.381 0.00 0.00 0.00 3.62
2079 2153 1.802880 CGTGGATTAGCTGGAGGAACG 60.803 57.143 0.00 0.00 0.00 3.95
2080 2154 1.207329 GTGGATTAGCTGGAGGAACGT 59.793 52.381 0.00 0.00 0.00 3.99
2081 2155 1.207089 TGGATTAGCTGGAGGAACGTG 59.793 52.381 0.00 0.00 0.00 4.49
2082 2156 1.291132 GATTAGCTGGAGGAACGTGC 58.709 55.000 0.00 0.00 0.00 5.34
2083 2157 0.460284 ATTAGCTGGAGGAACGTGCG 60.460 55.000 0.00 0.00 0.00 5.34
2084 2158 1.812686 TTAGCTGGAGGAACGTGCGT 61.813 55.000 0.00 0.00 0.00 5.24
2085 2159 0.961857 TAGCTGGAGGAACGTGCGTA 60.962 55.000 0.00 0.00 0.00 4.42
2086 2160 2.092882 GCTGGAGGAACGTGCGTAC 61.093 63.158 0.00 0.00 0.00 3.67
2095 2169 2.657296 CGTGCGTACGCCCTATGG 60.657 66.667 35.11 14.98 44.11 2.74
2096 2170 2.497770 GTGCGTACGCCCTATGGT 59.502 61.111 35.11 0.00 41.09 3.55
2098 2172 2.965462 GCGTACGCCCTATGGTGC 60.965 66.667 29.51 0.00 46.63 5.01
2099 2173 2.812499 CGTACGCCCTATGGTGCT 59.188 61.111 0.52 0.00 46.63 4.40
2100 2174 1.143183 CGTACGCCCTATGGTGCTT 59.857 57.895 0.52 0.00 46.63 3.91
2101 2175 0.386476 CGTACGCCCTATGGTGCTTA 59.614 55.000 0.52 0.00 46.63 3.09
2102 2176 1.000506 CGTACGCCCTATGGTGCTTAT 59.999 52.381 0.52 0.00 46.63 1.73
2103 2177 2.685100 GTACGCCCTATGGTGCTTATC 58.315 52.381 0.00 0.00 46.63 1.75
2104 2178 0.396811 ACGCCCTATGGTGCTTATCC 59.603 55.000 0.00 0.00 46.63 2.59
2105 2179 0.670546 CGCCCTATGGTGCTTATCCG 60.671 60.000 0.00 0.00 34.85 4.18
2106 2180 0.685097 GCCCTATGGTGCTTATCCGA 59.315 55.000 0.00 0.00 0.00 4.55
2107 2181 1.279271 GCCCTATGGTGCTTATCCGAT 59.721 52.381 0.00 0.00 0.00 4.18
2108 2182 2.290323 GCCCTATGGTGCTTATCCGATT 60.290 50.000 0.00 0.00 0.00 3.34
2109 2183 3.600388 CCCTATGGTGCTTATCCGATTC 58.400 50.000 0.00 0.00 0.00 2.52
2110 2184 3.007940 CCCTATGGTGCTTATCCGATTCA 59.992 47.826 0.00 0.00 0.00 2.57
2111 2185 4.248859 CCTATGGTGCTTATCCGATTCAG 58.751 47.826 0.00 0.00 0.00 3.02
2112 2186 3.845781 ATGGTGCTTATCCGATTCAGT 57.154 42.857 0.00 0.00 0.00 3.41
2113 2187 3.627395 TGGTGCTTATCCGATTCAGTT 57.373 42.857 0.00 0.00 0.00 3.16
2114 2188 3.270027 TGGTGCTTATCCGATTCAGTTG 58.730 45.455 0.00 0.00 0.00 3.16
2115 2189 3.270877 GGTGCTTATCCGATTCAGTTGT 58.729 45.455 0.00 0.00 0.00 3.32
2116 2190 3.063997 GGTGCTTATCCGATTCAGTTGTG 59.936 47.826 0.00 0.00 0.00 3.33
2117 2191 3.932710 GTGCTTATCCGATTCAGTTGTGA 59.067 43.478 0.00 0.00 0.00 3.58
2118 2192 4.033358 GTGCTTATCCGATTCAGTTGTGAG 59.967 45.833 0.00 0.00 32.98 3.51
2119 2193 4.184629 GCTTATCCGATTCAGTTGTGAGT 58.815 43.478 0.00 0.00 32.98 3.41
2120 2194 4.033358 GCTTATCCGATTCAGTTGTGAGTG 59.967 45.833 0.00 0.00 32.98 3.51
2121 2195 1.795768 TCCGATTCAGTTGTGAGTGC 58.204 50.000 0.00 0.00 32.98 4.40
2122 2196 1.069978 TCCGATTCAGTTGTGAGTGCA 59.930 47.619 0.00 0.00 32.98 4.57
2123 2197 1.462283 CCGATTCAGTTGTGAGTGCAG 59.538 52.381 0.00 0.00 32.98 4.41
2124 2198 2.407090 CGATTCAGTTGTGAGTGCAGA 58.593 47.619 0.00 0.00 32.98 4.26
2125 2199 2.411069 CGATTCAGTTGTGAGTGCAGAG 59.589 50.000 0.00 0.00 32.98 3.35
2126 2200 2.988010 TTCAGTTGTGAGTGCAGAGT 57.012 45.000 0.00 0.00 32.98 3.24
2127 2201 2.229675 TCAGTTGTGAGTGCAGAGTG 57.770 50.000 0.00 0.00 0.00 3.51
2128 2202 0.585357 CAGTTGTGAGTGCAGAGTGC 59.415 55.000 0.00 0.00 45.29 4.40
2129 2203 5.798774 TTCAGTTGTGAGTGCAGAGTGCA 62.799 47.826 0.00 0.00 42.10 4.57
2138 2212 2.664851 CAGAGTGCACCGCCGAAA 60.665 61.111 14.63 0.00 0.00 3.46
2139 2213 2.665185 AGAGTGCACCGCCGAAAC 60.665 61.111 14.63 0.00 0.00 2.78
2140 2214 4.072088 GAGTGCACCGCCGAAACG 62.072 66.667 14.63 0.00 0.00 3.60
2151 2225 2.093983 CGAAACGGAGCGCGAAAG 59.906 61.111 12.10 0.00 0.00 2.62
2152 2226 2.474712 GAAACGGAGCGCGAAAGG 59.525 61.111 12.10 0.00 0.00 3.11
2153 2227 2.025418 GAAACGGAGCGCGAAAGGA 61.025 57.895 12.10 0.00 0.00 3.36
2154 2228 1.562575 GAAACGGAGCGCGAAAGGAA 61.563 55.000 12.10 0.00 0.00 3.36
2155 2229 1.838568 AAACGGAGCGCGAAAGGAAC 61.839 55.000 12.10 0.00 0.00 3.62
2156 2230 2.736995 CGGAGCGCGAAAGGAACA 60.737 61.111 12.10 0.00 0.00 3.18
2157 2231 2.861006 GGAGCGCGAAAGGAACAC 59.139 61.111 12.10 0.00 0.00 3.32
2158 2232 1.959226 GGAGCGCGAAAGGAACACA 60.959 57.895 12.10 0.00 0.00 3.72
2159 2233 1.204312 GAGCGCGAAAGGAACACAC 59.796 57.895 12.10 0.00 0.00 3.82
2160 2234 1.495584 GAGCGCGAAAGGAACACACA 61.496 55.000 12.10 0.00 0.00 3.72
2161 2235 1.368850 GCGCGAAAGGAACACACAC 60.369 57.895 12.10 0.00 0.00 3.82
2162 2236 2.010670 CGCGAAAGGAACACACACA 58.989 52.632 0.00 0.00 0.00 3.72
2163 2237 0.315869 CGCGAAAGGAACACACACAC 60.316 55.000 0.00 0.00 0.00 3.82
2164 2238 0.730265 GCGAAAGGAACACACACACA 59.270 50.000 0.00 0.00 0.00 3.72
2165 2239 1.531058 GCGAAAGGAACACACACACAC 60.531 52.381 0.00 0.00 0.00 3.82
2166 2240 1.735018 CGAAAGGAACACACACACACA 59.265 47.619 0.00 0.00 0.00 3.72
2167 2241 2.475519 CGAAAGGAACACACACACACAC 60.476 50.000 0.00 0.00 0.00 3.82
2168 2242 1.083489 AAGGAACACACACACACACG 58.917 50.000 0.00 0.00 0.00 4.49
2169 2243 0.036765 AGGAACACACACACACACGT 60.037 50.000 0.00 0.00 0.00 4.49
2170 2244 0.372334 GGAACACACACACACACGTC 59.628 55.000 0.00 0.00 0.00 4.34
2171 2245 0.024491 GAACACACACACACACGTCG 59.976 55.000 0.00 0.00 0.00 5.12
2172 2246 0.388778 AACACACACACACACGTCGA 60.389 50.000 0.00 0.00 0.00 4.20
2173 2247 0.800683 ACACACACACACACGTCGAG 60.801 55.000 0.00 0.00 0.00 4.04
2174 2248 0.800683 CACACACACACACGTCGAGT 60.801 55.000 0.00 0.00 0.00 4.18
2175 2249 0.108992 ACACACACACACGTCGAGTT 60.109 50.000 0.00 0.00 0.00 3.01
2176 2250 0.570734 CACACACACACGTCGAGTTC 59.429 55.000 0.00 0.00 0.00 3.01
2177 2251 0.526954 ACACACACACGTCGAGTTCC 60.527 55.000 0.00 0.00 0.00 3.62
2178 2252 1.066918 ACACACACGTCGAGTTCCC 59.933 57.895 0.00 0.00 0.00 3.97
2179 2253 2.014554 CACACACGTCGAGTTCCCG 61.015 63.158 0.00 0.00 0.00 5.14
2180 2254 2.333938 CACACGTCGAGTTCCCGT 59.666 61.111 0.00 0.00 34.71 5.28
2182 2256 2.333938 CACGTCGAGTTCCCGTGT 59.666 61.111 15.08 0.00 45.00 4.49
2183 2257 1.728426 CACGTCGAGTTCCCGTGTC 60.728 63.158 15.08 0.00 45.00 3.67
2184 2258 2.188829 ACGTCGAGTTCCCGTGTCA 61.189 57.895 0.00 0.00 32.86 3.58
2185 2259 1.008194 CGTCGAGTTCCCGTGTCAA 60.008 57.895 0.00 0.00 0.00 3.18
2186 2260 0.388134 CGTCGAGTTCCCGTGTCAAT 60.388 55.000 0.00 0.00 0.00 2.57
2187 2261 1.347320 GTCGAGTTCCCGTGTCAATC 58.653 55.000 0.00 0.00 0.00 2.67
2188 2262 1.067776 GTCGAGTTCCCGTGTCAATCT 60.068 52.381 0.00 0.00 0.00 2.40
2189 2263 1.616865 TCGAGTTCCCGTGTCAATCTT 59.383 47.619 0.00 0.00 0.00 2.40
2190 2264 1.726791 CGAGTTCCCGTGTCAATCTTG 59.273 52.381 0.00 0.00 0.00 3.02
2191 2265 2.076863 GAGTTCCCGTGTCAATCTTGG 58.923 52.381 0.00 0.00 0.00 3.61
2192 2266 0.521735 GTTCCCGTGTCAATCTTGGC 59.478 55.000 0.00 0.00 0.00 4.52
2193 2267 0.400213 TTCCCGTGTCAATCTTGGCT 59.600 50.000 0.00 0.00 33.01 4.75
2194 2268 0.036388 TCCCGTGTCAATCTTGGCTC 60.036 55.000 0.00 0.00 33.01 4.70
2195 2269 1.026718 CCCGTGTCAATCTTGGCTCC 61.027 60.000 0.00 0.00 33.01 4.70
2196 2270 1.026718 CCGTGTCAATCTTGGCTCCC 61.027 60.000 0.00 0.00 33.01 4.30
2197 2271 0.036010 CGTGTCAATCTTGGCTCCCT 60.036 55.000 0.00 0.00 33.01 4.20
2198 2272 1.743996 GTGTCAATCTTGGCTCCCTC 58.256 55.000 0.00 0.00 33.01 4.30
2199 2273 0.620556 TGTCAATCTTGGCTCCCTCC 59.379 55.000 0.00 0.00 33.01 4.30
2200 2274 0.106967 GTCAATCTTGGCTCCCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
2201 2275 1.153086 CAATCTTGGCTCCCTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
2202 2276 1.616628 AATCTTGGCTCCCTCCCGT 60.617 57.895 0.00 0.00 0.00 5.28
2203 2277 1.915078 AATCTTGGCTCCCTCCCGTG 61.915 60.000 0.00 0.00 0.00 4.94
2204 2278 2.822643 ATCTTGGCTCCCTCCCGTGA 62.823 60.000 0.00 0.00 0.00 4.35
2205 2279 2.285368 TTGGCTCCCTCCCGTGAT 60.285 61.111 0.00 0.00 0.00 3.06
2206 2280 2.599645 CTTGGCTCCCTCCCGTGATG 62.600 65.000 0.00 0.00 0.00 3.07
2207 2281 3.866582 GGCTCCCTCCCGTGATGG 61.867 72.222 0.00 0.00 37.55 3.51
2208 2282 2.764128 GCTCCCTCCCGTGATGGA 60.764 66.667 0.00 0.00 42.00 3.41
2213 2287 2.989639 CTCCCGTGATGGAGCCAA 59.010 61.111 0.00 0.00 45.13 4.52
2214 2288 1.299648 CTCCCGTGATGGAGCCAAA 59.700 57.895 0.00 0.00 45.13 3.28
2215 2289 1.002624 TCCCGTGATGGAGCCAAAC 60.003 57.895 0.00 0.00 42.00 2.93
2216 2290 1.303236 CCCGTGATGGAGCCAAACA 60.303 57.895 0.00 0.00 42.00 2.83
2217 2291 1.308069 CCCGTGATGGAGCCAAACAG 61.308 60.000 0.00 0.00 42.00 3.16
2218 2292 1.503542 CGTGATGGAGCCAAACAGC 59.496 57.895 0.00 0.00 0.00 4.40
2219 2293 1.503542 GTGATGGAGCCAAACAGCG 59.496 57.895 0.00 0.00 38.01 5.18
2220 2294 0.955428 GTGATGGAGCCAAACAGCGA 60.955 55.000 0.00 0.00 38.01 4.93
2221 2295 0.955428 TGATGGAGCCAAACAGCGAC 60.955 55.000 0.00 0.00 38.01 5.19
2222 2296 1.970917 GATGGAGCCAAACAGCGACG 61.971 60.000 0.00 0.00 38.01 5.12
2223 2297 4.090057 GGAGCCAAACAGCGACGC 62.090 66.667 13.03 13.03 38.01 5.19
2224 2298 3.044305 GAGCCAAACAGCGACGCT 61.044 61.111 18.46 18.46 40.77 5.07
2233 2307 4.767841 AGCGACGCTGCTGTCTCG 62.768 66.667 23.84 10.67 45.28 4.04
2235 2309 3.168604 CGACGCTGCTGTCTCGTG 61.169 66.667 17.66 4.04 36.50 4.35
2236 2310 2.049985 GACGCTGCTGTCTCGTGT 60.050 61.111 14.37 0.00 36.50 4.49
2237 2311 2.049985 ACGCTGCTGTCTCGTGTC 60.050 61.111 0.00 0.00 34.92 3.67
2238 2312 3.168604 CGCTGCTGTCTCGTGTCG 61.169 66.667 0.00 0.00 0.00 4.35
2239 2313 2.807045 GCTGCTGTCTCGTGTCGG 60.807 66.667 0.00 0.00 0.00 4.79
2240 2314 2.126307 CTGCTGTCTCGTGTCGGG 60.126 66.667 0.00 0.00 0.00 5.14
2241 2315 4.357947 TGCTGTCTCGTGTCGGGC 62.358 66.667 0.00 0.00 0.00 6.13
2243 2317 4.778415 CTGTCTCGTGTCGGGCGG 62.778 72.222 0.00 0.00 0.00 6.13
2249 2323 4.807039 CGTGTCGGGCGGGGTTAG 62.807 72.222 0.00 0.00 0.00 2.34
2252 2326 4.832608 GTCGGGCGGGGTTAGCTG 62.833 72.222 0.00 0.00 34.52 4.24
2255 2329 4.796495 GGGCGGGGTTAGCTGGTG 62.796 72.222 0.00 0.00 34.52 4.17
2256 2330 4.796495 GGCGGGGTTAGCTGGTGG 62.796 72.222 0.00 0.00 34.52 4.61
2257 2331 3.712907 GCGGGGTTAGCTGGTGGA 61.713 66.667 0.00 0.00 0.00 4.02
2258 2332 2.584608 CGGGGTTAGCTGGTGGAG 59.415 66.667 0.00 0.00 0.00 3.86
2266 2340 2.954611 GCTGGTGGAGCGTTTTCC 59.045 61.111 0.00 0.00 38.15 3.13
2267 2341 2.626780 GCTGGTGGAGCGTTTTCCC 61.627 63.158 1.23 0.00 38.15 3.97
2268 2342 2.281208 TGGTGGAGCGTTTTCCCG 60.281 61.111 1.23 0.00 36.35 5.14
2308 2382 2.580815 TCAGCATGAGGCACCGAG 59.419 61.111 0.00 0.00 42.56 4.63
2309 2383 3.670637 TCAGCATGAGGCACCGAGC 62.671 63.158 0.00 0.00 42.56 5.03
2321 2395 4.803426 CCGAGCCGAGTGCAGGTC 62.803 72.222 0.00 0.00 44.83 3.85
2322 2396 3.753434 CGAGCCGAGTGCAGGTCT 61.753 66.667 0.00 0.00 44.83 3.85
2323 2397 2.125753 GAGCCGAGTGCAGGTCTG 60.126 66.667 0.00 0.00 44.83 3.51
2324 2398 2.601666 AGCCGAGTGCAGGTCTGA 60.602 61.111 1.65 0.00 44.83 3.27
2325 2399 2.433318 GCCGAGTGCAGGTCTGAC 60.433 66.667 0.00 0.00 40.77 3.51
2326 2400 2.262915 CCGAGTGCAGGTCTGACC 59.737 66.667 19.20 19.20 38.99 4.02
2336 2410 1.214062 GGTCTGACCTCTGTGCTCG 59.786 63.158 19.53 0.00 34.73 5.03
2337 2411 1.214062 GTCTGACCTCTGTGCTCGG 59.786 63.158 0.00 0.00 0.00 4.63
2338 2412 1.228583 TCTGACCTCTGTGCTCGGT 60.229 57.895 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.210331 GCATAGTTTGGGATCCAGACATT 58.790 43.478 15.23 0.00 40.54 2.71
38 39 2.092429 GTGGCATAGTTTGGGATCCAGA 60.092 50.000 15.23 0.00 33.81 3.86
115 116 5.240713 CAACTATTGGAAGCAGGATCAAC 57.759 43.478 0.00 0.00 0.00 3.18
180 181 3.771479 AGGGGATTGAAAGAATCCTTTGC 59.229 43.478 12.13 0.00 44.35 3.68
266 269 2.874701 CTCCATTGAATAGGCTGAACGG 59.125 50.000 0.00 0.00 0.00 4.44
269 272 3.523157 TCCACTCCATTGAATAGGCTGAA 59.477 43.478 0.00 0.00 0.00 3.02
281 284 1.149101 ACTGGTGGTTCCACTCCATT 58.851 50.000 19.42 4.18 41.93 3.16
359 362 7.419172 GGACAGGCTAACTTCCATATCTTACTT 60.419 40.741 0.00 0.00 0.00 2.24
438 442 6.128336 CGTATGTCTATTAGCTAGCGTTACCT 60.128 42.308 9.55 0.00 0.00 3.08
442 446 5.936686 TCGTATGTCTATTAGCTAGCGTT 57.063 39.130 9.55 0.48 0.00 4.84
511 516 2.609459 CACACCGGAAGAGCATATGTTC 59.391 50.000 9.46 11.32 0.00 3.18
532 537 2.904434 TCCAGACCTCCTTCACTTTACC 59.096 50.000 0.00 0.00 0.00 2.85
539 544 1.073923 GCCTTTTCCAGACCTCCTTCA 59.926 52.381 0.00 0.00 0.00 3.02
540 545 1.352687 AGCCTTTTCCAGACCTCCTTC 59.647 52.381 0.00 0.00 0.00 3.46
553 558 1.009997 TCATCCATCCCCAGCCTTTT 58.990 50.000 0.00 0.00 0.00 2.27
573 581 6.064846 ACCTCGCAAGCTTTATCAATAATG 57.935 37.500 0.00 0.00 37.18 1.90
613 621 5.038651 AGTAGTAGGTACTCTAGCACTGG 57.961 47.826 0.00 0.00 37.41 4.00
642 651 7.352079 ACCCAATATTCACAAATCTTGATCC 57.648 36.000 0.00 0.00 33.16 3.36
691 700 7.445121 CACCATAGGTATCATGTTGACATAGT 58.555 38.462 0.00 0.00 32.11 2.12
696 705 4.102524 TCCCACCATAGGTATCATGTTGAC 59.897 45.833 0.00 0.00 32.11 3.18
705 714 2.704065 CCGTCTTTCCCACCATAGGTAT 59.296 50.000 0.00 0.00 32.11 2.73
753 766 4.240096 CCATTGAAACCTGAGTTGCATTC 58.760 43.478 0.00 0.00 41.36 2.67
766 779 3.766051 AGAGCAAGAATCCCCATTGAAAC 59.234 43.478 0.00 0.00 0.00 2.78
817 830 3.008594 TCCTTTTTCATAGACGCCTTGGA 59.991 43.478 0.00 0.00 0.00 3.53
894 907 1.067212 CCCCTAAGAAGGTCGTGATCG 59.933 57.143 0.00 0.00 41.89 3.69
950 963 4.228210 TCTCATTCCCTCCAGCAATAAACT 59.772 41.667 0.00 0.00 0.00 2.66
1100 1115 1.991121 CTGCCCTCCAACATGCATAT 58.009 50.000 0.00 0.00 32.53 1.78
1188 1203 4.095036 GCTTCCCTATTACAGTGCTCAAAC 59.905 45.833 0.00 0.00 0.00 2.93
1266 1282 8.866970 TTTTATTTAAAGGTTCCTCGTACCAT 57.133 30.769 0.00 0.00 38.16 3.55
1288 1304 7.081349 TCGTTTGCGAAGATCATTACAATTTT 58.919 30.769 0.00 0.00 44.92 1.82
1604 1675 2.122783 TTGGTTGTACCTGGCTATGC 57.877 50.000 0.00 0.00 39.58 3.14
1608 1679 2.555227 CCTTCATTGGTTGTACCTGGCT 60.555 50.000 0.00 0.00 39.58 4.75
1649 1720 1.835494 ACCGAGTCTCGATTTCCAGA 58.165 50.000 23.74 0.00 43.74 3.86
1758 1830 2.027745 ACTGGATGCGATGAAGACTGTT 60.028 45.455 0.00 0.00 0.00 3.16
1807 1879 0.392863 TCATGACGGCTGTGATTGGG 60.393 55.000 0.80 0.00 0.00 4.12
1847 1919 6.139679 TGTCTAAATCAAGATTCCCAAGGT 57.860 37.500 0.00 0.00 0.00 3.50
1914 1986 1.939934 CAGTCAACACGGCTTCAGAAA 59.060 47.619 0.00 0.00 0.00 2.52
1931 2004 1.005347 GCGCGCGTTTATGTTATCAGT 60.005 47.619 32.35 0.00 0.00 3.41
1952 2025 2.347731 AGATCGGAAAGGCTTCGTTTC 58.652 47.619 0.00 3.48 37.47 2.78
1955 2028 3.604875 TTTAGATCGGAAAGGCTTCGT 57.395 42.857 0.00 0.00 31.77 3.85
1974 2047 1.270839 CCGATTGTCGCCCCTGATATT 60.271 52.381 0.00 0.00 38.82 1.28
1990 2064 3.067106 CAGTGACAAACTAACTGCCGAT 58.933 45.455 0.00 0.00 36.83 4.18
1994 2068 4.376413 CGATCACAGTGACAAACTAACTGC 60.376 45.833 5.05 0.00 44.14 4.40
1995 2069 4.150627 CCGATCACAGTGACAAACTAACTG 59.849 45.833 5.05 0.67 45.46 3.16
1996 2070 4.307432 CCGATCACAGTGACAAACTAACT 58.693 43.478 5.05 0.00 36.83 2.24
1997 2071 3.432252 CCCGATCACAGTGACAAACTAAC 59.568 47.826 5.05 0.00 36.83 2.34
1998 2072 3.556213 CCCCGATCACAGTGACAAACTAA 60.556 47.826 5.05 0.00 36.83 2.24
1999 2073 2.028476 CCCCGATCACAGTGACAAACTA 60.028 50.000 5.05 0.00 36.83 2.24
2000 2074 1.270839 CCCCGATCACAGTGACAAACT 60.271 52.381 5.05 0.00 40.93 2.66
2001 2075 1.156736 CCCCGATCACAGTGACAAAC 58.843 55.000 5.05 0.00 0.00 2.93
2002 2076 1.001974 CTCCCCGATCACAGTGACAAA 59.998 52.381 5.05 0.00 0.00 2.83
2003 2077 0.608130 CTCCCCGATCACAGTGACAA 59.392 55.000 5.05 0.00 0.00 3.18
2004 2078 0.541998 ACTCCCCGATCACAGTGACA 60.542 55.000 5.05 0.00 0.00 3.58
2005 2079 0.608640 AACTCCCCGATCACAGTGAC 59.391 55.000 5.05 0.00 0.00 3.67
2006 2080 2.225382 TAACTCCCCGATCACAGTGA 57.775 50.000 5.50 5.50 0.00 3.41
2007 2081 3.133003 AGAATAACTCCCCGATCACAGTG 59.867 47.826 0.00 0.00 0.00 3.66
2008 2082 3.375699 AGAATAACTCCCCGATCACAGT 58.624 45.455 0.00 0.00 0.00 3.55
2009 2083 5.290386 GTTAGAATAACTCCCCGATCACAG 58.710 45.833 0.00 0.00 0.00 3.66
2010 2084 4.100498 GGTTAGAATAACTCCCCGATCACA 59.900 45.833 0.00 0.00 0.00 3.58
2011 2085 4.100498 TGGTTAGAATAACTCCCCGATCAC 59.900 45.833 0.00 0.00 0.00 3.06
2012 2086 4.291792 TGGTTAGAATAACTCCCCGATCA 58.708 43.478 0.00 0.00 0.00 2.92
2013 2087 4.950205 TGGTTAGAATAACTCCCCGATC 57.050 45.455 0.18 0.00 0.00 3.69
2014 2088 5.045432 TGTTTGGTTAGAATAACTCCCCGAT 60.045 40.000 0.18 0.00 0.00 4.18
2015 2089 4.286549 TGTTTGGTTAGAATAACTCCCCGA 59.713 41.667 0.18 0.00 0.00 5.14
2016 2090 4.581868 TGTTTGGTTAGAATAACTCCCCG 58.418 43.478 0.18 0.00 0.00 5.73
2017 2091 5.417894 CCTTGTTTGGTTAGAATAACTCCCC 59.582 44.000 0.18 0.00 0.00 4.81
2018 2092 5.105877 GCCTTGTTTGGTTAGAATAACTCCC 60.106 44.000 0.18 0.00 0.00 4.30
2019 2093 5.105877 GGCCTTGTTTGGTTAGAATAACTCC 60.106 44.000 0.00 0.00 0.00 3.85
2020 2094 5.710567 AGGCCTTGTTTGGTTAGAATAACTC 59.289 40.000 0.00 0.00 0.00 3.01
2021 2095 5.641155 AGGCCTTGTTTGGTTAGAATAACT 58.359 37.500 0.00 0.00 0.00 2.24
2022 2096 5.475564 TGAGGCCTTGTTTGGTTAGAATAAC 59.524 40.000 6.77 0.00 0.00 1.89
2023 2097 5.636123 TGAGGCCTTGTTTGGTTAGAATAA 58.364 37.500 6.77 0.00 0.00 1.40
2024 2098 5.249780 TGAGGCCTTGTTTGGTTAGAATA 57.750 39.130 6.77 0.00 0.00 1.75
2025 2099 4.112634 TGAGGCCTTGTTTGGTTAGAAT 57.887 40.909 6.77 0.00 0.00 2.40
2026 2100 3.586470 TGAGGCCTTGTTTGGTTAGAA 57.414 42.857 6.77 0.00 0.00 2.10
2027 2101 3.486383 CTTGAGGCCTTGTTTGGTTAGA 58.514 45.455 6.77 0.00 0.00 2.10
2028 2102 2.558359 CCTTGAGGCCTTGTTTGGTTAG 59.442 50.000 6.77 0.00 0.00 2.34
2029 2103 2.175931 TCCTTGAGGCCTTGTTTGGTTA 59.824 45.455 6.77 0.00 34.44 2.85
2030 2104 1.063266 TCCTTGAGGCCTTGTTTGGTT 60.063 47.619 6.77 0.00 34.44 3.67
2031 2105 0.555769 TCCTTGAGGCCTTGTTTGGT 59.444 50.000 6.77 0.00 34.44 3.67
2032 2106 0.961753 GTCCTTGAGGCCTTGTTTGG 59.038 55.000 6.77 5.78 34.44 3.28
2033 2107 0.593128 CGTCCTTGAGGCCTTGTTTG 59.407 55.000 6.77 0.00 34.44 2.93
2034 2108 0.472471 TCGTCCTTGAGGCCTTGTTT 59.528 50.000 6.77 0.00 34.44 2.83
2035 2109 0.250338 GTCGTCCTTGAGGCCTTGTT 60.250 55.000 6.77 0.00 34.44 2.83
2036 2110 1.371558 GTCGTCCTTGAGGCCTTGT 59.628 57.895 6.77 0.00 34.44 3.16
2037 2111 1.376037 GGTCGTCCTTGAGGCCTTG 60.376 63.158 6.77 0.00 34.44 3.61
2038 2112 2.593956 GGGTCGTCCTTGAGGCCTT 61.594 63.158 6.77 0.00 34.44 4.35
2039 2113 3.003763 GGGTCGTCCTTGAGGCCT 61.004 66.667 3.86 3.86 34.44 5.19
2040 2114 4.452733 CGGGTCGTCCTTGAGGCC 62.453 72.222 0.00 0.00 34.44 5.19
2041 2115 3.379445 TCGGGTCGTCCTTGAGGC 61.379 66.667 0.00 0.00 34.44 4.70
2042 2116 2.572284 GTCGGGTCGTCCTTGAGG 59.428 66.667 0.00 0.00 0.00 3.86
2043 2117 2.178521 CGTCGGGTCGTCCTTGAG 59.821 66.667 0.00 0.00 0.00 3.02
2044 2118 2.595463 ACGTCGGGTCGTCCTTGA 60.595 61.111 0.00 0.00 40.04 3.02
2045 2119 2.430244 CACGTCGGGTCGTCCTTG 60.430 66.667 0.00 0.00 42.27 3.61
2046 2120 3.677648 CCACGTCGGGTCGTCCTT 61.678 66.667 0.00 0.00 42.27 3.36
2047 2121 3.933048 ATCCACGTCGGGTCGTCCT 62.933 63.158 0.00 0.00 42.27 3.85
2048 2122 1.656818 TAATCCACGTCGGGTCGTCC 61.657 60.000 0.00 0.00 42.27 4.79
2049 2123 0.248377 CTAATCCACGTCGGGTCGTC 60.248 60.000 0.00 0.00 42.27 4.20
2050 2124 1.805254 CTAATCCACGTCGGGTCGT 59.195 57.895 0.00 0.00 45.10 4.34
2051 2125 1.588139 GCTAATCCACGTCGGGTCG 60.588 63.158 0.00 0.00 34.36 4.79
2052 2126 0.527817 CAGCTAATCCACGTCGGGTC 60.528 60.000 0.00 0.00 34.36 4.46
2053 2127 1.515954 CAGCTAATCCACGTCGGGT 59.484 57.895 0.00 0.00 34.36 5.28
2054 2128 1.227263 CCAGCTAATCCACGTCGGG 60.227 63.158 0.00 0.00 34.36 5.14
2055 2129 0.249073 CTCCAGCTAATCCACGTCGG 60.249 60.000 0.00 0.00 0.00 4.79
2056 2130 0.249073 CCTCCAGCTAATCCACGTCG 60.249 60.000 0.00 0.00 0.00 5.12
2057 2131 1.112113 TCCTCCAGCTAATCCACGTC 58.888 55.000 0.00 0.00 0.00 4.34
2058 2132 1.207329 GTTCCTCCAGCTAATCCACGT 59.793 52.381 0.00 0.00 0.00 4.49
2059 2133 1.802880 CGTTCCTCCAGCTAATCCACG 60.803 57.143 0.00 0.00 0.00 4.94
2060 2134 1.207329 ACGTTCCTCCAGCTAATCCAC 59.793 52.381 0.00 0.00 0.00 4.02
2061 2135 1.207089 CACGTTCCTCCAGCTAATCCA 59.793 52.381 0.00 0.00 0.00 3.41
2062 2136 1.941325 CACGTTCCTCCAGCTAATCC 58.059 55.000 0.00 0.00 0.00 3.01
2063 2137 1.291132 GCACGTTCCTCCAGCTAATC 58.709 55.000 0.00 0.00 0.00 1.75
2064 2138 0.460284 CGCACGTTCCTCCAGCTAAT 60.460 55.000 0.00 0.00 0.00 1.73
2065 2139 1.080093 CGCACGTTCCTCCAGCTAA 60.080 57.895 0.00 0.00 0.00 3.09
2066 2140 0.961857 TACGCACGTTCCTCCAGCTA 60.962 55.000 0.00 0.00 0.00 3.32
2067 2141 2.273179 TACGCACGTTCCTCCAGCT 61.273 57.895 0.00 0.00 0.00 4.24
2068 2142 2.092882 GTACGCACGTTCCTCCAGC 61.093 63.158 0.00 0.00 0.00 4.85
2069 2143 1.800315 CGTACGCACGTTCCTCCAG 60.800 63.158 0.52 0.00 43.31 3.86
2070 2144 2.256158 CGTACGCACGTTCCTCCA 59.744 61.111 0.52 0.00 43.31 3.86
2079 2153 1.881252 CACCATAGGGCGTACGCAC 60.881 63.158 37.99 36.35 46.56 5.34
2080 2154 2.497293 CACCATAGGGCGTACGCA 59.503 61.111 37.99 21.18 44.11 5.24
2081 2155 2.918230 AAGCACCATAGGGCGTACGC 62.918 60.000 31.54 31.54 37.90 4.42
2082 2156 0.386476 TAAGCACCATAGGGCGTACG 59.614 55.000 11.84 11.84 37.90 3.67
2083 2157 2.612221 GGATAAGCACCATAGGGCGTAC 60.612 54.545 0.00 0.00 37.90 3.67
2084 2158 1.621814 GGATAAGCACCATAGGGCGTA 59.378 52.381 0.00 0.00 37.90 4.42
2085 2159 0.396811 GGATAAGCACCATAGGGCGT 59.603 55.000 0.00 0.00 37.90 5.68
2086 2160 0.670546 CGGATAAGCACCATAGGGCG 60.671 60.000 0.00 0.00 37.90 6.13
2087 2161 0.685097 TCGGATAAGCACCATAGGGC 59.315 55.000 0.00 0.00 37.90 5.19
2088 2162 3.007940 TGAATCGGATAAGCACCATAGGG 59.992 47.826 0.00 0.00 41.29 3.53
2089 2163 4.248859 CTGAATCGGATAAGCACCATAGG 58.751 47.826 0.00 0.00 0.00 2.57
2090 2164 4.887748 ACTGAATCGGATAAGCACCATAG 58.112 43.478 0.00 0.00 0.00 2.23
2091 2165 4.955811 ACTGAATCGGATAAGCACCATA 57.044 40.909 0.00 0.00 0.00 2.74
2092 2166 3.845781 ACTGAATCGGATAAGCACCAT 57.154 42.857 0.00 0.00 0.00 3.55
2093 2167 3.270027 CAACTGAATCGGATAAGCACCA 58.730 45.455 0.00 0.00 0.00 4.17
2094 2168 3.063997 CACAACTGAATCGGATAAGCACC 59.936 47.826 0.00 0.00 0.00 5.01
2095 2169 3.932710 TCACAACTGAATCGGATAAGCAC 59.067 43.478 0.00 0.00 0.00 4.40
2096 2170 4.183865 CTCACAACTGAATCGGATAAGCA 58.816 43.478 0.00 0.00 0.00 3.91
2097 2171 4.033358 CACTCACAACTGAATCGGATAAGC 59.967 45.833 0.00 0.00 0.00 3.09
2098 2172 4.033358 GCACTCACAACTGAATCGGATAAG 59.967 45.833 0.00 0.00 0.00 1.73
2099 2173 3.932710 GCACTCACAACTGAATCGGATAA 59.067 43.478 0.00 0.00 0.00 1.75
2100 2174 3.056179 TGCACTCACAACTGAATCGGATA 60.056 43.478 0.00 0.00 0.00 2.59
2101 2175 2.289631 TGCACTCACAACTGAATCGGAT 60.290 45.455 0.00 0.00 0.00 4.18
2102 2176 1.069978 TGCACTCACAACTGAATCGGA 59.930 47.619 0.00 0.00 0.00 4.55
2103 2177 1.462283 CTGCACTCACAACTGAATCGG 59.538 52.381 0.00 0.00 0.00 4.18
2104 2178 2.407090 TCTGCACTCACAACTGAATCG 58.593 47.619 0.00 0.00 0.00 3.34
2105 2179 3.186001 CACTCTGCACTCACAACTGAATC 59.814 47.826 0.00 0.00 0.00 2.52
2106 2180 3.136763 CACTCTGCACTCACAACTGAAT 58.863 45.455 0.00 0.00 0.00 2.57
2107 2181 2.554142 CACTCTGCACTCACAACTGAA 58.446 47.619 0.00 0.00 0.00 3.02
2108 2182 1.807755 GCACTCTGCACTCACAACTGA 60.808 52.381 0.00 0.00 44.26 3.41
2109 2183 0.585357 GCACTCTGCACTCACAACTG 59.415 55.000 0.00 0.00 44.26 3.16
2110 2184 2.997899 GCACTCTGCACTCACAACT 58.002 52.632 0.00 0.00 44.26 3.16
2121 2195 2.664851 TTTCGGCGGTGCACTCTG 60.665 61.111 17.98 13.71 0.00 3.35
2122 2196 2.665185 GTTTCGGCGGTGCACTCT 60.665 61.111 17.98 0.00 0.00 3.24
2123 2197 4.072088 CGTTTCGGCGGTGCACTC 62.072 66.667 17.98 8.90 0.00 3.51
2134 2208 2.093983 CTTTCGCGCTCCGTTTCG 59.906 61.111 5.56 0.00 38.35 3.46
2135 2209 1.562575 TTCCTTTCGCGCTCCGTTTC 61.563 55.000 5.56 0.00 38.35 2.78
2136 2210 1.595929 TTCCTTTCGCGCTCCGTTT 60.596 52.632 5.56 0.00 38.35 3.60
2137 2211 2.029964 TTCCTTTCGCGCTCCGTT 59.970 55.556 5.56 0.00 38.35 4.44
2138 2212 2.737376 GTTCCTTTCGCGCTCCGT 60.737 61.111 5.56 0.00 38.35 4.69
2139 2213 2.736995 TGTTCCTTTCGCGCTCCG 60.737 61.111 5.56 0.00 38.61 4.63
2140 2214 1.959226 TGTGTTCCTTTCGCGCTCC 60.959 57.895 5.56 0.00 0.00 4.70
2141 2215 1.204312 GTGTGTTCCTTTCGCGCTC 59.796 57.895 5.56 0.00 0.00 5.03
2142 2216 1.522806 TGTGTGTTCCTTTCGCGCT 60.523 52.632 5.56 0.00 0.00 5.92
2143 2217 1.368850 GTGTGTGTTCCTTTCGCGC 60.369 57.895 0.00 0.00 0.00 6.86
2144 2218 0.315869 GTGTGTGTGTTCCTTTCGCG 60.316 55.000 0.00 0.00 0.00 5.87
2145 2219 0.730265 TGTGTGTGTGTTCCTTTCGC 59.270 50.000 0.00 0.00 0.00 4.70
2146 2220 1.735018 TGTGTGTGTGTGTTCCTTTCG 59.265 47.619 0.00 0.00 0.00 3.46
2147 2221 2.475519 CGTGTGTGTGTGTGTTCCTTTC 60.476 50.000 0.00 0.00 0.00 2.62
2148 2222 1.466950 CGTGTGTGTGTGTGTTCCTTT 59.533 47.619 0.00 0.00 0.00 3.11
2149 2223 1.083489 CGTGTGTGTGTGTGTTCCTT 58.917 50.000 0.00 0.00 0.00 3.36
2150 2224 0.036765 ACGTGTGTGTGTGTGTTCCT 60.037 50.000 0.00 0.00 0.00 3.36
2151 2225 0.372334 GACGTGTGTGTGTGTGTTCC 59.628 55.000 0.00 0.00 0.00 3.62
2152 2226 0.024491 CGACGTGTGTGTGTGTGTTC 59.976 55.000 0.00 0.00 0.00 3.18
2153 2227 0.388778 TCGACGTGTGTGTGTGTGTT 60.389 50.000 0.00 0.00 0.00 3.32
2154 2228 0.800683 CTCGACGTGTGTGTGTGTGT 60.801 55.000 0.00 0.00 0.00 3.72
2155 2229 0.800683 ACTCGACGTGTGTGTGTGTG 60.801 55.000 1.08 0.00 0.00 3.82
2156 2230 0.108992 AACTCGACGTGTGTGTGTGT 60.109 50.000 2.94 0.00 0.00 3.72
2157 2231 0.570734 GAACTCGACGTGTGTGTGTG 59.429 55.000 2.94 0.00 0.00 3.82
2158 2232 0.526954 GGAACTCGACGTGTGTGTGT 60.527 55.000 2.94 0.00 0.00 3.72
2159 2233 1.213094 GGGAACTCGACGTGTGTGTG 61.213 60.000 2.94 0.00 0.00 3.82
2160 2234 1.066918 GGGAACTCGACGTGTGTGT 59.933 57.895 2.94 0.00 0.00 3.72
2161 2235 2.014554 CGGGAACTCGACGTGTGTG 61.015 63.158 2.94 0.00 0.00 3.82
2162 2236 2.333938 CGGGAACTCGACGTGTGT 59.666 61.111 2.94 0.00 0.00 3.72
2163 2237 2.333938 ACGGGAACTCGACGTGTG 59.666 61.111 2.94 0.00 39.64 3.82
2166 2240 1.727511 TTGACACGGGAACTCGACGT 61.728 55.000 0.00 0.00 42.17 4.34
2167 2241 0.388134 ATTGACACGGGAACTCGACG 60.388 55.000 0.00 0.00 0.00 5.12
2168 2242 1.067776 AGATTGACACGGGAACTCGAC 60.068 52.381 0.00 0.00 0.00 4.20
2169 2243 1.254026 AGATTGACACGGGAACTCGA 58.746 50.000 0.00 0.00 0.00 4.04
2170 2244 1.726791 CAAGATTGACACGGGAACTCG 59.273 52.381 0.00 0.00 0.00 4.18
2171 2245 2.076863 CCAAGATTGACACGGGAACTC 58.923 52.381 0.00 0.00 0.00 3.01
2172 2246 1.882352 GCCAAGATTGACACGGGAACT 60.882 52.381 0.00 0.00 0.00 3.01
2173 2247 0.521735 GCCAAGATTGACACGGGAAC 59.478 55.000 0.00 0.00 0.00 3.62
2174 2248 0.400213 AGCCAAGATTGACACGGGAA 59.600 50.000 0.00 0.00 0.00 3.97
2175 2249 0.036388 GAGCCAAGATTGACACGGGA 60.036 55.000 0.00 0.00 0.00 5.14
2176 2250 1.026718 GGAGCCAAGATTGACACGGG 61.027 60.000 0.00 0.00 0.00 5.28
2177 2251 1.026718 GGGAGCCAAGATTGACACGG 61.027 60.000 0.00 0.00 0.00 4.94
2178 2252 0.036010 AGGGAGCCAAGATTGACACG 60.036 55.000 0.00 0.00 0.00 4.49
2179 2253 1.680249 GGAGGGAGCCAAGATTGACAC 60.680 57.143 0.00 0.00 0.00 3.67
2180 2254 0.620556 GGAGGGAGCCAAGATTGACA 59.379 55.000 0.00 0.00 0.00 3.58
2181 2255 0.106967 GGGAGGGAGCCAAGATTGAC 60.107 60.000 0.00 0.00 0.00 3.18
2182 2256 1.626356 CGGGAGGGAGCCAAGATTGA 61.626 60.000 0.00 0.00 0.00 2.57
2183 2257 1.153086 CGGGAGGGAGCCAAGATTG 60.153 63.158 0.00 0.00 0.00 2.67
2184 2258 1.616628 ACGGGAGGGAGCCAAGATT 60.617 57.895 0.00 0.00 0.00 2.40
2185 2259 2.041265 ACGGGAGGGAGCCAAGAT 59.959 61.111 0.00 0.00 0.00 2.40
2186 2260 3.003173 CACGGGAGGGAGCCAAGA 61.003 66.667 0.00 0.00 32.31 3.02
2187 2261 3.003173 TCACGGGAGGGAGCCAAG 61.003 66.667 0.00 0.00 37.36 3.61
2197 2271 1.002624 GTTTGGCTCCATCACGGGA 60.003 57.895 0.00 0.00 34.36 5.14
2198 2272 1.303236 TGTTTGGCTCCATCACGGG 60.303 57.895 0.00 0.00 34.36 5.28
2199 2273 1.926511 GCTGTTTGGCTCCATCACGG 61.927 60.000 0.00 0.00 0.00 4.94
2200 2274 1.503542 GCTGTTTGGCTCCATCACG 59.496 57.895 0.00 0.00 0.00 4.35
2201 2275 0.955428 TCGCTGTTTGGCTCCATCAC 60.955 55.000 0.00 0.00 0.00 3.06
2202 2276 0.955428 GTCGCTGTTTGGCTCCATCA 60.955 55.000 0.00 0.00 0.00 3.07
2203 2277 1.796796 GTCGCTGTTTGGCTCCATC 59.203 57.895 0.00 0.00 0.00 3.51
2204 2278 2.034879 CGTCGCTGTTTGGCTCCAT 61.035 57.895 0.00 0.00 0.00 3.41
2205 2279 2.664851 CGTCGCTGTTTGGCTCCA 60.665 61.111 0.00 0.00 0.00 3.86
2206 2280 4.090057 GCGTCGCTGTTTGGCTCC 62.090 66.667 10.68 0.00 0.00 4.70
2207 2281 3.044305 AGCGTCGCTGTTTGGCTC 61.044 61.111 21.02 0.00 37.57 4.70
2216 2290 4.767841 CGAGACAGCAGCGTCGCT 62.768 66.667 15.47 15.47 45.21 4.93
2218 2292 3.168604 CACGAGACAGCAGCGTCG 61.169 66.667 10.45 9.08 40.98 5.12
2219 2293 2.049985 ACACGAGACAGCAGCGTC 60.050 61.111 8.75 8.75 35.90 5.19
2220 2294 2.049985 GACACGAGACAGCAGCGT 60.050 61.111 0.00 0.00 39.04 5.07
2221 2295 3.168604 CGACACGAGACAGCAGCG 61.169 66.667 0.00 0.00 0.00 5.18
2222 2296 2.807045 CCGACACGAGACAGCAGC 60.807 66.667 0.00 0.00 0.00 5.25
2223 2297 2.126307 CCCGACACGAGACAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
2224 2298 4.357947 GCCCGACACGAGACAGCA 62.358 66.667 0.00 0.00 0.00 4.41
2226 2300 4.778415 CCGCCCGACACGAGACAG 62.778 72.222 0.00 0.00 0.00 3.51
2232 2306 4.807039 CTAACCCCGCCCGACACG 62.807 72.222 0.00 0.00 0.00 4.49
2235 2309 4.832608 CAGCTAACCCCGCCCGAC 62.833 72.222 0.00 0.00 0.00 4.79
2238 2312 4.796495 CACCAGCTAACCCCGCCC 62.796 72.222 0.00 0.00 0.00 6.13
2239 2313 4.796495 CCACCAGCTAACCCCGCC 62.796 72.222 0.00 0.00 0.00 6.13
2240 2314 3.682292 CTCCACCAGCTAACCCCGC 62.682 68.421 0.00 0.00 0.00 6.13
2241 2315 2.584608 CTCCACCAGCTAACCCCG 59.415 66.667 0.00 0.00 0.00 5.73
2242 2316 2.272471 GCTCCACCAGCTAACCCC 59.728 66.667 0.00 0.00 45.83 4.95
2249 2323 2.626780 GGGAAAACGCTCCACCAGC 61.627 63.158 1.67 0.00 45.85 4.85
2250 2324 2.325082 CGGGAAAACGCTCCACCAG 61.325 63.158 1.67 0.00 37.20 4.00
2251 2325 2.281208 CGGGAAAACGCTCCACCA 60.281 61.111 1.67 0.00 37.20 4.17
2287 2361 2.404995 GGTGCCTCATGCTGAGTGC 61.405 63.158 10.86 12.64 42.80 4.40
2288 2362 2.104859 CGGTGCCTCATGCTGAGTG 61.105 63.158 10.86 5.41 42.80 3.51
2289 2363 2.236223 CTCGGTGCCTCATGCTGAGT 62.236 60.000 10.86 0.00 42.80 3.41
2290 2364 1.521010 CTCGGTGCCTCATGCTGAG 60.521 63.158 6.28 6.28 43.91 3.35
2291 2365 2.580815 CTCGGTGCCTCATGCTGA 59.419 61.111 0.00 0.00 42.00 4.26
2292 2366 3.200593 GCTCGGTGCCTCATGCTG 61.201 66.667 0.00 0.00 42.00 4.41
2304 2378 4.803426 GACCTGCACTCGGCTCGG 62.803 72.222 0.00 0.00 45.15 4.63
2305 2379 3.753434 AGACCTGCACTCGGCTCG 61.753 66.667 0.00 0.00 45.15 5.03
2306 2380 2.125753 CAGACCTGCACTCGGCTC 60.126 66.667 0.00 0.00 45.15 4.70
2307 2381 2.601666 TCAGACCTGCACTCGGCT 60.602 61.111 0.00 0.00 45.15 5.52
2308 2382 2.433318 GTCAGACCTGCACTCGGC 60.433 66.667 0.00 0.00 45.13 5.54
2309 2383 2.262915 GGTCAGACCTGCACTCGG 59.737 66.667 12.94 0.00 34.73 4.63
2318 2392 1.214062 CGAGCACAGAGGTCAGACC 59.786 63.158 12.25 12.25 44.97 3.85
2319 2393 1.214062 CCGAGCACAGAGGTCAGAC 59.786 63.158 0.00 0.00 44.97 3.51
2320 2394 1.228583 ACCGAGCACAGAGGTCAGA 60.229 57.895 0.00 0.00 44.97 3.27
2321 2395 3.371021 ACCGAGCACAGAGGTCAG 58.629 61.111 0.00 0.00 44.97 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.