Multiple sequence alignment - TraesCS1D01G151800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G151800 chr1D 100.000 5431 0 0 1 5431 211681344 211686774 0.000000e+00 10030.0
1 TraesCS1D01G151800 chr1B 96.415 1841 57 6 3598 5431 305175601 305173763 0.000000e+00 3025.0
2 TraesCS1D01G151800 chr1B 90.894 1790 78 33 5 1787 305178873 305177162 0.000000e+00 2324.0
3 TraesCS1D01G151800 chr1B 92.346 1594 68 20 1855 3410 305177164 305175587 0.000000e+00 2218.0
4 TraesCS1D01G151800 chr1B 94.118 204 9 2 3386 3587 591353683 591353885 1.900000e-79 307.0
5 TraesCS1D01G151800 chr1B 91.209 91 4 3 1784 1872 491239725 491239637 2.660000e-23 121.0
6 TraesCS1D01G151800 chr1A 95.643 1446 42 7 3799 5241 267144873 267146300 0.000000e+00 2302.0
7 TraesCS1D01G151800 chr1A 95.676 1272 31 12 532 1787 267141790 267143053 0.000000e+00 2023.0
8 TraesCS1D01G151800 chr1A 92.928 806 43 9 1855 2652 267143051 267143850 0.000000e+00 1160.0
9 TraesCS1D01G151800 chr1A 90.840 655 22 6 2587 3226 267143822 267144453 0.000000e+00 843.0
10 TraesCS1D01G151800 chr1A 82.582 488 47 12 5 485 267141229 267141685 3.940000e-106 396.0
11 TraesCS1D01G151800 chr1A 97.030 202 6 0 3598 3799 267144591 267144792 1.870000e-89 340.0
12 TraesCS1D01G151800 chr1A 97.409 193 4 1 5239 5431 267146375 267146566 1.460000e-85 327.0
13 TraesCS1D01G151800 chr1A 96.154 156 4 2 3255 3410 267144452 267144605 2.510000e-63 254.0
14 TraesCS1D01G151800 chr1A 92.500 80 5 1 1785 1863 454330206 454330127 4.450000e-21 113.0
15 TraesCS1D01G151800 chr7B 79.548 841 119 23 2031 2859 467449406 467448607 7.950000e-153 551.0
16 TraesCS1D01G151800 chr7B 96.891 193 5 1 3409 3600 529951843 529951651 6.790000e-84 322.0
17 TraesCS1D01G151800 chr7B 95.361 194 5 2 3409 3601 361204091 361203901 6.830000e-79 305.0
18 TraesCS1D01G151800 chr7B 90.625 224 15 4 3383 3605 56498667 56498449 5.320000e-75 292.0
19 TraesCS1D01G151800 chr7B 77.586 174 23 7 1911 2081 75852453 75852293 2.080000e-14 91.6
20 TraesCS1D01G151800 chr7B 81.416 113 11 4 1986 2096 642755310 642755414 3.490000e-12 84.2
21 TraesCS1D01G151800 chr3B 94.954 218 6 4 3398 3612 368605660 368605445 2.420000e-88 337.0
22 TraesCS1D01G151800 chr3B 78.824 170 25 9 1910 2076 528660766 528660927 2.680000e-18 104.0
23 TraesCS1D01G151800 chr3B 81.295 139 14 7 1914 2049 53593248 53593119 9.620000e-18 102.0
24 TraesCS1D01G151800 chr3B 100.000 28 0 0 1920 1947 414166149 414166176 1.000000e-02 52.8
25 TraesCS1D01G151800 chr7A 98.404 188 2 1 3405 3591 502353689 502353876 4.060000e-86 329.0
26 TraesCS1D01G151800 chr7A 87.336 229 24 4 2621 2849 326032818 326033041 1.940000e-64 257.0
27 TraesCS1D01G151800 chr7A 80.690 145 14 7 1971 2105 85206267 85206127 3.460000e-17 100.0
28 TraesCS1D01G151800 chr7A 76.437 174 24 9 1911 2081 120798497 120798338 1.620000e-10 78.7
29 TraesCS1D01G151800 chr7A 80.000 100 18 2 1914 2012 699419620 699419718 7.550000e-09 73.1
30 TraesCS1D01G151800 chr2A 97.396 192 4 1 3410 3600 28827573 28827382 5.250000e-85 326.0
31 TraesCS1D01G151800 chr2A 89.300 243 22 3 2616 2858 43143038 43142800 8.840000e-78 302.0
32 TraesCS1D01G151800 chr2A 92.453 212 12 4 3393 3603 713155487 713155279 3.180000e-77 300.0
33 TraesCS1D01G151800 chr2A 97.222 72 2 0 1785 1856 754039014 754039085 7.390000e-24 122.0
34 TraesCS1D01G151800 chr6B 93.427 213 10 3 3398 3608 64738868 64739078 4.080000e-81 313.0
35 TraesCS1D01G151800 chr6A 93.396 212 8 6 3396 3605 94207488 94207281 5.280000e-80 309.0
36 TraesCS1D01G151800 chr6A 94.146 205 8 4 3384 3586 563561638 563561436 5.280000e-80 309.0
37 TraesCS1D01G151800 chr2D 93.365 211 11 2 3410 3619 327962405 327962197 5.280000e-80 309.0
38 TraesCS1D01G151800 chr2D 90.948 232 18 3 2629 2859 630083202 630082973 5.280000e-80 309.0
39 TraesCS1D01G151800 chr2D 89.231 195 19 2 2629 2823 629977020 629976828 5.430000e-60 243.0
40 TraesCS1D01G151800 chr2D 89.474 190 19 1 2638 2827 630044750 630044562 7.030000e-59 239.0
41 TraesCS1D01G151800 chr2D 97.260 73 1 1 1786 1858 327614897 327614826 7.390000e-24 122.0
42 TraesCS1D01G151800 chr2D 94.737 76 3 1 1785 1860 8495975 8495901 3.440000e-22 117.0
43 TraesCS1D01G151800 chr4B 94.089 203 9 3 3393 3594 623421012 623420812 6.830000e-79 305.0
44 TraesCS1D01G151800 chr4B 93.750 80 3 2 1786 1863 269174150 269174071 9.560000e-23 119.0
45 TraesCS1D01G151800 chr3A 97.191 178 5 0 3410 3587 30990180 30990003 8.840000e-78 302.0
46 TraesCS1D01G151800 chr3A 84.043 188 20 7 1914 2099 461843853 461843674 7.230000e-39 172.0
47 TraesCS1D01G151800 chr3A 79.851 134 19 3 1917 2049 44357682 44357556 2.080000e-14 91.6
48 TraesCS1D01G151800 chr5B 92.523 214 9 4 3383 3590 558118087 558118299 3.180000e-77 300.0
49 TraesCS1D01G151800 chr5B 90.196 51 5 0 1914 1964 249585813 249585763 3.510000e-07 67.6
50 TraesCS1D01G151800 chr2B 89.000 200 21 1 2629 2828 773006549 773006351 4.200000e-61 246.0
51 TraesCS1D01G151800 chr5D 89.241 158 12 5 2704 2859 307915887 307916041 5.550000e-45 193.0
52 TraesCS1D01G151800 chr3D 84.656 189 16 6 1914 2099 341490799 341490977 5.590000e-40 176.0
53 TraesCS1D01G151800 chr7D 93.590 78 3 2 1782 1857 615904346 615904269 1.240000e-21 115.0
54 TraesCS1D01G151800 chr6D 91.667 84 6 1 1775 1857 469492422 469492339 1.240000e-21 115.0
55 TraesCS1D01G151800 chr6D 91.667 84 6 1 1775 1857 469511230 469511147 1.240000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G151800 chr1D 211681344 211686774 5430 False 10030.000000 10030 100.000000 1 5431 1 chr1D.!!$F1 5430
1 TraesCS1D01G151800 chr1B 305173763 305178873 5110 True 2522.333333 3025 93.218333 5 5431 3 chr1B.!!$R2 5426
2 TraesCS1D01G151800 chr1A 267141229 267146566 5337 False 955.625000 2302 93.532750 5 5431 8 chr1A.!!$F1 5426
3 TraesCS1D01G151800 chr7B 467448607 467449406 799 True 551.000000 551 79.548000 2031 2859 1 chr7B.!!$R4 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 906 0.097150 GCTTCGAACGAATCCCAAGC 59.903 55.000 9.97 5.49 34.83 4.01 F
1377 1462 0.600255 AGGCCTTCGACTTCAACGTG 60.600 55.000 0.00 0.00 0.00 4.49 F
1473 1558 1.077787 GATTGACATCCACCCGGCA 60.078 57.895 0.00 0.00 0.00 5.69 F
3423 3602 0.034670 CTTCTGAAGGGGAGCCTTGG 60.035 60.000 9.57 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2483 1.376543 CGGCTAGAAGACCTACGACA 58.623 55.000 0.00 0.0 0.00 4.35 R
2946 3111 1.218047 GGACACGTCTGCCTGCATA 59.782 57.895 0.00 0.0 0.00 3.14 R
3440 3619 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
4843 5103 1.659601 CAGATCAGCGCAGAGAACAAG 59.340 52.381 11.47 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 34 4.876125 ACACACATTCTCCTATAGATGCG 58.124 43.478 0.00 0.00 33.05 4.73
36 40 6.648310 CACATTCTCCTATAGATGCGTTTGAT 59.352 38.462 0.00 0.00 33.05 2.57
41 45 3.859961 CCTATAGATGCGTTTGATAGGCG 59.140 47.826 0.00 0.00 40.49 5.52
73 77 7.370383 ACAACTTTTAAGATTGACGAATGCAT 58.630 30.769 0.00 0.00 0.00 3.96
76 80 7.023575 ACTTTTAAGATTGACGAATGCATCAC 58.976 34.615 0.00 0.00 0.00 3.06
193 197 0.099791 AAACGCTCAAAACGTGGGTG 59.900 50.000 0.00 0.00 44.30 4.61
203 207 4.473520 CGTGGGTGCCAGGCCTAG 62.474 72.222 3.98 0.00 32.34 3.02
206 210 3.015145 GGGTGCCAGGCCTAGGAA 61.015 66.667 21.37 10.98 0.00 3.36
266 270 1.273606 CCAATCACACTCGACTGGACT 59.726 52.381 0.00 0.00 0.00 3.85
339 343 1.669604 TTGCAACAAGGCTCGTGTTA 58.330 45.000 4.35 0.00 37.09 2.41
346 350 3.011119 ACAAGGCTCGTGTTACAAAACA 58.989 40.909 0.00 0.00 43.32 2.83
347 351 3.630312 ACAAGGCTCGTGTTACAAAACAT 59.370 39.130 0.00 0.00 46.84 2.71
355 359 4.804665 TCGTGTTACAAAACATCGAGAACA 59.195 37.500 9.96 0.00 46.84 3.18
362 366 9.607285 GTTACAAAACATCGAGAACAACATAAT 57.393 29.630 0.00 0.00 35.56 1.28
366 370 8.843733 CAAAACATCGAGAACAACATAATCTTG 58.156 33.333 0.00 0.00 0.00 3.02
389 393 0.389025 CAAAGGCCCAACAACTCACC 59.611 55.000 0.00 0.00 0.00 4.02
410 414 0.329596 AAGGGATCCAACTGCTGTCC 59.670 55.000 15.23 0.00 0.00 4.02
412 416 1.296715 GGATCCAACTGCTGTCCGT 59.703 57.895 6.95 0.00 0.00 4.69
441 445 1.021968 GAACAACAGTTCAGGCGGTT 58.978 50.000 3.66 0.00 40.99 4.44
452 456 2.985896 TCAGGCGGTTGATCTTTTAGG 58.014 47.619 0.00 0.00 0.00 2.69
470 478 1.978542 GGATTATCATCCGACGGACG 58.021 55.000 21.02 12.14 39.93 4.79
492 500 4.696899 CGTAGCCGGATAGTATCATGAA 57.303 45.455 5.05 0.00 0.00 2.57
493 501 4.413087 CGTAGCCGGATAGTATCATGAAC 58.587 47.826 5.05 0.00 0.00 3.18
507 546 2.037641 TCATGAACCGATATGAGCCCAG 59.962 50.000 0.00 0.00 0.00 4.45
637 715 0.822121 ACGTTTGCAAAGGAGACCCC 60.822 55.000 32.16 10.00 0.00 4.95
639 717 0.536460 GTTTGCAAAGGAGACCCCGA 60.536 55.000 13.26 0.00 40.87 5.14
696 774 6.588756 TCGTTAAGCGTAACATTCTGATTTCT 59.411 34.615 20.15 0.00 39.78 2.52
697 775 6.678663 CGTTAAGCGTAACATTCTGATTTCTG 59.321 38.462 20.15 0.00 39.78 3.02
698 776 4.606457 AGCGTAACATTCTGATTTCTGC 57.394 40.909 0.00 0.00 0.00 4.26
699 777 4.256920 AGCGTAACATTCTGATTTCTGCT 58.743 39.130 0.00 0.00 0.00 4.24
700 778 4.093998 AGCGTAACATTCTGATTTCTGCTG 59.906 41.667 0.00 0.00 0.00 4.41
701 779 4.337763 CGTAACATTCTGATTTCTGCTGC 58.662 43.478 0.00 0.00 0.00 5.25
774 856 4.334481 CGTCTTCTCCTTCTCTACCTTCTC 59.666 50.000 0.00 0.00 0.00 2.87
821 906 0.097150 GCTTCGAACGAATCCCAAGC 59.903 55.000 9.97 5.49 34.83 4.01
940 1025 3.088532 CCCTCTCCTAATCTGATCTCGG 58.911 54.545 0.00 0.00 0.00 4.63
1377 1462 0.600255 AGGCCTTCGACTTCAACGTG 60.600 55.000 0.00 0.00 0.00 4.49
1473 1558 1.077787 GATTGACATCCACCCGGCA 60.078 57.895 0.00 0.00 0.00 5.69
1566 1651 7.994911 TGTAATCTGATTGATCAAAGGCTACAT 59.005 33.333 13.09 0.00 36.18 2.29
1610 1695 7.792374 TGCTCCTTATCTGAAATATGTTCAC 57.208 36.000 0.00 0.00 0.00 3.18
1679 1764 9.747293 GTTTATCCAAGTAGGTGAAGTATCTAC 57.253 37.037 0.00 0.00 42.30 2.59
1707 1793 5.591643 TGCTACAAAATGTCGACTTCTTC 57.408 39.130 17.92 0.00 0.00 2.87
1708 1794 4.451096 TGCTACAAAATGTCGACTTCTTCC 59.549 41.667 17.92 0.00 0.00 3.46
1792 1878 8.863872 ATGTTACTAATTGCTTTGTACTTCCT 57.136 30.769 0.00 0.00 0.00 3.36
1793 1879 8.319143 TGTTACTAATTGCTTTGTACTTCCTC 57.681 34.615 0.00 0.00 0.00 3.71
1794 1880 8.154856 TGTTACTAATTGCTTTGTACTTCCTCT 58.845 33.333 0.00 0.00 0.00 3.69
1795 1881 8.443937 GTTACTAATTGCTTTGTACTTCCTCTG 58.556 37.037 0.00 0.00 0.00 3.35
1796 1882 6.534634 ACTAATTGCTTTGTACTTCCTCTGT 58.465 36.000 0.00 0.00 0.00 3.41
1797 1883 7.676947 ACTAATTGCTTTGTACTTCCTCTGTA 58.323 34.615 0.00 0.00 0.00 2.74
1798 1884 8.154856 ACTAATTGCTTTGTACTTCCTCTGTAA 58.845 33.333 0.00 0.00 0.00 2.41
1799 1885 7.817418 AATTGCTTTGTACTTCCTCTGTAAA 57.183 32.000 0.00 0.00 0.00 2.01
1800 1886 6.861065 TTGCTTTGTACTTCCTCTGTAAAG 57.139 37.500 0.00 0.00 0.00 1.85
1801 1887 6.169557 TGCTTTGTACTTCCTCTGTAAAGA 57.830 37.500 0.00 0.00 0.00 2.52
1802 1888 6.588204 TGCTTTGTACTTCCTCTGTAAAGAA 58.412 36.000 0.00 0.00 0.00 2.52
1803 1889 7.051623 TGCTTTGTACTTCCTCTGTAAAGAAA 58.948 34.615 0.00 0.00 0.00 2.52
1804 1890 7.719633 TGCTTTGTACTTCCTCTGTAAAGAAAT 59.280 33.333 0.00 0.00 0.00 2.17
1805 1891 9.216117 GCTTTGTACTTCCTCTGTAAAGAAATA 57.784 33.333 0.00 0.00 0.00 1.40
1812 1898 9.825109 ACTTCCTCTGTAAAGAAATATAAGAGC 57.175 33.333 0.00 0.00 0.00 4.09
1813 1899 8.873215 TTCCTCTGTAAAGAAATATAAGAGCG 57.127 34.615 0.00 0.00 0.00 5.03
1814 1900 6.924060 TCCTCTGTAAAGAAATATAAGAGCGC 59.076 38.462 0.00 0.00 0.00 5.92
1815 1901 6.926272 CCTCTGTAAAGAAATATAAGAGCGCT 59.074 38.462 11.27 11.27 0.00 5.92
1816 1902 7.439655 CCTCTGTAAAGAAATATAAGAGCGCTT 59.560 37.037 13.26 8.09 38.15 4.68
1817 1903 9.464714 CTCTGTAAAGAAATATAAGAGCGCTTA 57.535 33.333 13.26 12.50 40.65 3.09
1818 1904 9.464714 TCTGTAAAGAAATATAAGAGCGCTTAG 57.535 33.333 13.26 0.00 39.79 2.18
1819 1905 9.250624 CTGTAAAGAAATATAAGAGCGCTTAGT 57.749 33.333 13.26 1.96 39.79 2.24
1820 1906 9.031360 TGTAAAGAAATATAAGAGCGCTTAGTG 57.969 33.333 13.26 0.00 39.79 2.74
1821 1907 9.245962 GTAAAGAAATATAAGAGCGCTTAGTGA 57.754 33.333 13.26 4.22 39.79 3.41
1822 1908 8.894768 AAAGAAATATAAGAGCGCTTAGTGAT 57.105 30.769 13.26 3.88 39.79 3.06
1823 1909 8.527567 AAGAAATATAAGAGCGCTTAGTGATC 57.472 34.615 13.26 2.51 39.79 2.92
1824 1910 7.891561 AGAAATATAAGAGCGCTTAGTGATCT 58.108 34.615 13.26 7.81 40.62 2.75
1825 1911 9.015367 AGAAATATAAGAGCGCTTAGTGATCTA 57.985 33.333 13.26 0.00 37.84 1.98
1826 1912 9.627395 GAAATATAAGAGCGCTTAGTGATCTAA 57.373 33.333 13.26 3.86 37.84 2.10
1827 1913 9.982651 AAATATAAGAGCGCTTAGTGATCTAAA 57.017 29.630 13.26 6.27 37.84 1.85
1828 1914 8.973835 ATATAAGAGCGCTTAGTGATCTAAAC 57.026 34.615 13.26 0.00 37.84 2.01
1829 1915 3.696898 AGAGCGCTTAGTGATCTAAACG 58.303 45.455 13.26 6.47 43.90 3.60
1833 1919 3.696898 CGCTTAGTGATCTAAACGCTCT 58.303 45.455 0.00 0.00 38.34 4.09
1834 1920 4.106197 CGCTTAGTGATCTAAACGCTCTT 58.894 43.478 0.00 0.00 38.34 2.85
1835 1921 5.271625 CGCTTAGTGATCTAAACGCTCTTA 58.728 41.667 0.00 0.00 38.34 2.10
1836 1922 5.915758 CGCTTAGTGATCTAAACGCTCTTAT 59.084 40.000 0.00 0.00 38.34 1.73
1837 1923 7.076362 CGCTTAGTGATCTAAACGCTCTTATA 58.924 38.462 0.00 0.00 38.34 0.98
1838 1924 7.751348 CGCTTAGTGATCTAAACGCTCTTATAT 59.249 37.037 0.00 0.00 38.34 0.86
1839 1925 9.413048 GCTTAGTGATCTAAACGCTCTTATATT 57.587 33.333 0.00 0.00 35.98 1.28
1848 1934 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
1849 1935 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1850 1936 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1851 1937 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1852 1938 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1853 1939 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1854 1940 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1855 1941 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1856 1942 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
1897 1983 6.423182 AGCTTACTTGCCCACTTCATTATTA 58.577 36.000 0.00 0.00 0.00 0.98
1900 1986 7.467403 GCTTACTTGCCCACTTCATTATTACTC 60.467 40.741 0.00 0.00 0.00 2.59
2008 2095 6.152323 GCCCAATAGATGATGTAGATGCAAAT 59.848 38.462 0.00 0.00 0.00 2.32
2388 2483 1.286260 GAGCTCGTGGTCGTTGTCT 59.714 57.895 0.00 0.00 38.33 3.41
2419 2516 4.826404 TAGCCGCCGGAGCTACCA 62.826 66.667 19.46 3.56 41.83 3.25
2455 2553 2.031012 CTGTGACCAAGCCGAGCA 59.969 61.111 0.00 0.00 0.00 4.26
2605 2725 9.581099 TGATGATGATTTGTTTGAGATGATTTG 57.419 29.630 0.00 0.00 0.00 2.32
2714 2856 1.474077 GGCTGCCCTGTTTTACATCAG 59.526 52.381 7.66 0.00 0.00 2.90
2946 3111 2.064581 GGTGGGCCGTCCTGACTAT 61.065 63.158 9.84 0.00 36.20 2.12
3079 3256 1.202580 GCGTGCATCCCTAGTCTTGAT 60.203 52.381 0.00 0.00 0.00 2.57
3081 3258 3.858877 GCGTGCATCCCTAGTCTTGATAG 60.859 52.174 0.00 0.00 0.00 2.08
3131 3309 5.661056 TGCTGAGGGATATATTAAGACCG 57.339 43.478 0.00 0.00 0.00 4.79
3146 3324 0.674895 GACCGCATGAAGTGAAGGCT 60.675 55.000 0.00 0.00 32.47 4.58
3265 3444 7.011016 CGTTGTTAGATTGCACATATAGGTGAA 59.989 37.037 21.10 8.03 41.32 3.18
3309 3488 2.364970 CTGGCCAAAAATGGTGTCAGAA 59.635 45.455 7.01 0.00 0.00 3.02
3311 3490 3.390639 TGGCCAAAAATGGTGTCAGAAAT 59.609 39.130 0.61 0.00 0.00 2.17
3395 3574 5.539574 TGTCCATTGTCATTTTTCTCCATGT 59.460 36.000 0.00 0.00 0.00 3.21
3396 3575 5.865552 GTCCATTGTCATTTTTCTCCATGTG 59.134 40.000 0.00 0.00 0.00 3.21
3397 3576 5.539574 TCCATTGTCATTTTTCTCCATGTGT 59.460 36.000 0.00 0.00 0.00 3.72
3398 3577 6.718912 TCCATTGTCATTTTTCTCCATGTGTA 59.281 34.615 0.00 0.00 0.00 2.90
3399 3578 7.396907 TCCATTGTCATTTTTCTCCATGTGTAT 59.603 33.333 0.00 0.00 0.00 2.29
3400 3579 7.490079 CCATTGTCATTTTTCTCCATGTGTATG 59.510 37.037 0.00 0.00 0.00 2.39
3401 3580 7.523293 TTGTCATTTTTCTCCATGTGTATGT 57.477 32.000 0.00 0.00 32.21 2.29
3402 3581 8.628630 TTGTCATTTTTCTCCATGTGTATGTA 57.371 30.769 0.00 0.00 32.21 2.29
3403 3582 8.628630 TGTCATTTTTCTCCATGTGTATGTAA 57.371 30.769 0.00 0.00 32.21 2.41
3404 3583 8.511321 TGTCATTTTTCTCCATGTGTATGTAAC 58.489 33.333 0.00 0.00 32.21 2.50
3405 3584 8.730680 GTCATTTTTCTCCATGTGTATGTAACT 58.269 33.333 0.00 0.00 32.21 2.24
3406 3585 9.295825 TCATTTTTCTCCATGTGTATGTAACTT 57.704 29.630 0.00 0.00 32.21 2.66
3407 3586 9.559958 CATTTTTCTCCATGTGTATGTAACTTC 57.440 33.333 0.00 0.00 32.21 3.01
3408 3587 8.918202 TTTTTCTCCATGTGTATGTAACTTCT 57.082 30.769 0.00 0.00 32.21 2.85
3409 3588 7.905604 TTTCTCCATGTGTATGTAACTTCTG 57.094 36.000 0.00 0.00 32.21 3.02
3410 3589 6.850752 TCTCCATGTGTATGTAACTTCTGA 57.149 37.500 0.00 0.00 32.21 3.27
3411 3590 7.239763 TCTCCATGTGTATGTAACTTCTGAA 57.760 36.000 0.00 0.00 32.21 3.02
3412 3591 7.323420 TCTCCATGTGTATGTAACTTCTGAAG 58.677 38.462 15.59 15.59 32.21 3.02
3413 3592 6.406370 TCCATGTGTATGTAACTTCTGAAGG 58.594 40.000 20.61 4.16 32.21 3.46
3414 3593 5.586243 CCATGTGTATGTAACTTCTGAAGGG 59.414 44.000 20.61 4.55 32.21 3.95
3415 3594 5.160607 TGTGTATGTAACTTCTGAAGGGG 57.839 43.478 20.61 0.00 0.00 4.79
3416 3595 4.841813 TGTGTATGTAACTTCTGAAGGGGA 59.158 41.667 20.61 3.54 0.00 4.81
3417 3596 5.046591 TGTGTATGTAACTTCTGAAGGGGAG 60.047 44.000 20.61 0.00 0.00 4.30
3418 3597 3.636153 ATGTAACTTCTGAAGGGGAGC 57.364 47.619 20.61 7.37 0.00 4.70
3419 3598 1.628846 TGTAACTTCTGAAGGGGAGCC 59.371 52.381 20.61 4.15 0.00 4.70
3420 3599 1.909986 GTAACTTCTGAAGGGGAGCCT 59.090 52.381 20.61 0.00 0.00 4.58
3421 3600 1.450360 AACTTCTGAAGGGGAGCCTT 58.550 50.000 20.61 2.27 0.00 4.35
3422 3601 0.695347 ACTTCTGAAGGGGAGCCTTG 59.305 55.000 20.61 0.00 0.00 3.61
3423 3602 0.034670 CTTCTGAAGGGGAGCCTTGG 60.035 60.000 9.57 0.00 0.00 3.61
3424 3603 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
3425 3604 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
3433 3612 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3434 3613 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3435 3614 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3436 3615 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3437 3616 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3438 3617 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3439 3618 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3444 3623 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3445 3624 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3446 3625 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3447 3626 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3448 3627 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3449 3628 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3450 3629 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3451 3630 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3452 3631 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3453 3632 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3454 3633 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3455 3634 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3456 3635 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3457 3636 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3458 3637 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3468 3647 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3469 3648 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3470 3649 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3471 3650 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3472 3651 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3473 3652 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3474 3653 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3475 3654 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3476 3655 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3477 3656 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3478 3657 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3479 3658 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3480 3659 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3481 3660 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3482 3661 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3496 3675 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3497 3676 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3498 3677 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3499 3678 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3500 3679 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3501 3680 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3502 3681 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3503 3682 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3504 3683 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3505 3684 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3506 3685 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3507 3686 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3508 3687 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3509 3688 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3510 3689 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3511 3690 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3512 3691 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3513 3692 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3514 3693 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3515 3694 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3516 3695 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3517 3696 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3518 3697 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3519 3698 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3520 3699 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3521 3700 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3522 3701 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3523 3702 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3524 3703 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3525 3704 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3526 3705 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3527 3706 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3528 3707 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3529 3708 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3530 3709 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3531 3710 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3532 3711 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3533 3712 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3538 3717 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3539 3718 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3540 3719 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3541 3720 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3542 3721 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3543 3722 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3544 3723 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3545 3724 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3546 3725 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3547 3726 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3548 3727 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3549 3728 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3550 3729 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3551 3730 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3552 3731 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3553 3732 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3554 3733 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3555 3734 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3556 3735 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3557 3736 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3578 3757 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3579 3758 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3580 3759 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3581 3760 1.821332 GGAGCTACATGCACTGGGC 60.821 63.158 0.00 0.00 45.94 5.36
3582 3761 1.222936 GAGCTACATGCACTGGGCT 59.777 57.895 2.50 13.76 45.94 5.19
3583 3762 1.077930 AGCTACATGCACTGGGCTG 60.078 57.895 2.50 1.44 45.94 4.85
3584 3763 2.768492 GCTACATGCACTGGGCTGC 61.768 63.158 2.50 0.00 45.15 5.25
3585 3764 2.045045 TACATGCACTGGGCTGCC 60.045 61.111 11.05 11.05 45.15 4.85
3586 3765 3.643595 TACATGCACTGGGCTGCCC 62.644 63.158 30.97 30.97 45.71 5.36
3655 3834 6.173339 TGGTTGAAGCTTTGATAGAGTTAGG 58.827 40.000 0.00 0.00 0.00 2.69
3674 3853 9.614792 GAGTTAGGTTTCTGGTTATTATCACAT 57.385 33.333 0.00 0.00 0.00 3.21
3810 4070 9.026074 GCATGTTCTCTAATAGTAGTTTGTCTC 57.974 37.037 0.00 0.00 0.00 3.36
4297 4557 2.094675 GCCCAGCTTCTCATTTTGCTA 58.905 47.619 0.00 0.00 34.10 3.49
4306 4566 5.798934 GCTTCTCATTTTGCTATGTCTTGTG 59.201 40.000 0.00 0.00 0.00 3.33
4379 4639 3.921521 CGAAGCCTACCCTCGTCT 58.078 61.111 0.00 0.00 0.00 4.18
4382 4642 1.746516 CGAAGCCTACCCTCGTCTACT 60.747 57.143 0.00 0.00 0.00 2.57
4512 4772 5.471456 CACAAAATTTCTACTCACTGGAGCT 59.529 40.000 0.00 0.00 45.42 4.09
4635 4895 0.465097 CGCATGGATTCAGGGAGCTT 60.465 55.000 0.00 0.00 0.00 3.74
4843 5103 3.117046 GAGAACTAGAGCACGGTTATGC 58.883 50.000 0.00 0.00 46.50 3.14
4866 5126 1.859703 GTTCTCTGCGCTGATCTGATG 59.140 52.381 17.78 5.09 0.00 3.07
4923 5183 5.769662 TCTGGAATAGCAACATTGAACAGTT 59.230 36.000 0.00 0.00 0.00 3.16
4926 5186 5.858581 GGAATAGCAACATTGAACAGTTGTC 59.141 40.000 12.09 6.49 45.16 3.18
4959 5222 9.950496 ATGATTCTGAATATGAAGTGTATACCC 57.050 33.333 2.28 0.00 0.00 3.69
5008 5271 2.403252 ACCATTAGCAGAAGGGAACG 57.597 50.000 8.83 0.00 0.00 3.95
5033 5296 5.648178 ACAAGCAATATGTGAGCATTTCA 57.352 34.783 0.00 0.00 36.58 2.69
5055 5319 2.923426 ATACATGGACGCCAGCACCG 62.923 60.000 0.00 0.00 36.75 4.94
5062 5326 2.331019 GACGCCAGCACCGTTGTTTT 62.331 55.000 0.00 0.00 39.30 2.43
5063 5327 1.226831 CGCCAGCACCGTTGTTTTT 60.227 52.632 0.00 0.00 0.00 1.94
5173 5437 6.785191 ACGGTATCACAGCTTCAATAATTTG 58.215 36.000 0.00 0.00 0.00 2.32
5268 5609 9.440761 AACTTTATATGGATCAGAGGAAGTACT 57.559 33.333 0.00 0.00 0.00 2.73
5269 5610 9.440761 ACTTTATATGGATCAGAGGAAGTACTT 57.559 33.333 8.13 8.13 0.00 2.24
5396 5737 7.913297 GCTAAAACATTTGGCGACTATATTTCA 59.087 33.333 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.526713 GCATCTATAGGAGAATGTGTGTATATG 57.473 37.037 0.00 0.00 37.85 1.78
7 8 5.535030 ACGCATCTATAGGAGAATGTGTGTA 59.465 40.000 14.29 0.00 34.92 2.90
30 34 5.116882 AGTTGTTAGATCCGCCTATCAAAC 58.883 41.667 0.00 0.00 33.01 2.93
36 40 6.938507 TCTTAAAAGTTGTTAGATCCGCCTA 58.061 36.000 0.00 0.00 0.00 3.93
41 45 8.932791 TCGTCAATCTTAAAAGTTGTTAGATCC 58.067 33.333 0.00 0.00 0.00 3.36
73 77 5.657474 AGAAAGTGAGTTTAACGTCTGTGA 58.343 37.500 0.00 0.00 0.00 3.58
76 80 5.977725 TGAGAGAAAGTGAGTTTAACGTCTG 59.022 40.000 0.00 0.00 0.00 3.51
150 154 2.796483 TTTCGCCCTGATGACACGGG 62.796 60.000 2.62 2.62 37.45 5.28
193 197 1.280421 CATATCCTTCCTAGGCCTGGC 59.720 57.143 17.99 11.05 41.69 4.85
203 207 7.494625 TCAACGACTGTAATTTCATATCCTTCC 59.505 37.037 0.00 0.00 0.00 3.46
206 210 7.987458 ACATCAACGACTGTAATTTCATATCCT 59.013 33.333 0.00 0.00 0.00 3.24
266 270 9.890352 GCCAATTATTTGTAAAATCTTGCAAAA 57.110 25.926 0.00 0.00 46.05 2.44
307 311 3.289407 TGTTGCAATCCCCGATGAATA 57.711 42.857 0.59 0.00 0.00 1.75
311 315 0.457035 CCTTGTTGCAATCCCCGATG 59.543 55.000 0.59 0.00 0.00 3.84
312 316 1.322538 GCCTTGTTGCAATCCCCGAT 61.323 55.000 0.59 0.00 0.00 4.18
313 317 1.976474 GCCTTGTTGCAATCCCCGA 60.976 57.895 0.59 0.00 0.00 5.14
314 318 1.937546 GAGCCTTGTTGCAATCCCCG 61.938 60.000 0.59 0.00 0.00 5.73
315 319 1.893062 GAGCCTTGTTGCAATCCCC 59.107 57.895 0.59 0.00 0.00 4.81
339 343 8.099364 AGATTATGTTGTTCTCGATGTTTTGT 57.901 30.769 0.00 0.00 0.00 2.83
355 359 4.563374 GGGCCTTTGCAACAAGATTATGTT 60.563 41.667 0.84 0.00 44.08 2.71
362 366 0.463620 GTTGGGCCTTTGCAACAAGA 59.536 50.000 15.31 0.00 40.13 3.02
366 370 0.177836 AGTTGTTGGGCCTTTGCAAC 59.822 50.000 13.81 13.81 40.13 4.17
389 393 2.420687 GGACAGCAGTTGGATCCCTTAG 60.421 54.545 9.90 0.00 0.00 2.18
410 414 0.948623 TGTTGTTCGATGGAGCCACG 60.949 55.000 0.00 0.00 0.00 4.94
412 416 0.396435 ACTGTTGTTCGATGGAGCCA 59.604 50.000 0.00 0.00 0.00 4.75
441 445 7.090808 CGTCGGATGATAATCCTAAAAGATCA 58.909 38.462 7.55 0.00 38.57 2.92
452 456 1.337821 GCGTCCGTCGGATGATAATC 58.662 55.000 32.88 13.87 40.94 1.75
470 478 2.422479 TCATGATACTATCCGGCTACGC 59.578 50.000 0.00 0.00 39.22 4.42
485 493 2.639347 TGGGCTCATATCGGTTCATGAT 59.361 45.455 0.00 0.00 31.05 2.45
486 494 2.037641 CTGGGCTCATATCGGTTCATGA 59.962 50.000 0.00 0.00 0.00 3.07
487 495 2.420642 CTGGGCTCATATCGGTTCATG 58.579 52.381 0.00 0.00 0.00 3.07
488 496 1.349026 CCTGGGCTCATATCGGTTCAT 59.651 52.381 0.00 0.00 0.00 2.57
490 498 0.759346 ACCTGGGCTCATATCGGTTC 59.241 55.000 0.00 0.00 0.00 3.62
491 499 2.097110 TACCTGGGCTCATATCGGTT 57.903 50.000 0.00 0.00 0.00 4.44
492 500 2.327325 ATACCTGGGCTCATATCGGT 57.673 50.000 0.36 0.36 0.00 4.69
493 501 2.093447 GGAATACCTGGGCTCATATCGG 60.093 54.545 0.00 0.00 0.00 4.18
507 546 2.039084 CTCCTAGGCACCATGGAATACC 59.961 54.545 21.47 13.50 0.00 2.73
617 695 1.029681 GGGTCTCCTTTGCAAACGTT 58.970 50.000 8.05 0.00 0.00 3.99
637 715 4.868171 TGATCGGGATACTTTTCTGTTTCG 59.132 41.667 0.00 0.00 0.00 3.46
639 717 6.049955 TCTGATCGGGATACTTTTCTGTTT 57.950 37.500 0.62 0.00 0.00 2.83
774 856 1.006998 TGGATTGGGTTCTTGATGGGG 59.993 52.381 0.00 0.00 0.00 4.96
821 906 2.489938 TGAAACCTCTTGGGGAATCG 57.510 50.000 0.00 0.00 40.03 3.34
940 1025 1.512926 ATCGAATAGACAATGGCCGC 58.487 50.000 0.00 0.00 0.00 6.53
1377 1462 3.432051 CTCGTGATCCGACAGGGCC 62.432 68.421 0.00 0.00 41.60 5.80
1473 1558 1.448540 CTTGAGCCGGCGATTCACT 60.449 57.895 23.20 0.00 0.00 3.41
1566 1651 5.669477 AGCAACTAATTTGGCAGTGAAAAA 58.331 33.333 0.00 0.00 35.51 1.94
1679 1764 4.568359 AGTCGACATTTTGTAGCAGCATAG 59.432 41.667 19.50 0.00 0.00 2.23
1707 1793 7.060421 TCTACTGGCCCTTATTATTTTGAAGG 58.940 38.462 0.00 0.00 39.64 3.46
1708 1794 8.519799 TTCTACTGGCCCTTATTATTTTGAAG 57.480 34.615 0.00 0.00 0.00 3.02
1787 1873 8.973378 CGCTCTTATATTTCTTTACAGAGGAAG 58.027 37.037 0.00 0.00 0.00 3.46
1788 1874 7.438459 GCGCTCTTATATTTCTTTACAGAGGAA 59.562 37.037 0.00 0.00 0.00 3.36
1789 1875 6.924060 GCGCTCTTATATTTCTTTACAGAGGA 59.076 38.462 0.00 0.00 0.00 3.71
1790 1876 6.926272 AGCGCTCTTATATTTCTTTACAGAGG 59.074 38.462 2.64 0.00 0.00 3.69
1791 1877 7.938563 AGCGCTCTTATATTTCTTTACAGAG 57.061 36.000 2.64 0.00 0.00 3.35
1792 1878 9.464714 CTAAGCGCTCTTATATTTCTTTACAGA 57.535 33.333 12.06 0.00 34.54 3.41
1793 1879 9.250624 ACTAAGCGCTCTTATATTTCTTTACAG 57.749 33.333 12.06 0.00 34.54 2.74
1794 1880 9.031360 CACTAAGCGCTCTTATATTTCTTTACA 57.969 33.333 12.06 0.00 34.54 2.41
1795 1881 9.245962 TCACTAAGCGCTCTTATATTTCTTTAC 57.754 33.333 12.06 0.00 34.54 2.01
1796 1882 9.982651 ATCACTAAGCGCTCTTATATTTCTTTA 57.017 29.630 12.06 0.00 34.54 1.85
1797 1883 8.894768 ATCACTAAGCGCTCTTATATTTCTTT 57.105 30.769 12.06 0.00 34.54 2.52
1798 1884 8.364142 AGATCACTAAGCGCTCTTATATTTCTT 58.636 33.333 12.06 0.00 34.54 2.52
1799 1885 7.891561 AGATCACTAAGCGCTCTTATATTTCT 58.108 34.615 12.06 4.12 34.54 2.52
1800 1886 9.627395 TTAGATCACTAAGCGCTCTTATATTTC 57.373 33.333 12.06 1.60 34.54 2.17
1801 1887 9.982651 TTTAGATCACTAAGCGCTCTTATATTT 57.017 29.630 12.06 0.23 39.36 1.40
1802 1888 9.413048 GTTTAGATCACTAAGCGCTCTTATATT 57.587 33.333 12.06 0.00 39.36 1.28
1803 1889 8.973835 GTTTAGATCACTAAGCGCTCTTATAT 57.026 34.615 12.06 1.74 39.36 0.86
1813 1899 8.973835 ATATAAGAGCGTTTAGATCACTAAGC 57.026 34.615 0.00 0.00 39.36 3.09
1822 1908 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1823 1909 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1824 1910 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1825 1911 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1826 1912 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1827 1913 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
1828 1914 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1829 1915 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1830 1916 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1831 1917 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1832 1918 9.640963 CATACTCCCTCCGTAAAGAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
1833 1919 9.370930 TCATACTCCCTCCGTAAAGAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
1834 1920 8.800332 GTCATACTCCCTCCGTAAAGAAATATA 58.200 37.037 0.00 0.00 0.00 0.86
1835 1921 7.289317 TGTCATACTCCCTCCGTAAAGAAATAT 59.711 37.037 0.00 0.00 0.00 1.28
1836 1922 6.608405 TGTCATACTCCCTCCGTAAAGAAATA 59.392 38.462 0.00 0.00 0.00 1.40
1837 1923 5.424252 TGTCATACTCCCTCCGTAAAGAAAT 59.576 40.000 0.00 0.00 0.00 2.17
1838 1924 4.773674 TGTCATACTCCCTCCGTAAAGAAA 59.226 41.667 0.00 0.00 0.00 2.52
1839 1925 4.346730 TGTCATACTCCCTCCGTAAAGAA 58.653 43.478 0.00 0.00 0.00 2.52
1840 1926 3.972133 TGTCATACTCCCTCCGTAAAGA 58.028 45.455 0.00 0.00 0.00 2.52
1841 1927 4.939052 ATGTCATACTCCCTCCGTAAAG 57.061 45.455 0.00 0.00 0.00 1.85
1842 1928 5.424757 CAAATGTCATACTCCCTCCGTAAA 58.575 41.667 0.00 0.00 0.00 2.01
1843 1929 4.141801 CCAAATGTCATACTCCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
1844 1930 3.386726 CCAAATGTCATACTCCCTCCGTA 59.613 47.826 0.00 0.00 0.00 4.02
1845 1931 2.170607 CCAAATGTCATACTCCCTCCGT 59.829 50.000 0.00 0.00 0.00 4.69
1846 1932 2.170607 ACCAAATGTCATACTCCCTCCG 59.829 50.000 0.00 0.00 0.00 4.63
1847 1933 3.199946 TCACCAAATGTCATACTCCCTCC 59.800 47.826 0.00 0.00 0.00 4.30
1848 1934 4.487714 TCACCAAATGTCATACTCCCTC 57.512 45.455 0.00 0.00 0.00 4.30
1849 1935 6.770286 ATATCACCAAATGTCATACTCCCT 57.230 37.500 0.00 0.00 0.00 4.20
1850 1936 6.595716 GCTATATCACCAAATGTCATACTCCC 59.404 42.308 0.00 0.00 0.00 4.30
1851 1937 7.390027 AGCTATATCACCAAATGTCATACTCC 58.610 38.462 0.00 0.00 0.00 3.85
1852 1938 8.839310 AAGCTATATCACCAAATGTCATACTC 57.161 34.615 0.00 0.00 0.00 2.59
1853 1939 9.712305 GTAAGCTATATCACCAAATGTCATACT 57.288 33.333 0.00 0.00 0.00 2.12
1854 1940 9.712305 AGTAAGCTATATCACCAAATGTCATAC 57.288 33.333 0.00 0.00 0.00 2.39
1856 1942 9.060347 CAAGTAAGCTATATCACCAAATGTCAT 57.940 33.333 0.00 0.00 0.00 3.06
1897 1983 4.528076 TGCTCTAAGTGGGAGATAGAGT 57.472 45.455 9.91 0.00 42.90 3.24
1900 1986 4.462483 GGAGATGCTCTAAGTGGGAGATAG 59.538 50.000 0.00 0.00 33.03 2.08
2017 2104 4.214119 TCATGGAGAAAACTCGAGCAAAAG 59.786 41.667 13.61 0.00 0.00 2.27
2018 2105 4.133820 TCATGGAGAAAACTCGAGCAAAA 58.866 39.130 13.61 0.00 0.00 2.44
2019 2106 3.738982 TCATGGAGAAAACTCGAGCAAA 58.261 40.909 13.61 0.00 0.00 3.68
2119 2207 2.876879 CGTTTCGCGTGGCAGTTGA 61.877 57.895 5.77 0.00 35.54 3.18
2346 2441 4.758251 CCATCACAGGCGTCGGCA 62.758 66.667 21.79 0.00 42.47 5.69
2367 2462 4.719369 AACGACCACGAGCTCCGC 62.719 66.667 8.47 0.00 43.32 5.54
2368 2463 2.805353 CAACGACCACGAGCTCCG 60.805 66.667 8.47 7.98 42.66 4.63
2384 2479 3.008330 GCTAGAAGACCTACGACAGACA 58.992 50.000 0.00 0.00 0.00 3.41
2388 2483 1.376543 CGGCTAGAAGACCTACGACA 58.623 55.000 0.00 0.00 0.00 4.35
2439 2537 2.031012 CTGCTCGGCTTGGTCACA 59.969 61.111 0.00 0.00 0.00 3.58
2441 2539 3.630013 AGCTGCTCGGCTTGGTCA 61.630 61.111 0.00 0.00 39.86 4.02
2458 2556 4.393155 ATGCCGACCGAAGCAGCA 62.393 61.111 0.00 0.00 43.38 4.41
2714 2856 6.667558 ATAGGGTACTAGTGCTCCAATAAC 57.332 41.667 7.29 0.00 31.54 1.89
2946 3111 1.218047 GGACACGTCTGCCTGCATA 59.782 57.895 0.00 0.00 0.00 3.14
3079 3256 1.758592 GGTGTGCAAGTGGGTCCTA 59.241 57.895 0.00 0.00 0.00 2.94
3081 3258 2.978010 CGGTGTGCAAGTGGGTCC 60.978 66.667 0.00 0.00 0.00 4.46
3131 3309 1.742761 TAGCAGCCTTCACTTCATGC 58.257 50.000 0.00 0.00 0.00 4.06
3146 3324 6.964807 ACCAAATTCATTGCATCTATAGCA 57.035 33.333 0.00 0.00 40.85 3.49
3265 3444 3.444792 AAGCCAGTAACCGGGTAATTT 57.555 42.857 0.00 0.00 32.79 1.82
3309 3488 7.727181 AGAACCTAGATCGCTACATACAAATT 58.273 34.615 0.00 0.00 0.00 1.82
3311 3490 6.710597 AGAACCTAGATCGCTACATACAAA 57.289 37.500 0.00 0.00 0.00 2.83
3395 3574 4.081087 GCTCCCCTTCAGAAGTTACATACA 60.081 45.833 9.41 0.00 0.00 2.29
3396 3575 4.443621 GCTCCCCTTCAGAAGTTACATAC 58.556 47.826 9.41 0.00 0.00 2.39
3397 3576 3.454812 GGCTCCCCTTCAGAAGTTACATA 59.545 47.826 9.41 0.00 0.00 2.29
3398 3577 2.239907 GGCTCCCCTTCAGAAGTTACAT 59.760 50.000 9.41 0.00 0.00 2.29
3399 3578 1.628846 GGCTCCCCTTCAGAAGTTACA 59.371 52.381 9.41 0.00 0.00 2.41
3400 3579 1.909986 AGGCTCCCCTTCAGAAGTTAC 59.090 52.381 9.41 0.00 38.74 2.50
3401 3580 2.344093 AGGCTCCCCTTCAGAAGTTA 57.656 50.000 9.41 0.00 38.74 2.24
3402 3581 3.188748 AGGCTCCCCTTCAGAAGTT 57.811 52.632 9.41 0.00 38.74 2.66
3415 3594 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3416 3595 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3417 3596 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3418 3597 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3419 3598 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3420 3599 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3421 3600 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3422 3601 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3426 3605 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3427 3606 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3428 3607 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3429 3608 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3430 3609 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3431 3610 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3432 3611 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3433 3612 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3434 3613 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3435 3614 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3436 3615 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3437 3616 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3438 3617 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3439 3618 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3440 3619 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3441 3620 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3452 3631 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3453 3632 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3454 3633 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3455 3634 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3456 3635 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3457 3636 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3458 3637 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3459 3638 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3460 3639 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3461 3640 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3462 3641 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3463 3642 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3464 3643 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3465 3644 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3466 3645 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3467 3646 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3468 3647 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3469 3648 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3470 3649 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3471 3650 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3472 3651 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3473 3652 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3474 3653 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3486 3665 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3487 3666 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3488 3667 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3489 3668 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3490 3669 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3491 3670 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3492 3671 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3493 3672 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3494 3673 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3495 3674 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3496 3675 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3497 3676 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3498 3677 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3499 3678 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3500 3679 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3501 3680 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3502 3681 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3503 3682 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3504 3683 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3505 3684 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3506 3685 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3507 3686 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3508 3687 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3509 3688 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3510 3689 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3511 3690 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3512 3691 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3522 3701 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3523 3702 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3524 3703 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3525 3704 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3526 3705 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3527 3706 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3528 3707 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3529 3708 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3530 3709 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3531 3710 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3532 3711 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3533 3712 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3534 3713 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3535 3714 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3536 3715 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3537 3716 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3538 3717 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3539 3718 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3540 3719 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3552 3731 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3555 3734 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3556 3735 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3557 3736 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3558 3737 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3560 3739 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3561 3740 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3562 3741 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3563 3742 1.821332 GCCCAGTGCATGTAGCTCC 60.821 63.158 0.00 0.00 45.94 4.70
3564 3743 1.094073 CAGCCCAGTGCATGTAGCTC 61.094 60.000 0.00 0.00 45.94 4.09
3565 3744 1.077930 CAGCCCAGTGCATGTAGCT 60.078 57.895 0.00 0.00 45.94 3.32
3566 3745 2.768492 GCAGCCCAGTGCATGTAGC 61.768 63.158 0.00 0.00 43.41 3.58
3567 3746 2.117156 GGCAGCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 45.93 2.74
3568 3747 2.045045 GGCAGCCCAGTGCATGTA 60.045 61.111 0.00 0.00 45.93 2.29
3593 3772 8.621532 AGATGAGCAGAAGTTACATACAAAAA 57.378 30.769 0.00 0.00 0.00 1.94
3594 3773 9.371136 CTAGATGAGCAGAAGTTACATACAAAA 57.629 33.333 0.00 0.00 0.00 2.44
3595 3774 8.932945 CTAGATGAGCAGAAGTTACATACAAA 57.067 34.615 0.00 0.00 0.00 2.83
3621 3800 3.902881 AGCTTCAACCATCTAGGACTG 57.097 47.619 0.00 0.00 41.22 3.51
3634 3813 8.157476 AGAAACCTAACTCTATCAAAGCTTCAA 58.843 33.333 0.00 0.00 0.00 2.69
3655 3834 8.050778 TCAACCATGTGATAATAACCAGAAAC 57.949 34.615 0.00 0.00 0.00 2.78
3674 3853 9.283768 GGTGTATCATATCACAAATATCAACCA 57.716 33.333 0.00 0.00 36.43 3.67
3810 4070 5.308237 ACCCTGATGGCTTAACCTCTTATAG 59.692 44.000 0.00 0.00 40.22 1.31
3840 4100 3.853475 GCATCAGGCAAAAGCATTAGTT 58.147 40.909 0.00 0.00 43.97 2.24
4037 4297 4.641645 CCTGGCGGTGGTGCAAGA 62.642 66.667 0.00 0.00 38.22 3.02
4228 4488 5.403246 CAAGAAGCGTAGAGATTGTAGTGT 58.597 41.667 0.00 0.00 0.00 3.55
4297 4557 2.071778 AAGCCACCAACACAAGACAT 57.928 45.000 0.00 0.00 0.00 3.06
4306 4566 2.084546 GGAGATGTGTAAGCCACCAAC 58.915 52.381 0.00 0.00 43.85 3.77
4376 4636 4.067972 TGTTTGTCCCAGTTCAGTAGAC 57.932 45.455 0.00 0.00 0.00 2.59
4379 4639 5.393678 GCTTTTTGTTTGTCCCAGTTCAGTA 60.394 40.000 0.00 0.00 0.00 2.74
4382 4642 3.259374 TGCTTTTTGTTTGTCCCAGTTCA 59.741 39.130 0.00 0.00 0.00 3.18
4469 4729 6.561737 TTGTGTACTTTTTCAGTCACACAA 57.438 33.333 12.58 12.58 45.50 3.33
4635 4895 8.792830 ATTCAGGAAAATATTCAGACTTTCGA 57.207 30.769 0.00 0.00 37.29 3.71
4843 5103 1.659601 CAGATCAGCGCAGAGAACAAG 59.340 52.381 11.47 0.00 0.00 3.16
4923 5183 7.576403 TCATATTCAGAATCATTCTTGGGACA 58.424 34.615 0.00 0.00 38.11 4.02
4926 5186 8.350722 CACTTCATATTCAGAATCATTCTTGGG 58.649 37.037 0.00 0.00 38.11 4.12
5008 5271 6.587226 TGAAATGCTCACATATTGCTTGTTTC 59.413 34.615 0.00 0.00 34.62 2.78
5072 5336 4.941263 TCATGCTGGCGTCTACTTAAAAAT 59.059 37.500 0.00 0.00 0.00 1.82
5074 5338 3.932822 TCATGCTGGCGTCTACTTAAAA 58.067 40.909 0.00 0.00 0.00 1.52
5173 5437 5.975693 TCCATTGACAATCTAACAAACCC 57.024 39.130 0.00 0.00 0.00 4.11
5396 5737 3.887335 TTTTAGGCCCGAGCGCGTT 62.887 57.895 8.43 0.00 41.24 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.