Multiple sequence alignment - TraesCS1D01G150700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G150700 chr1D 100.000 7492 0 0 1 7492 208418785 208411294 0.000000e+00 13836.0
1 TraesCS1D01G150700 chr1D 93.073 3017 131 36 27 2997 227645648 227648632 0.000000e+00 4342.0
2 TraesCS1D01G150700 chr1D 88.722 1330 109 14 2366 3658 226943494 226944819 0.000000e+00 1587.0
3 TraesCS1D01G150700 chr1D 90.054 925 62 7 2938 3843 227374623 227375536 0.000000e+00 1171.0
4 TraesCS1D01G150700 chr1D 86.161 1055 99 23 5472 6496 227375531 227376568 0.000000e+00 1096.0
5 TraesCS1D01G150700 chr1D 85.961 983 84 17 5472 6422 226944968 226945928 0.000000e+00 1002.0
6 TraesCS1D01G150700 chr1D 89.027 802 61 10 3046 3824 226826316 226827113 0.000000e+00 968.0
7 TraesCS1D01G150700 chr1D 89.985 689 38 10 6575 7251 227650824 227651493 0.000000e+00 861.0
8 TraesCS1D01G150700 chr1D 85.052 863 98 18 3846 4701 19041884 19042722 0.000000e+00 850.0
9 TraesCS1D01G150700 chr1D 91.860 602 33 3 2366 2953 227373947 227374546 0.000000e+00 826.0
10 TraesCS1D01G150700 chr1D 84.149 858 94 15 5665 6495 226827568 226828410 0.000000e+00 793.0
11 TraesCS1D01G150700 chr1D 83.612 897 90 25 5564 6437 223164305 223165167 0.000000e+00 789.0
12 TraesCS1D01G150700 chr1D 87.319 623 66 10 2366 2982 223162701 223163316 0.000000e+00 701.0
13 TraesCS1D01G150700 chr1D 89.218 473 40 7 1360 1824 226943025 226943494 1.400000e-161 580.0
14 TraesCS1D01G150700 chr1D 83.956 642 63 21 1184 1824 227373345 227373947 5.040000e-161 579.0
15 TraesCS1D01G150700 chr1D 87.921 505 43 2 3180 3666 261723862 261724366 5.040000e-161 579.0
16 TraesCS1D01G150700 chr1D 92.529 348 13 6 6247 6589 227650292 227650631 3.140000e-133 486.0
17 TraesCS1D01G150700 chr1D 89.315 365 30 5 1452 1808 226825346 226825709 4.120000e-122 449.0
18 TraesCS1D01G150700 chr1D 85.600 375 44 5 1452 1824 223162335 223162701 1.180000e-102 385.0
19 TraesCS1D01G150700 chr1D 86.022 372 33 11 953 1317 226824654 226825013 1.530000e-101 381.0
20 TraesCS1D01G150700 chr1D 82.635 334 34 13 7175 7492 477792243 477791918 2.660000e-69 274.0
21 TraesCS1D01G150700 chr1D 88.333 240 9 5 7258 7492 227652181 227652406 3.450000e-68 270.0
22 TraesCS1D01G150700 chr1D 88.325 197 13 4 5472 5658 226827132 226827328 2.100000e-55 228.0
23 TraesCS1D01G150700 chr1D 81.818 264 38 7 4562 4820 406666940 406667198 5.890000e-51 213.0
24 TraesCS1D01G150700 chr1D 78.997 319 29 24 251 554 226942270 226942565 4.620000e-42 183.0
25 TraesCS1D01G150700 chr1D 77.816 293 42 17 934 1207 223161668 223161956 7.780000e-35 159.0
26 TraesCS1D01G150700 chr1D 100.000 29 0 0 5521 5549 227649489 227649517 4.000000e-03 54.7
27 TraesCS1D01G150700 chr1B 94.026 2059 77 17 5472 7492 327345115 327347165 0.000000e+00 3079.0
28 TraesCS1D01G150700 chr1B 92.925 1795 74 28 71 1834 327337960 327339732 0.000000e+00 2562.0
29 TraesCS1D01G150700 chr1B 89.458 2049 164 18 3061 5078 327343065 327345092 0.000000e+00 2540.0
30 TraesCS1D01G150700 chr1B 91.539 1501 83 10 2379 3843 327228019 327229511 0.000000e+00 2028.0
31 TraesCS1D01G150700 chr1B 92.688 930 56 7 2144 3072 327340730 327341648 0.000000e+00 1330.0
32 TraesCS1D01G150700 chr1B 86.600 1097 97 16 2610 3679 326912860 326913933 0.000000e+00 1166.0
33 TraesCS1D01G150700 chr1B 85.982 1120 110 21 5472 6562 327229506 327230607 0.000000e+00 1155.0
34 TraesCS1D01G150700 chr1B 85.382 1033 103 25 5457 6469 326914047 326915051 0.000000e+00 1027.0
35 TraesCS1D01G150700 chr1B 82.825 885 88 31 5564 6422 322475506 322476352 0.000000e+00 734.0
36 TraesCS1D01G150700 chr1B 86.538 624 71 9 2366 2982 322473911 322474528 0.000000e+00 675.0
37 TraesCS1D01G150700 chr1B 89.800 451 37 7 1360 1807 326912114 326912558 3.030000e-158 569.0
38 TraesCS1D01G150700 chr1B 88.915 433 45 3 1387 1818 327227569 327227999 1.430000e-146 531.0
39 TraesCS1D01G150700 chr1B 86.083 503 52 8 3180 3664 350442785 350442283 6.660000e-145 525.0
40 TraesCS1D01G150700 chr1B 77.039 797 87 54 6740 7484 665247655 665246903 3.300000e-98 370.0
41 TraesCS1D01G150700 chr1B 86.296 270 25 2 2366 2624 326912575 326912843 4.430000e-72 283.0
42 TraesCS1D01G150700 chr1B 95.333 150 4 1 1965 2114 327340587 327340733 1.260000e-57 235.0
43 TraesCS1D01G150700 chr1B 81.119 286 30 11 6342 6618 665251580 665251310 2.740000e-49 207.0
44 TraesCS1D01G150700 chr1B 78.505 321 29 21 251 554 326911356 326911653 2.780000e-39 174.0
45 TraesCS1D01G150700 chr1B 86.093 151 12 6 1184 1334 326911974 326912115 3.620000e-33 154.0
46 TraesCS1D01G150700 chr1B 93.939 66 4 0 5405 5470 7691086 7691021 4.780000e-17 100.0
47 TraesCS1D01G150700 chr1B 90.909 44 2 2 5514 5556 350442143 350442101 2.920000e-04 58.4
48 TraesCS1D01G150700 chr1A 90.536 1511 97 18 2366 3843 294039808 294041305 0.000000e+00 1956.0
49 TraesCS1D01G150700 chr1A 90.944 784 29 14 6727 7491 294512662 294513422 0.000000e+00 1016.0
50 TraesCS1D01G150700 chr1A 86.920 841 75 14 5472 6282 294041300 294042135 0.000000e+00 911.0
51 TraesCS1D01G150700 chr1A 82.540 1008 111 25 5564 6549 290126432 290127396 0.000000e+00 826.0
52 TraesCS1D01G150700 chr1A 86.817 622 70 9 2366 2982 290124845 290125459 0.000000e+00 684.0
53 TraesCS1D01G150700 chr1A 87.927 439 46 4 1387 1824 294039374 294039806 1.860000e-140 510.0
54 TraesCS1D01G150700 chr1A 86.551 461 52 4 3216 3666 293736788 293737248 4.040000e-137 499.0
55 TraesCS1D01G150700 chr1A 79.370 635 105 19 5688 6306 550218730 550219354 2.500000e-114 424.0
56 TraesCS1D01G150700 chr1A 84.267 375 48 6 1451 1824 290124481 290124845 9.250000e-94 355.0
57 TraesCS1D01G150700 chr1A 81.437 334 36 16 7175 7492 574274337 574274014 4.490000e-62 250.0
58 TraesCS1D01G150700 chr1A 86.916 214 26 2 4562 4773 73317555 73317342 9.720000e-59 239.0
59 TraesCS1D01G150700 chr1A 90.071 141 8 3 1198 1338 294039244 294039378 2.150000e-40 178.0
60 TraesCS1D01G150700 chr1A 82.110 218 28 6 6573 6781 294512463 294512678 7.730000e-40 176.0
61 TraesCS1D01G150700 chr1A 84.906 106 12 3 2256 2359 500975644 500975747 3.700000e-18 104.0
62 TraesCS1D01G150700 chr1A 91.549 71 2 4 5401 5470 589695131 589695064 2.230000e-15 95.3
63 TraesCS1D01G150700 chr1A 94.444 36 1 1 5514 5549 338594024 338593990 4.000000e-03 54.7
64 TraesCS1D01G150700 chr7A 88.379 981 100 13 3848 4818 330437287 330436311 0.000000e+00 1168.0
65 TraesCS1D01G150700 chr7A 81.923 260 39 6 4565 4820 289163078 289163333 5.890000e-51 213.0
66 TraesCS1D01G150700 chr7B 84.880 1164 139 24 3844 4996 548112036 548110899 0.000000e+00 1140.0
67 TraesCS1D01G150700 chr7B 87.080 983 110 13 3843 4818 362036463 362037435 0.000000e+00 1096.0
68 TraesCS1D01G150700 chr7B 83.799 358 31 13 2005 2356 38868202 38868538 1.570000e-81 315.0
69 TraesCS1D01G150700 chr7B 82.123 358 37 11 2005 2356 78160110 78160446 1.590000e-71 281.0
70 TraesCS1D01G150700 chr7B 86.316 95 11 2 4858 4951 685664571 685664478 1.330000e-17 102.0
71 TraesCS1D01G150700 chr7B 78.102 137 22 7 1834 1968 538342296 538342166 6.230000e-11 80.5
72 TraesCS1D01G150700 chr7D 86.694 992 116 10 3843 4823 295759413 295758427 0.000000e+00 1086.0
73 TraesCS1D01G150700 chr7D 89.781 548 51 4 3843 4385 289250755 289251302 0.000000e+00 697.0
74 TraesCS1D01G150700 chr7D 79.034 849 142 31 3844 4678 397563999 397564825 3.950000e-152 549.0
75 TraesCS1D01G150700 chr7D 85.577 104 15 0 2256 2359 111081942 111082045 7.950000e-20 110.0
76 TraesCS1D01G150700 chr4A 84.433 1015 147 11 3843 4850 466814044 466813034 0.000000e+00 989.0
77 TraesCS1D01G150700 chr5D 89.286 728 69 5 3848 4574 70203367 70202648 0.000000e+00 904.0
78 TraesCS1D01G150700 chr5D 77.593 241 42 10 5139 5368 432176882 432176643 1.310000e-27 135.0
79 TraesCS1D01G150700 chr5D 82.979 141 15 7 1823 1960 33849378 33849244 1.320000e-22 119.0
80 TraesCS1D01G150700 chr3A 86.797 462 44 8 3219 3664 668226025 668226485 4.040000e-137 499.0
81 TraesCS1D01G150700 chr3A 94.444 36 1 1 5514 5549 668226627 668226661 4.000000e-03 54.7
82 TraesCS1D01G150700 chr3B 84.254 362 31 11 2005 2361 365354621 365354961 5.600000e-86 329.0
83 TraesCS1D01G150700 chr3B 84.298 363 28 11 2005 2361 783608989 783608650 2.020000e-85 327.0
84 TraesCS1D01G150700 chr3B 83.473 357 32 11 2005 2356 614783413 614783079 2.630000e-79 307.0
85 TraesCS1D01G150700 chr3B 92.647 68 3 2 5405 5470 821311131 821311198 6.190000e-16 97.1
86 TraesCS1D01G150700 chr3B 94.737 57 1 1 1822 1878 693600259 693600313 3.720000e-13 87.9
87 TraesCS1D01G150700 chr3B 92.857 56 2 1 1823 1878 9773822 9773875 6.230000e-11 80.5
88 TraesCS1D01G150700 chr5B 83.754 357 32 11 2005 2356 566328465 566328130 1.570000e-81 315.0
89 TraesCS1D01G150700 chr5B 82.913 357 36 11 2005 2356 567360247 567359911 1.580000e-76 298.0
90 TraesCS1D01G150700 chr5B 90.244 82 4 3 5412 5492 43450378 43450300 3.700000e-18 104.0
91 TraesCS1D01G150700 chr4B 82.402 358 35 12 2005 2356 100537908 100537573 3.420000e-73 287.0
92 TraesCS1D01G150700 chr4B 85.321 109 11 4 2256 2361 43741195 43741301 2.860000e-19 108.0
93 TraesCS1D01G150700 chr4B 94.643 56 1 1 1824 1879 519200896 519200949 1.340000e-12 86.1
94 TraesCS1D01G150700 chr5A 82.824 262 37 6 4566 4823 480291018 480290761 2.100000e-55 228.0
95 TraesCS1D01G150700 chr5A 86.387 191 15 5 2169 2357 530015231 530015050 1.650000e-46 198.0
96 TraesCS1D01G150700 chr5A 83.621 116 15 3 2256 2369 669684757 669684870 1.030000e-18 106.0
97 TraesCS1D01G150700 chr5A 92.453 53 2 1 1823 1875 587558401 587558451 2.900000e-09 75.0
98 TraesCS1D01G150700 chr2B 81.992 261 39 7 4562 4818 707961906 707962162 1.640000e-51 215.0
99 TraesCS1D01G150700 chr2B 89.333 75 4 4 5398 5470 774736855 774736783 2.880000e-14 91.6
100 TraesCS1D01G150700 chr2A 84.034 119 15 3 2256 2372 778038857 778038973 2.210000e-20 111.0
101 TraesCS1D01G150700 chr2A 92.982 57 2 1 1822 1878 701743525 701743471 1.730000e-11 82.4
102 TraesCS1D01G150700 chr6D 98.387 62 1 0 5409 5470 294172591 294172530 7.950000e-20 110.0
103 TraesCS1D01G150700 chr6D 96.774 62 0 2 5409 5470 13673335 13673276 1.330000e-17 102.0
104 TraesCS1D01G150700 chr6B 96.774 62 1 1 5409 5470 77610189 77610249 1.330000e-17 102.0
105 TraesCS1D01G150700 chr6B 95.385 65 1 2 5406 5470 258013035 258012973 1.330000e-17 102.0
106 TraesCS1D01G150700 chr3D 80.282 142 21 6 1823 1963 533146671 533146536 4.780000e-17 100.0
107 TraesCS1D01G150700 chr3D 84.058 69 11 0 2165 2233 562432234 562432166 4.850000e-07 67.6
108 TraesCS1D01G150700 chr3D 100.000 29 0 0 5521 5549 532870814 532870842 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G150700 chr1D 208411294 208418785 7491 True 13836.000000 13836 100.000000 1 7492 1 chr1D.!!$R1 7491
1 TraesCS1D01G150700 chr1D 227645648 227652406 6758 False 1202.740000 4342 92.784000 27 7492 5 chr1D.!!$F8 7465
2 TraesCS1D01G150700 chr1D 227373345 227376568 3223 False 918.000000 1171 88.007750 1184 6496 4 chr1D.!!$F7 5312
3 TraesCS1D01G150700 chr1D 19041884 19042722 838 False 850.000000 850 85.052000 3846 4701 1 chr1D.!!$F1 855
4 TraesCS1D01G150700 chr1D 226942270 226945928 3658 False 838.000000 1587 85.724500 251 6422 4 chr1D.!!$F6 6171
5 TraesCS1D01G150700 chr1D 261723862 261724366 504 False 579.000000 579 87.921000 3180 3666 1 chr1D.!!$F2 486
6 TraesCS1D01G150700 chr1D 226824654 226828410 3756 False 563.800000 968 87.367600 953 6495 5 chr1D.!!$F5 5542
7 TraesCS1D01G150700 chr1D 223161668 223165167 3499 False 508.500000 789 83.586750 934 6437 4 chr1D.!!$F4 5503
8 TraesCS1D01G150700 chr1B 327337960 327347165 9205 False 1949.200000 3079 92.886000 71 7492 5 chr1B.!!$F4 7421
9 TraesCS1D01G150700 chr1B 327227569 327230607 3038 False 1238.000000 2028 88.812000 1387 6562 3 chr1B.!!$F3 5175
10 TraesCS1D01G150700 chr1B 322473911 322476352 2441 False 704.500000 734 84.681500 2366 6422 2 chr1B.!!$F1 4056
11 TraesCS1D01G150700 chr1B 326911356 326915051 3695 False 562.166667 1166 85.446000 251 6469 6 chr1B.!!$F2 6218
12 TraesCS1D01G150700 chr1B 350442101 350442785 684 True 291.700000 525 88.496000 3180 5556 2 chr1B.!!$R2 2376
13 TraesCS1D01G150700 chr1B 665246903 665251580 4677 True 288.500000 370 79.079000 6342 7484 2 chr1B.!!$R3 1142
14 TraesCS1D01G150700 chr1A 294039244 294042135 2891 False 888.750000 1956 88.863500 1198 6282 4 chr1A.!!$F5 5084
15 TraesCS1D01G150700 chr1A 290124481 290127396 2915 False 621.666667 826 84.541333 1451 6549 3 chr1A.!!$F4 5098
16 TraesCS1D01G150700 chr1A 294512463 294513422 959 False 596.000000 1016 86.527000 6573 7491 2 chr1A.!!$F6 918
17 TraesCS1D01G150700 chr1A 550218730 550219354 624 False 424.000000 424 79.370000 5688 6306 1 chr1A.!!$F3 618
18 TraesCS1D01G150700 chr7A 330436311 330437287 976 True 1168.000000 1168 88.379000 3848 4818 1 chr7A.!!$R1 970
19 TraesCS1D01G150700 chr7B 548110899 548112036 1137 True 1140.000000 1140 84.880000 3844 4996 1 chr7B.!!$R2 1152
20 TraesCS1D01G150700 chr7B 362036463 362037435 972 False 1096.000000 1096 87.080000 3843 4818 1 chr7B.!!$F3 975
21 TraesCS1D01G150700 chr7D 295758427 295759413 986 True 1086.000000 1086 86.694000 3843 4823 1 chr7D.!!$R1 980
22 TraesCS1D01G150700 chr7D 289250755 289251302 547 False 697.000000 697 89.781000 3843 4385 1 chr7D.!!$F2 542
23 TraesCS1D01G150700 chr7D 397563999 397564825 826 False 549.000000 549 79.034000 3844 4678 1 chr7D.!!$F3 834
24 TraesCS1D01G150700 chr4A 466813034 466814044 1010 True 989.000000 989 84.433000 3843 4850 1 chr4A.!!$R1 1007
25 TraesCS1D01G150700 chr5D 70202648 70203367 719 True 904.000000 904 89.286000 3848 4574 1 chr5D.!!$R2 726
26 TraesCS1D01G150700 chr3A 668226025 668226661 636 False 276.850000 499 90.620500 3219 5549 2 chr3A.!!$F1 2330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 641 0.252197 AGCGTGGGGGTATTCACTTC 59.748 55.000 0.00 0.00 0.00 3.01 F
754 801 1.003573 ACCCATCTCCCCCTCTGTC 59.996 63.158 0.00 0.00 0.00 3.51 F
2132 3382 0.106819 ATCATGCCTGGGCTCAAGTC 60.107 55.000 13.05 0.00 42.51 3.01 F
2195 3445 1.073722 ATGAGGCACCGCATATGGG 59.926 57.895 12.66 12.66 34.81 4.00 F
3723 6744 0.878416 TGCCAACGGACATTAGCAAC 59.122 50.000 0.00 0.00 0.00 4.17 F
5406 8519 0.169009 GAGGTGCGCATTCCAGTTTC 59.831 55.000 15.91 0.39 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 2137 0.250209 CCTCCATTCTGCATCCGGAG 60.250 60.000 11.34 12.41 42.46 4.63 R
2684 3996 0.251787 GGCACCATCCTTTCTTGGGT 60.252 55.000 0.00 0.00 37.32 4.51 R
3420 6372 1.264288 GCCTTCTTCTGAACCACAACG 59.736 52.381 0.00 0.00 0.00 4.10 R
4120 7197 1.293498 GACACTCCCATGTCGTGCT 59.707 57.895 6.27 0.00 39.69 4.40 R
5437 8550 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13 R
6703 10627 0.879090 GGACAAGTTAAACGCCCTGG 59.121 55.000 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.861797 CGCGCCCCAATCCCTAGT 61.862 66.667 0.00 0.00 0.00 2.57
22 23 2.595655 GCGCCCCAATCCCTAGTT 59.404 61.111 0.00 0.00 0.00 2.24
23 24 1.076995 GCGCCCCAATCCCTAGTTT 60.077 57.895 0.00 0.00 0.00 2.66
24 25 1.384222 GCGCCCCAATCCCTAGTTTG 61.384 60.000 0.00 0.00 0.00 2.93
25 26 1.384222 CGCCCCAATCCCTAGTTTGC 61.384 60.000 0.00 0.00 0.00 3.68
26 27 0.324275 GCCCCAATCCCTAGTTTGCA 60.324 55.000 0.00 0.00 0.00 4.08
27 28 1.767759 CCCCAATCCCTAGTTTGCAG 58.232 55.000 0.00 0.00 0.00 4.41
28 29 1.686115 CCCCAATCCCTAGTTTGCAGG 60.686 57.143 0.00 0.00 0.00 4.85
51 52 2.486042 GAGAGACGGACGCAGGAC 59.514 66.667 0.00 0.00 0.00 3.85
52 53 2.282251 AGAGACGGACGCAGGACA 60.282 61.111 0.00 0.00 0.00 4.02
53 54 2.179517 GAGACGGACGCAGGACAG 59.820 66.667 0.00 0.00 0.00 3.51
54 55 3.343788 GAGACGGACGCAGGACAGG 62.344 68.421 0.00 0.00 0.00 4.00
55 56 3.371063 GACGGACGCAGGACAGGA 61.371 66.667 0.00 0.00 0.00 3.86
76 77 6.154363 CAGGAGAGACAGAGGATAGAAAAGTT 59.846 42.308 0.00 0.00 0.00 2.66
89 90 1.788886 GAAAAGTTACGACGCGGTTCT 59.211 47.619 12.47 0.00 0.00 3.01
93 94 1.000938 AGTTACGACGCGGTTCTTCTT 60.001 47.619 12.47 0.00 0.00 2.52
123 124 1.269413 TGACCGTCGTCCAGAAGAAAC 60.269 52.381 0.00 0.00 38.32 2.78
230 233 1.268899 TCTTCACTTCTTCGTCCCGTC 59.731 52.381 0.00 0.00 0.00 4.79
314 327 5.010012 TCAGGCTTCCACTTTCTCATTTTTC 59.990 40.000 0.00 0.00 0.00 2.29
315 328 4.895297 AGGCTTCCACTTTCTCATTTTTCA 59.105 37.500 0.00 0.00 0.00 2.69
316 329 5.541484 AGGCTTCCACTTTCTCATTTTTCAT 59.459 36.000 0.00 0.00 0.00 2.57
317 330 6.042437 AGGCTTCCACTTTCTCATTTTTCATT 59.958 34.615 0.00 0.00 0.00 2.57
318 331 6.707608 GGCTTCCACTTTCTCATTTTTCATTT 59.292 34.615 0.00 0.00 0.00 2.32
319 332 7.227314 GGCTTCCACTTTCTCATTTTTCATTTT 59.773 33.333 0.00 0.00 0.00 1.82
320 333 8.615211 GCTTCCACTTTCTCATTTTTCATTTTT 58.385 29.630 0.00 0.00 0.00 1.94
393 415 1.381522 TGTGATCGATCGACGGGTAA 58.618 50.000 22.06 1.28 42.82 2.85
422 444 1.657751 CGATCTGCTCGTGGAGTGGA 61.658 60.000 5.89 0.00 42.56 4.02
587 610 0.257039 TCCCCGTGGAGTAGGAGTAC 59.743 60.000 0.00 0.00 35.03 2.73
588 611 0.258194 CCCCGTGGAGTAGGAGTACT 59.742 60.000 0.00 0.00 42.59 2.73
590 613 2.092212 CCCCGTGGAGTAGGAGTACTTA 60.092 54.545 0.00 0.00 39.78 2.24
618 641 0.252197 AGCGTGGGGGTATTCACTTC 59.748 55.000 0.00 0.00 0.00 3.01
722 748 2.288395 CCGGATTCTGCTTTGCTTGTTT 60.288 45.455 0.00 0.00 0.00 2.83
723 749 3.383761 CGGATTCTGCTTTGCTTGTTTT 58.616 40.909 0.00 0.00 0.00 2.43
724 750 3.182972 CGGATTCTGCTTTGCTTGTTTTG 59.817 43.478 0.00 0.00 0.00 2.44
725 751 4.122046 GGATTCTGCTTTGCTTGTTTTGT 58.878 39.130 0.00 0.00 0.00 2.83
726 752 4.025480 GGATTCTGCTTTGCTTGTTTTGTG 60.025 41.667 0.00 0.00 0.00 3.33
728 754 3.924144 TCTGCTTTGCTTGTTTTGTGTT 58.076 36.364 0.00 0.00 0.00 3.32
731 757 3.925913 TGCTTTGCTTGTTTTGTGTTCTC 59.074 39.130 0.00 0.00 0.00 2.87
733 759 4.411327 CTTTGCTTGTTTTGTGTTCTCGA 58.589 39.130 0.00 0.00 0.00 4.04
734 760 3.673746 TGCTTGTTTTGTGTTCTCGAG 57.326 42.857 5.93 5.93 0.00 4.04
735 761 2.354510 TGCTTGTTTTGTGTTCTCGAGG 59.645 45.455 13.56 0.00 0.00 4.63
736 762 2.612212 GCTTGTTTTGTGTTCTCGAGGA 59.388 45.455 13.56 0.00 0.00 3.71
754 801 1.003573 ACCCATCTCCCCCTCTGTC 59.996 63.158 0.00 0.00 0.00 3.51
807 854 1.981312 TCGCTCTCTGCTTCTGCCT 60.981 57.895 0.00 0.00 40.11 4.75
808 855 1.810441 CGCTCTCTGCTTCTGCCTG 60.810 63.158 0.00 0.00 40.11 4.85
812 859 1.758280 CTCTCTGCTTCTGCCTGATCT 59.242 52.381 0.00 0.00 38.71 2.75
932 980 6.708949 TCACTTTACCCTATCTGTTTTGTGTC 59.291 38.462 0.00 0.00 0.00 3.67
995 1043 6.883756 TGTGGTATGATTTAATCTCACTTGCA 59.116 34.615 6.50 0.00 0.00 4.08
996 1044 7.066163 TGTGGTATGATTTAATCTCACTTGCAG 59.934 37.037 6.50 0.00 0.00 4.41
997 1045 7.280876 GTGGTATGATTTAATCTCACTTGCAGA 59.719 37.037 6.50 0.00 0.00 4.26
998 1046 7.496920 TGGTATGATTTAATCTCACTTGCAGAG 59.503 37.037 6.50 0.00 34.42 3.35
999 1047 6.939132 ATGATTTAATCTCACTTGCAGAGG 57.061 37.500 6.50 0.00 33.92 3.69
1057 1105 1.708341 ATGGGCAACTGCAAGAGTTT 58.292 45.000 3.76 0.00 42.70 2.66
1260 1387 7.387948 TCCTTATCTAGAAACACAAAGCTGTTC 59.612 37.037 0.00 0.00 33.03 3.18
1385 1694 4.800993 CAGTGTCTTCTGCCTTATTCTACG 59.199 45.833 0.00 0.00 0.00 3.51
1394 1703 2.224314 GCCTTATTCTACGCCTGATTGC 59.776 50.000 0.00 0.00 0.00 3.56
1414 1758 8.905850 TGATTGCTGACATGAATAAATATGTGT 58.094 29.630 0.00 0.00 37.63 3.72
1558 2060 7.763528 TCTCATAGCATGTTCTCTCTTTCTTTC 59.236 37.037 0.00 0.00 0.00 2.62
1628 2137 1.134995 GCTAGGAAAAGCCCATGTTGC 60.135 52.381 0.00 0.00 36.45 4.17
1728 2237 2.507992 CTGCTTGAGACGGGAGCG 60.508 66.667 0.00 0.00 39.23 5.03
2007 3254 7.595819 TCCTCCTGCAAAAGAAAAGAATTAA 57.404 32.000 0.00 0.00 0.00 1.40
2132 3382 0.106819 ATCATGCCTGGGCTCAAGTC 60.107 55.000 13.05 0.00 42.51 3.01
2191 3441 2.510411 CCCATGAGGCACCGCATA 59.490 61.111 5.55 0.00 34.81 3.14
2193 3443 1.239296 CCCATGAGGCACCGCATATG 61.239 60.000 5.55 0.00 34.81 1.78
2194 3444 1.239296 CCATGAGGCACCGCATATGG 61.239 60.000 5.55 2.31 34.81 2.74
2195 3445 1.073722 ATGAGGCACCGCATATGGG 59.926 57.895 12.66 12.66 34.81 4.00
2196 3446 2.980233 GAGGCACCGCATATGGGC 60.980 66.667 14.08 4.81 0.00 5.36
2198 3448 2.519302 GGCACCGCATATGGGCTT 60.519 61.111 14.08 0.54 0.00 4.35
2199 3449 2.555547 GGCACCGCATATGGGCTTC 61.556 63.158 14.08 4.86 0.00 3.86
2254 3512 3.515502 ACACAGAAGAGGCAATAGCAGTA 59.484 43.478 0.00 0.00 44.61 2.74
2280 3538 3.055458 TGTTCATGGCGAATCCTACTGAA 60.055 43.478 0.00 0.00 35.63 3.02
2372 3630 7.030165 CACTATATAGTAGTGGAGAAATGCCG 58.970 42.308 15.03 0.00 40.76 5.69
2541 3822 3.569701 TGGTGCAGGAAGTGAAGAAATTC 59.430 43.478 0.00 0.00 0.00 2.17
2684 3996 4.627058 TGTTGCTCTTCGTCTTATGACAA 58.373 39.130 9.22 2.65 43.06 3.18
2738 4050 3.798337 GCATGTGGTTTTTGAGTTGTCAG 59.202 43.478 0.00 0.00 32.98 3.51
3003 4416 6.012508 TCTGTAGACCTTCAGGAATTTGGAAT 60.013 38.462 0.00 0.00 38.94 3.01
3009 4422 5.602145 ACCTTCAGGAATTTGGAATGTTCAA 59.398 36.000 0.00 0.00 38.94 2.69
3010 4423 6.099557 ACCTTCAGGAATTTGGAATGTTCAAA 59.900 34.615 0.00 0.00 37.29 2.69
3420 6372 3.008485 TCTCTTCTCCTGAAAAGAAGGCC 59.992 47.826 11.73 0.00 46.37 5.19
3491 6443 2.246327 AGAAGGGGTTTGTCAAAGGGAA 59.754 45.455 0.00 0.00 0.00 3.97
3507 6459 6.208599 TCAAAGGGAAATACACTTGGAACATC 59.791 38.462 0.00 0.00 41.93 3.06
3519 6471 4.339247 ACTTGGAACATCAACAACTTCCTG 59.661 41.667 0.00 0.00 39.30 3.86
3566 6521 2.812011 GTCCTACATTTGAAGTTGGCGT 59.188 45.455 0.00 0.00 32.88 5.68
3649 6637 8.339714 TGTTATCCAACATTTTAGCTTATACGC 58.660 33.333 0.00 0.00 39.75 4.42
3666 6658 7.517893 GCTTATACGCATCCTTTAACTTACCAC 60.518 40.741 0.00 0.00 0.00 4.16
3679 6671 4.602340 ACTTACCACACCTAGTCACTTG 57.398 45.455 0.00 0.00 0.00 3.16
3723 6744 0.878416 TGCCAACGGACATTAGCAAC 59.122 50.000 0.00 0.00 0.00 4.17
3794 6828 6.735130 ACAGTTTAGCTTGATACAACCAAAC 58.265 36.000 0.00 0.00 0.00 2.93
3801 6842 4.739716 GCTTGATACAACCAAACAACTGTG 59.260 41.667 0.00 0.00 0.00 3.66
3846 6891 4.351131 CGTAAAGCATTCCAGTTTACCC 57.649 45.455 0.00 0.00 34.51 3.69
3858 6903 5.209659 TCCAGTTTACCCAAAAAGGCTTTA 58.790 37.500 13.77 0.00 35.39 1.85
3975 7051 4.605967 GTGCCGCACAACACCACG 62.606 66.667 18.79 0.00 34.08 4.94
4042 7119 2.401766 GGAGACGCCGTCGACCTTA 61.402 63.158 22.18 0.00 37.67 2.69
4085 7162 1.779061 AAGTGAGGCCGACCCACAAT 61.779 55.000 18.08 0.53 38.74 2.71
4120 7197 0.832135 AGACGGTGCCTCCAAGAAGA 60.832 55.000 0.00 0.00 35.57 2.87
4130 7207 1.998315 CTCCAAGAAGAGCACGACATG 59.002 52.381 0.00 0.00 0.00 3.21
4317 7397 0.850100 ATCTCCACCAAACCACCACA 59.150 50.000 0.00 0.00 0.00 4.17
4646 7753 4.148825 GACCGCATCGAGGCCACT 62.149 66.667 17.46 0.00 0.00 4.00
4739 7848 4.120331 GCCACCAGCAATCACGCC 62.120 66.667 0.00 0.00 42.97 5.68
4773 7886 0.623723 ATACCAAATGGACCCGCAGT 59.376 50.000 6.42 0.00 38.94 4.40
4779 7892 1.264749 AATGGACCCGCAGTAGCAGA 61.265 55.000 0.00 0.00 42.27 4.26
4804 7917 1.075970 AGCTCACCGGAGATGCCTA 60.076 57.895 9.46 0.00 44.26 3.93
4849 7962 0.467290 GGGAGCAACCAAAGTGGACA 60.467 55.000 0.18 0.00 40.96 4.02
4897 8010 3.721706 GTGCCTCCACTCCCTGGG 61.722 72.222 6.33 6.33 41.06 4.45
4948 8061 1.595993 GAGCAGACGGACACCAGCTA 61.596 60.000 0.00 0.00 31.61 3.32
5014 8127 1.134401 CAACCGCCACACCATCTAGAT 60.134 52.381 0.00 0.00 0.00 1.98
5017 8130 2.239400 CCGCCACACCATCTAGATCTA 58.761 52.381 1.03 1.69 0.00 1.98
5022 8135 3.643320 CCACACCATCTAGATCTAGGCAA 59.357 47.826 26.02 10.51 34.06 4.52
5023 8136 4.262377 CCACACCATCTAGATCTAGGCAAG 60.262 50.000 26.02 15.98 34.06 4.01
5077 8190 2.836888 GGATCCCCACGAATCCCC 59.163 66.667 0.00 0.00 0.00 4.81
5078 8191 2.076184 GGATCCCCACGAATCCCCA 61.076 63.158 0.00 0.00 0.00 4.96
5079 8192 1.148498 GATCCCCACGAATCCCCAC 59.852 63.158 0.00 0.00 0.00 4.61
5080 8193 2.660258 GATCCCCACGAATCCCCACG 62.660 65.000 0.00 0.00 0.00 4.94
5081 8194 3.395702 CCCCACGAATCCCCACGA 61.396 66.667 0.00 0.00 0.00 4.35
5082 8195 2.186903 CCCACGAATCCCCACGAG 59.813 66.667 0.00 0.00 0.00 4.18
5083 8196 2.511600 CCACGAATCCCCACGAGC 60.512 66.667 0.00 0.00 0.00 5.03
5084 8197 2.511600 CACGAATCCCCACGAGCC 60.512 66.667 0.00 0.00 0.00 4.70
5085 8198 4.143333 ACGAATCCCCACGAGCCG 62.143 66.667 0.00 0.00 0.00 5.52
5086 8199 4.143333 CGAATCCCCACGAGCCGT 62.143 66.667 0.00 0.00 42.36 5.68
5106 8219 4.195334 CGGAGGGGGCATGGAAGG 62.195 72.222 0.00 0.00 0.00 3.46
5107 8220 3.825623 GGAGGGGGCATGGAAGGG 61.826 72.222 0.00 0.00 0.00 3.95
5108 8221 3.825623 GAGGGGGCATGGAAGGGG 61.826 72.222 0.00 0.00 0.00 4.79
5109 8222 4.386100 AGGGGGCATGGAAGGGGA 62.386 66.667 0.00 0.00 0.00 4.81
5110 8223 3.825623 GGGGGCATGGAAGGGGAG 61.826 72.222 0.00 0.00 0.00 4.30
5111 8224 3.825623 GGGGCATGGAAGGGGAGG 61.826 72.222 0.00 0.00 0.00 4.30
5112 8225 2.696125 GGGCATGGAAGGGGAGGA 60.696 66.667 0.00 0.00 0.00 3.71
5113 8226 2.761465 GGGCATGGAAGGGGAGGAG 61.761 68.421 0.00 0.00 0.00 3.69
5114 8227 2.761465 GGCATGGAAGGGGAGGAGG 61.761 68.421 0.00 0.00 0.00 4.30
5115 8228 2.922234 CATGGAAGGGGAGGAGGC 59.078 66.667 0.00 0.00 0.00 4.70
5116 8229 2.002977 CATGGAAGGGGAGGAGGCA 61.003 63.158 0.00 0.00 0.00 4.75
5117 8230 1.695597 ATGGAAGGGGAGGAGGCAG 60.696 63.158 0.00 0.00 0.00 4.85
5118 8231 3.803162 GGAAGGGGAGGAGGCAGC 61.803 72.222 0.00 0.00 0.00 5.25
5119 8232 2.690510 GAAGGGGAGGAGGCAGCT 60.691 66.667 0.00 0.00 0.00 4.24
5120 8233 1.383248 GAAGGGGAGGAGGCAGCTA 60.383 63.158 0.00 0.00 0.00 3.32
5121 8234 1.690985 AAGGGGAGGAGGCAGCTAC 60.691 63.158 0.00 0.00 0.00 3.58
5122 8235 3.164977 GGGGAGGAGGCAGCTACC 61.165 72.222 0.00 0.00 0.00 3.18
5123 8236 2.365635 GGGAGGAGGCAGCTACCA 60.366 66.667 5.58 0.00 0.00 3.25
5124 8237 2.439104 GGGAGGAGGCAGCTACCAG 61.439 68.421 5.58 0.00 0.00 4.00
5125 8238 2.439104 GGAGGAGGCAGCTACCAGG 61.439 68.421 5.58 0.00 0.00 4.45
5126 8239 1.381872 GAGGAGGCAGCTACCAGGA 60.382 63.158 5.58 0.00 0.00 3.86
5127 8240 1.681486 GAGGAGGCAGCTACCAGGAC 61.681 65.000 5.58 0.00 0.00 3.85
5128 8241 2.496817 GAGGCAGCTACCAGGACG 59.503 66.667 5.58 0.00 0.00 4.79
5129 8242 2.283966 AGGCAGCTACCAGGACGT 60.284 61.111 5.58 0.00 0.00 4.34
5130 8243 2.184579 GGCAGCTACCAGGACGTC 59.815 66.667 7.13 7.13 0.00 4.34
5131 8244 2.202623 GCAGCTACCAGGACGTCG 60.203 66.667 9.92 0.00 0.00 5.12
5132 8245 2.490217 CAGCTACCAGGACGTCGG 59.510 66.667 9.92 8.76 0.00 4.79
5133 8246 2.754658 AGCTACCAGGACGTCGGG 60.755 66.667 19.82 19.82 36.74 5.14
5134 8247 2.753043 GCTACCAGGACGTCGGGA 60.753 66.667 26.06 12.30 34.65 5.14
5135 8248 2.772691 GCTACCAGGACGTCGGGAG 61.773 68.421 26.06 20.92 34.65 4.30
5136 8249 2.044650 TACCAGGACGTCGGGAGG 60.045 66.667 26.06 18.58 34.65 4.30
5137 8250 2.547640 CTACCAGGACGTCGGGAGGA 62.548 65.000 26.06 12.77 34.65 3.71
5138 8251 2.547640 TACCAGGACGTCGGGAGGAG 62.548 65.000 26.06 7.22 34.65 3.69
5139 8252 3.141488 CAGGACGTCGGGAGGAGG 61.141 72.222 9.92 0.00 36.61 4.30
5140 8253 4.444081 AGGACGTCGGGAGGAGGG 62.444 72.222 9.92 0.00 34.85 4.30
5141 8254 4.437587 GGACGTCGGGAGGAGGGA 62.438 72.222 9.92 0.00 34.85 4.20
5142 8255 2.829458 GACGTCGGGAGGAGGGAG 60.829 72.222 0.00 0.00 34.85 4.30
5143 8256 4.444081 ACGTCGGGAGGAGGGAGG 62.444 72.222 0.00 0.00 34.85 4.30
5145 8258 3.752167 GTCGGGAGGAGGGAGGGA 61.752 72.222 0.00 0.00 0.00 4.20
5146 8259 3.430497 TCGGGAGGAGGGAGGGAG 61.430 72.222 0.00 0.00 0.00 4.30
5148 8261 4.890306 GGGAGGAGGGAGGGAGCC 62.890 77.778 0.00 0.00 0.00 4.70
5179 8292 2.126307 CTCGACACCACCGAGCAG 60.126 66.667 0.00 0.00 45.37 4.24
5180 8293 3.633094 CTCGACACCACCGAGCAGG 62.633 68.421 0.00 0.00 45.37 4.85
5181 8294 4.742201 CGACACCACCGAGCAGGG 62.742 72.222 3.26 0.00 46.96 4.45
5182 8295 4.394712 GACACCACCGAGCAGGGG 62.395 72.222 3.26 0.00 46.96 4.79
5249 8362 4.012895 CCGCTGTCAACGCCACAC 62.013 66.667 0.00 0.00 0.00 3.82
5330 8443 4.770874 TGGCGGCGCTAGGGTTTC 62.771 66.667 32.30 12.78 0.00 2.78
5332 8445 4.468689 GCGGCGCTAGGGTTTCCT 62.469 66.667 26.86 0.00 46.96 3.36
5333 8446 2.202892 CGGCGCTAGGGTTTCCTC 60.203 66.667 7.64 0.00 43.66 3.71
5334 8447 2.189784 GGCGCTAGGGTTTCCTCC 59.810 66.667 7.64 0.00 43.66 4.30
5335 8448 2.189784 GCGCTAGGGTTTCCTCCC 59.810 66.667 8.77 0.00 43.66 4.30
5400 8513 0.598065 AGTTTTGAGGTGCGCATTCC 59.402 50.000 15.91 11.90 0.00 3.01
5401 8514 0.313672 GTTTTGAGGTGCGCATTCCA 59.686 50.000 15.91 9.05 0.00 3.53
5402 8515 0.597568 TTTTGAGGTGCGCATTCCAG 59.402 50.000 15.91 0.00 0.00 3.86
5403 8516 0.537143 TTTGAGGTGCGCATTCCAGT 60.537 50.000 15.91 0.00 0.00 4.00
5404 8517 0.537143 TTGAGGTGCGCATTCCAGTT 60.537 50.000 15.91 0.00 0.00 3.16
5405 8518 0.537143 TGAGGTGCGCATTCCAGTTT 60.537 50.000 15.91 0.00 0.00 2.66
5406 8519 0.169009 GAGGTGCGCATTCCAGTTTC 59.831 55.000 15.91 0.39 0.00 2.78
5407 8520 0.537143 AGGTGCGCATTCCAGTTTCA 60.537 50.000 15.91 0.00 0.00 2.69
5408 8521 0.313672 GGTGCGCATTCCAGTTTCAA 59.686 50.000 15.91 0.00 0.00 2.69
5409 8522 1.067635 GGTGCGCATTCCAGTTTCAAT 60.068 47.619 15.91 0.00 0.00 2.57
5410 8523 2.610232 GGTGCGCATTCCAGTTTCAATT 60.610 45.455 15.91 0.00 0.00 2.32
5411 8524 3.059166 GTGCGCATTCCAGTTTCAATTT 58.941 40.909 15.91 0.00 0.00 1.82
5412 8525 3.494251 GTGCGCATTCCAGTTTCAATTTT 59.506 39.130 15.91 0.00 0.00 1.82
5413 8526 4.024977 GTGCGCATTCCAGTTTCAATTTTT 60.025 37.500 15.91 0.00 0.00 1.94
5433 8546 4.394439 TTTTCTTCGAAAAGGGGGTTTG 57.606 40.909 0.00 0.00 33.03 2.93
5434 8547 1.324383 TCTTCGAAAAGGGGGTTTGC 58.676 50.000 0.00 0.00 33.03 3.68
5435 8548 0.317160 CTTCGAAAAGGGGGTTTGCC 59.683 55.000 0.00 0.00 0.00 4.52
5451 8564 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
5452 8565 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
5453 8566 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
5454 8567 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
5455 8568 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
5456 8569 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
5457 8570 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
5466 8579 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
5467 8580 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
5468 8581 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
5469 8582 2.158769 TCAGAAAGATGCATACGGCCAT 60.159 45.455 2.24 0.00 43.89 4.40
5470 8583 2.031420 CAGAAAGATGCATACGGCCATG 60.031 50.000 2.24 0.07 43.89 3.66
5621 8860 6.017192 TGCCACATACCATCGATTATTTTCTG 60.017 38.462 0.00 0.00 0.00 3.02
5719 9196 2.549134 CCACCATGTCGTGTCCAAAGTA 60.549 50.000 2.08 0.00 31.47 2.24
5727 9211 4.338964 TGTCGTGTCCAAAGTACTGACTAA 59.661 41.667 11.77 0.00 33.58 2.24
5742 9230 0.038310 ACTAAACCCAAGCTCAGCCC 59.962 55.000 0.00 0.00 0.00 5.19
5907 9402 2.092968 TCAGCTTGTACTTATGCCTGGG 60.093 50.000 0.00 0.00 0.00 4.45
6079 9609 7.215789 ACCTCATGATGATTACAGTTGATCTC 58.784 38.462 4.88 0.00 0.00 2.75
6096 9629 7.500227 AGTTGATCTCACTTTTGTCTTGATCAA 59.500 33.333 8.12 8.12 41.48 2.57
6118 9651 7.562135 TCAAAGGTCTCTGGGTATGTAATAAC 58.438 38.462 0.00 0.00 35.15 1.89
6703 10627 1.075600 CCAGGAGGAGGAGGAGGAC 60.076 68.421 0.00 0.00 36.89 3.85
6937 14263 2.900273 CTTCGATCTGCCCCCGAA 59.100 61.111 0.00 0.00 39.58 4.30
7033 14364 3.131223 TCTCTATCTTTTCACCTGCCTCG 59.869 47.826 0.00 0.00 0.00 4.63
7060 14392 1.530323 AAGAACAAACGATTCCCGGG 58.470 50.000 16.85 16.85 43.93 5.73
7255 15283 4.806640 ATTTTGTCCTCGGCAAATTGAT 57.193 36.364 0.00 0.00 35.99 2.57
7256 15284 4.599047 TTTTGTCCTCGGCAAATTGATT 57.401 36.364 0.00 0.00 35.99 2.57
7257 15285 3.574284 TTGTCCTCGGCAAATTGATTG 57.426 42.857 0.00 0.00 42.21 2.67
7258 15286 2.789213 TGTCCTCGGCAAATTGATTGA 58.211 42.857 0.00 0.00 41.85 2.57
7449 15497 5.395324 CCGGGAGTACATGTATGTCTTCTTT 60.395 44.000 9.18 0.00 41.97 2.52
7454 15502 7.246171 AGTACATGTATGTCTTCTTTGTCCT 57.754 36.000 9.18 0.00 41.97 3.85
7475 15523 8.621286 TGTCCTTTTTCTAGTTGAAATTCAGAC 58.379 33.333 0.53 6.77 43.34 3.51
7477 15525 9.057089 TCCTTTTTCTAGTTGAAATTCAGACTC 57.943 33.333 11.89 0.00 43.34 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.886730 AAACTAGGGATTGGGGCGCG 62.887 60.000 0.00 0.00 0.00 6.86
5 6 1.076995 AAACTAGGGATTGGGGCGC 60.077 57.895 0.00 0.00 0.00 6.53
7 8 0.324275 TGCAAACTAGGGATTGGGGC 60.324 55.000 0.00 0.00 0.00 5.80
8 9 1.686115 CCTGCAAACTAGGGATTGGGG 60.686 57.143 0.00 0.00 0.00 4.96
9 10 1.767759 CCTGCAAACTAGGGATTGGG 58.232 55.000 0.00 0.00 0.00 4.12
16 17 0.323629 TCCGTTCCCTGCAAACTAGG 59.676 55.000 0.00 0.00 35.01 3.02
17 18 1.275291 TCTCCGTTCCCTGCAAACTAG 59.725 52.381 0.00 0.00 0.00 2.57
18 19 1.275291 CTCTCCGTTCCCTGCAAACTA 59.725 52.381 0.00 0.00 0.00 2.24
19 20 0.035458 CTCTCCGTTCCCTGCAAACT 59.965 55.000 0.00 0.00 0.00 2.66
20 21 0.034896 TCTCTCCGTTCCCTGCAAAC 59.965 55.000 0.00 0.00 0.00 2.93
21 22 0.034896 GTCTCTCCGTTCCCTGCAAA 59.965 55.000 0.00 0.00 0.00 3.68
22 23 1.671742 GTCTCTCCGTTCCCTGCAA 59.328 57.895 0.00 0.00 0.00 4.08
23 24 2.636412 CGTCTCTCCGTTCCCTGCA 61.636 63.158 0.00 0.00 0.00 4.41
24 25 2.182030 CGTCTCTCCGTTCCCTGC 59.818 66.667 0.00 0.00 0.00 4.85
25 26 1.677966 TCCGTCTCTCCGTTCCCTG 60.678 63.158 0.00 0.00 0.00 4.45
26 27 1.678300 GTCCGTCTCTCCGTTCCCT 60.678 63.158 0.00 0.00 0.00 4.20
27 28 2.883621 GTCCGTCTCTCCGTTCCC 59.116 66.667 0.00 0.00 0.00 3.97
28 29 2.484203 CGTCCGTCTCTCCGTTCC 59.516 66.667 0.00 0.00 0.00 3.62
29 30 2.202453 GCGTCCGTCTCTCCGTTC 60.202 66.667 0.00 0.00 0.00 3.95
30 31 2.979197 CTGCGTCCGTCTCTCCGTT 61.979 63.158 0.00 0.00 0.00 4.44
51 52 5.656416 ACTTTTCTATCCTCTGTCTCTCCTG 59.344 44.000 0.00 0.00 0.00 3.86
52 53 5.837829 ACTTTTCTATCCTCTGTCTCTCCT 58.162 41.667 0.00 0.00 0.00 3.69
53 54 6.538945 AACTTTTCTATCCTCTGTCTCTCC 57.461 41.667 0.00 0.00 0.00 3.71
54 55 7.066043 TCGTAACTTTTCTATCCTCTGTCTCTC 59.934 40.741 0.00 0.00 0.00 3.20
55 56 6.885376 TCGTAACTTTTCTATCCTCTGTCTCT 59.115 38.462 0.00 0.00 0.00 3.10
76 77 1.269206 ACAAAGAAGAACCGCGTCGTA 60.269 47.619 4.92 0.00 0.00 3.43
89 90 1.134521 ACGGTCACAGCTCACAAAGAA 60.135 47.619 0.00 0.00 0.00 2.52
93 94 1.299850 CGACGGTCACAGCTCACAA 60.300 57.895 9.10 0.00 0.00 3.33
314 327 6.586082 CCTGAATCCCTGTTTCGTTAAAAATG 59.414 38.462 0.00 0.00 0.00 2.32
315 328 6.295067 CCCTGAATCCCTGTTTCGTTAAAAAT 60.295 38.462 0.00 0.00 0.00 1.82
316 329 5.010213 CCCTGAATCCCTGTTTCGTTAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
317 330 4.521256 CCCTGAATCCCTGTTTCGTTAAAA 59.479 41.667 0.00 0.00 0.00 1.52
318 331 4.076394 CCCTGAATCCCTGTTTCGTTAAA 58.924 43.478 0.00 0.00 0.00 1.52
319 332 3.073356 ACCCTGAATCCCTGTTTCGTTAA 59.927 43.478 0.00 0.00 0.00 2.01
320 333 2.640826 ACCCTGAATCCCTGTTTCGTTA 59.359 45.455 0.00 0.00 0.00 3.18
321 334 1.423921 ACCCTGAATCCCTGTTTCGTT 59.576 47.619 0.00 0.00 0.00 3.85
358 371 5.241506 TCGATCACAAAAGAAAGCCAAGATT 59.758 36.000 0.00 0.00 0.00 2.40
374 387 1.064505 GTTACCCGTCGATCGATCACA 59.935 52.381 22.50 8.04 42.86 3.58
514 537 4.285863 ACAGAATCTTGAGGGGTAGAGAG 58.714 47.826 0.00 0.00 0.00 3.20
515 538 4.338795 ACAGAATCTTGAGGGGTAGAGA 57.661 45.455 0.00 0.00 0.00 3.10
587 610 2.548067 CCCCCACGCTGCTACTAATAAG 60.548 54.545 0.00 0.00 0.00 1.73
588 611 1.414919 CCCCCACGCTGCTACTAATAA 59.585 52.381 0.00 0.00 0.00 1.40
590 613 0.981277 ACCCCCACGCTGCTACTAAT 60.981 55.000 0.00 0.00 0.00 1.73
618 641 0.904865 GGGGAAAAGCCAGAAAGGGG 60.905 60.000 0.00 0.00 38.95 4.79
722 748 1.275291 GATGGGTCCTCGAGAACACAA 59.725 52.381 11.93 0.00 31.73 3.33
723 749 0.895530 GATGGGTCCTCGAGAACACA 59.104 55.000 9.92 9.92 31.73 3.72
724 750 1.135333 GAGATGGGTCCTCGAGAACAC 59.865 57.143 15.71 5.21 31.73 3.32
725 751 1.475403 GAGATGGGTCCTCGAGAACA 58.525 55.000 15.71 7.37 31.73 3.18
726 752 0.747852 GGAGATGGGTCCTCGAGAAC 59.252 60.000 15.71 2.60 33.30 3.01
728 754 1.230497 GGGAGATGGGTCCTCGAGA 59.770 63.158 15.71 0.00 36.75 4.04
731 757 2.844839 GGGGGAGATGGGTCCTCG 60.845 72.222 0.00 0.00 38.09 4.63
733 759 1.949449 AGAGGGGGAGATGGGTCCT 60.949 63.158 0.00 0.00 36.75 3.85
734 760 1.768077 CAGAGGGGGAGATGGGTCC 60.768 68.421 0.00 0.00 35.64 4.46
735 761 1.003573 ACAGAGGGGGAGATGGGTC 59.996 63.158 0.00 0.00 0.00 4.46
736 762 1.003573 GACAGAGGGGGAGATGGGT 59.996 63.158 0.00 0.00 0.00 4.51
754 801 8.411318 AGAACACAAAACAAAGAGCAAAATAG 57.589 30.769 0.00 0.00 0.00 1.73
807 854 3.196469 AGAACGATCAGGAGCAAAGATCA 59.804 43.478 0.00 0.00 38.40 2.92
808 855 3.791245 AGAACGATCAGGAGCAAAGATC 58.209 45.455 0.00 0.00 35.86 2.75
812 859 2.337583 CGAAGAACGATCAGGAGCAAA 58.662 47.619 0.00 0.00 45.77 3.68
870 918 4.723789 AGAAGGAATCAAGATAGGGCAGAA 59.276 41.667 0.00 0.00 0.00 3.02
995 1043 3.370527 CCTCTTCTCTTCTCGTCTCCTCT 60.371 52.174 0.00 0.00 0.00 3.69
996 1044 2.943033 CCTCTTCTCTTCTCGTCTCCTC 59.057 54.545 0.00 0.00 0.00 3.71
997 1045 2.574369 TCCTCTTCTCTTCTCGTCTCCT 59.426 50.000 0.00 0.00 0.00 3.69
998 1046 2.993937 TCCTCTTCTCTTCTCGTCTCC 58.006 52.381 0.00 0.00 0.00 3.71
999 1047 3.377172 CCTTCCTCTTCTCTTCTCGTCTC 59.623 52.174 0.00 0.00 0.00 3.36
1148 1274 3.119919 GCAAGTGCTCTTCAATTCAGAGG 60.120 47.826 11.55 0.00 38.64 3.69
1260 1387 1.476085 AGACATCAAGACCAGCTCTCG 59.524 52.381 0.00 0.00 0.00 4.04
1385 1694 4.906065 TTATTCATGTCAGCAATCAGGC 57.094 40.909 0.00 0.00 0.00 4.85
1573 2075 9.740239 AGCTGATATTTGTACAAATGCAATAAG 57.260 29.630 33.94 24.47 40.83 1.73
1587 2096 2.674852 CAGTGCACGAGCTGATATTTGT 59.325 45.455 12.01 0.00 42.74 2.83
1628 2137 0.250209 CCTCCATTCTGCATCCGGAG 60.250 60.000 11.34 12.41 42.46 4.63
1748 2257 5.705441 CAGTTATACCCAGAGCAGTGAAAAA 59.295 40.000 0.00 0.00 0.00 1.94
1894 3058 9.804758 CGAATCTACTAGTAAATCTTTTGACCT 57.195 33.333 3.76 0.00 0.00 3.85
1908 3072 5.416271 TCTTTTTGCCCGAATCTACTAGT 57.584 39.130 0.00 0.00 0.00 2.57
1912 3076 8.837389 ACTATATTTCTTTTTGCCCGAATCTAC 58.163 33.333 0.00 0.00 0.00 2.59
2191 3441 3.168292 CCTTCCAGAAAAAGAAGCCCAT 58.832 45.455 0.00 0.00 38.53 4.00
2193 3443 1.895798 CCCTTCCAGAAAAAGAAGCCC 59.104 52.381 0.00 0.00 38.53 5.19
2194 3444 1.273606 GCCCTTCCAGAAAAAGAAGCC 59.726 52.381 0.00 0.00 38.53 4.35
2195 3445 1.273606 GGCCCTTCCAGAAAAAGAAGC 59.726 52.381 0.00 0.00 38.53 3.86
2196 3446 2.597455 TGGCCCTTCCAGAAAAAGAAG 58.403 47.619 0.00 0.00 40.72 2.85
2254 3512 3.845781 AGGATTCGCCATGAACAGTAT 57.154 42.857 0.00 0.00 40.00 2.12
2280 3538 2.559705 CCCCAAAATCCAAGGGCTAAGT 60.560 50.000 0.00 0.00 41.42 2.24
2315 3573 6.932356 TTGAATTGGATCTAGAGCATCAAC 57.068 37.500 10.68 0.00 37.82 3.18
2372 3630 7.993101 ACCTTTTCTACTAAAACAAACCAGAC 58.007 34.615 0.00 0.00 0.00 3.51
2541 3822 7.258441 TCATAACTGAAGTAGGAATGAAGTCG 58.742 38.462 0.00 0.00 32.21 4.18
2684 3996 0.251787 GGCACCATCCTTTCTTGGGT 60.252 55.000 0.00 0.00 37.32 4.51
3003 4416 5.255687 ACATGTCTATGCCATCTTTGAACA 58.744 37.500 0.00 0.00 37.85 3.18
3009 4422 5.587844 GTGAGAAACATGTCTATGCCATCTT 59.412 40.000 0.00 0.00 37.85 2.40
3010 4423 5.104610 AGTGAGAAACATGTCTATGCCATCT 60.105 40.000 0.00 0.00 37.85 2.90
3420 6372 1.264288 GCCTTCTTCTGAACCACAACG 59.736 52.381 0.00 0.00 0.00 4.10
3491 6443 6.959639 AGTTGTTGATGTTCCAAGTGTATT 57.040 33.333 0.00 0.00 0.00 1.89
3507 6459 2.618709 GTCCAGTTCCAGGAAGTTGTTG 59.381 50.000 6.82 0.00 36.80 3.33
3519 6471 5.010282 ACAAAGTTATCCATGTCCAGTTCC 58.990 41.667 0.00 0.00 0.00 3.62
3649 6637 6.708285 ACTAGGTGTGGTAAGTTAAAGGATG 58.292 40.000 0.00 0.00 0.00 3.51
3666 6658 5.360591 AGAAGTTTGTCAAGTGACTAGGTG 58.639 41.667 12.43 0.00 44.99 4.00
3701 6722 2.285083 TGCTAATGTCCGTTGGCATAC 58.715 47.619 6.22 0.00 40.08 2.39
3723 6744 2.929592 GCCTTGCAAAAAGATCTGGCAG 60.930 50.000 15.05 8.58 38.99 4.85
3794 6828 9.803315 TCTGTAAATATACTAGAAGCACAGTTG 57.197 33.333 0.00 0.00 34.08 3.16
3801 6842 9.790389 ACGCATATCTGTAAATATACTAGAAGC 57.210 33.333 0.00 0.00 32.98 3.86
3830 6875 4.040339 CCTTTTTGGGTAAACTGGAATGCT 59.960 41.667 0.00 0.00 0.00 3.79
3975 7051 2.070654 CTTGGTGGCGTTTGGGTGAC 62.071 60.000 0.00 0.00 0.00 3.67
4034 7111 3.568853 GGCTAGCTCATAGTTAAGGTCGA 59.431 47.826 15.72 0.00 33.65 4.20
4042 7119 4.760530 TCACAATGGCTAGCTCATAGTT 57.239 40.909 15.72 0.15 33.65 2.24
4085 7162 2.288825 CCGTCTTGGAGTCTTTGCTACA 60.289 50.000 0.00 0.00 42.00 2.74
4120 7197 1.293498 GACACTCCCATGTCGTGCT 59.707 57.895 6.27 0.00 39.69 4.40
4393 7473 3.950794 GAGGCGCGGTGTTCATGGA 62.951 63.158 8.83 0.00 0.00 3.41
4616 7723 1.741770 GCGGTCATGTCACCTGTCC 60.742 63.158 2.39 0.00 33.77 4.02
4627 7734 3.469970 TGGCCTCGATGCGGTCAT 61.470 61.111 3.32 0.00 29.66 3.06
4646 7753 1.692762 GGAGCTTGGTAGGAGGGATGA 60.693 57.143 0.00 0.00 0.00 2.92
4739 7848 1.525442 GTATCCCTCGTTGGTGGGG 59.475 63.158 0.00 0.00 45.32 4.96
4746 7855 2.092592 GGTCCATTTGGTATCCCTCGTT 60.093 50.000 0.00 0.00 36.34 3.85
4763 7872 2.167398 TTGTCTGCTACTGCGGGTCC 62.167 60.000 0.00 0.00 45.25 4.46
4773 7886 0.898320 GTGAGCTCCCTTGTCTGCTA 59.102 55.000 12.15 0.00 35.76 3.49
4779 7892 2.203788 TCCGGTGAGCTCCCTTGT 60.204 61.111 12.15 0.00 0.00 3.16
4827 7940 2.192861 CACTTTGGTTGCTCCCGCA 61.193 57.895 0.00 0.00 46.24 5.69
4830 7943 0.467290 TGTCCACTTTGGTTGCTCCC 60.467 55.000 0.00 0.00 39.03 4.30
4897 8010 4.228567 GGCTCCGGCTAGACCTGC 62.229 72.222 0.00 0.00 38.73 4.85
4948 8061 2.224769 CCTGTTAAGGTGGTGGTGATGT 60.225 50.000 0.00 0.00 38.96 3.06
4992 8105 1.485294 TAGATGGTGTGGCGGTTGGT 61.485 55.000 0.00 0.00 0.00 3.67
5058 8171 2.426023 GGATTCGTGGGGATCCGG 59.574 66.667 5.45 0.00 35.24 5.14
5088 8201 4.195334 CTTCCATGCCCCCTCCGG 62.195 72.222 0.00 0.00 0.00 5.14
5089 8202 4.195334 CCTTCCATGCCCCCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
5090 8203 3.825623 CCCTTCCATGCCCCCTCC 61.826 72.222 0.00 0.00 0.00 4.30
5091 8204 3.825623 CCCCTTCCATGCCCCCTC 61.826 72.222 0.00 0.00 0.00 4.30
5092 8205 4.386100 TCCCCTTCCATGCCCCCT 62.386 66.667 0.00 0.00 0.00 4.79
5093 8206 3.825623 CTCCCCTTCCATGCCCCC 61.826 72.222 0.00 0.00 0.00 5.40
5094 8207 3.825623 CCTCCCCTTCCATGCCCC 61.826 72.222 0.00 0.00 0.00 5.80
5095 8208 2.696125 TCCTCCCCTTCCATGCCC 60.696 66.667 0.00 0.00 0.00 5.36
5096 8209 2.761465 CCTCCTCCCCTTCCATGCC 61.761 68.421 0.00 0.00 0.00 4.40
5097 8210 2.922234 CCTCCTCCCCTTCCATGC 59.078 66.667 0.00 0.00 0.00 4.06
5098 8211 1.992519 CTGCCTCCTCCCCTTCCATG 61.993 65.000 0.00 0.00 0.00 3.66
5099 8212 1.695597 CTGCCTCCTCCCCTTCCAT 60.696 63.158 0.00 0.00 0.00 3.41
5100 8213 2.285668 CTGCCTCCTCCCCTTCCA 60.286 66.667 0.00 0.00 0.00 3.53
5101 8214 2.898472 TAGCTGCCTCCTCCCCTTCC 62.898 65.000 0.00 0.00 0.00 3.46
5102 8215 1.383248 TAGCTGCCTCCTCCCCTTC 60.383 63.158 0.00 0.00 0.00 3.46
5103 8216 1.690985 GTAGCTGCCTCCTCCCCTT 60.691 63.158 0.00 0.00 0.00 3.95
5104 8217 2.041405 GTAGCTGCCTCCTCCCCT 60.041 66.667 0.00 0.00 0.00 4.79
5105 8218 3.164977 GGTAGCTGCCTCCTCCCC 61.165 72.222 14.43 0.00 0.00 4.81
5106 8219 2.365635 TGGTAGCTGCCTCCTCCC 60.366 66.667 22.25 0.00 0.00 4.30
5107 8220 2.439104 CCTGGTAGCTGCCTCCTCC 61.439 68.421 22.25 1.35 0.00 4.30
5108 8221 1.381872 TCCTGGTAGCTGCCTCCTC 60.382 63.158 22.25 0.00 0.00 3.71
5109 8222 1.687493 GTCCTGGTAGCTGCCTCCT 60.687 63.158 22.25 0.00 0.00 3.69
5110 8223 2.904131 GTCCTGGTAGCTGCCTCC 59.096 66.667 22.25 7.21 0.00 4.30
5111 8224 2.286127 GACGTCCTGGTAGCTGCCTC 62.286 65.000 22.25 6.09 0.00 4.70
5112 8225 2.283966 ACGTCCTGGTAGCTGCCT 60.284 61.111 22.25 0.00 0.00 4.75
5113 8226 2.184579 GACGTCCTGGTAGCTGCC 59.815 66.667 14.87 14.87 0.00 4.85
5114 8227 2.202623 CGACGTCCTGGTAGCTGC 60.203 66.667 10.58 0.00 0.00 5.25
5115 8228 2.490217 CCGACGTCCTGGTAGCTG 59.510 66.667 10.58 0.00 0.00 4.24
5116 8229 2.754658 CCCGACGTCCTGGTAGCT 60.755 66.667 10.58 0.00 0.00 3.32
5117 8230 2.753043 TCCCGACGTCCTGGTAGC 60.753 66.667 10.58 0.00 0.00 3.58
5118 8231 2.119655 CCTCCCGACGTCCTGGTAG 61.120 68.421 10.58 2.47 0.00 3.18
5119 8232 2.044650 CCTCCCGACGTCCTGGTA 60.045 66.667 10.58 0.00 0.00 3.25
5120 8233 3.940506 CTCCTCCCGACGTCCTGGT 62.941 68.421 10.58 0.00 0.00 4.00
5121 8234 3.141488 CTCCTCCCGACGTCCTGG 61.141 72.222 10.58 11.18 0.00 4.45
5122 8235 3.141488 CCTCCTCCCGACGTCCTG 61.141 72.222 10.58 0.85 0.00 3.86
5123 8236 4.444081 CCCTCCTCCCGACGTCCT 62.444 72.222 10.58 0.00 0.00 3.85
5124 8237 4.437587 TCCCTCCTCCCGACGTCC 62.438 72.222 10.58 0.00 0.00 4.79
5125 8238 2.829458 CTCCCTCCTCCCGACGTC 60.829 72.222 5.18 5.18 0.00 4.34
5126 8239 4.444081 CCTCCCTCCTCCCGACGT 62.444 72.222 0.00 0.00 0.00 4.34
5128 8241 3.742248 CTCCCTCCCTCCTCCCGAC 62.742 73.684 0.00 0.00 0.00 4.79
5129 8242 3.430497 CTCCCTCCCTCCTCCCGA 61.430 72.222 0.00 0.00 0.00 5.14
5131 8244 4.890306 GGCTCCCTCCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
5159 8272 4.778415 CTCGGTGGTGTCGAGCCG 62.778 72.222 0.58 0.00 45.67 5.52
5163 8276 3.680786 CCTGCTCGGTGGTGTCGA 61.681 66.667 0.00 0.00 35.24 4.20
5164 8277 4.742201 CCCTGCTCGGTGGTGTCG 62.742 72.222 0.00 0.00 0.00 4.35
5165 8278 4.394712 CCCCTGCTCGGTGGTGTC 62.395 72.222 0.00 0.00 0.00 3.67
5232 8345 4.012895 GTGTGGCGTTGACAGCGG 62.013 66.667 13.73 0.00 35.00 5.52
5233 8346 4.354212 CGTGTGGCGTTGACAGCG 62.354 66.667 7.39 7.39 35.54 5.18
5234 8347 4.012895 CCGTGTGGCGTTGACAGC 62.013 66.667 0.00 0.00 39.32 4.40
5244 8357 3.353836 CGGACAAAGGCCGTGTGG 61.354 66.667 18.57 7.64 43.66 4.17
5313 8426 4.770874 GAAACCCTAGCGCCGCCA 62.771 66.667 4.98 0.00 0.00 5.69
5315 8428 4.468689 AGGAAACCCTAGCGCCGC 62.469 66.667 2.29 0.00 30.72 6.53
5316 8429 2.202892 GAGGAAACCCTAGCGCCG 60.203 66.667 2.29 0.00 33.25 6.46
5317 8430 2.189784 GGAGGAAACCCTAGCGCC 59.810 66.667 2.29 0.00 33.25 6.53
5318 8431 2.189784 GGGAGGAAACCCTAGCGC 59.810 66.667 0.00 0.00 45.90 5.92
5371 8484 2.027100 CACCTCAAAACTCTAGTCCCCC 60.027 54.545 0.00 0.00 0.00 5.40
5372 8485 2.615747 GCACCTCAAAACTCTAGTCCCC 60.616 54.545 0.00 0.00 0.00 4.81
5373 8486 2.701107 GCACCTCAAAACTCTAGTCCC 58.299 52.381 0.00 0.00 0.00 4.46
5374 8487 2.338500 CGCACCTCAAAACTCTAGTCC 58.662 52.381 0.00 0.00 0.00 3.85
5375 8488 1.727335 GCGCACCTCAAAACTCTAGTC 59.273 52.381 0.30 0.00 0.00 2.59
5376 8489 1.070134 TGCGCACCTCAAAACTCTAGT 59.930 47.619 5.66 0.00 0.00 2.57
5411 8524 4.760878 CAAACCCCCTTTTCGAAGAAAAA 58.239 39.130 8.92 0.00 45.90 1.94
5412 8525 3.431068 GCAAACCCCCTTTTCGAAGAAAA 60.431 43.478 0.00 7.58 45.90 2.29
5413 8526 2.101750 GCAAACCCCCTTTTCGAAGAAA 59.898 45.455 0.00 0.00 45.90 2.52
5414 8527 1.684450 GCAAACCCCCTTTTCGAAGAA 59.316 47.619 0.00 0.00 45.90 2.52
5415 8528 1.324383 GCAAACCCCCTTTTCGAAGA 58.676 50.000 0.00 0.00 0.00 2.87
5416 8529 0.317160 GGCAAACCCCCTTTTCGAAG 59.683 55.000 0.00 0.00 0.00 3.79
5417 8530 2.432119 GGCAAACCCCCTTTTCGAA 58.568 52.632 0.00 0.00 0.00 3.71
5418 8531 4.184439 GGCAAACCCCCTTTTCGA 57.816 55.556 0.00 0.00 0.00 3.71
5434 8547 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
5435 8548 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
5436 8549 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
5437 8550 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
5438 8551 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
5447 8560 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
5448 8561 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
5449 8562 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02
5450 8563 2.224606 CATGGCCGTATGCATCTTTCT 58.775 47.619 0.19 0.00 43.89 2.52
5451 8564 2.693797 CATGGCCGTATGCATCTTTC 57.306 50.000 0.19 0.00 43.89 2.62
5459 8572 1.093972 TGAAACTGCATGGCCGTATG 58.906 50.000 0.00 0.00 0.00 2.39
5460 8573 1.832883 TTGAAACTGCATGGCCGTAT 58.167 45.000 0.00 0.00 0.00 3.06
5461 8574 1.832883 ATTGAAACTGCATGGCCGTA 58.167 45.000 0.00 0.00 0.00 4.02
5462 8575 1.745087 CTATTGAAACTGCATGGCCGT 59.255 47.619 0.00 0.00 0.00 5.68
5463 8576 2.016318 TCTATTGAAACTGCATGGCCG 58.984 47.619 0.00 0.00 0.00 6.13
5464 8577 4.454728 TTTCTATTGAAACTGCATGGCC 57.545 40.909 0.00 0.00 37.27 5.36
5643 8882 9.201989 ACATCACTACAGAAGATAATGGAGTAA 57.798 33.333 0.00 0.00 38.58 2.24
5719 9196 2.551071 GCTGAGCTTGGGTTTAGTCAGT 60.551 50.000 0.00 0.00 35.02 3.41
5727 9211 2.777960 TTGGGGCTGAGCTTGGGTT 61.778 57.895 3.72 0.00 0.00 4.11
5742 9230 6.633500 TGGTTACTGAAATCAGAAAGTTGG 57.367 37.500 16.93 0.00 46.59 3.77
5907 9402 2.107953 GGAGCTCATCCGAGGCAC 59.892 66.667 17.19 0.00 38.67 5.01
6079 9609 6.261826 AGAGACCTTTGATCAAGACAAAAGTG 59.738 38.462 8.41 0.05 36.91 3.16
6096 9629 5.070047 CCGTTATTACATACCCAGAGACCTT 59.930 44.000 0.00 0.00 0.00 3.50
6118 9651 2.359107 CATCCCCATCCGCATCCG 60.359 66.667 0.00 0.00 0.00 4.18
6703 10627 0.879090 GGACAAGTTAAACGCCCTGG 59.121 55.000 0.00 0.00 0.00 4.45
6937 14263 1.202940 GGAGAAAGACCTGGCTTGGTT 60.203 52.381 4.42 0.00 41.00 3.67
7033 14364 4.467735 GAATCGTTTGTTCTTTCCAGAGC 58.532 43.478 0.00 0.00 0.00 4.09
7060 14392 2.304221 AAACCCTAAAACCCTCTGCC 57.696 50.000 0.00 0.00 0.00 4.85
7141 14474 5.758924 AGGTTCAGCTTTGTCGAAAATAAC 58.241 37.500 0.00 0.00 0.00 1.89
7255 15283 5.067273 ACCACTTGGACGTAAATCAATCAA 58.933 37.500 1.14 0.00 38.94 2.57
7256 15284 4.647611 ACCACTTGGACGTAAATCAATCA 58.352 39.130 1.14 0.00 38.94 2.57
7257 15285 6.370718 ACTTACCACTTGGACGTAAATCAATC 59.629 38.462 1.14 0.00 38.94 2.67
7258 15286 6.235664 ACTTACCACTTGGACGTAAATCAAT 58.764 36.000 1.14 0.00 38.94 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.