Multiple sequence alignment - TraesCS1D01G150900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G150900 chr1D 100.000 4881 0 0 1 4881 208819109 208823989 0.000000e+00 9014.0
1 TraesCS1D01G150900 chr1D 96.395 2968 78 9 1426 4378 228304294 228301341 0.000000e+00 4861.0
2 TraesCS1D01G150900 chr1D 97.534 365 8 1 999 1362 228304657 228304293 1.490000e-174 623.0
3 TraesCS1D01G150900 chr1D 96.286 350 9 2 4434 4782 228301344 228300998 5.480000e-159 571.0
4 TraesCS1D01G150900 chr1D 97.403 308 7 1 695 1001 208818771 208818464 1.560000e-144 523.0
5 TraesCS1D01G150900 chr1D 89.571 163 14 2 4713 4873 228301167 228301006 2.300000e-48 204.0
6 TraesCS1D01G150900 chr1D 87.151 179 18 4 4698 4873 208823707 208823883 1.070000e-46 198.0
7 TraesCS1D01G150900 chr1D 87.151 179 18 4 4599 4775 208823806 208823981 1.070000e-46 198.0
8 TraesCS1D01G150900 chr1D 94.872 39 2 0 4246 4284 8798008 8798046 1.470000e-05 62.1
9 TraesCS1D01G150900 chr1B 94.487 3374 111 25 1426 4782 327844898 327841583 0.000000e+00 5131.0
10 TraesCS1D01G150900 chr1B 98.082 365 6 1 999 1362 327845261 327844897 6.890000e-178 634.0
11 TraesCS1D01G150900 chr1A 90.537 2177 103 27 2632 4777 296213719 296211615 0.000000e+00 2784.0
12 TraesCS1D01G150900 chr1A 93.725 1243 57 6 1404 2632 296215035 296213800 0.000000e+00 1844.0
13 TraesCS1D01G150900 chr1A 96.316 380 13 1 999 1377 296215414 296215035 1.490000e-174 623.0
14 TraesCS1D01G150900 chr1A 90.426 94 8 1 4789 4881 296211701 296211608 6.630000e-24 122.0
15 TraesCS1D01G150900 chr5D 98.972 778 6 2 1 778 459340719 459339944 0.000000e+00 1391.0
16 TraesCS1D01G150900 chr5D 74.113 282 60 12 331 607 499226299 499226572 2.400000e-18 104.0
17 TraesCS1D01G150900 chr5B 96.382 774 22 4 10 778 563606460 563605688 0.000000e+00 1269.0
18 TraesCS1D01G150900 chr5B 94.850 233 10 2 773 1003 571550387 571550155 3.590000e-96 363.0
19 TraesCS1D01G150900 chr5B 93.506 231 14 1 770 999 571860935 571861165 4.680000e-90 342.0
20 TraesCS1D01G150900 chr5B 94.444 180 9 1 821 999 571550599 571550420 4.810000e-70 276.0
21 TraesCS1D01G150900 chr5B 93.333 180 11 1 821 999 571859829 571859650 1.040000e-66 265.0
22 TraesCS1D01G150900 chr5B 73.571 280 65 9 331 607 619854912 619855185 1.120000e-16 99.0
23 TraesCS1D01G150900 chr5A 96.010 777 23 4 9 781 578956744 578955972 0.000000e+00 1256.0
24 TraesCS1D01G150900 chr5A 73.260 273 60 12 340 607 623493114 623493378 2.420000e-13 87.9
25 TraesCS1D01G150900 chr5A 95.652 46 1 1 770 814 73832827 73832872 6.780000e-09 73.1
26 TraesCS1D01G150900 chr2D 93.333 180 11 1 820 998 119022503 119022682 1.040000e-66 265.0
27 TraesCS1D01G150900 chr6A 91.620 179 15 0 820 998 66391878 66391700 1.050000e-61 248.0
28 TraesCS1D01G150900 chr6A 91.061 179 16 0 821 999 1654369 1654547 4.880000e-60 243.0
29 TraesCS1D01G150900 chr6A 97.059 34 0 1 4243 4276 374413687 374413655 6.830000e-04 56.5
30 TraesCS1D01G150900 chr3D 91.620 179 14 1 821 998 526149334 526149156 3.770000e-61 246.0
31 TraesCS1D01G150900 chr3D 92.500 40 1 2 4250 4288 445342978 445342940 6.830000e-04 56.5
32 TraesCS1D01G150900 chr7A 85.246 61 7 2 4217 4277 616747174 616747232 1.470000e-05 62.1
33 TraesCS1D01G150900 chr7A 86.667 60 1 5 4222 4276 54191243 54191300 5.280000e-05 60.2
34 TraesCS1D01G150900 chr6B 86.441 59 2 5 4217 4275 49827855 49827907 5.280000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G150900 chr1D 208819109 208823989 4880 False 3136.666667 9014 91.4340 1 4881 3 chr1D.!!$F2 4880
1 TraesCS1D01G150900 chr1D 228300998 228304657 3659 True 1564.750000 4861 94.9465 999 4873 4 chr1D.!!$R2 3874
2 TraesCS1D01G150900 chr1B 327841583 327845261 3678 True 2882.500000 5131 96.2845 999 4782 2 chr1B.!!$R1 3783
3 TraesCS1D01G150900 chr1A 296211608 296215414 3806 True 1343.250000 2784 92.7510 999 4881 4 chr1A.!!$R1 3882
4 TraesCS1D01G150900 chr5D 459339944 459340719 775 True 1391.000000 1391 98.9720 1 778 1 chr5D.!!$R1 777
5 TraesCS1D01G150900 chr5B 563605688 563606460 772 True 1269.000000 1269 96.3820 10 778 1 chr5B.!!$R1 768
6 TraesCS1D01G150900 chr5A 578955972 578956744 772 True 1256.000000 1256 96.0100 9 781 1 chr5A.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 902 0.166814 ACGAGTTACCGTACGCTGAC 59.833 55.000 10.49 3.27 41.44 3.51 F
1022 1028 0.031857 CTCCAGATACGCCTGAGCAG 59.968 60.000 0.00 0.00 39.83 4.24 F
1306 1312 0.105964 CGAGTTCCCCATCGCCATTA 59.894 55.000 0.00 0.00 31.42 1.90 F
1403 1410 0.687920 TGTGCGGTGGGTGATAAAGA 59.312 50.000 0.00 0.00 0.00 2.52 F
3238 3342 1.064017 CCCCCTATGCTAAGCAAACCA 60.064 52.381 0.00 0.00 43.62 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2127 1.045407 TAGGGACATACGACATGGCC 58.955 55.000 15.68 15.68 46.51 5.36 R
2715 2818 2.094752 CGGGGGAAAACTACAATTGCTG 60.095 50.000 5.05 0.80 0.00 4.41 R
3279 3383 1.332686 GAGGTGTGTTGTTTTCGGACC 59.667 52.381 0.00 0.00 0.00 4.46 R
3316 3420 0.106569 CATCATGGGCCCAGCTGTAA 60.107 55.000 31.97 9.97 0.00 2.41 R
4795 4931 0.037326 CACACGTATGACCCTGTGCT 60.037 55.000 0.00 0.00 35.79 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 7.922278 CAGAATGTTCAACAAAGAAGATTGGAA 59.078 33.333 0.00 0.00 40.34 3.53
790 796 4.891727 CCGAGCCGTCCCGAATGG 62.892 72.222 0.00 0.00 37.07 3.16
800 806 3.738481 CCGAATGGGCAGGGGGAA 61.738 66.667 0.00 0.00 0.00 3.97
801 807 2.603008 CGAATGGGCAGGGGGAAT 59.397 61.111 0.00 0.00 0.00 3.01
802 808 1.715019 CCGAATGGGCAGGGGGAATA 61.715 60.000 0.00 0.00 0.00 1.75
803 809 0.405585 CGAATGGGCAGGGGGAATAT 59.594 55.000 0.00 0.00 0.00 1.28
804 810 1.887956 CGAATGGGCAGGGGGAATATG 60.888 57.143 0.00 0.00 0.00 1.78
805 811 0.178924 AATGGGCAGGGGGAATATGC 60.179 55.000 0.00 0.00 39.25 3.14
806 812 1.370651 ATGGGCAGGGGGAATATGCA 61.371 55.000 0.00 0.00 41.78 3.96
807 813 1.232792 GGGCAGGGGGAATATGCAA 59.767 57.895 0.00 0.00 41.78 4.08
808 814 0.398381 GGGCAGGGGGAATATGCAAA 60.398 55.000 0.00 0.00 41.78 3.68
809 815 1.494960 GGCAGGGGGAATATGCAAAA 58.505 50.000 0.00 0.00 41.78 2.44
810 816 1.138859 GGCAGGGGGAATATGCAAAAC 59.861 52.381 0.00 0.00 41.78 2.43
811 817 2.110578 GCAGGGGGAATATGCAAAACT 58.889 47.619 0.00 0.00 39.75 2.66
812 818 2.159057 GCAGGGGGAATATGCAAAACTG 60.159 50.000 0.00 0.00 39.75 3.16
813 819 2.110578 AGGGGGAATATGCAAAACTGC 58.889 47.619 0.00 0.00 0.00 4.40
821 827 2.413677 TGCAAAACTGCACGATGGT 58.586 47.368 0.00 0.00 40.23 3.55
822 828 0.310543 TGCAAAACTGCACGATGGTC 59.689 50.000 0.00 0.00 40.23 4.02
823 829 0.310543 GCAAAACTGCACGATGGTCA 59.689 50.000 0.00 0.00 34.41 4.02
824 830 1.268999 GCAAAACTGCACGATGGTCAA 60.269 47.619 0.00 0.00 34.41 3.18
825 831 2.797792 GCAAAACTGCACGATGGTCAAA 60.798 45.455 0.00 0.00 34.41 2.69
826 832 2.774439 AAACTGCACGATGGTCAAAC 57.226 45.000 0.00 0.00 0.00 2.93
827 833 0.951558 AACTGCACGATGGTCAAACC 59.048 50.000 0.00 0.00 39.22 3.27
828 834 1.227999 ACTGCACGATGGTCAAACCG 61.228 55.000 0.00 0.00 42.58 4.44
829 835 1.227704 TGCACGATGGTCAAACCGT 60.228 52.632 0.00 0.00 42.58 4.83
830 836 0.816018 TGCACGATGGTCAAACCGTT 60.816 50.000 0.00 0.00 42.58 4.44
831 837 0.309612 GCACGATGGTCAAACCGTTT 59.690 50.000 0.00 0.00 42.58 3.60
832 838 1.268845 GCACGATGGTCAAACCGTTTT 60.269 47.619 0.00 0.00 42.58 2.43
833 839 2.796735 GCACGATGGTCAAACCGTTTTT 60.797 45.455 0.00 0.00 42.58 1.94
834 840 2.786578 CACGATGGTCAAACCGTTTTTG 59.213 45.455 0.00 1.24 42.58 2.44
835 841 2.223618 ACGATGGTCAAACCGTTTTTGG 60.224 45.455 6.84 0.00 42.58 3.28
836 842 2.749776 GATGGTCAAACCGTTTTTGGG 58.250 47.619 6.84 0.00 42.58 4.12
837 843 1.558233 TGGTCAAACCGTTTTTGGGT 58.442 45.000 6.84 0.00 42.58 4.51
838 844 1.477295 TGGTCAAACCGTTTTTGGGTC 59.523 47.619 6.84 0.49 42.58 4.46
839 845 1.477295 GGTCAAACCGTTTTTGGGTCA 59.523 47.619 6.84 0.00 36.57 4.02
840 846 2.094130 GGTCAAACCGTTTTTGGGTCAA 60.094 45.455 6.84 0.00 36.57 3.18
841 847 3.586892 GTCAAACCGTTTTTGGGTCAAA 58.413 40.909 6.84 0.00 36.57 2.69
842 848 4.185394 GTCAAACCGTTTTTGGGTCAAAT 58.815 39.130 6.84 0.00 36.57 2.32
843 849 5.349809 GTCAAACCGTTTTTGGGTCAAATA 58.650 37.500 6.84 0.00 36.57 1.40
844 850 5.232626 GTCAAACCGTTTTTGGGTCAAATAC 59.767 40.000 6.84 4.62 36.57 1.89
849 855 5.093169 CGTTTTTGGGTCAAATACGTACA 57.907 39.130 20.00 0.00 45.84 2.90
850 856 4.905295 CGTTTTTGGGTCAAATACGTACAC 59.095 41.667 20.00 0.00 45.84 2.90
851 857 4.728917 TTTTGGGTCAAATACGTACACG 57.271 40.909 0.00 0.00 38.03 4.49
866 872 5.092524 CGTACACGTGTGTAAAATACGAG 57.907 43.478 30.83 3.97 45.39 4.18
867 873 4.487630 CGTACACGTGTGTAAAATACGAGC 60.488 45.833 30.83 1.66 45.39 5.03
868 874 2.733026 ACACGTGTGTAAAATACGAGCC 59.267 45.455 22.71 0.00 45.39 4.70
869 875 1.987770 ACGTGTGTAAAATACGAGCCG 59.012 47.619 0.00 0.00 45.39 5.52
870 876 2.252747 CGTGTGTAAAATACGAGCCGA 58.747 47.619 1.50 0.00 45.39 5.54
871 877 2.662637 CGTGTGTAAAATACGAGCCGAA 59.337 45.455 1.50 0.00 45.39 4.30
872 878 3.121611 CGTGTGTAAAATACGAGCCGAAA 59.878 43.478 1.50 0.00 45.39 3.46
873 879 4.388790 GTGTGTAAAATACGAGCCGAAAC 58.611 43.478 1.50 0.00 0.00 2.78
874 880 3.121611 TGTGTAAAATACGAGCCGAAACG 59.878 43.478 1.50 0.00 0.00 3.60
895 901 1.720805 TACGAGTTACCGTACGCTGA 58.279 50.000 10.49 0.00 43.20 4.26
896 902 0.166814 ACGAGTTACCGTACGCTGAC 59.833 55.000 10.49 3.27 41.44 3.51
897 903 0.522076 CGAGTTACCGTACGCTGACC 60.522 60.000 10.49 0.00 0.00 4.02
898 904 0.179153 GAGTTACCGTACGCTGACCC 60.179 60.000 10.49 0.00 0.00 4.46
899 905 1.514873 GTTACCGTACGCTGACCCG 60.515 63.158 10.49 0.00 0.00 5.28
900 906 2.699768 TTACCGTACGCTGACCCGG 61.700 63.158 10.49 0.00 45.72 5.73
902 908 4.060038 CCGTACGCTGACCCGGTT 62.060 66.667 10.49 0.00 35.78 4.44
903 909 2.505557 CGTACGCTGACCCGGTTC 60.506 66.667 0.52 0.00 0.00 3.62
904 910 2.652530 GTACGCTGACCCGGTTCA 59.347 61.111 0.27 0.27 0.00 3.18
905 911 1.445582 GTACGCTGACCCGGTTCAG 60.446 63.158 23.73 23.73 45.15 3.02
909 915 2.125912 CTGACCCGGTTCAGCGAG 60.126 66.667 16.73 0.00 36.83 5.03
910 916 2.915659 TGACCCGGTTCAGCGAGT 60.916 61.111 0.00 0.00 0.00 4.18
911 917 2.126031 GACCCGGTTCAGCGAGTC 60.126 66.667 0.00 0.00 0.00 3.36
912 918 3.644399 GACCCGGTTCAGCGAGTCC 62.644 68.421 0.00 0.00 0.00 3.85
913 919 3.691342 CCCGGTTCAGCGAGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
914 920 2.125912 CCGGTTCAGCGAGTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
915 921 2.651361 CGGTTCAGCGAGTCCAGT 59.349 61.111 0.00 0.00 0.00 4.00
916 922 1.734477 CGGTTCAGCGAGTCCAGTG 60.734 63.158 0.00 0.00 0.00 3.66
917 923 1.666011 GGTTCAGCGAGTCCAGTGA 59.334 57.895 0.00 0.00 0.00 3.41
918 924 0.667792 GGTTCAGCGAGTCCAGTGAC 60.668 60.000 0.00 0.00 42.09 3.67
919 925 0.667792 GTTCAGCGAGTCCAGTGACC 60.668 60.000 0.00 0.00 42.81 4.02
920 926 2.126307 CAGCGAGTCCAGTGACCG 60.126 66.667 0.00 0.00 42.81 4.79
921 927 2.597805 AGCGAGTCCAGTGACCGT 60.598 61.111 0.00 0.00 42.81 4.83
922 928 1.303074 AGCGAGTCCAGTGACCGTA 60.303 57.895 0.00 0.00 42.81 4.02
923 929 0.892358 AGCGAGTCCAGTGACCGTAA 60.892 55.000 0.00 0.00 42.81 3.18
924 930 0.731855 GCGAGTCCAGTGACCGTAAC 60.732 60.000 0.00 0.00 42.81 2.50
925 931 0.594602 CGAGTCCAGTGACCGTAACA 59.405 55.000 0.00 0.00 42.81 2.41
926 932 1.201647 CGAGTCCAGTGACCGTAACAT 59.798 52.381 0.00 0.00 42.81 2.71
927 933 2.731341 CGAGTCCAGTGACCGTAACATC 60.731 54.545 0.00 0.00 42.81 3.06
928 934 2.230508 GAGTCCAGTGACCGTAACATCA 59.769 50.000 0.00 0.00 42.81 3.07
929 935 2.832129 AGTCCAGTGACCGTAACATCAT 59.168 45.455 0.00 0.00 42.81 2.45
930 936 2.930040 GTCCAGTGACCGTAACATCATG 59.070 50.000 0.00 0.00 35.34 3.07
931 937 2.565391 TCCAGTGACCGTAACATCATGT 59.435 45.455 0.00 0.00 0.00 3.21
932 938 3.007506 TCCAGTGACCGTAACATCATGTT 59.992 43.478 8.41 8.41 43.88 2.71
933 939 3.751175 CCAGTGACCGTAACATCATGTTT 59.249 43.478 8.69 0.00 41.45 2.83
934 940 4.142902 CCAGTGACCGTAACATCATGTTTC 60.143 45.833 8.69 2.34 41.45 2.78
935 941 3.678072 AGTGACCGTAACATCATGTTTCG 59.322 43.478 19.48 19.48 46.10 3.46
936 942 3.430895 GTGACCGTAACATCATGTTTCGT 59.569 43.478 23.04 13.87 45.43 3.85
937 943 3.430556 TGACCGTAACATCATGTTTCGTG 59.569 43.478 23.04 17.62 45.43 4.35
938 944 3.655486 ACCGTAACATCATGTTTCGTGA 58.345 40.909 23.04 0.00 45.43 4.35
939 945 4.059511 ACCGTAACATCATGTTTCGTGAA 58.940 39.130 23.04 0.00 45.43 3.18
940 946 4.693566 ACCGTAACATCATGTTTCGTGAAT 59.306 37.500 23.04 7.59 45.43 2.57
941 947 5.870433 ACCGTAACATCATGTTTCGTGAATA 59.130 36.000 23.04 0.00 45.43 1.75
942 948 6.182634 CCGTAACATCATGTTTCGTGAATAC 58.817 40.000 23.04 7.14 45.43 1.89
943 949 6.183360 CCGTAACATCATGTTTCGTGAATACA 60.183 38.462 23.04 0.00 45.43 2.29
944 950 6.894517 CGTAACATCATGTTTCGTGAATACAG 59.105 38.462 18.49 0.00 43.12 2.74
945 951 6.801539 AACATCATGTTTCGTGAATACAGT 57.198 33.333 0.00 0.00 37.26 3.55
946 952 6.169419 ACATCATGTTTCGTGAATACAGTG 57.831 37.500 0.00 0.00 32.88 3.66
947 953 5.931724 ACATCATGTTTCGTGAATACAGTGA 59.068 36.000 0.00 0.00 32.88 3.41
948 954 5.839262 TCATGTTTCGTGAATACAGTGAC 57.161 39.130 0.00 0.00 0.00 3.67
949 955 4.688879 TCATGTTTCGTGAATACAGTGACC 59.311 41.667 0.00 0.00 0.00 4.02
950 956 4.061357 TGTTTCGTGAATACAGTGACCA 57.939 40.909 0.00 0.00 0.00 4.02
951 957 4.443621 TGTTTCGTGAATACAGTGACCAA 58.556 39.130 0.00 0.00 0.00 3.67
952 958 4.876679 TGTTTCGTGAATACAGTGACCAAA 59.123 37.500 0.00 0.00 0.00 3.28
953 959 5.202640 GTTTCGTGAATACAGTGACCAAAC 58.797 41.667 0.00 0.00 0.00 2.93
954 960 4.330944 TCGTGAATACAGTGACCAAACT 57.669 40.909 0.00 0.00 0.00 2.66
963 969 3.771577 AGTGACCAAACTGAACCCTAG 57.228 47.619 0.00 0.00 0.00 3.02
964 970 3.314693 AGTGACCAAACTGAACCCTAGA 58.685 45.455 0.00 0.00 0.00 2.43
965 971 3.325135 AGTGACCAAACTGAACCCTAGAG 59.675 47.826 0.00 0.00 0.00 2.43
966 972 2.038557 TGACCAAACTGAACCCTAGAGC 59.961 50.000 0.00 0.00 0.00 4.09
967 973 1.351350 ACCAAACTGAACCCTAGAGCC 59.649 52.381 0.00 0.00 0.00 4.70
968 974 1.351017 CCAAACTGAACCCTAGAGCCA 59.649 52.381 0.00 0.00 0.00 4.75
969 975 2.224769 CCAAACTGAACCCTAGAGCCAA 60.225 50.000 0.00 0.00 0.00 4.52
970 976 3.077359 CAAACTGAACCCTAGAGCCAAG 58.923 50.000 0.00 0.00 0.00 3.61
971 977 2.031495 ACTGAACCCTAGAGCCAAGT 57.969 50.000 0.00 0.00 0.00 3.16
972 978 2.339769 ACTGAACCCTAGAGCCAAGTT 58.660 47.619 0.00 0.00 0.00 2.66
973 979 2.711547 ACTGAACCCTAGAGCCAAGTTT 59.288 45.455 0.00 0.00 0.00 2.66
974 980 3.908103 ACTGAACCCTAGAGCCAAGTTTA 59.092 43.478 0.00 0.00 0.00 2.01
975 981 4.020128 ACTGAACCCTAGAGCCAAGTTTAG 60.020 45.833 0.00 0.00 32.19 1.85
976 982 3.908103 TGAACCCTAGAGCCAAGTTTAGT 59.092 43.478 0.00 0.00 0.00 2.24
977 983 4.349930 TGAACCCTAGAGCCAAGTTTAGTT 59.650 41.667 0.00 0.00 0.00 2.24
978 984 5.544948 TGAACCCTAGAGCCAAGTTTAGTTA 59.455 40.000 0.00 0.00 0.00 2.24
979 985 5.417754 ACCCTAGAGCCAAGTTTAGTTAC 57.582 43.478 0.00 0.00 0.00 2.50
980 986 5.092259 ACCCTAGAGCCAAGTTTAGTTACT 58.908 41.667 0.00 0.00 0.00 2.24
981 987 5.046520 ACCCTAGAGCCAAGTTTAGTTACTG 60.047 44.000 0.00 0.00 0.00 2.74
982 988 5.046520 CCCTAGAGCCAAGTTTAGTTACTGT 60.047 44.000 0.00 0.00 0.00 3.55
983 989 6.154021 CCCTAGAGCCAAGTTTAGTTACTGTA 59.846 42.308 0.00 0.00 0.00 2.74
984 990 7.259161 CCTAGAGCCAAGTTTAGTTACTGTAG 58.741 42.308 0.00 0.00 0.00 2.74
985 991 6.912951 AGAGCCAAGTTTAGTTACTGTAGA 57.087 37.500 0.00 0.00 0.00 2.59
986 992 7.483580 AGAGCCAAGTTTAGTTACTGTAGAT 57.516 36.000 0.00 0.00 0.00 1.98
987 993 7.324178 AGAGCCAAGTTTAGTTACTGTAGATG 58.676 38.462 0.00 0.00 0.00 2.90
988 994 7.005709 AGCCAAGTTTAGTTACTGTAGATGT 57.994 36.000 0.00 0.00 0.00 3.06
989 995 8.130671 AGCCAAGTTTAGTTACTGTAGATGTA 57.869 34.615 0.00 0.00 0.00 2.29
990 996 8.591072 AGCCAAGTTTAGTTACTGTAGATGTAA 58.409 33.333 0.00 0.00 0.00 2.41
991 997 9.379791 GCCAAGTTTAGTTACTGTAGATGTAAT 57.620 33.333 0.00 0.00 33.29 1.89
1022 1028 0.031857 CTCCAGATACGCCTGAGCAG 59.968 60.000 0.00 0.00 39.83 4.24
1306 1312 0.105964 CGAGTTCCCCATCGCCATTA 59.894 55.000 0.00 0.00 31.42 1.90
1308 1314 2.810400 CGAGTTCCCCATCGCCATTAAT 60.810 50.000 0.00 0.00 31.42 1.40
1377 1384 4.155462 TGCCTTCACTACTTCACGTACTAG 59.845 45.833 0.00 0.00 0.00 2.57
1378 1385 4.155644 GCCTTCACTACTTCACGTACTAGT 59.844 45.833 0.00 0.00 0.00 2.57
1379 1386 5.352569 GCCTTCACTACTTCACGTACTAGTA 59.647 44.000 0.00 0.00 0.00 1.82
1380 1387 6.038050 GCCTTCACTACTTCACGTACTAGTAT 59.962 42.308 5.75 0.00 0.00 2.12
1381 1388 7.225538 GCCTTCACTACTTCACGTACTAGTATA 59.774 40.741 5.75 0.00 0.00 1.47
1382 1389 9.270640 CCTTCACTACTTCACGTACTAGTATAT 57.729 37.037 5.75 0.00 0.00 0.86
1388 1395 7.982371 ACTTCACGTACTAGTATATTTGTGC 57.018 36.000 5.75 0.00 0.00 4.57
1389 1396 6.690098 ACTTCACGTACTAGTATATTTGTGCG 59.310 38.462 15.46 15.46 42.42 5.34
1390 1397 5.513376 TCACGTACTAGTATATTTGTGCGG 58.487 41.667 19.31 11.33 41.40 5.69
1391 1398 5.066375 TCACGTACTAGTATATTTGTGCGGT 59.934 40.000 19.31 7.16 41.40 5.68
1392 1399 5.172591 CACGTACTAGTATATTTGTGCGGTG 59.827 44.000 19.31 13.03 41.40 4.94
1393 1400 4.678287 CGTACTAGTATATTTGTGCGGTGG 59.322 45.833 5.75 0.00 35.53 4.61
1394 1401 4.067972 ACTAGTATATTTGTGCGGTGGG 57.932 45.455 0.00 0.00 0.00 4.61
1395 1402 3.453353 ACTAGTATATTTGTGCGGTGGGT 59.547 43.478 0.00 0.00 0.00 4.51
1396 1403 2.639065 AGTATATTTGTGCGGTGGGTG 58.361 47.619 0.00 0.00 0.00 4.61
1397 1404 2.237643 AGTATATTTGTGCGGTGGGTGA 59.762 45.455 0.00 0.00 0.00 4.02
1398 1405 2.435372 ATATTTGTGCGGTGGGTGAT 57.565 45.000 0.00 0.00 0.00 3.06
1399 1406 3.569194 ATATTTGTGCGGTGGGTGATA 57.431 42.857 0.00 0.00 0.00 2.15
1400 1407 2.208132 ATTTGTGCGGTGGGTGATAA 57.792 45.000 0.00 0.00 0.00 1.75
1401 1408 1.982660 TTTGTGCGGTGGGTGATAAA 58.017 45.000 0.00 0.00 0.00 1.40
1402 1409 1.529226 TTGTGCGGTGGGTGATAAAG 58.471 50.000 0.00 0.00 0.00 1.85
1403 1410 0.687920 TGTGCGGTGGGTGATAAAGA 59.312 50.000 0.00 0.00 0.00 2.52
1504 1512 6.488683 TCCTTGTTCGGAATAAATGTCAAGTT 59.511 34.615 11.58 0.00 32.13 2.66
1689 1697 5.047847 CGACATATGTAACCGGAGTCAATT 58.952 41.667 9.46 0.00 0.00 2.32
1691 1699 6.698329 CGACATATGTAACCGGAGTCAATTTA 59.302 38.462 9.46 0.00 0.00 1.40
1692 1700 7.306399 CGACATATGTAACCGGAGTCAATTTAC 60.306 40.741 9.46 5.08 0.00 2.01
1724 1733 3.444703 TGTGGTACATTTGTTTGCCAC 57.555 42.857 17.36 17.36 44.52 5.01
1757 1766 7.450124 TGTAGGTTGTTTTGTTTAAGTGTCA 57.550 32.000 0.00 0.00 0.00 3.58
1817 1826 6.844696 TTGAATGGAAGCAGTAATCGTATC 57.155 37.500 0.00 0.00 0.00 2.24
1840 1849 3.086282 TGTTCTGCTACACTATCGGTCA 58.914 45.455 0.00 0.00 0.00 4.02
2105 2125 8.701908 ATACATTTCACAATCATCTAGGCATT 57.298 30.769 0.00 0.00 0.00 3.56
2107 2127 7.262772 ACATTTCACAATCATCTAGGCATTTG 58.737 34.615 0.00 0.00 0.00 2.32
2140 2160 6.586463 CGTATGTCCCTAAACTAGCATGTATG 59.414 42.308 0.00 0.00 0.00 2.39
2268 2288 8.250332 TGACTTTCTTTAACTTTGTGCAGATTT 58.750 29.630 0.00 0.00 0.00 2.17
2400 2422 6.644181 TCGTAGTATATCGAGTGACTTACTGG 59.356 42.308 4.59 0.00 40.53 4.00
2492 2514 6.159988 GCTATGTGACATCTAAGTATCCACC 58.840 44.000 0.00 0.00 0.00 4.61
2617 2639 3.193267 TGCTTGTGTTTCAGCTTGTTTCT 59.807 39.130 0.00 0.00 0.00 2.52
2623 2645 7.575332 TGTGTTTCAGCTTGTTTCTTTTTAC 57.425 32.000 0.00 0.00 0.00 2.01
2640 2743 7.632721 TCTTTTTACCTTTGCTAGTTGTTACG 58.367 34.615 0.00 0.00 0.00 3.18
2658 2761 3.543680 ACGGTTAGCATCAATAGCTGT 57.456 42.857 0.00 0.00 43.33 4.40
2715 2818 9.444600 TCTGTACCTTTCATTTGATAGTAAACC 57.555 33.333 0.00 0.00 0.00 3.27
2807 2910 4.092968 GCTATGTTGTTCGACTAGTTTGGG 59.907 45.833 0.00 0.00 0.00 4.12
3238 3342 1.064017 CCCCCTATGCTAAGCAAACCA 60.064 52.381 0.00 0.00 43.62 3.67
3279 3383 3.004839 CACTATCCACCAGGTGATACTCG 59.995 52.174 22.37 2.86 35.23 4.18
3314 3418 2.158667 ACACCTCAAGGATTTGACCGTT 60.159 45.455 2.30 0.00 38.37 4.44
3316 3420 2.372172 ACCTCAAGGATTTGACCGTTCT 59.628 45.455 2.30 0.00 38.37 3.01
3492 3596 3.902218 TGAATCAGCCTTTAATCCCCAG 58.098 45.455 0.00 0.00 0.00 4.45
4167 4271 6.853041 GCATTTCTATTTGCCATCCTTTTGGA 60.853 38.462 0.00 0.00 42.00 3.53
4211 4319 6.016610 TGCTTTTGTTATGAACCAGAACTACC 60.017 38.462 6.12 0.00 36.65 3.18
4399 4512 5.761165 AAAGTAGAGAAGAGAGTATCGCC 57.239 43.478 0.00 0.00 42.67 5.54
4407 4530 2.298610 AGAGAGTATCGCCGATGTTCA 58.701 47.619 10.41 0.00 42.67 3.18
4484 4607 4.003648 ACAGAAAAGAATAGTGGCCGAAG 58.996 43.478 0.00 0.00 0.00 3.79
4517 4640 7.930217 TCTCAAAAAGGTTTCTGTAATGAGTG 58.070 34.615 0.00 0.00 34.77 3.51
4534 4657 3.011821 TGAGTGTATCCCTCTGAGGTTCT 59.988 47.826 21.70 8.73 31.93 3.01
4535 4658 4.229812 TGAGTGTATCCCTCTGAGGTTCTA 59.770 45.833 21.70 7.80 31.93 2.10
4536 4659 5.103473 TGAGTGTATCCCTCTGAGGTTCTAT 60.103 44.000 21.70 11.84 31.93 1.98
4680 4804 4.389992 CAGAAGTGAAAGCGCTAAATCTCA 59.610 41.667 12.05 6.15 33.70 3.27
4711 4847 0.822164 ACGGTAGCACAGGGTCATAC 59.178 55.000 0.00 0.00 0.00 2.39
4735 4871 5.050634 CGTGTGAAGTCTCGGAAAACATAAA 60.051 40.000 0.00 0.00 0.00 1.40
4736 4872 6.363473 GTGTGAAGTCTCGGAAAACATAAAG 58.637 40.000 0.00 0.00 0.00 1.85
4737 4873 5.468746 TGTGAAGTCTCGGAAAACATAAAGG 59.531 40.000 0.00 0.00 0.00 3.11
4738 4874 5.001232 TGAAGTCTCGGAAAACATAAAGGG 58.999 41.667 0.00 0.00 0.00 3.95
4739 4875 3.951663 AGTCTCGGAAAACATAAAGGGG 58.048 45.455 0.00 0.00 0.00 4.79
4740 4876 2.422479 GTCTCGGAAAACATAAAGGGGC 59.578 50.000 0.00 0.00 0.00 5.80
4741 4877 1.749063 CTCGGAAAACATAAAGGGGCC 59.251 52.381 0.00 0.00 0.00 5.80
4742 4878 1.075698 TCGGAAAACATAAAGGGGCCA 59.924 47.619 4.39 0.00 0.00 5.36
4743 4879 1.476488 CGGAAAACATAAAGGGGCCAG 59.524 52.381 4.39 0.00 0.00 4.85
4744 4880 1.831106 GGAAAACATAAAGGGGCCAGG 59.169 52.381 4.39 0.00 0.00 4.45
4745 4881 1.207089 GAAAACATAAAGGGGCCAGGC 59.793 52.381 4.39 1.26 0.00 4.85
4746 4882 0.116143 AAACATAAAGGGGCCAGGCA 59.884 50.000 15.19 0.00 0.00 4.75
4747 4883 0.324645 AACATAAAGGGGCCAGGCAG 60.325 55.000 15.19 0.00 0.00 4.85
4748 4884 1.214305 ACATAAAGGGGCCAGGCAGA 61.214 55.000 15.19 0.00 0.00 4.26
4749 4885 0.033208 CATAAAGGGGCCAGGCAGAA 60.033 55.000 15.19 0.00 0.00 3.02
4750 4886 0.709992 ATAAAGGGGCCAGGCAGAAA 59.290 50.000 15.19 0.00 0.00 2.52
4751 4887 0.485099 TAAAGGGGCCAGGCAGAAAA 59.515 50.000 15.19 0.00 0.00 2.29
4752 4888 0.833409 AAAGGGGCCAGGCAGAAAAG 60.833 55.000 15.19 0.00 0.00 2.27
4753 4889 2.023760 AAGGGGCCAGGCAGAAAAGT 62.024 55.000 15.19 0.00 0.00 2.66
4754 4890 1.140134 AGGGGCCAGGCAGAAAAGTA 61.140 55.000 15.19 0.00 0.00 2.24
4755 4891 0.965866 GGGGCCAGGCAGAAAAGTAC 60.966 60.000 15.19 0.00 0.00 2.73
4756 4892 0.251165 GGGCCAGGCAGAAAAGTACA 60.251 55.000 15.19 0.00 0.00 2.90
4757 4893 1.168714 GGCCAGGCAGAAAAGTACAG 58.831 55.000 15.19 0.00 0.00 2.74
4758 4894 0.523519 GCCAGGCAGAAAAGTACAGC 59.476 55.000 6.55 0.00 0.00 4.40
4759 4895 0.798776 CCAGGCAGAAAAGTACAGCG 59.201 55.000 0.00 0.00 0.00 5.18
4760 4896 0.798776 CAGGCAGAAAAGTACAGCGG 59.201 55.000 0.00 0.00 0.00 5.52
4761 4897 0.396811 AGGCAGAAAAGTACAGCGGT 59.603 50.000 0.00 0.00 0.00 5.68
4762 4898 0.517316 GGCAGAAAAGTACAGCGGTG 59.483 55.000 14.13 14.13 0.00 4.94
4763 4899 1.508632 GCAGAAAAGTACAGCGGTGA 58.491 50.000 23.44 1.77 0.00 4.02
4764 4900 2.076863 GCAGAAAAGTACAGCGGTGAT 58.923 47.619 23.44 8.26 0.00 3.06
4765 4901 3.259064 GCAGAAAAGTACAGCGGTGATA 58.741 45.455 23.44 7.20 0.00 2.15
4766 4902 3.307242 GCAGAAAAGTACAGCGGTGATAG 59.693 47.826 23.44 0.00 0.00 2.08
4767 4903 3.307242 CAGAAAAGTACAGCGGTGATAGC 59.693 47.826 23.44 7.89 0.00 2.97
4768 4904 1.922570 AAAGTACAGCGGTGATAGCG 58.077 50.000 23.44 0.00 42.73 4.26
4778 4914 3.013276 CGGTGATAGCGCTAAATCTCA 57.987 47.619 22.98 17.36 30.39 3.27
4779 4915 3.381045 CGGTGATAGCGCTAAATCTCAA 58.619 45.455 22.98 0.00 30.39 3.02
4780 4916 3.802139 CGGTGATAGCGCTAAATCTCAAA 59.198 43.478 22.98 0.00 30.39 2.69
4781 4917 4.270084 CGGTGATAGCGCTAAATCTCAAAA 59.730 41.667 22.98 0.00 30.39 2.44
4782 4918 5.557136 CGGTGATAGCGCTAAATCTCAAAAG 60.557 44.000 22.98 10.72 30.39 2.27
4783 4919 5.201181 GTGATAGCGCTAAATCTCAAAAGC 58.799 41.667 22.98 4.93 0.00 3.51
4784 4920 4.273480 TGATAGCGCTAAATCTCAAAAGCC 59.727 41.667 22.98 0.00 0.00 4.35
4785 4921 1.745653 AGCGCTAAATCTCAAAAGCCC 59.254 47.619 8.99 0.00 0.00 5.19
4786 4922 1.472480 GCGCTAAATCTCAAAAGCCCA 59.528 47.619 0.00 0.00 0.00 5.36
4787 4923 2.094752 GCGCTAAATCTCAAAAGCCCAA 60.095 45.455 0.00 0.00 0.00 4.12
4788 4924 3.613910 GCGCTAAATCTCAAAAGCCCAAA 60.614 43.478 0.00 0.00 0.00 3.28
4789 4925 3.920412 CGCTAAATCTCAAAAGCCCAAAC 59.080 43.478 0.00 0.00 0.00 2.93
4790 4926 4.558496 CGCTAAATCTCAAAAGCCCAAACA 60.558 41.667 0.00 0.00 0.00 2.83
4791 4927 4.686091 GCTAAATCTCAAAAGCCCAAACAC 59.314 41.667 0.00 0.00 0.00 3.32
4792 4928 3.369546 AATCTCAAAAGCCCAAACACG 57.630 42.857 0.00 0.00 0.00 4.49
4793 4929 1.028905 TCTCAAAAGCCCAAACACGG 58.971 50.000 0.00 0.00 0.00 4.94
4794 4930 0.744281 CTCAAAAGCCCAAACACGGT 59.256 50.000 0.00 0.00 0.00 4.83
4795 4931 1.950909 CTCAAAAGCCCAAACACGGTA 59.049 47.619 0.00 0.00 0.00 4.02
4796 4932 1.950909 TCAAAAGCCCAAACACGGTAG 59.049 47.619 0.00 0.00 0.00 3.18
4797 4933 0.671796 AAAAGCCCAAACACGGTAGC 59.328 50.000 0.00 0.00 0.00 3.58
4798 4934 0.466555 AAAGCCCAAACACGGTAGCA 60.467 50.000 0.00 0.00 0.00 3.49
4799 4935 1.170290 AAGCCCAAACACGGTAGCAC 61.170 55.000 0.00 0.00 0.00 4.40
4800 4936 1.894756 GCCCAAACACGGTAGCACA 60.895 57.895 0.00 0.00 0.00 4.57
4801 4937 1.852067 GCCCAAACACGGTAGCACAG 61.852 60.000 0.00 0.00 0.00 3.66
4802 4938 1.234615 CCCAAACACGGTAGCACAGG 61.235 60.000 0.00 0.00 0.00 4.00
4803 4939 1.234615 CCAAACACGGTAGCACAGGG 61.235 60.000 0.00 0.00 0.00 4.45
4804 4940 0.534203 CAAACACGGTAGCACAGGGT 60.534 55.000 0.00 0.00 29.09 4.34
4805 4941 0.250166 AAACACGGTAGCACAGGGTC 60.250 55.000 0.00 0.00 25.58 4.46
4806 4942 1.404479 AACACGGTAGCACAGGGTCA 61.404 55.000 0.00 0.00 25.58 4.02
4807 4943 1.192146 ACACGGTAGCACAGGGTCAT 61.192 55.000 0.00 0.00 0.00 3.06
4808 4944 0.821517 CACGGTAGCACAGGGTCATA 59.178 55.000 0.00 0.00 0.00 2.15
4809 4945 0.822164 ACGGTAGCACAGGGTCATAC 59.178 55.000 0.00 0.00 0.00 2.39
4810 4946 0.248907 CGGTAGCACAGGGTCATACG 60.249 60.000 0.00 0.00 0.00 3.06
4811 4947 0.822164 GGTAGCACAGGGTCATACGT 59.178 55.000 0.00 0.00 0.00 3.57
4812 4948 1.470979 GGTAGCACAGGGTCATACGTG 60.471 57.143 0.00 0.00 0.00 4.49
4813 4949 1.203994 GTAGCACAGGGTCATACGTGT 59.796 52.381 0.00 0.00 39.78 4.49
4817 4953 2.743636 ACAGGGTCATACGTGTGAAG 57.256 50.000 17.08 9.65 37.98 3.02
4818 4954 1.968493 ACAGGGTCATACGTGTGAAGT 59.032 47.619 17.08 10.25 37.98 3.01
4819 4955 2.029290 ACAGGGTCATACGTGTGAAGTC 60.029 50.000 17.08 9.36 37.98 3.01
4820 4956 2.231478 CAGGGTCATACGTGTGAAGTCT 59.769 50.000 17.08 11.23 0.00 3.24
4821 4957 2.492484 AGGGTCATACGTGTGAAGTCTC 59.508 50.000 17.08 4.89 0.00 3.36
4822 4958 2.516923 GGTCATACGTGTGAAGTCTCG 58.483 52.381 17.08 0.00 0.00 4.04
4823 4959 2.516923 GTCATACGTGTGAAGTCTCGG 58.483 52.381 17.08 0.00 0.00 4.63
4824 4960 2.161012 GTCATACGTGTGAAGTCTCGGA 59.839 50.000 17.08 0.00 0.00 4.55
4825 4961 2.815503 TCATACGTGTGAAGTCTCGGAA 59.184 45.455 13.02 0.00 0.00 4.30
4826 4962 3.253921 TCATACGTGTGAAGTCTCGGAAA 59.746 43.478 13.02 0.00 0.00 3.13
4827 4963 2.589798 ACGTGTGAAGTCTCGGAAAA 57.410 45.000 0.00 0.00 0.00 2.29
4828 4964 2.199236 ACGTGTGAAGTCTCGGAAAAC 58.801 47.619 0.00 0.00 0.00 2.43
4829 4965 2.198406 CGTGTGAAGTCTCGGAAAACA 58.802 47.619 0.00 0.00 0.00 2.83
4830 4966 2.800544 CGTGTGAAGTCTCGGAAAACAT 59.199 45.455 0.00 0.00 0.00 2.71
4831 4967 3.985279 CGTGTGAAGTCTCGGAAAACATA 59.015 43.478 0.00 0.00 0.00 2.29
4832 4968 4.446385 CGTGTGAAGTCTCGGAAAACATAA 59.554 41.667 0.00 0.00 0.00 1.90
4873 5009 1.750778 CAGGGGTGATAGCGCAAAATT 59.249 47.619 11.47 0.00 0.00 1.82
4875 5011 2.166254 AGGGGTGATAGCGCAAAATTTG 59.834 45.455 11.47 0.57 0.00 2.32
4878 5014 3.612423 GGGTGATAGCGCAAAATTTGAAC 59.388 43.478 11.47 0.09 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 1.003580 CTGGCTTGGTGTGATGGTACT 59.996 52.381 0.00 0.00 0.00 2.73
442 448 3.692367 CCTCTATTTCGCGCGCCG 61.692 66.667 27.95 20.60 38.61 6.46
453 459 1.123928 CCGCCTGGTTCTTCCTCTAT 58.876 55.000 0.00 0.00 37.07 1.98
693 699 2.733593 GAGCTCGTCACGCGGTTT 60.734 61.111 12.47 0.00 41.72 3.27
783 789 1.715019 TATTCCCCCTGCCCATTCGG 61.715 60.000 0.00 0.00 0.00 4.30
784 790 0.405585 ATATTCCCCCTGCCCATTCG 59.594 55.000 0.00 0.00 0.00 3.34
785 791 1.928868 CATATTCCCCCTGCCCATTC 58.071 55.000 0.00 0.00 0.00 2.67
786 792 0.178924 GCATATTCCCCCTGCCCATT 60.179 55.000 0.00 0.00 0.00 3.16
787 793 1.370651 TGCATATTCCCCCTGCCCAT 61.371 55.000 0.00 0.00 35.02 4.00
788 794 1.588460 TTGCATATTCCCCCTGCCCA 61.588 55.000 0.00 0.00 35.02 5.36
789 795 0.398381 TTTGCATATTCCCCCTGCCC 60.398 55.000 0.00 0.00 35.02 5.36
790 796 1.138859 GTTTTGCATATTCCCCCTGCC 59.861 52.381 0.00 0.00 35.02 4.85
791 797 2.110578 AGTTTTGCATATTCCCCCTGC 58.889 47.619 0.00 0.00 36.45 4.85
792 798 3.806625 CAGTTTTGCATATTCCCCCTG 57.193 47.619 0.00 0.00 0.00 4.45
805 811 2.772568 TTGACCATCGTGCAGTTTTG 57.227 45.000 0.00 0.00 0.00 2.44
806 812 2.223711 GGTTTGACCATCGTGCAGTTTT 60.224 45.455 0.00 0.00 38.42 2.43
807 813 1.336755 GGTTTGACCATCGTGCAGTTT 59.663 47.619 0.00 0.00 38.42 2.66
808 814 0.951558 GGTTTGACCATCGTGCAGTT 59.048 50.000 0.00 0.00 38.42 3.16
809 815 1.227999 CGGTTTGACCATCGTGCAGT 61.228 55.000 0.00 0.00 38.47 4.40
810 816 1.227999 ACGGTTTGACCATCGTGCAG 61.228 55.000 0.00 0.00 38.47 4.41
811 817 0.816018 AACGGTTTGACCATCGTGCA 60.816 50.000 0.00 0.00 38.47 4.57
812 818 0.309612 AAACGGTTTGACCATCGTGC 59.690 50.000 5.12 0.00 38.47 5.34
813 819 2.766970 AAAACGGTTTGACCATCGTG 57.233 45.000 6.92 0.00 38.47 4.35
814 820 2.223618 CCAAAAACGGTTTGACCATCGT 60.224 45.455 6.92 0.00 38.47 3.73
815 821 2.389998 CCAAAAACGGTTTGACCATCG 58.610 47.619 6.92 0.00 38.47 3.84
816 822 2.101750 ACCCAAAAACGGTTTGACCATC 59.898 45.455 6.92 0.00 38.47 3.51
817 823 2.101750 GACCCAAAAACGGTTTGACCAT 59.898 45.455 6.92 0.00 38.47 3.55
818 824 1.477295 GACCCAAAAACGGTTTGACCA 59.523 47.619 6.92 0.00 38.47 4.02
819 825 1.477295 TGACCCAAAAACGGTTTGACC 59.523 47.619 6.92 4.97 32.27 4.02
820 826 2.943449 TGACCCAAAAACGGTTTGAC 57.057 45.000 6.92 0.00 32.27 3.18
821 827 3.955650 TTTGACCCAAAAACGGTTTGA 57.044 38.095 6.92 0.00 32.27 2.69
822 828 4.207429 CGTATTTGACCCAAAAACGGTTTG 59.793 41.667 6.92 2.83 36.90 2.93
823 829 4.142204 ACGTATTTGACCCAAAAACGGTTT 60.142 37.500 0.00 0.00 36.90 3.27
824 830 3.380954 ACGTATTTGACCCAAAAACGGTT 59.619 39.130 0.00 0.00 36.90 4.44
825 831 2.950975 ACGTATTTGACCCAAAAACGGT 59.049 40.909 0.00 0.00 36.90 4.83
826 832 3.629438 ACGTATTTGACCCAAAAACGG 57.371 42.857 0.00 0.00 36.90 4.44
827 833 4.905295 GTGTACGTATTTGACCCAAAAACG 59.095 41.667 0.00 0.00 36.90 3.60
828 834 4.905295 CGTGTACGTATTTGACCCAAAAAC 59.095 41.667 0.00 0.00 34.26 2.43
829 835 5.093169 CGTGTACGTATTTGACCCAAAAA 57.907 39.130 0.00 0.00 34.26 1.94
830 836 4.728917 CGTGTACGTATTTGACCCAAAA 57.271 40.909 0.00 0.00 34.26 2.44
844 850 4.487630 GCTCGTATTTTACACACGTGTACG 60.488 45.833 24.47 24.47 44.81 3.67
845 851 4.201523 GGCTCGTATTTTACACACGTGTAC 60.202 45.833 22.90 13.01 44.81 2.90
846 852 3.919804 GGCTCGTATTTTACACACGTGTA 59.080 43.478 22.90 5.59 44.42 2.90
847 853 2.733026 GGCTCGTATTTTACACACGTGT 59.267 45.455 17.22 17.22 46.87 4.49
848 854 2.222420 CGGCTCGTATTTTACACACGTG 60.222 50.000 15.48 15.48 37.02 4.49
849 855 1.987770 CGGCTCGTATTTTACACACGT 59.012 47.619 0.00 0.00 37.02 4.49
850 856 2.252747 TCGGCTCGTATTTTACACACG 58.747 47.619 0.00 0.00 37.03 4.49
851 857 4.388790 GTTTCGGCTCGTATTTTACACAC 58.611 43.478 0.00 0.00 0.00 3.82
852 858 3.121611 CGTTTCGGCTCGTATTTTACACA 59.878 43.478 0.00 0.00 0.00 3.72
853 859 3.482436 CCGTTTCGGCTCGTATTTTACAC 60.482 47.826 0.00 0.00 41.17 2.90
854 860 2.667481 CCGTTTCGGCTCGTATTTTACA 59.333 45.455 0.00 0.00 41.17 2.41
855 861 3.294088 CCGTTTCGGCTCGTATTTTAC 57.706 47.619 0.00 0.00 41.17 2.01
876 882 1.393539 GTCAGCGTACGGTAACTCGTA 59.606 52.381 20.88 0.00 43.59 3.43
877 883 0.166814 GTCAGCGTACGGTAACTCGT 59.833 55.000 20.88 0.00 45.88 4.18
878 884 0.522076 GGTCAGCGTACGGTAACTCG 60.522 60.000 20.88 7.54 0.00 4.18
879 885 0.179153 GGGTCAGCGTACGGTAACTC 60.179 60.000 20.88 12.95 0.00 3.01
880 886 1.885871 GGGTCAGCGTACGGTAACT 59.114 57.895 20.88 3.19 0.00 2.24
881 887 1.514873 CGGGTCAGCGTACGGTAAC 60.515 63.158 20.88 16.47 0.00 2.50
882 888 2.699768 CCGGGTCAGCGTACGGTAA 61.700 63.158 20.88 1.84 41.34 2.85
883 889 3.133464 CCGGGTCAGCGTACGGTA 61.133 66.667 20.88 6.11 41.34 4.02
886 892 2.505557 GAACCGGGTCAGCGTACG 60.506 66.667 16.61 11.84 0.00 3.67
887 893 1.445582 CTGAACCGGGTCAGCGTAC 60.446 63.158 35.31 0.00 38.74 3.67
888 894 2.967397 CTGAACCGGGTCAGCGTA 59.033 61.111 35.31 6.41 38.74 4.42
892 898 2.125912 CTCGCTGAACCGGGTCAG 60.126 66.667 39.78 39.78 46.58 3.51
893 899 2.915659 ACTCGCTGAACCGGGTCA 60.916 61.111 23.52 23.52 37.34 4.02
895 901 3.692406 GGACTCGCTGAACCGGGT 61.692 66.667 6.32 0.00 46.09 5.28
896 902 3.649277 CTGGACTCGCTGAACCGGG 62.649 68.421 6.32 0.00 34.17 5.73
897 903 2.125912 CTGGACTCGCTGAACCGG 60.126 66.667 0.00 0.00 0.00 5.28
898 904 1.734477 CACTGGACTCGCTGAACCG 60.734 63.158 0.00 0.00 0.00 4.44
899 905 0.667792 GTCACTGGACTCGCTGAACC 60.668 60.000 0.00 0.00 40.99 3.62
900 906 0.667792 GGTCACTGGACTCGCTGAAC 60.668 60.000 0.00 0.00 43.77 3.18
901 907 1.666011 GGTCACTGGACTCGCTGAA 59.334 57.895 0.00 0.00 43.77 3.02
902 908 2.626780 CGGTCACTGGACTCGCTGA 61.627 63.158 0.00 0.00 43.77 4.26
903 909 1.583495 TACGGTCACTGGACTCGCTG 61.583 60.000 0.00 0.00 43.77 5.18
904 910 0.892358 TTACGGTCACTGGACTCGCT 60.892 55.000 0.00 0.00 43.77 4.93
905 911 0.731855 GTTACGGTCACTGGACTCGC 60.732 60.000 0.00 0.00 43.77 5.03
906 912 0.594602 TGTTACGGTCACTGGACTCG 59.405 55.000 0.00 0.00 43.77 4.18
907 913 2.230508 TGATGTTACGGTCACTGGACTC 59.769 50.000 0.00 0.00 43.77 3.36
908 914 2.244695 TGATGTTACGGTCACTGGACT 58.755 47.619 0.00 0.00 43.77 3.85
909 915 2.736144 TGATGTTACGGTCACTGGAC 57.264 50.000 0.00 0.00 43.55 4.02
910 916 2.565391 ACATGATGTTACGGTCACTGGA 59.435 45.455 0.00 0.00 0.00 3.86
911 917 2.972625 ACATGATGTTACGGTCACTGG 58.027 47.619 0.00 0.00 0.00 4.00
912 918 4.434198 CGAAACATGATGTTACGGTCACTG 60.434 45.833 11.70 0.00 40.14 3.66
913 919 3.678072 CGAAACATGATGTTACGGTCACT 59.322 43.478 11.70 0.00 40.14 3.41
914 920 3.430895 ACGAAACATGATGTTACGGTCAC 59.569 43.478 11.70 0.00 40.14 3.67
915 921 3.430556 CACGAAACATGATGTTACGGTCA 59.569 43.478 11.70 0.00 40.14 4.02
916 922 3.676172 TCACGAAACATGATGTTACGGTC 59.324 43.478 11.70 4.54 40.14 4.79
917 923 3.655486 TCACGAAACATGATGTTACGGT 58.345 40.909 11.70 7.07 40.14 4.83
918 924 4.655440 TTCACGAAACATGATGTTACGG 57.345 40.909 11.70 6.45 40.14 4.02
919 925 6.757162 TGTATTCACGAAACATGATGTTACG 58.243 36.000 11.70 1.00 40.14 3.18
920 926 7.688167 CACTGTATTCACGAAACATGATGTTAC 59.312 37.037 11.70 4.10 40.14 2.50
921 927 7.600752 TCACTGTATTCACGAAACATGATGTTA 59.399 33.333 11.70 0.00 40.14 2.41
922 928 6.426633 TCACTGTATTCACGAAACATGATGTT 59.573 34.615 4.72 4.72 43.41 2.71
923 929 5.931724 TCACTGTATTCACGAAACATGATGT 59.068 36.000 0.00 0.00 0.00 3.06
924 930 6.243551 GTCACTGTATTCACGAAACATGATG 58.756 40.000 0.00 0.00 0.00 3.07
925 931 5.351465 GGTCACTGTATTCACGAAACATGAT 59.649 40.000 0.00 0.00 0.00 2.45
926 932 4.688879 GGTCACTGTATTCACGAAACATGA 59.311 41.667 0.00 0.00 0.00 3.07
927 933 4.450757 TGGTCACTGTATTCACGAAACATG 59.549 41.667 0.00 0.00 0.00 3.21
928 934 4.637276 TGGTCACTGTATTCACGAAACAT 58.363 39.130 0.00 0.00 0.00 2.71
929 935 4.061357 TGGTCACTGTATTCACGAAACA 57.939 40.909 0.00 0.00 0.00 2.83
930 936 5.007332 AGTTTGGTCACTGTATTCACGAAAC 59.993 40.000 0.00 0.00 37.58 2.78
931 937 5.007234 CAGTTTGGTCACTGTATTCACGAAA 59.993 40.000 0.00 0.00 39.59 3.46
932 938 4.509970 CAGTTTGGTCACTGTATTCACGAA 59.490 41.667 0.00 0.00 39.59 3.85
933 939 4.055360 CAGTTTGGTCACTGTATTCACGA 58.945 43.478 0.00 0.00 39.59 4.35
934 940 4.055360 TCAGTTTGGTCACTGTATTCACG 58.945 43.478 0.97 0.00 44.10 4.35
935 941 5.277828 GGTTCAGTTTGGTCACTGTATTCAC 60.278 44.000 0.97 0.00 44.10 3.18
936 942 4.819630 GGTTCAGTTTGGTCACTGTATTCA 59.180 41.667 0.97 0.00 44.10 2.57
937 943 4.215613 GGGTTCAGTTTGGTCACTGTATTC 59.784 45.833 0.97 0.00 44.10 1.75
938 944 4.141251 AGGGTTCAGTTTGGTCACTGTATT 60.141 41.667 0.97 0.00 44.10 1.89
939 945 3.394606 AGGGTTCAGTTTGGTCACTGTAT 59.605 43.478 0.97 0.00 44.10 2.29
940 946 2.775384 AGGGTTCAGTTTGGTCACTGTA 59.225 45.455 0.97 0.00 44.10 2.74
941 947 1.564348 AGGGTTCAGTTTGGTCACTGT 59.436 47.619 0.97 0.00 44.10 3.55
942 948 2.348411 AGGGTTCAGTTTGGTCACTG 57.652 50.000 0.00 0.00 44.96 3.66
943 949 3.314693 TCTAGGGTTCAGTTTGGTCACT 58.685 45.455 0.00 0.00 0.00 3.41
944 950 3.665190 CTCTAGGGTTCAGTTTGGTCAC 58.335 50.000 0.00 0.00 0.00 3.67
945 951 2.038557 GCTCTAGGGTTCAGTTTGGTCA 59.961 50.000 0.00 0.00 0.00 4.02
946 952 2.615747 GGCTCTAGGGTTCAGTTTGGTC 60.616 54.545 0.00 0.00 0.00 4.02
947 953 1.351350 GGCTCTAGGGTTCAGTTTGGT 59.649 52.381 0.00 0.00 0.00 3.67
948 954 1.351017 TGGCTCTAGGGTTCAGTTTGG 59.649 52.381 0.00 0.00 0.00 3.28
949 955 2.859165 TGGCTCTAGGGTTCAGTTTG 57.141 50.000 0.00 0.00 0.00 2.93
950 956 2.711547 ACTTGGCTCTAGGGTTCAGTTT 59.288 45.455 0.00 0.00 0.00 2.66
951 957 2.339769 ACTTGGCTCTAGGGTTCAGTT 58.660 47.619 0.00 0.00 0.00 3.16
952 958 2.031495 ACTTGGCTCTAGGGTTCAGT 57.969 50.000 0.00 0.00 0.00 3.41
953 959 3.425162 AAACTTGGCTCTAGGGTTCAG 57.575 47.619 0.00 0.00 0.00 3.02
954 960 3.908103 ACTAAACTTGGCTCTAGGGTTCA 59.092 43.478 0.00 0.00 0.00 3.18
955 961 4.554960 ACTAAACTTGGCTCTAGGGTTC 57.445 45.455 0.00 0.00 0.00 3.62
956 962 4.995624 AACTAAACTTGGCTCTAGGGTT 57.004 40.909 0.00 0.00 0.00 4.11
957 963 5.046520 CAGTAACTAAACTTGGCTCTAGGGT 60.047 44.000 0.00 0.00 0.00 4.34
958 964 5.046520 ACAGTAACTAAACTTGGCTCTAGGG 60.047 44.000 0.00 0.00 0.00 3.53
959 965 6.038997 ACAGTAACTAAACTTGGCTCTAGG 57.961 41.667 0.00 0.00 0.00 3.02
960 966 8.053026 TCTACAGTAACTAAACTTGGCTCTAG 57.947 38.462 0.00 0.00 0.00 2.43
961 967 8.467598 CATCTACAGTAACTAAACTTGGCTCTA 58.532 37.037 0.00 0.00 0.00 2.43
962 968 6.912951 TCTACAGTAACTAAACTTGGCTCT 57.087 37.500 0.00 0.00 0.00 4.09
963 969 7.097834 ACATCTACAGTAACTAAACTTGGCTC 58.902 38.462 0.00 0.00 0.00 4.70
964 970 7.005709 ACATCTACAGTAACTAAACTTGGCT 57.994 36.000 0.00 0.00 0.00 4.75
965 971 8.767478 TTACATCTACAGTAACTAAACTTGGC 57.233 34.615 0.00 0.00 0.00 4.52
974 980 8.746530 TCGGAGAAAATTACATCTACAGTAACT 58.253 33.333 0.00 0.00 34.59 2.24
975 981 8.922058 TCGGAGAAAATTACATCTACAGTAAC 57.078 34.615 0.00 0.00 34.59 2.50
976 982 9.529325 CATCGGAGAAAATTACATCTACAGTAA 57.471 33.333 0.00 0.00 43.58 2.24
977 983 7.652105 GCATCGGAGAAAATTACATCTACAGTA 59.348 37.037 0.60 0.00 43.58 2.74
978 984 6.480320 GCATCGGAGAAAATTACATCTACAGT 59.520 38.462 0.60 0.00 43.58 3.55
979 985 6.703607 AGCATCGGAGAAAATTACATCTACAG 59.296 38.462 0.00 0.00 43.58 2.74
980 986 6.582636 AGCATCGGAGAAAATTACATCTACA 58.417 36.000 0.00 0.00 43.58 2.74
981 987 6.146347 GGAGCATCGGAGAAAATTACATCTAC 59.854 42.308 0.00 0.00 43.58 2.59
982 988 6.183360 TGGAGCATCGGAGAAAATTACATCTA 60.183 38.462 0.00 0.00 43.58 1.98
983 989 5.059833 GGAGCATCGGAGAAAATTACATCT 58.940 41.667 0.00 0.00 43.58 2.90
984 990 4.816385 TGGAGCATCGGAGAAAATTACATC 59.184 41.667 0.00 0.00 43.58 3.06
985 991 4.780815 TGGAGCATCGGAGAAAATTACAT 58.219 39.130 0.00 0.00 43.58 2.29
986 992 4.081142 TCTGGAGCATCGGAGAAAATTACA 60.081 41.667 0.00 0.00 43.58 2.41
987 993 4.442706 TCTGGAGCATCGGAGAAAATTAC 58.557 43.478 0.00 0.00 43.58 1.89
988 994 4.753516 TCTGGAGCATCGGAGAAAATTA 57.246 40.909 0.00 0.00 43.58 1.40
989 995 3.634397 TCTGGAGCATCGGAGAAAATT 57.366 42.857 0.00 0.00 43.58 1.82
990 996 3.853355 ATCTGGAGCATCGGAGAAAAT 57.147 42.857 0.00 0.00 43.58 1.82
991 997 3.490933 CGTATCTGGAGCATCGGAGAAAA 60.491 47.826 0.00 0.00 43.58 2.29
992 998 2.034685 CGTATCTGGAGCATCGGAGAAA 59.965 50.000 0.00 0.00 43.58 2.52
993 999 1.609072 CGTATCTGGAGCATCGGAGAA 59.391 52.381 0.00 0.00 43.58 2.87
994 1000 1.239347 CGTATCTGGAGCATCGGAGA 58.761 55.000 0.00 0.00 45.75 3.71
995 1001 0.387878 GCGTATCTGGAGCATCGGAG 60.388 60.000 0.00 0.00 34.37 4.63
996 1002 1.660355 GCGTATCTGGAGCATCGGA 59.340 57.895 0.00 0.00 34.37 4.55
997 1003 1.373497 GGCGTATCTGGAGCATCGG 60.373 63.158 0.00 0.00 34.37 4.18
1022 1028 3.183776 GAGTCCGACGAGCCGATCC 62.184 68.421 0.00 0.00 0.00 3.36
1306 1312 1.978455 TTCCATACGAGGCGGCCATT 61.978 55.000 23.09 7.04 0.00 3.16
1308 1314 2.377628 GATTCCATACGAGGCGGCCA 62.378 60.000 23.09 0.00 0.00 5.36
1377 1384 2.634600 TCACCCACCGCACAAATATAC 58.365 47.619 0.00 0.00 0.00 1.47
1378 1385 3.569194 ATCACCCACCGCACAAATATA 57.431 42.857 0.00 0.00 0.00 0.86
1379 1386 2.435372 ATCACCCACCGCACAAATAT 57.565 45.000 0.00 0.00 0.00 1.28
1380 1387 3.351794 TTATCACCCACCGCACAAATA 57.648 42.857 0.00 0.00 0.00 1.40
1381 1388 2.208132 TTATCACCCACCGCACAAAT 57.792 45.000 0.00 0.00 0.00 2.32
1382 1389 1.883275 CTTTATCACCCACCGCACAAA 59.117 47.619 0.00 0.00 0.00 2.83
1383 1390 1.072489 TCTTTATCACCCACCGCACAA 59.928 47.619 0.00 0.00 0.00 3.33
1384 1391 0.687920 TCTTTATCACCCACCGCACA 59.312 50.000 0.00 0.00 0.00 4.57
1385 1392 1.816074 TTCTTTATCACCCACCGCAC 58.184 50.000 0.00 0.00 0.00 5.34
1386 1393 2.224670 ACTTTCTTTATCACCCACCGCA 60.225 45.455 0.00 0.00 0.00 5.69
1387 1394 2.418976 GACTTTCTTTATCACCCACCGC 59.581 50.000 0.00 0.00 0.00 5.68
1388 1395 3.939066 AGACTTTCTTTATCACCCACCG 58.061 45.455 0.00 0.00 0.00 4.94
1389 1396 6.295719 TCTAGACTTTCTTTATCACCCACC 57.704 41.667 0.00 0.00 0.00 4.61
1390 1397 8.794335 AAATCTAGACTTTCTTTATCACCCAC 57.206 34.615 0.00 0.00 0.00 4.61
1400 1407 9.944376 TGTGCTACATAAAATCTAGACTTTCTT 57.056 29.630 1.79 0.00 0.00 2.52
1487 1494 6.489675 CCTGATGAACTTGACATTTATTCCG 58.510 40.000 0.00 0.00 0.00 4.30
1679 1687 5.178797 ACAGAAGGATGTAAATTGACTCCG 58.821 41.667 0.00 0.00 0.00 4.63
1689 1697 5.931294 TGTACCACAAACAGAAGGATGTAA 58.069 37.500 0.00 0.00 31.70 2.41
1691 1699 4.431416 TGTACCACAAACAGAAGGATGT 57.569 40.909 0.00 0.00 33.96 3.06
1692 1700 5.964958 AATGTACCACAAACAGAAGGATG 57.035 39.130 0.00 0.00 0.00 3.51
1724 1733 7.841915 AACAAAACAACCTACATCCTTTTTG 57.158 32.000 0.00 0.00 38.07 2.44
1817 1826 4.106197 GACCGATAGTGTAGCAGAACAAG 58.894 47.826 0.00 0.00 0.00 3.16
2060 2080 3.472283 TTGCATGCAATCAGTGGTTTT 57.528 38.095 28.80 0.00 0.00 2.43
2105 2125 3.469564 GGACATACGACATGGCCAA 57.530 52.632 10.96 0.00 46.48 4.52
2107 2127 1.045407 TAGGGACATACGACATGGCC 58.955 55.000 15.68 15.68 46.51 5.36
2140 2160 7.152645 TGATAGTCTCAGACAACAGGTAAAAC 58.847 38.462 7.77 0.00 34.60 2.43
2207 2227 8.184192 ACGATTCAACTATGGAAAATAGCAAAG 58.816 33.333 0.00 0.00 0.00 2.77
2268 2288 2.153645 ACAGAATGCATGTTCGCAAGA 58.846 42.857 0.00 0.00 46.87 3.02
2400 2422 9.277783 AGTTATGCAAGTTATCCTATCATGAAC 57.722 33.333 0.00 0.00 0.00 3.18
2617 2639 6.318396 ACCGTAACAACTAGCAAAGGTAAAAA 59.682 34.615 0.00 0.00 0.00 1.94
2623 2645 4.142966 GCTAACCGTAACAACTAGCAAAGG 60.143 45.833 0.00 0.00 35.98 3.11
2640 2743 4.635765 TGTTCACAGCTATTGATGCTAACC 59.364 41.667 7.58 0.00 38.92 2.85
2658 2761 7.875554 TGTACATCACTGCTTAACTAATGTTCA 59.124 33.333 0.00 0.00 37.59 3.18
2703 2806 8.630054 AACTACAATTGCTGGTTTACTATCAA 57.370 30.769 5.05 0.00 0.00 2.57
2704 2807 8.630054 AAACTACAATTGCTGGTTTACTATCA 57.370 30.769 16.81 0.00 0.00 2.15
2715 2818 2.094752 CGGGGGAAAACTACAATTGCTG 60.095 50.000 5.05 0.80 0.00 4.41
2807 2910 9.846248 ATAAGTTTCAAAATGACATGTCTAAGC 57.154 29.630 25.55 12.00 0.00 3.09
2842 2945 3.677121 GCTCATCACAACTGCGGATATAG 59.323 47.826 0.00 0.00 0.00 1.31
3279 3383 1.332686 GAGGTGTGTTGTTTTCGGACC 59.667 52.381 0.00 0.00 0.00 4.46
3314 3418 0.913934 TCATGGGCCCAGCTGTAAGA 60.914 55.000 31.97 15.24 34.07 2.10
3316 3420 0.106569 CATCATGGGCCCAGCTGTAA 60.107 55.000 31.97 9.97 0.00 2.41
3492 3596 2.158842 ACAGGGTAGCTGAATGATGAGC 60.159 50.000 0.00 0.00 35.28 4.26
3683 3787 0.394352 GGCATCATCCCGAAACCAGT 60.394 55.000 0.00 0.00 0.00 4.00
4188 4296 7.504924 TGGTAGTTCTGGTTCATAACAAAAG 57.495 36.000 0.00 0.00 0.00 2.27
4211 4319 4.578516 TGAGACACTTATTTGTGGGTGTTG 59.421 41.667 0.00 0.00 42.01 3.33
4354 4467 4.912317 ACCTTTAGGGAACTCCTTTCTC 57.088 45.455 0.10 0.00 45.47 2.87
4356 4469 7.002879 ACTTTTACCTTTAGGGAACTCCTTTC 58.997 38.462 0.10 0.00 45.47 2.62
4357 4470 6.919158 ACTTTTACCTTTAGGGAACTCCTTT 58.081 36.000 0.10 0.00 45.47 3.11
4396 4509 0.247814 GTGCAGATTGAACATCGGCG 60.248 55.000 0.00 0.00 41.11 6.46
4399 4512 2.730090 GCCTTGTGCAGATTGAACATCG 60.730 50.000 0.00 0.00 35.48 3.84
4407 4530 2.679837 CGAACATAGCCTTGTGCAGATT 59.320 45.455 0.00 0.00 44.83 2.40
4484 4607 4.507756 AGAAACCTTTTTGAGATTTTGCGC 59.492 37.500 0.00 0.00 0.00 6.09
4517 4640 7.363443 GCAGATAATAGAACCTCAGAGGGATAC 60.363 44.444 21.31 8.60 40.58 2.24
4534 4657 6.816640 GTGGGCATATCTTTACGCAGATAATA 59.183 38.462 4.24 0.00 38.88 0.98
4535 4658 5.643777 GTGGGCATATCTTTACGCAGATAAT 59.356 40.000 4.24 0.00 38.88 1.28
4536 4659 4.994852 GTGGGCATATCTTTACGCAGATAA 59.005 41.667 4.24 0.00 38.88 1.75
4680 4804 0.671796 GCTACCGTGTTTGGGCTTTT 59.328 50.000 0.00 0.00 0.00 2.27
4711 4847 2.198406 TGTTTTCCGAGACTTCACACG 58.802 47.619 0.00 0.00 0.00 4.49
4735 4871 1.140134 TACTTTTCTGCCTGGCCCCT 61.140 55.000 17.53 0.00 0.00 4.79
4736 4872 0.965866 GTACTTTTCTGCCTGGCCCC 60.966 60.000 17.53 0.00 0.00 5.80
4737 4873 0.251165 TGTACTTTTCTGCCTGGCCC 60.251 55.000 17.53 0.00 0.00 5.80
4738 4874 1.168714 CTGTACTTTTCTGCCTGGCC 58.831 55.000 17.53 0.00 0.00 5.36
4739 4875 0.523519 GCTGTACTTTTCTGCCTGGC 59.476 55.000 12.87 12.87 0.00 4.85
4740 4876 0.798776 CGCTGTACTTTTCTGCCTGG 59.201 55.000 0.00 0.00 0.00 4.45
4741 4877 0.798776 CCGCTGTACTTTTCTGCCTG 59.201 55.000 0.00 0.00 0.00 4.85
4742 4878 0.396811 ACCGCTGTACTTTTCTGCCT 59.603 50.000 0.00 0.00 0.00 4.75
4743 4879 0.517316 CACCGCTGTACTTTTCTGCC 59.483 55.000 0.00 0.00 0.00 4.85
4744 4880 1.508632 TCACCGCTGTACTTTTCTGC 58.491 50.000 0.00 0.00 0.00 4.26
4745 4881 3.307242 GCTATCACCGCTGTACTTTTCTG 59.693 47.826 0.00 0.00 0.00 3.02
4746 4882 3.522553 GCTATCACCGCTGTACTTTTCT 58.477 45.455 0.00 0.00 0.00 2.52
4747 4883 2.281762 CGCTATCACCGCTGTACTTTTC 59.718 50.000 0.00 0.00 0.00 2.29
4748 4884 2.268298 CGCTATCACCGCTGTACTTTT 58.732 47.619 0.00 0.00 0.00 2.27
4749 4885 1.922570 CGCTATCACCGCTGTACTTT 58.077 50.000 0.00 0.00 0.00 2.66
4750 4886 3.642901 CGCTATCACCGCTGTACTT 57.357 52.632 0.00 0.00 0.00 2.24
4758 4894 3.013276 TGAGATTTAGCGCTATCACCG 57.987 47.619 19.60 0.00 0.00 4.94
4759 4895 5.734855 TTTTGAGATTTAGCGCTATCACC 57.265 39.130 19.60 11.06 0.00 4.02
4760 4896 5.201181 GCTTTTGAGATTTAGCGCTATCAC 58.799 41.667 19.60 13.78 0.00 3.06
4761 4897 4.273480 GGCTTTTGAGATTTAGCGCTATCA 59.727 41.667 19.60 15.88 34.50 2.15
4762 4898 4.319839 GGGCTTTTGAGATTTAGCGCTATC 60.320 45.833 19.60 15.05 41.62 2.08
4763 4899 3.565902 GGGCTTTTGAGATTTAGCGCTAT 59.434 43.478 19.60 4.89 41.62 2.97
4764 4900 2.943033 GGGCTTTTGAGATTTAGCGCTA 59.057 45.455 14.45 14.45 41.62 4.26
4765 4901 1.745653 GGGCTTTTGAGATTTAGCGCT 59.254 47.619 17.26 17.26 41.62 5.92
4766 4902 1.472480 TGGGCTTTTGAGATTTAGCGC 59.528 47.619 0.00 0.00 44.11 5.92
4767 4903 3.848272 TTGGGCTTTTGAGATTTAGCG 57.152 42.857 0.00 0.00 34.50 4.26
4768 4904 4.686091 GTGTTTGGGCTTTTGAGATTTAGC 59.314 41.667 0.00 0.00 0.00 3.09
4769 4905 4.917415 CGTGTTTGGGCTTTTGAGATTTAG 59.083 41.667 0.00 0.00 0.00 1.85
4770 4906 4.261825 CCGTGTTTGGGCTTTTGAGATTTA 60.262 41.667 0.00 0.00 0.00 1.40
4771 4907 3.492482 CCGTGTTTGGGCTTTTGAGATTT 60.492 43.478 0.00 0.00 0.00 2.17
4772 4908 2.035832 CCGTGTTTGGGCTTTTGAGATT 59.964 45.455 0.00 0.00 0.00 2.40
4773 4909 1.613437 CCGTGTTTGGGCTTTTGAGAT 59.387 47.619 0.00 0.00 0.00 2.75
4774 4910 1.028905 CCGTGTTTGGGCTTTTGAGA 58.971 50.000 0.00 0.00 0.00 3.27
4775 4911 0.744281 ACCGTGTTTGGGCTTTTGAG 59.256 50.000 0.00 0.00 0.00 3.02
4776 4912 1.950909 CTACCGTGTTTGGGCTTTTGA 59.049 47.619 0.00 0.00 0.00 2.69
4777 4913 1.601914 GCTACCGTGTTTGGGCTTTTG 60.602 52.381 0.00 0.00 0.00 2.44
4778 4914 0.671796 GCTACCGTGTTTGGGCTTTT 59.328 50.000 0.00 0.00 0.00 2.27
4779 4915 0.466555 TGCTACCGTGTTTGGGCTTT 60.467 50.000 0.00 0.00 0.00 3.51
4780 4916 1.149627 TGCTACCGTGTTTGGGCTT 59.850 52.632 0.00 0.00 0.00 4.35
4781 4917 1.599797 GTGCTACCGTGTTTGGGCT 60.600 57.895 0.00 0.00 0.00 5.19
4782 4918 1.852067 CTGTGCTACCGTGTTTGGGC 61.852 60.000 0.00 0.00 0.00 5.36
4783 4919 1.234615 CCTGTGCTACCGTGTTTGGG 61.235 60.000 0.00 0.00 0.00 4.12
4784 4920 1.234615 CCCTGTGCTACCGTGTTTGG 61.235 60.000 0.00 0.00 0.00 3.28
4785 4921 0.534203 ACCCTGTGCTACCGTGTTTG 60.534 55.000 0.00 0.00 0.00 2.93
4786 4922 0.250166 GACCCTGTGCTACCGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
4787 4923 1.370064 GACCCTGTGCTACCGTGTT 59.630 57.895 0.00 0.00 0.00 3.32
4788 4924 1.192146 ATGACCCTGTGCTACCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
4789 4925 0.821517 TATGACCCTGTGCTACCGTG 59.178 55.000 0.00 0.00 0.00 4.94
4790 4926 0.822164 GTATGACCCTGTGCTACCGT 59.178 55.000 0.00 0.00 0.00 4.83
4791 4927 0.248907 CGTATGACCCTGTGCTACCG 60.249 60.000 0.00 0.00 0.00 4.02
4792 4928 0.822164 ACGTATGACCCTGTGCTACC 59.178 55.000 0.00 0.00 0.00 3.18
4793 4929 1.203994 ACACGTATGACCCTGTGCTAC 59.796 52.381 0.00 0.00 35.79 3.58
4794 4930 1.203758 CACACGTATGACCCTGTGCTA 59.796 52.381 0.00 0.00 35.79 3.49
4795 4931 0.037326 CACACGTATGACCCTGTGCT 60.037 55.000 0.00 0.00 35.79 4.40
4796 4932 0.037697 TCACACGTATGACCCTGTGC 60.038 55.000 0.00 0.00 35.08 4.57
4797 4933 2.288825 ACTTCACACGTATGACCCTGTG 60.289 50.000 0.00 0.00 38.28 3.66
4798 4934 1.968493 ACTTCACACGTATGACCCTGT 59.032 47.619 0.00 0.00 0.00 4.00
4799 4935 2.231478 AGACTTCACACGTATGACCCTG 59.769 50.000 0.00 0.00 0.00 4.45
4800 4936 2.492484 GAGACTTCACACGTATGACCCT 59.508 50.000 0.00 0.00 0.00 4.34
4801 4937 2.731341 CGAGACTTCACACGTATGACCC 60.731 54.545 0.00 0.00 0.00 4.46
4802 4938 2.516923 CGAGACTTCACACGTATGACC 58.483 52.381 0.00 0.00 0.00 4.02
4803 4939 2.161012 TCCGAGACTTCACACGTATGAC 59.839 50.000 0.00 0.00 0.00 3.06
4804 4940 2.429478 TCCGAGACTTCACACGTATGA 58.571 47.619 0.00 0.00 0.00 2.15
4805 4941 2.913777 TCCGAGACTTCACACGTATG 57.086 50.000 0.00 0.00 0.00 2.39
4806 4942 3.928727 TTTCCGAGACTTCACACGTAT 57.071 42.857 0.00 0.00 0.00 3.06
4807 4943 3.181488 TGTTTTCCGAGACTTCACACGTA 60.181 43.478 0.00 0.00 0.00 3.57
4808 4944 2.199236 GTTTTCCGAGACTTCACACGT 58.801 47.619 0.00 0.00 0.00 4.49
4809 4945 2.198406 TGTTTTCCGAGACTTCACACG 58.802 47.619 0.00 0.00 0.00 4.49
4810 4946 5.917541 TTATGTTTTCCGAGACTTCACAC 57.082 39.130 0.00 0.00 0.00 3.82
4811 4947 5.468746 CCTTTATGTTTTCCGAGACTTCACA 59.531 40.000 0.00 0.00 0.00 3.58
4812 4948 5.106673 CCCTTTATGTTTTCCGAGACTTCAC 60.107 44.000 0.00 0.00 0.00 3.18
4813 4949 5.001232 CCCTTTATGTTTTCCGAGACTTCA 58.999 41.667 0.00 0.00 0.00 3.02
4814 4950 4.395231 CCCCTTTATGTTTTCCGAGACTTC 59.605 45.833 0.00 0.00 0.00 3.01
4815 4951 4.332828 CCCCTTTATGTTTTCCGAGACTT 58.667 43.478 0.00 0.00 0.00 3.01
4816 4952 3.872630 GCCCCTTTATGTTTTCCGAGACT 60.873 47.826 0.00 0.00 0.00 3.24
4817 4953 2.422479 GCCCCTTTATGTTTTCCGAGAC 59.578 50.000 0.00 0.00 0.00 3.36
4818 4954 2.619590 GGCCCCTTTATGTTTTCCGAGA 60.620 50.000 0.00 0.00 0.00 4.04
4819 4955 1.749063 GGCCCCTTTATGTTTTCCGAG 59.251 52.381 0.00 0.00 0.00 4.63
4820 4956 1.075698 TGGCCCCTTTATGTTTTCCGA 59.924 47.619 0.00 0.00 0.00 4.55
4821 4957 1.551452 TGGCCCCTTTATGTTTTCCG 58.449 50.000 0.00 0.00 0.00 4.30
4822 4958 2.354704 GCTTGGCCCCTTTATGTTTTCC 60.355 50.000 0.00 0.00 0.00 3.13
4823 4959 2.301583 TGCTTGGCCCCTTTATGTTTTC 59.698 45.455 0.00 0.00 0.00 2.29
4824 4960 2.302733 CTGCTTGGCCCCTTTATGTTTT 59.697 45.455 0.00 0.00 0.00 2.43
4825 4961 1.901833 CTGCTTGGCCCCTTTATGTTT 59.098 47.619 0.00 0.00 0.00 2.83
4826 4962 1.077005 TCTGCTTGGCCCCTTTATGTT 59.923 47.619 0.00 0.00 0.00 2.71
4827 4963 0.704076 TCTGCTTGGCCCCTTTATGT 59.296 50.000 0.00 0.00 0.00 2.29
4828 4964 1.851304 TTCTGCTTGGCCCCTTTATG 58.149 50.000 0.00 0.00 0.00 1.90
4829 4965 2.621556 TTTCTGCTTGGCCCCTTTAT 57.378 45.000 0.00 0.00 0.00 1.40
4830 4966 2.247358 CTTTTCTGCTTGGCCCCTTTA 58.753 47.619 0.00 0.00 0.00 1.85
4831 4967 1.051008 CTTTTCTGCTTGGCCCCTTT 58.949 50.000 0.00 0.00 0.00 3.11
4832 4968 0.105504 ACTTTTCTGCTTGGCCCCTT 60.106 50.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.