Multiple sequence alignment - TraesCS1D01G149800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G149800 chr1D 100.000 5387 0 0 1 5387 206306460 206311846 0.000000e+00 9949.0
1 TraesCS1D01G149800 chr1A 90.521 2880 141 37 2594 5387 264215708 264212875 0.000000e+00 3685.0
2 TraesCS1D01G149800 chr1A 95.670 739 25 3 1548 2286 264216650 264215919 0.000000e+00 1181.0
3 TraesCS1D01G149800 chr1A 94.964 417 12 4 782 1193 264217999 264217587 0.000000e+00 645.0
4 TraesCS1D01G149800 chr1A 92.819 376 24 3 1 375 59780368 59780741 4.750000e-150 542.0
5 TraesCS1D01G149800 chr1A 90.883 351 13 4 1204 1551 264217112 264216778 2.290000e-123 453.0
6 TraesCS1D01G149800 chr1A 85.024 414 28 8 375 780 264218360 264217973 1.820000e-104 390.0
7 TraesCS1D01G149800 chr1A 94.702 151 5 2 2329 2477 264215920 264215771 1.170000e-56 231.0
8 TraesCS1D01G149800 chr1A 97.059 34 0 1 1379 1412 249748524 249748492 7.540000e-04 56.5
9 TraesCS1D01G149800 chr1B 90.830 2290 112 35 2594 4819 302035289 302037544 0.000000e+00 2976.0
10 TraesCS1D01G149800 chr1B 92.946 1049 48 17 1244 2286 302033848 302034876 0.000000e+00 1504.0
11 TraesCS1D01G149800 chr1B 88.746 853 44 18 369 1206 302032561 302033376 0.000000e+00 996.0
12 TraesCS1D01G149800 chr1B 86.486 481 48 12 4903 5374 302038687 302039159 3.720000e-141 512.0
13 TraesCS1D01G149800 chr1B 96.000 150 4 1 2329 2476 302034875 302035024 5.390000e-60 243.0
14 TraesCS1D01G149800 chr1B 86.364 66 5 2 1471 1536 302758542 302758603 9.680000e-08 69.4
15 TraesCS1D01G149800 chr7D 96.000 375 12 3 1 374 473577431 473577059 1.660000e-169 606.0
16 TraesCS1D01G149800 chr7D 93.600 375 19 4 1 374 108986570 108986940 6.100000e-154 555.0
17 TraesCS1D01G149800 chr7D 92.368 380 26 3 1 379 573717963 573717586 6.140000e-149 538.0
18 TraesCS1D01G149800 chr6B 92.670 382 22 4 1 381 223037480 223037856 3.670000e-151 545.0
19 TraesCS1D01G149800 chr6B 87.879 66 5 3 2262 2326 673619709 673619772 2.080000e-09 75.0
20 TraesCS1D01G149800 chr3D 91.837 392 28 4 1 390 115643351 115642962 1.320000e-150 544.0
21 TraesCS1D01G149800 chr3D 98.113 53 1 0 2278 2330 300775576 300775524 5.740000e-15 93.5
22 TraesCS1D01G149800 chr3D 92.982 57 3 1 2274 2330 14297367 14297312 1.240000e-11 82.4
23 TraesCS1D01G149800 chr5D 92.800 375 23 3 1 374 412713819 412714190 1.710000e-149 540.0
24 TraesCS1D01G149800 chr5D 92.147 382 28 2 1 381 230014213 230013833 6.140000e-149 538.0
25 TraesCS1D01G149800 chr5D 79.518 166 24 7 2118 2283 373930423 373930268 5.700000e-20 110.0
26 TraesCS1D01G149800 chr4A 92.800 375 23 3 1 374 85588245 85588616 1.710000e-149 540.0
27 TraesCS1D01G149800 chr4A 94.000 50 3 0 1462 1511 90090608 90090657 5.790000e-10 76.8
28 TraesCS1D01G149800 chr4A 88.525 61 6 1 1471 1530 740378555 740378495 7.480000e-09 73.1
29 TraesCS1D01G149800 chr6D 92.537 67 3 2 1470 1534 79644265 79644331 1.600000e-15 95.3
30 TraesCS1D01G149800 chr4D 93.548 62 1 3 2272 2330 489440940 489441001 7.430000e-14 89.8
31 TraesCS1D01G149800 chr4D 92.982 57 3 1 2274 2330 213708422 213708367 1.240000e-11 82.4
32 TraesCS1D01G149800 chrUn 93.220 59 3 1 2272 2330 16761846 16761903 9.610000e-13 86.1
33 TraesCS1D01G149800 chrUn 93.103 58 3 1 1471 1528 12469852 12469908 3.460000e-12 84.2
34 TraesCS1D01G149800 chr7A 97.959 49 1 0 2282 2330 495258198 495258246 9.610000e-13 86.1
35 TraesCS1D01G149800 chr6A 93.103 58 4 0 1469 1526 614294650 614294707 9.610000e-13 86.1
36 TraesCS1D01G149800 chr3B 96.154 52 2 0 2279 2330 702194556 702194505 9.610000e-13 86.1
37 TraesCS1D01G149800 chr3B 94.340 53 3 0 2278 2330 793080135 793080187 1.240000e-11 82.4
38 TraesCS1D01G149800 chr7B 94.231 52 2 1 1461 1511 673616976 673617027 1.610000e-10 78.7
39 TraesCS1D01G149800 chr7B 87.692 65 5 2 1449 1511 255035337 255035274 7.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G149800 chr1D 206306460 206311846 5386 False 9949.0 9949 100.000000 1 5387 1 chr1D.!!$F1 5386
1 TraesCS1D01G149800 chr1A 264212875 264218360 5485 True 1097.5 3685 91.960667 375 5387 6 chr1A.!!$R2 5012
2 TraesCS1D01G149800 chr1B 302032561 302039159 6598 False 1246.2 2976 91.001600 369 5374 5 chr1B.!!$F2 5005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.034756 TGGCGCAGTCTGTGTGTTAT 59.965 50.0 10.83 0.00 39.06 1.89 F
615 619 0.179045 AATATTCTCAAGCGGCGCCT 60.179 50.0 30.40 14.31 0.00 5.52 F
958 967 0.463654 ACTTGGACAGCAAACGAGCA 60.464 50.0 0.00 0.00 36.85 4.26 F
2651 3898 0.038166 TCAACCCACCTCCAATCTGC 59.962 55.0 0.00 0.00 0.00 4.26 F
2703 3950 0.597072 AGAGACCGACGGTGAGAAAC 59.403 55.0 27.26 8.81 35.25 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 3212 1.069049 GCTTCCAGCATTTTGTGTGGT 59.931 47.619 0.00 0.00 41.89 4.16 R
2581 3828 1.502640 CTCTGACGGTCTGACGGAC 59.497 63.158 20.36 14.94 43.79 4.79 R
2682 3929 0.250597 TTCTCACCGTCGGTCTCTGA 60.251 55.000 15.67 8.08 31.02 3.27 R
4287 5604 0.036732 CCTCAGGGCACTGCAGTTTA 59.963 55.000 18.94 0.00 44.54 2.01 R
4406 5723 1.171308 GTACGTACTCAGGTGAGGCA 58.829 55.000 18.47 0.00 46.13 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
75 76 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
76 77 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
77 78 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
78 79 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
79 80 5.039333 GCTGAAACATATCATGGCAACTTC 58.961 41.667 0.00 0.00 37.61 3.01
80 81 5.393352 GCTGAAACATATCATGGCAACTTCA 60.393 40.000 0.00 0.00 37.61 3.02
81 82 6.198650 TGAAACATATCATGGCAACTTCAG 57.801 37.500 0.00 0.00 37.61 3.02
82 83 5.711506 TGAAACATATCATGGCAACTTCAGT 59.288 36.000 0.00 0.00 37.61 3.41
83 84 5.571784 AACATATCATGGCAACTTCAGTG 57.428 39.130 0.00 0.00 37.61 3.66
84 85 4.592942 ACATATCATGGCAACTTCAGTGT 58.407 39.130 0.00 0.00 37.61 3.55
85 86 5.744171 ACATATCATGGCAACTTCAGTGTA 58.256 37.500 0.00 0.00 37.61 2.90
86 87 6.179756 ACATATCATGGCAACTTCAGTGTAA 58.820 36.000 0.00 0.00 37.61 2.41
87 88 6.658816 ACATATCATGGCAACTTCAGTGTAAA 59.341 34.615 0.00 0.00 37.61 2.01
88 89 4.829064 TCATGGCAACTTCAGTGTAAAC 57.171 40.909 0.00 0.00 37.61 2.01
89 90 4.203226 TCATGGCAACTTCAGTGTAAACA 58.797 39.130 0.00 0.00 37.61 2.83
90 91 4.036262 TCATGGCAACTTCAGTGTAAACAC 59.964 41.667 5.07 5.07 42.11 3.32
91 92 2.685897 TGGCAACTTCAGTGTAAACACC 59.314 45.455 9.57 0.00 42.53 4.16
92 93 3.874193 TGGCAACTTCAGTGTAAACACCA 60.874 43.478 9.57 0.00 42.53 4.17
93 94 5.171376 TGGCAACTTCAGTGTAAACACCAT 61.171 41.667 9.57 0.00 42.53 3.55
94 95 7.172943 TGGCAACTTCAGTGTAAACACCATG 62.173 44.000 9.57 3.24 42.53 3.66
102 103 3.241701 GTGTAAACACCATGGCAATTCG 58.758 45.455 13.04 0.00 40.85 3.34
103 104 2.887783 TGTAAACACCATGGCAATTCGT 59.112 40.909 13.04 0.00 0.00 3.85
104 105 2.437200 AAACACCATGGCAATTCGTG 57.563 45.000 13.04 2.84 0.00 4.35
105 106 1.327303 AACACCATGGCAATTCGTGT 58.673 45.000 13.04 3.58 39.27 4.49
106 107 0.597568 ACACCATGGCAATTCGTGTG 59.402 50.000 13.04 1.18 36.37 3.82
107 108 0.733566 CACCATGGCAATTCGTGTGC 60.734 55.000 13.04 0.08 41.45 4.57
108 109 1.177895 ACCATGGCAATTCGTGTGCA 61.178 50.000 13.04 0.00 44.07 4.57
109 110 0.038435 CCATGGCAATTCGTGTGCAA 60.038 50.000 0.00 0.00 44.07 4.08
110 111 1.404449 CCATGGCAATTCGTGTGCAAT 60.404 47.619 0.00 1.88 44.07 3.56
111 112 2.159268 CCATGGCAATTCGTGTGCAATA 60.159 45.455 0.00 0.00 44.07 1.90
112 113 3.509740 CATGGCAATTCGTGTGCAATAA 58.490 40.909 0.00 0.00 44.07 1.40
113 114 3.650070 TGGCAATTCGTGTGCAATAAA 57.350 38.095 9.31 0.00 44.07 1.40
114 115 3.312828 TGGCAATTCGTGTGCAATAAAC 58.687 40.909 9.31 0.00 44.07 2.01
115 116 3.243535 TGGCAATTCGTGTGCAATAAACA 60.244 39.130 9.31 0.00 44.07 2.83
116 117 3.925913 GGCAATTCGTGTGCAATAAACAT 59.074 39.130 9.31 0.00 44.07 2.71
117 118 4.201608 GGCAATTCGTGTGCAATAAACATG 60.202 41.667 9.31 0.00 44.07 3.21
118 119 4.201608 GCAATTCGTGTGCAATAAACATGG 60.202 41.667 0.00 0.00 41.80 3.66
119 120 2.627863 TCGTGTGCAATAAACATGGC 57.372 45.000 0.00 0.00 35.63 4.40
120 121 1.882623 TCGTGTGCAATAAACATGGCA 59.117 42.857 0.00 0.00 35.63 4.92
121 122 2.294512 TCGTGTGCAATAAACATGGCAA 59.705 40.909 0.00 0.00 38.10 4.52
122 123 2.408032 CGTGTGCAATAAACATGGCAAC 59.592 45.455 0.00 0.00 38.10 4.17
123 124 3.652274 GTGTGCAATAAACATGGCAACT 58.348 40.909 0.00 0.00 38.10 3.16
124 125 4.057432 GTGTGCAATAAACATGGCAACTT 58.943 39.130 0.00 0.00 38.10 2.66
125 126 4.511082 GTGTGCAATAAACATGGCAACTTT 59.489 37.500 0.00 0.00 38.10 2.66
126 127 5.007528 GTGTGCAATAAACATGGCAACTTTT 59.992 36.000 0.00 0.00 38.10 2.27
127 128 6.201806 GTGTGCAATAAACATGGCAACTTTTA 59.798 34.615 0.00 0.00 38.10 1.52
128 129 6.763135 TGTGCAATAAACATGGCAACTTTTAA 59.237 30.769 0.00 0.00 38.10 1.52
129 130 7.068955 GTGCAATAAACATGGCAACTTTTAAC 58.931 34.615 0.00 0.00 38.10 2.01
130 131 6.203723 TGCAATAAACATGGCAACTTTTAACC 59.796 34.615 0.00 0.00 32.54 2.85
131 132 6.348132 GCAATAAACATGGCAACTTTTAACCC 60.348 38.462 0.00 0.00 37.61 4.11
132 133 3.762407 AACATGGCAACTTTTAACCCC 57.238 42.857 0.00 0.00 37.61 4.95
133 134 1.974957 ACATGGCAACTTTTAACCCCC 59.025 47.619 0.00 0.00 37.61 5.40
134 135 1.974236 CATGGCAACTTTTAACCCCCA 59.026 47.619 0.00 0.00 37.61 4.96
135 136 2.176247 TGGCAACTTTTAACCCCCAA 57.824 45.000 0.00 0.00 37.61 4.12
136 137 2.478292 TGGCAACTTTTAACCCCCAAA 58.522 42.857 0.00 0.00 37.61 3.28
137 138 2.844348 TGGCAACTTTTAACCCCCAAAA 59.156 40.909 0.00 0.00 37.61 2.44
138 139 3.265995 TGGCAACTTTTAACCCCCAAAAA 59.734 39.130 0.00 0.00 37.61 1.94
202 203 2.727777 TCGTCGCGAGAGATTTAATGG 58.272 47.619 10.24 0.00 43.49 3.16
203 204 2.098607 TCGTCGCGAGAGATTTAATGGT 59.901 45.455 10.24 0.00 43.49 3.55
204 205 2.216488 CGTCGCGAGAGATTTAATGGTG 59.784 50.000 10.24 0.00 43.49 4.17
205 206 3.444916 GTCGCGAGAGATTTAATGGTGA 58.555 45.455 10.24 0.00 43.49 4.02
206 207 3.863424 GTCGCGAGAGATTTAATGGTGAA 59.137 43.478 10.24 0.00 43.49 3.18
207 208 4.328983 GTCGCGAGAGATTTAATGGTGAAA 59.671 41.667 10.24 0.00 43.49 2.69
208 209 4.932799 TCGCGAGAGATTTAATGGTGAAAA 59.067 37.500 3.71 0.00 34.84 2.29
209 210 5.022021 CGCGAGAGATTTAATGGTGAAAAC 58.978 41.667 0.00 0.00 0.00 2.43
210 211 5.390461 CGCGAGAGATTTAATGGTGAAAACA 60.390 40.000 0.00 0.00 0.00 2.83
211 212 6.024049 GCGAGAGATTTAATGGTGAAAACAG 58.976 40.000 0.00 0.00 0.00 3.16
212 213 6.128282 GCGAGAGATTTAATGGTGAAAACAGA 60.128 38.462 0.00 0.00 0.00 3.41
213 214 7.414540 GCGAGAGATTTAATGGTGAAAACAGAT 60.415 37.037 0.00 0.00 0.00 2.90
214 215 8.119226 CGAGAGATTTAATGGTGAAAACAGATC 58.881 37.037 0.00 0.00 0.00 2.75
215 216 9.171877 GAGAGATTTAATGGTGAAAACAGATCT 57.828 33.333 0.00 0.00 0.00 2.75
216 217 9.525826 AGAGATTTAATGGTGAAAACAGATCTT 57.474 29.630 0.00 0.00 0.00 2.40
217 218 9.780413 GAGATTTAATGGTGAAAACAGATCTTC 57.220 33.333 0.00 0.00 0.00 2.87
218 219 9.300681 AGATTTAATGGTGAAAACAGATCTTCA 57.699 29.630 0.00 0.00 0.00 3.02
219 220 9.912634 GATTTAATGGTGAAAACAGATCTTCAA 57.087 29.630 0.00 0.00 33.52 2.69
222 223 9.695526 TTAATGGTGAAAACAGATCTTCAATTG 57.304 29.630 0.00 0.00 33.52 2.32
223 224 6.088016 TGGTGAAAACAGATCTTCAATTGG 57.912 37.500 5.42 0.00 33.52 3.16
224 225 5.832595 TGGTGAAAACAGATCTTCAATTGGA 59.167 36.000 5.42 0.00 33.52 3.53
225 226 6.494491 TGGTGAAAACAGATCTTCAATTGGAT 59.506 34.615 5.42 1.02 33.52 3.41
226 227 7.015487 TGGTGAAAACAGATCTTCAATTGGATT 59.985 33.333 5.42 0.00 33.52 3.01
227 228 7.874528 GGTGAAAACAGATCTTCAATTGGATTT 59.125 33.333 5.42 0.00 33.52 2.17
228 229 9.264719 GTGAAAACAGATCTTCAATTGGATTTT 57.735 29.630 5.42 0.00 33.52 1.82
229 230 9.835389 TGAAAACAGATCTTCAATTGGATTTTT 57.165 25.926 5.42 5.67 0.00 1.94
279 280 9.889128 AAAACTGAAAATCCAAAAAGATTCTCA 57.111 25.926 0.00 0.00 35.40 3.27
280 281 8.877808 AACTGAAAATCCAAAAAGATTCTCAC 57.122 30.769 0.00 0.00 35.40 3.51
281 282 8.010733 ACTGAAAATCCAAAAAGATTCTCACA 57.989 30.769 0.00 0.00 35.40 3.58
282 283 8.645110 ACTGAAAATCCAAAAAGATTCTCACAT 58.355 29.630 0.00 0.00 35.40 3.21
283 284 8.821147 TGAAAATCCAAAAAGATTCTCACATG 57.179 30.769 0.00 0.00 35.40 3.21
284 285 7.385752 TGAAAATCCAAAAAGATTCTCACATGC 59.614 33.333 0.00 0.00 35.40 4.06
285 286 5.988310 ATCCAAAAAGATTCTCACATGCA 57.012 34.783 0.00 0.00 0.00 3.96
286 287 5.988310 TCCAAAAAGATTCTCACATGCAT 57.012 34.783 0.00 0.00 0.00 3.96
287 288 5.716094 TCCAAAAAGATTCTCACATGCATG 58.284 37.500 25.09 25.09 0.00 4.06
288 289 4.328983 CCAAAAAGATTCTCACATGCATGC 59.671 41.667 26.53 11.82 0.00 4.06
289 290 4.794278 AAAAGATTCTCACATGCATGCA 57.206 36.364 26.53 25.04 0.00 3.96
290 291 5.339008 AAAAGATTCTCACATGCATGCAT 57.661 34.783 27.46 27.46 37.08 3.96
310 311 4.664677 GGTGACGTGGCGCAGTCT 62.665 66.667 23.47 0.00 38.16 3.24
311 312 3.406361 GTGACGTGGCGCAGTCTG 61.406 66.667 23.47 0.00 38.16 3.51
312 313 3.911698 TGACGTGGCGCAGTCTGT 61.912 61.111 23.47 9.86 38.16 3.41
313 314 3.406361 GACGTGGCGCAGTCTGTG 61.406 66.667 10.83 9.13 34.74 3.66
314 315 4.221422 ACGTGGCGCAGTCTGTGT 62.221 61.111 10.83 0.00 0.00 3.72
315 316 3.705638 CGTGGCGCAGTCTGTGTG 61.706 66.667 10.83 0.37 39.92 3.82
316 317 2.588877 GTGGCGCAGTCTGTGTGT 60.589 61.111 10.83 0.00 39.06 3.72
317 318 2.180204 GTGGCGCAGTCTGTGTGTT 61.180 57.895 10.83 0.00 39.06 3.32
318 319 0.878523 GTGGCGCAGTCTGTGTGTTA 60.879 55.000 10.83 0.00 39.06 2.41
319 320 0.034756 TGGCGCAGTCTGTGTGTTAT 59.965 50.000 10.83 0.00 39.06 1.89
320 321 1.156736 GGCGCAGTCTGTGTGTTATT 58.843 50.000 10.83 0.00 39.06 1.40
321 322 1.135972 GGCGCAGTCTGTGTGTTATTG 60.136 52.381 10.83 0.00 39.06 1.90
322 323 1.135972 GCGCAGTCTGTGTGTTATTGG 60.136 52.381 14.69 0.00 39.06 3.16
323 324 1.464608 CGCAGTCTGTGTGTTATTGGG 59.535 52.381 5.17 0.00 31.43 4.12
324 325 1.200020 GCAGTCTGTGTGTTATTGGGC 59.800 52.381 0.93 0.00 0.00 5.36
325 326 1.464608 CAGTCTGTGTGTTATTGGGCG 59.535 52.381 0.00 0.00 0.00 6.13
326 327 1.071699 AGTCTGTGTGTTATTGGGCGT 59.928 47.619 0.00 0.00 0.00 5.68
327 328 1.196808 GTCTGTGTGTTATTGGGCGTG 59.803 52.381 0.00 0.00 0.00 5.34
328 329 1.202710 TCTGTGTGTTATTGGGCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
329 330 0.947960 TGTGTGTTATTGGGCGTGTG 59.052 50.000 0.00 0.00 0.00 3.82
330 331 0.239879 GTGTGTTATTGGGCGTGTGG 59.760 55.000 0.00 0.00 0.00 4.17
331 332 0.891449 TGTGTTATTGGGCGTGTGGG 60.891 55.000 0.00 0.00 0.00 4.61
332 333 1.974343 TGTTATTGGGCGTGTGGGC 60.974 57.895 0.00 0.00 41.35 5.36
333 334 2.748251 TTATTGGGCGTGTGGGCG 60.748 61.111 0.00 0.00 43.46 6.13
334 335 4.787286 TATTGGGCGTGTGGGCGG 62.787 66.667 0.00 0.00 43.46 6.13
349 350 4.323477 CGGGTTTCGCTCCCACCA 62.323 66.667 9.37 0.00 44.81 4.17
350 351 2.671963 GGGTTTCGCTCCCACCAC 60.672 66.667 4.87 0.00 44.05 4.16
351 352 2.112297 GGTTTCGCTCCCACCACA 59.888 61.111 0.00 0.00 0.00 4.17
352 353 2.258726 GGTTTCGCTCCCACCACAC 61.259 63.158 0.00 0.00 0.00 3.82
353 354 2.280524 TTTCGCTCCCACCACACG 60.281 61.111 0.00 0.00 0.00 4.49
354 355 3.096633 TTTCGCTCCCACCACACGT 62.097 57.895 0.00 0.00 0.00 4.49
355 356 3.800685 TTCGCTCCCACCACACGTG 62.801 63.158 15.48 15.48 42.62 4.49
356 357 4.602259 CGCTCCCACCACACGTGT 62.602 66.667 17.22 17.22 41.26 4.49
357 358 2.972505 GCTCCCACCACACGTGTG 60.973 66.667 36.13 36.13 45.23 3.82
366 367 3.932289 ACACGTGTGAGCGTTAGC 58.068 55.556 22.71 0.00 43.83 3.09
383 384 5.255596 CGTTAGCGTTGTCCTTGATTTATG 58.744 41.667 0.00 0.00 0.00 1.90
404 408 5.344743 TGGTACAGAAGGTGAGATCAATC 57.655 43.478 0.00 0.00 0.00 2.67
425 429 1.302033 CACTGCCACGAGCCTTCTT 60.302 57.895 0.00 0.00 42.71 2.52
530 534 3.250617 GGAAATATTCCCCCATGGCATT 58.749 45.455 6.09 0.00 44.30 3.56
568 572 4.508662 CAGAAACTAAAGAGGAGCCGAAT 58.491 43.478 0.00 0.00 0.00 3.34
570 574 4.223032 AGAAACTAAAGAGGAGCCGAATCA 59.777 41.667 0.00 0.00 0.00 2.57
593 597 3.242549 AGTAGTGGCCGCTACTAAAAC 57.757 47.619 43.70 26.99 46.84 2.43
615 619 0.179045 AATATTCTCAAGCGGCGCCT 60.179 50.000 30.40 14.31 0.00 5.52
619 623 4.093952 CTCAAGCGGCGCCTGTTG 62.094 66.667 30.40 25.37 0.00 3.33
645 654 2.193566 TTAACCCCATACCCCGATCA 57.806 50.000 0.00 0.00 0.00 2.92
664 673 7.651304 CCCGATCATATTGAGCATAGATACTTC 59.349 40.741 0.00 0.00 31.10 3.01
668 677 7.886338 TCATATTGAGCATAGATACTTCGTGT 58.114 34.615 0.00 0.00 0.00 4.49
774 783 4.534500 TGTTCCAGCCTATAACCTTCAGAA 59.466 41.667 0.00 0.00 0.00 3.02
775 784 5.013704 TGTTCCAGCCTATAACCTTCAGAAA 59.986 40.000 0.00 0.00 0.00 2.52
776 785 5.099042 TCCAGCCTATAACCTTCAGAAAC 57.901 43.478 0.00 0.00 0.00 2.78
777 786 4.080526 TCCAGCCTATAACCTTCAGAAACC 60.081 45.833 0.00 0.00 0.00 3.27
778 787 4.324254 CCAGCCTATAACCTTCAGAAACCA 60.324 45.833 0.00 0.00 0.00 3.67
779 788 4.878397 CAGCCTATAACCTTCAGAAACCAG 59.122 45.833 0.00 0.00 0.00 4.00
780 789 4.536489 AGCCTATAACCTTCAGAAACCAGT 59.464 41.667 0.00 0.00 0.00 4.00
781 790 5.014228 AGCCTATAACCTTCAGAAACCAGTT 59.986 40.000 0.00 0.00 0.00 3.16
782 791 5.710567 GCCTATAACCTTCAGAAACCAGTTT 59.289 40.000 0.00 0.00 35.14 2.66
783 792 6.127980 GCCTATAACCTTCAGAAACCAGTTTC 60.128 42.308 14.10 14.10 46.85 2.78
793 802 4.463515 GAAACCAGTTTCCGTCTACAAC 57.536 45.455 11.43 0.00 42.20 3.32
794 803 2.538512 ACCAGTTTCCGTCTACAACC 57.461 50.000 0.00 0.00 0.00 3.77
795 804 1.764134 ACCAGTTTCCGTCTACAACCA 59.236 47.619 0.00 0.00 0.00 3.67
796 805 2.370849 ACCAGTTTCCGTCTACAACCAT 59.629 45.455 0.00 0.00 0.00 3.55
797 806 3.579586 ACCAGTTTCCGTCTACAACCATA 59.420 43.478 0.00 0.00 0.00 2.74
798 807 4.181578 CCAGTTTCCGTCTACAACCATAG 58.818 47.826 0.00 0.00 0.00 2.23
799 808 4.181578 CAGTTTCCGTCTACAACCATAGG 58.818 47.826 0.00 0.00 0.00 2.57
800 809 3.197116 AGTTTCCGTCTACAACCATAGGG 59.803 47.826 0.00 0.00 41.29 3.53
821 830 1.558233 ACTAGGGTGGGAACGAGAAG 58.442 55.000 0.00 0.00 0.00 2.85
958 967 0.463654 ACTTGGACAGCAAACGAGCA 60.464 50.000 0.00 0.00 36.85 4.26
1093 1102 5.817816 ACCAGCTTTGATTTCTATTACCTCG 59.182 40.000 0.00 0.00 0.00 4.63
1141 1150 5.014858 AGATGCTTATTTCCTGCATATGGG 58.985 41.667 4.56 0.00 45.90 4.00
1142 1151 4.183223 TGCTTATTTCCTGCATATGGGT 57.817 40.909 4.56 0.00 0.00 4.51
1143 1152 4.545678 TGCTTATTTCCTGCATATGGGTT 58.454 39.130 4.56 0.00 0.00 4.11
1260 2171 7.828717 TGCATGAGATATCTTGTTTACCTTTCA 59.171 33.333 6.70 0.00 0.00 2.69
1381 2294 2.672651 CCATGCGTTGCAGTGGGA 60.673 61.111 10.49 0.00 43.65 4.37
1454 2367 1.160137 GCATCACTCCACTGAACCAC 58.840 55.000 0.00 0.00 0.00 4.16
1493 2414 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
1494 2415 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
1495 2416 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1496 2417 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
1644 2696 8.699283 AAAGAACTAATTCATGTAGACGGTAC 57.301 34.615 0.00 0.00 37.29 3.34
1689 2741 7.462590 AGGCCCATCTTAAGATTAATAAGACC 58.537 38.462 15.49 8.57 40.97 3.85
1782 2837 1.357761 TCCTTCCATTTGTTCCCCCTC 59.642 52.381 0.00 0.00 0.00 4.30
1810 2865 1.462616 TTATCCATGCACACACTGGC 58.537 50.000 0.00 0.00 0.00 4.85
1822 2877 1.741706 CACACTGGCAGCTATTCCTTG 59.258 52.381 15.89 5.12 0.00 3.61
1914 2969 8.696374 ACAGGATCGAAAAGATAGAATAGAACA 58.304 33.333 0.00 0.00 40.26 3.18
1983 3038 7.921214 CAGTAGTGGAATAGTGTATACCAACTG 59.079 40.741 0.00 0.00 35.03 3.16
2009 3064 8.030106 GCACCTATGGATGTAGAGATTACTTAC 58.970 40.741 0.00 0.00 0.00 2.34
2010 3065 9.303116 CACCTATGGATGTAGAGATTACTTACT 57.697 37.037 0.00 0.00 0.00 2.24
2011 3066 9.884814 ACCTATGGATGTAGAGATTACTTACTT 57.115 33.333 0.00 0.00 0.00 2.24
2054 3109 5.167121 GGACTCATCAGAATACATCATCCG 58.833 45.833 0.00 0.00 0.00 4.18
2087 3142 7.744087 TGCTTGTTCTTAAACACACTATCAT 57.256 32.000 0.00 0.00 44.90 2.45
2127 3182 5.823209 TGCATTCTGTGTCATTTAGATGG 57.177 39.130 0.00 0.00 33.93 3.51
2137 3192 7.563906 TGTGTCATTTAGATGGACATACATGA 58.436 34.615 0.00 0.00 33.93 3.07
2157 3212 3.199727 TGATCAGCCTAACACCATAGCAA 59.800 43.478 0.00 0.00 0.00 3.91
2237 3292 3.071023 CCAGTCTTCCACCACAGAAGTAA 59.929 47.826 0.00 0.00 41.27 2.24
2264 3319 9.635520 TTTCTTTCCTATAAGTACAGAAGAACG 57.364 33.333 0.00 0.00 0.00 3.95
2293 3348 9.590828 AGAGAATACTAAAATACTACTCCCTCC 57.409 37.037 0.00 0.00 0.00 4.30
2294 3349 9.364653 GAGAATACTAAAATACTACTCCCTCCA 57.635 37.037 0.00 0.00 0.00 3.86
2295 3350 9.900112 AGAATACTAAAATACTACTCCCTCCAT 57.100 33.333 0.00 0.00 0.00 3.41
2297 3352 6.997942 ACTAAAATACTACTCCCTCCATCC 57.002 41.667 0.00 0.00 0.00 3.51
2298 3353 5.845065 ACTAAAATACTACTCCCTCCATCCC 59.155 44.000 0.00 0.00 0.00 3.85
2299 3354 4.295905 AAATACTACTCCCTCCATCCCA 57.704 45.455 0.00 0.00 0.00 4.37
2300 3355 4.510303 AATACTACTCCCTCCATCCCAT 57.490 45.455 0.00 0.00 0.00 4.00
2301 3356 5.633473 AATACTACTCCCTCCATCCCATA 57.367 43.478 0.00 0.00 0.00 2.74
2302 3357 5.633473 ATACTACTCCCTCCATCCCATAA 57.367 43.478 0.00 0.00 0.00 1.90
2303 3358 4.510303 ACTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
2304 3359 5.633473 ACTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
2305 3360 6.185677 ACTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
2306 3361 7.312162 ACTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
2307 3362 7.729350 ACTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
2308 3363 7.846823 ACTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
2309 3364 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
2310 3365 6.674419 ACTCCCTCCATCCCATAATATAAGAC 59.326 42.308 0.00 0.00 0.00 3.01
2311 3366 5.970640 TCCCTCCATCCCATAATATAAGACC 59.029 44.000 0.00 0.00 0.00 3.85
2312 3367 5.163301 CCCTCCATCCCATAATATAAGACCG 60.163 48.000 0.00 0.00 0.00 4.79
2313 3368 5.425539 CCTCCATCCCATAATATAAGACCGT 59.574 44.000 0.00 0.00 0.00 4.83
2314 3369 6.070194 CCTCCATCCCATAATATAAGACCGTT 60.070 42.308 0.00 0.00 0.00 4.44
2315 3370 7.324388 TCCATCCCATAATATAAGACCGTTT 57.676 36.000 0.00 0.00 0.00 3.60
2316 3371 7.751646 TCCATCCCATAATATAAGACCGTTTT 58.248 34.615 0.00 0.00 0.00 2.43
2317 3372 8.221944 TCCATCCCATAATATAAGACCGTTTTT 58.778 33.333 0.00 0.00 0.00 1.94
2318 3373 8.296713 CCATCCCATAATATAAGACCGTTTTTG 58.703 37.037 0.00 0.00 0.00 2.44
2319 3374 9.062524 CATCCCATAATATAAGACCGTTTTTGA 57.937 33.333 0.00 0.00 0.00 2.69
2320 3375 8.441312 TCCCATAATATAAGACCGTTTTTGAC 57.559 34.615 0.00 0.00 0.00 3.18
2321 3376 8.047911 TCCCATAATATAAGACCGTTTTTGACA 58.952 33.333 0.00 0.00 0.00 3.58
2322 3377 8.126700 CCCATAATATAAGACCGTTTTTGACAC 58.873 37.037 0.00 0.00 0.00 3.67
2323 3378 8.889717 CCATAATATAAGACCGTTTTTGACACT 58.110 33.333 0.00 0.00 0.00 3.55
2327 3382 6.780706 ATAAGACCGTTTTTGACACTAGTG 57.219 37.500 21.44 21.44 0.00 2.74
2441 3498 7.201530 GGATGAACCATCAGTAAAACTCTAACG 60.202 40.741 8.91 0.00 42.13 3.18
2447 3504 5.710513 TCAGTAAAACTCTAACGTGGCTA 57.289 39.130 0.00 0.00 0.00 3.93
2455 3512 8.471361 AAAACTCTAACGTGGCTATAGTTAAC 57.529 34.615 0.84 0.00 31.07 2.01
2476 3533 5.931441 ACTTCAGCTTACAACATTCAGTC 57.069 39.130 0.00 0.00 0.00 3.51
2477 3534 5.368145 ACTTCAGCTTACAACATTCAGTCA 58.632 37.500 0.00 0.00 0.00 3.41
2478 3535 5.822519 ACTTCAGCTTACAACATTCAGTCAA 59.177 36.000 0.00 0.00 0.00 3.18
2479 3536 6.318648 ACTTCAGCTTACAACATTCAGTCAAA 59.681 34.615 0.00 0.00 0.00 2.69
2480 3537 6.882610 TCAGCTTACAACATTCAGTCAAAT 57.117 33.333 0.00 0.00 0.00 2.32
2482 3539 6.486320 TCAGCTTACAACATTCAGTCAAATGA 59.514 34.615 3.78 0.00 38.64 2.57
2483 3540 7.013178 TCAGCTTACAACATTCAGTCAAATGAA 59.987 33.333 3.78 0.00 43.04 2.57
2484 3541 7.648908 CAGCTTACAACATTCAGTCAAATGAAA 59.351 33.333 3.78 0.00 42.21 2.69
2485 3542 8.362639 AGCTTACAACATTCAGTCAAATGAAAT 58.637 29.630 3.78 0.00 42.21 2.17
2486 3543 9.624697 GCTTACAACATTCAGTCAAATGAAATA 57.375 29.630 3.78 0.00 42.21 1.40
2492 3739 8.048534 ACATTCAGTCAAATGAAATACTCCAG 57.951 34.615 3.78 0.00 42.21 3.86
2501 3748 4.591321 TGAAATACTCCAGGCATTCCTT 57.409 40.909 0.00 0.00 41.93 3.36
2514 3761 7.619302 TCCAGGCATTCCTTTTAATTGAGTAAT 59.381 33.333 0.00 0.00 41.93 1.89
2516 3763 9.090692 CAGGCATTCCTTTTAATTGAGTAATTG 57.909 33.333 0.00 0.00 41.93 2.32
2517 3764 8.815912 AGGCATTCCTTTTAATTGAGTAATTGT 58.184 29.630 0.00 0.00 40.66 2.71
2554 3801 6.908870 TTCTTCATAGCACATCACACATAC 57.091 37.500 0.00 0.00 0.00 2.39
2581 3828 1.815003 GGTGCCATGTTCTTCTTCAGG 59.185 52.381 0.00 0.00 0.00 3.86
2582 3829 2.508526 GTGCCATGTTCTTCTTCAGGT 58.491 47.619 0.00 0.00 0.00 4.00
2583 3830 2.485814 GTGCCATGTTCTTCTTCAGGTC 59.514 50.000 0.00 0.00 0.00 3.85
2584 3831 2.087646 GCCATGTTCTTCTTCAGGTCC 58.912 52.381 0.00 0.00 0.00 4.46
2585 3832 2.350522 CCATGTTCTTCTTCAGGTCCG 58.649 52.381 0.00 0.00 0.00 4.79
2586 3833 2.289694 CCATGTTCTTCTTCAGGTCCGT 60.290 50.000 0.00 0.00 0.00 4.69
2587 3834 2.814280 TGTTCTTCTTCAGGTCCGTC 57.186 50.000 0.00 0.00 0.00 4.79
2588 3835 2.036387 TGTTCTTCTTCAGGTCCGTCA 58.964 47.619 0.00 0.00 0.00 4.35
2589 3836 2.035961 TGTTCTTCTTCAGGTCCGTCAG 59.964 50.000 0.00 0.00 0.00 3.51
2590 3837 2.287977 TCTTCTTCAGGTCCGTCAGA 57.712 50.000 0.00 0.00 0.00 3.27
2591 3838 1.887198 TCTTCTTCAGGTCCGTCAGAC 59.113 52.381 0.00 0.00 45.51 3.51
2621 3868 3.277481 GACGGCGAAATAAAATACTGCG 58.723 45.455 16.62 0.00 0.00 5.18
2623 3870 2.285756 CGGCGAAATAAAATACTGCGGA 59.714 45.455 0.00 0.00 0.00 5.54
2651 3898 0.038166 TCAACCCACCTCCAATCTGC 59.962 55.000 0.00 0.00 0.00 4.26
2664 3911 2.549754 CCAATCTGCACGACTGACTTTT 59.450 45.455 0.00 0.00 0.00 2.27
2677 3924 5.107298 CGACTGACTTTTGACAAGATCCTTC 60.107 44.000 0.00 0.00 0.00 3.46
2680 3927 5.928976 TGACTTTTGACAAGATCCTTCTGA 58.071 37.500 0.00 0.00 30.72 3.27
2682 3929 5.934781 ACTTTTGACAAGATCCTTCTGAGT 58.065 37.500 0.00 0.00 30.72 3.41
2692 3939 1.351350 TCCTTCTGAGTCAGAGACCGA 59.649 52.381 21.64 13.05 41.75 4.69
2700 3947 0.954449 GTCAGAGACCGACGGTGAGA 60.954 60.000 27.26 13.35 35.25 3.27
2703 3950 0.597072 AGAGACCGACGGTGAGAAAC 59.403 55.000 27.26 8.81 35.25 2.78
2704 3951 0.728466 GAGACCGACGGTGAGAAACG 60.728 60.000 27.26 0.00 35.25 3.60
2708 3955 1.577922 CGACGGTGAGAAACGGAGA 59.422 57.895 0.00 0.00 33.48 3.71
2710 3957 0.733223 GACGGTGAGAAACGGAGAGC 60.733 60.000 0.00 0.00 33.48 4.09
2718 3965 1.827399 GAAACGGAGAGCTGGTGGGA 61.827 60.000 0.00 0.00 0.00 4.37
2735 3982 2.756760 TGGGAGTGTATACGAGGTTCAC 59.243 50.000 0.00 0.00 0.00 3.18
2751 3998 3.053619 GGTTCACCAGATAGTTTGGGGAT 60.054 47.826 0.00 0.00 46.98 3.85
2770 4017 4.202461 GGGATGAGGGCTGAATTATACACA 60.202 45.833 0.00 0.00 0.00 3.72
2771 4018 5.515534 GGGATGAGGGCTGAATTATACACAT 60.516 44.000 0.00 0.00 0.00 3.21
2772 4019 5.645497 GGATGAGGGCTGAATTATACACATC 59.355 44.000 0.00 0.00 0.00 3.06
2773 4020 4.631131 TGAGGGCTGAATTATACACATCG 58.369 43.478 0.00 0.00 0.00 3.84
2774 4021 4.343814 TGAGGGCTGAATTATACACATCGA 59.656 41.667 0.00 0.00 0.00 3.59
2775 4022 5.163353 TGAGGGCTGAATTATACACATCGAA 60.163 40.000 0.00 0.00 0.00 3.71
2776 4023 5.869579 AGGGCTGAATTATACACATCGAAT 58.130 37.500 0.00 0.00 0.00 3.34
2777 4024 7.004555 AGGGCTGAATTATACACATCGAATA 57.995 36.000 0.00 0.00 0.00 1.75
2778 4025 7.450074 AGGGCTGAATTATACACATCGAATAA 58.550 34.615 0.00 0.00 0.00 1.40
2779 4026 8.103305 AGGGCTGAATTATACACATCGAATAAT 58.897 33.333 0.00 0.00 0.00 1.28
2780 4027 9.378551 GGGCTGAATTATACACATCGAATAATA 57.621 33.333 0.00 0.00 0.00 0.98
2825 4072 4.616181 ACAGTTGTGTGCTTGTTAAGAC 57.384 40.909 0.00 0.00 34.75 3.01
2852 4099 6.094186 GGGTTTAGACATCCAGAACAAGAATC 59.906 42.308 0.00 0.00 0.00 2.52
2924 4171 3.973657 CAGACTTGCTGCAAAGACAATT 58.026 40.909 16.74 0.00 37.90 2.32
2962 4209 4.795278 GCGCCTAAAAATCTGATTTGACAG 59.205 41.667 15.80 12.30 39.02 3.51
3096 4351 5.391312 AATCTTTGCCACACCTAAACATC 57.609 39.130 0.00 0.00 0.00 3.06
3136 4391 4.345257 AGAGGTGTAAGACAGAGCAGAAAA 59.655 41.667 0.00 0.00 0.00 2.29
3144 4399 2.599082 GACAGAGCAGAAAATCGTACGG 59.401 50.000 16.52 0.00 0.00 4.02
3183 4438 2.951745 CGCCTGAGCTCGCGTTAG 60.952 66.667 22.87 9.07 43.35 2.34
3184 4439 2.583593 GCCTGAGCTCGCGTTAGG 60.584 66.667 9.64 10.87 35.50 2.69
3185 4440 3.064987 GCCTGAGCTCGCGTTAGGA 62.065 63.158 18.71 0.00 35.50 2.94
3186 4441 1.226717 CCTGAGCTCGCGTTAGGAC 60.227 63.158 10.83 0.00 0.00 3.85
3335 4615 2.282462 GGTGCAGGTGGGTTGGAG 60.282 66.667 0.00 0.00 0.00 3.86
3336 4616 2.515901 GTGCAGGTGGGTTGGAGT 59.484 61.111 0.00 0.00 0.00 3.85
3337 4617 1.152756 GTGCAGGTGGGTTGGAGTT 60.153 57.895 0.00 0.00 0.00 3.01
3338 4618 1.152777 TGCAGGTGGGTTGGAGTTG 60.153 57.895 0.00 0.00 0.00 3.16
3339 4619 1.903404 GCAGGTGGGTTGGAGTTGG 60.903 63.158 0.00 0.00 0.00 3.77
3340 4620 1.843421 CAGGTGGGTTGGAGTTGGA 59.157 57.895 0.00 0.00 0.00 3.53
3433 4737 2.291043 GGGAAGAGGTTCGGCAGGA 61.291 63.158 0.00 0.00 32.92 3.86
3607 4913 4.379603 CGTATCTCAATCCGGTATCTCACC 60.380 50.000 0.00 0.00 44.75 4.02
3620 4930 6.127423 CCGGTATCTCACCCAGGTTATATTAG 60.127 46.154 0.00 0.00 45.52 1.73
3648 4964 3.761218 ACTCGTATCCTAGATGCTCATGG 59.239 47.826 0.00 0.00 0.00 3.66
3740 5056 1.883084 CCGGCGGAGGATTTCTTCG 60.883 63.158 24.41 0.00 46.96 3.79
3927 5244 0.680280 AGCAGCTGGAGCCAATTGAG 60.680 55.000 17.12 0.00 43.38 3.02
4287 5604 2.753029 GACTGTCCCAAGCTGCCT 59.247 61.111 0.00 0.00 0.00 4.75
4326 5643 0.103876 AGGTCCTCTTCCACCCCTTT 60.104 55.000 0.00 0.00 32.45 3.11
4374 5691 1.179152 CTGCCAAGATCATGTTGCCA 58.821 50.000 0.00 0.00 0.00 4.92
4673 5999 9.938670 TTCTTTTATCTCGATTCGTTTTGAAAA 57.061 25.926 5.89 7.07 40.71 2.29
4674 6000 9.938670 TCTTTTATCTCGATTCGTTTTGAAAAA 57.061 25.926 5.89 6.37 40.71 1.94
4736 6062 7.592533 GGTTTCAAATTTAGTTTCCCGTAAGTC 59.407 37.037 0.00 0.00 0.00 3.01
4779 6105 8.230486 AGAAGTTATCTATTTGTTTGTGCTTCG 58.770 33.333 0.00 0.00 36.32 3.79
4811 6137 9.788960 AACTTTTGTTCACTCTGTATTTTCTTC 57.211 29.630 0.00 0.00 38.45 2.87
4942 7330 7.153217 ACTCCTAAATAAATGAAAACCCACG 57.847 36.000 0.00 0.00 0.00 4.94
5034 7427 4.368543 GGCCGTCGTCCCTTTCGT 62.369 66.667 0.00 0.00 0.00 3.85
5036 7429 2.646719 CCGTCGTCCCTTTCGTCA 59.353 61.111 0.00 0.00 0.00 4.35
5076 7469 1.980052 CCCGCTACCTCCAAAGACA 59.020 57.895 0.00 0.00 0.00 3.41
5085 7478 0.397941 CTCCAAAGACACTGCCTCCA 59.602 55.000 0.00 0.00 0.00 3.86
5188 7582 3.454371 TCTTTCGAGTAATAGGCCAGC 57.546 47.619 5.01 0.00 0.00 4.85
5201 7595 0.328258 GGCCAGCCCTAACAAGAGAA 59.672 55.000 0.00 0.00 0.00 2.87
5214 7608 7.301054 CCTAACAAGAGAAAGTGCAAATACTG 58.699 38.462 0.00 0.00 0.00 2.74
5234 7628 5.189928 ACTGTATCAACAACAACCACTTCA 58.810 37.500 0.00 0.00 34.49 3.02
5284 7678 4.786454 TGGTTCTATAGGCCTACCAAACTT 59.214 41.667 20.01 3.55 36.03 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.784037 TGCCATGATATGTTTCAGCTATTTTT 58.216 30.769 0.00 0.00 0.00 1.94
50 51 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
51 52 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
52 53 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
53 54 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
54 55 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
55 56 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
56 57 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
57 58 6.127814 ACTGAAGTTGCCATGATATGTTTCAG 60.128 38.462 16.88 16.88 42.68 3.02
58 59 5.711506 ACTGAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
59 60 6.032094 CACTGAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
60 61 5.477984 ACACTGAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
61 62 5.012239 ACACTGAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
62 63 4.592942 ACACTGAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
63 64 6.682423 TTACACTGAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
64 65 6.658816 TGTTTACACTGAAGTTGCCATGATAT 59.341 34.615 0.00 0.00 0.00 1.63
65 66 6.000840 TGTTTACACTGAAGTTGCCATGATA 58.999 36.000 0.00 0.00 0.00 2.15
66 67 4.826733 TGTTTACACTGAAGTTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
67 68 4.036262 GTGTTTACACTGAAGTTGCCATGA 59.964 41.667 5.78 0.00 43.25 3.07
68 69 4.290155 GTGTTTACACTGAAGTTGCCATG 58.710 43.478 5.78 0.00 43.25 3.66
69 70 3.317993 GGTGTTTACACTGAAGTTGCCAT 59.682 43.478 12.32 0.00 45.73 4.40
70 71 2.685897 GGTGTTTACACTGAAGTTGCCA 59.314 45.455 12.32 0.00 45.73 4.92
71 72 2.685897 TGGTGTTTACACTGAAGTTGCC 59.314 45.455 12.32 0.00 45.73 4.52
72 73 4.290155 CATGGTGTTTACACTGAAGTTGC 58.710 43.478 12.32 0.00 45.73 4.17
73 74 4.792704 GCCATGGTGTTTACACTGAAGTTG 60.793 45.833 14.67 2.96 45.73 3.16
74 75 3.317993 GCCATGGTGTTTACACTGAAGTT 59.682 43.478 14.67 0.00 45.73 2.66
75 76 2.884639 GCCATGGTGTTTACACTGAAGT 59.115 45.455 14.67 0.00 45.73 3.01
76 77 2.884012 TGCCATGGTGTTTACACTGAAG 59.116 45.455 14.67 2.17 45.73 3.02
77 78 2.937519 TGCCATGGTGTTTACACTGAA 58.062 42.857 14.67 0.54 45.73 3.02
78 79 2.647683 TGCCATGGTGTTTACACTGA 57.352 45.000 14.67 1.16 45.73 3.41
79 80 3.940209 ATTGCCATGGTGTTTACACTG 57.060 42.857 14.67 4.48 45.73 3.66
80 81 3.057596 CGAATTGCCATGGTGTTTACACT 60.058 43.478 14.67 0.00 45.73 3.55
81 82 3.241701 CGAATTGCCATGGTGTTTACAC 58.758 45.455 14.67 4.43 45.72 2.90
82 83 2.887783 ACGAATTGCCATGGTGTTTACA 59.112 40.909 14.67 0.00 0.00 2.41
83 84 3.241701 CACGAATTGCCATGGTGTTTAC 58.758 45.455 14.67 0.00 0.00 2.01
84 85 2.887783 ACACGAATTGCCATGGTGTTTA 59.112 40.909 14.67 0.00 38.59 2.01
85 86 1.686052 ACACGAATTGCCATGGTGTTT 59.314 42.857 14.67 4.22 38.59 2.83
86 87 1.000385 CACACGAATTGCCATGGTGTT 60.000 47.619 14.67 5.86 39.62 3.32
87 88 0.597568 CACACGAATTGCCATGGTGT 59.402 50.000 14.67 4.74 42.12 4.16
88 89 0.733566 GCACACGAATTGCCATGGTG 60.734 55.000 14.67 4.03 33.58 4.17
89 90 1.177895 TGCACACGAATTGCCATGGT 61.178 50.000 14.67 0.00 39.39 3.55
90 91 0.038435 TTGCACACGAATTGCCATGG 60.038 50.000 7.63 7.63 39.39 3.66
91 92 1.999048 ATTGCACACGAATTGCCATG 58.001 45.000 0.00 0.00 39.39 3.66
92 93 3.865011 TTATTGCACACGAATTGCCAT 57.135 38.095 0.00 0.00 39.39 4.40
93 94 3.243535 TGTTTATTGCACACGAATTGCCA 60.244 39.130 0.00 0.00 39.39 4.92
94 95 3.312828 TGTTTATTGCACACGAATTGCC 58.687 40.909 0.00 0.00 39.39 4.52
95 96 4.201608 CCATGTTTATTGCACACGAATTGC 60.202 41.667 0.00 0.00 40.63 3.56
96 97 4.201608 GCCATGTTTATTGCACACGAATTG 60.202 41.667 0.00 0.00 0.00 2.32
97 98 3.925913 GCCATGTTTATTGCACACGAATT 59.074 39.130 0.00 0.00 0.00 2.17
98 99 3.056962 TGCCATGTTTATTGCACACGAAT 60.057 39.130 0.00 0.00 30.76 3.34
99 100 2.294512 TGCCATGTTTATTGCACACGAA 59.705 40.909 0.00 0.00 30.76 3.85
100 101 1.882623 TGCCATGTTTATTGCACACGA 59.117 42.857 0.00 0.00 30.76 4.35
101 102 2.344504 TGCCATGTTTATTGCACACG 57.655 45.000 0.00 0.00 30.76 4.49
102 103 3.652274 AGTTGCCATGTTTATTGCACAC 58.348 40.909 0.00 0.00 34.99 3.82
103 104 4.333913 AAGTTGCCATGTTTATTGCACA 57.666 36.364 0.00 0.00 34.99 4.57
104 105 5.671742 AAAAGTTGCCATGTTTATTGCAC 57.328 34.783 0.00 0.00 34.99 4.57
105 106 6.203723 GGTTAAAAGTTGCCATGTTTATTGCA 59.796 34.615 0.00 0.00 33.58 4.08
106 107 6.348132 GGGTTAAAAGTTGCCATGTTTATTGC 60.348 38.462 0.00 0.00 0.00 3.56
107 108 6.148645 GGGGTTAAAAGTTGCCATGTTTATTG 59.851 38.462 0.00 0.00 0.00 1.90
108 109 6.234920 GGGGTTAAAAGTTGCCATGTTTATT 58.765 36.000 0.00 0.00 0.00 1.40
109 110 5.280266 GGGGGTTAAAAGTTGCCATGTTTAT 60.280 40.000 0.00 0.00 0.00 1.40
110 111 4.040584 GGGGGTTAAAAGTTGCCATGTTTA 59.959 41.667 0.00 0.00 0.00 2.01
111 112 3.181449 GGGGGTTAAAAGTTGCCATGTTT 60.181 43.478 0.00 0.00 0.00 2.83
112 113 2.370519 GGGGGTTAAAAGTTGCCATGTT 59.629 45.455 0.00 0.00 0.00 2.71
113 114 1.974957 GGGGGTTAAAAGTTGCCATGT 59.025 47.619 0.00 0.00 0.00 3.21
114 115 1.974236 TGGGGGTTAAAAGTTGCCATG 59.026 47.619 0.00 0.00 0.00 3.66
115 116 2.407340 TGGGGGTTAAAAGTTGCCAT 57.593 45.000 0.00 0.00 0.00 4.40
116 117 2.176247 TTGGGGGTTAAAAGTTGCCA 57.824 45.000 0.00 0.00 0.00 4.92
117 118 3.562343 TTTTGGGGGTTAAAAGTTGCC 57.438 42.857 0.00 0.00 0.00 4.52
182 183 2.098607 ACCATTAAATCTCTCGCGACGA 59.901 45.455 3.71 5.08 0.00 4.20
183 184 2.216488 CACCATTAAATCTCTCGCGACG 59.784 50.000 3.71 1.32 0.00 5.12
184 185 3.444916 TCACCATTAAATCTCTCGCGAC 58.555 45.455 3.71 0.00 0.00 5.19
185 186 3.793797 TCACCATTAAATCTCTCGCGA 57.206 42.857 9.26 9.26 0.00 5.87
186 187 4.857871 TTTCACCATTAAATCTCTCGCG 57.142 40.909 0.00 0.00 0.00 5.87
187 188 5.938322 TGTTTTCACCATTAAATCTCTCGC 58.062 37.500 0.00 0.00 0.00 5.03
188 189 7.364522 TCTGTTTTCACCATTAAATCTCTCG 57.635 36.000 0.00 0.00 0.00 4.04
189 190 9.171877 AGATCTGTTTTCACCATTAAATCTCTC 57.828 33.333 0.00 0.00 0.00 3.20
190 191 9.525826 AAGATCTGTTTTCACCATTAAATCTCT 57.474 29.630 0.00 0.00 0.00 3.10
191 192 9.780413 GAAGATCTGTTTTCACCATTAAATCTC 57.220 33.333 0.00 0.00 0.00 2.75
192 193 9.300681 TGAAGATCTGTTTTCACCATTAAATCT 57.699 29.630 0.00 0.00 0.00 2.40
193 194 9.912634 TTGAAGATCTGTTTTCACCATTAAATC 57.087 29.630 0.00 0.00 33.36 2.17
196 197 9.695526 CAATTGAAGATCTGTTTTCACCATTAA 57.304 29.630 0.00 0.00 33.36 1.40
197 198 8.306038 CCAATTGAAGATCTGTTTTCACCATTA 58.694 33.333 7.12 0.00 33.36 1.90
198 199 7.015487 TCCAATTGAAGATCTGTTTTCACCATT 59.985 33.333 7.12 0.00 33.36 3.16
199 200 6.494491 TCCAATTGAAGATCTGTTTTCACCAT 59.506 34.615 7.12 0.00 33.36 3.55
200 201 5.832595 TCCAATTGAAGATCTGTTTTCACCA 59.167 36.000 7.12 0.00 33.36 4.17
201 202 6.331369 TCCAATTGAAGATCTGTTTTCACC 57.669 37.500 7.12 0.00 33.36 4.02
202 203 8.822652 AAATCCAATTGAAGATCTGTTTTCAC 57.177 30.769 7.12 0.00 33.36 3.18
203 204 9.835389 AAAAATCCAATTGAAGATCTGTTTTCA 57.165 25.926 7.12 0.00 0.00 2.69
253 254 9.889128 TGAGAATCTTTTTGGATTTTCAGTTTT 57.111 25.926 6.41 0.00 39.91 2.43
254 255 9.317936 GTGAGAATCTTTTTGGATTTTCAGTTT 57.682 29.630 9.58 0.00 42.97 2.66
255 256 8.477256 TGTGAGAATCTTTTTGGATTTTCAGTT 58.523 29.630 9.58 0.00 42.97 3.16
256 257 8.010733 TGTGAGAATCTTTTTGGATTTTCAGT 57.989 30.769 9.58 0.00 42.97 3.41
257 258 8.922676 CATGTGAGAATCTTTTTGGATTTTCAG 58.077 33.333 9.58 0.00 42.97 3.02
258 259 7.385752 GCATGTGAGAATCTTTTTGGATTTTCA 59.614 33.333 6.41 6.41 41.38 2.69
259 260 7.385752 TGCATGTGAGAATCTTTTTGGATTTTC 59.614 33.333 0.00 0.00 37.35 2.29
260 261 7.218614 TGCATGTGAGAATCTTTTTGGATTTT 58.781 30.769 0.00 0.00 36.24 1.82
261 262 6.761312 TGCATGTGAGAATCTTTTTGGATTT 58.239 32.000 0.00 0.00 36.24 2.17
262 263 6.349243 TGCATGTGAGAATCTTTTTGGATT 57.651 33.333 0.00 0.00 38.47 3.01
263 264 5.988310 TGCATGTGAGAATCTTTTTGGAT 57.012 34.783 0.00 0.00 34.92 3.41
264 265 5.716094 CATGCATGTGAGAATCTTTTTGGA 58.284 37.500 18.91 0.00 34.92 3.53
265 266 4.328983 GCATGCATGTGAGAATCTTTTTGG 59.671 41.667 26.79 0.00 34.92 3.28
266 267 4.926832 TGCATGCATGTGAGAATCTTTTTG 59.073 37.500 26.79 0.00 34.92 2.44
267 268 5.142061 TGCATGCATGTGAGAATCTTTTT 57.858 34.783 26.79 0.00 34.92 1.94
268 269 4.794278 TGCATGCATGTGAGAATCTTTT 57.206 36.364 26.79 0.00 34.92 2.27
269 270 4.682787 CATGCATGCATGTGAGAATCTTT 58.317 39.130 40.30 13.48 46.20 2.52
270 271 4.307443 CATGCATGCATGTGAGAATCTT 57.693 40.909 40.30 13.68 46.20 2.40
271 272 3.990318 CATGCATGCATGTGAGAATCT 57.010 42.857 40.30 14.19 46.20 2.40
284 285 2.098871 CACGTCACCGCATGCATG 59.901 61.111 22.70 22.70 37.70 4.06
285 286 3.126879 CCACGTCACCGCATGCAT 61.127 61.111 19.57 1.32 37.70 3.96
293 294 4.664677 AGACTGCGCCACGTCACC 62.665 66.667 19.29 0.00 32.68 4.02
294 295 3.406361 CAGACTGCGCCACGTCAC 61.406 66.667 19.29 0.36 32.68 3.67
295 296 3.911698 ACAGACTGCGCCACGTCA 61.912 61.111 19.29 0.00 32.68 4.35
296 297 3.406361 CACAGACTGCGCCACGTC 61.406 66.667 4.18 9.28 0.00 4.34
297 298 4.221422 ACACAGACTGCGCCACGT 62.221 61.111 4.18 0.00 0.00 4.49
298 299 3.705638 CACACAGACTGCGCCACG 61.706 66.667 4.18 0.00 0.00 4.94
299 300 0.878523 TAACACACAGACTGCGCCAC 60.879 55.000 4.18 0.00 0.00 5.01
300 301 0.034756 ATAACACACAGACTGCGCCA 59.965 50.000 4.18 0.00 0.00 5.69
301 302 1.135972 CAATAACACACAGACTGCGCC 60.136 52.381 4.18 0.00 0.00 6.53
302 303 1.135972 CCAATAACACACAGACTGCGC 60.136 52.381 0.00 0.00 0.00 6.09
303 304 1.464608 CCCAATAACACACAGACTGCG 59.535 52.381 1.25 0.00 0.00 5.18
304 305 1.200020 GCCCAATAACACACAGACTGC 59.800 52.381 1.25 0.00 0.00 4.40
305 306 1.464608 CGCCCAATAACACACAGACTG 59.535 52.381 0.00 0.00 0.00 3.51
306 307 1.071699 ACGCCCAATAACACACAGACT 59.928 47.619 0.00 0.00 0.00 3.24
307 308 1.196808 CACGCCCAATAACACACAGAC 59.803 52.381 0.00 0.00 0.00 3.51
308 309 1.202710 ACACGCCCAATAACACACAGA 60.203 47.619 0.00 0.00 0.00 3.41
309 310 1.069296 CACACGCCCAATAACACACAG 60.069 52.381 0.00 0.00 0.00 3.66
310 311 0.947960 CACACGCCCAATAACACACA 59.052 50.000 0.00 0.00 0.00 3.72
311 312 0.239879 CCACACGCCCAATAACACAC 59.760 55.000 0.00 0.00 0.00 3.82
312 313 0.891449 CCCACACGCCCAATAACACA 60.891 55.000 0.00 0.00 0.00 3.72
313 314 1.880186 CCCACACGCCCAATAACAC 59.120 57.895 0.00 0.00 0.00 3.32
314 315 1.974343 GCCCACACGCCCAATAACA 60.974 57.895 0.00 0.00 0.00 2.41
315 316 2.882132 GCCCACACGCCCAATAAC 59.118 61.111 0.00 0.00 0.00 1.89
316 317 2.748251 CGCCCACACGCCCAATAA 60.748 61.111 0.00 0.00 0.00 1.40
317 318 4.787286 CCGCCCACACGCCCAATA 62.787 66.667 0.00 0.00 0.00 1.90
333 334 2.671963 GTGGTGGGAGCGAAACCC 60.672 66.667 0.00 0.00 46.87 4.11
334 335 2.112297 TGTGGTGGGAGCGAAACC 59.888 61.111 0.00 0.00 34.38 3.27
335 336 2.604174 CGTGTGGTGGGAGCGAAAC 61.604 63.158 0.00 0.00 0.00 2.78
336 337 2.280524 CGTGTGGTGGGAGCGAAA 60.281 61.111 0.00 0.00 0.00 3.46
337 338 3.542676 ACGTGTGGTGGGAGCGAA 61.543 61.111 0.00 0.00 0.00 4.70
338 339 4.293648 CACGTGTGGTGGGAGCGA 62.294 66.667 7.58 0.00 43.16 4.93
352 353 1.127817 CAACGCTAACGCTCACACG 59.872 57.895 0.00 0.00 45.53 4.49
353 354 0.161024 GACAACGCTAACGCTCACAC 59.839 55.000 0.00 0.00 45.53 3.82
354 355 0.942410 GGACAACGCTAACGCTCACA 60.942 55.000 0.00 0.00 45.53 3.58
355 356 0.666577 AGGACAACGCTAACGCTCAC 60.667 55.000 0.00 0.00 45.53 3.51
356 357 0.032952 AAGGACAACGCTAACGCTCA 59.967 50.000 0.00 0.00 45.53 4.26
357 358 0.438830 CAAGGACAACGCTAACGCTC 59.561 55.000 0.00 0.00 45.53 5.03
358 359 0.032952 TCAAGGACAACGCTAACGCT 59.967 50.000 0.00 0.00 45.53 5.07
359 360 1.076332 ATCAAGGACAACGCTAACGC 58.924 50.000 0.00 0.00 45.53 4.84
361 362 5.123344 ACCATAAATCAAGGACAACGCTAAC 59.877 40.000 0.00 0.00 0.00 2.34
362 363 5.250200 ACCATAAATCAAGGACAACGCTAA 58.750 37.500 0.00 0.00 0.00 3.09
363 364 4.839121 ACCATAAATCAAGGACAACGCTA 58.161 39.130 0.00 0.00 0.00 4.26
364 365 3.686016 ACCATAAATCAAGGACAACGCT 58.314 40.909 0.00 0.00 0.00 5.07
365 366 4.393680 TGTACCATAAATCAAGGACAACGC 59.606 41.667 0.00 0.00 0.00 4.84
366 367 5.872617 TCTGTACCATAAATCAAGGACAACG 59.127 40.000 0.00 0.00 0.00 4.10
367 368 7.148239 CCTTCTGTACCATAAATCAAGGACAAC 60.148 40.741 0.00 0.00 32.37 3.32
372 373 6.414732 TCACCTTCTGTACCATAAATCAAGG 58.585 40.000 0.00 0.00 36.10 3.61
373 374 7.331026 TCTCACCTTCTGTACCATAAATCAAG 58.669 38.462 0.00 0.00 0.00 3.02
383 384 5.606348 AGATTGATCTCACCTTCTGTACC 57.394 43.478 0.00 0.00 29.30 3.34
402 406 2.581354 GCTCGTGGCAGTGGAGAT 59.419 61.111 12.74 0.00 41.35 2.75
404 408 3.245668 AAGGCTCGTGGCAGTGGAG 62.246 63.158 13.78 5.93 44.01 3.86
425 429 6.262273 ACGAGGCTAAATTTTCTTGTCAAAGA 59.738 34.615 0.00 0.00 40.76 2.52
520 524 3.244630 CCATATTTTGGGAATGCCATGGG 60.245 47.826 15.13 0.00 42.33 4.00
568 572 0.815734 GTAGCGGCCACTACTTCTGA 59.184 55.000 21.37 0.00 39.57 3.27
593 597 0.508641 CGCCGCTTGAGAATATTCCG 59.491 55.000 11.92 7.80 0.00 4.30
645 654 8.982685 CAAACACGAAGTATCTATGCTCAATAT 58.017 33.333 0.00 0.00 41.61 1.28
774 783 2.171027 TGGTTGTAGACGGAAACTGGTT 59.829 45.455 0.00 0.00 0.00 3.67
775 784 1.764134 TGGTTGTAGACGGAAACTGGT 59.236 47.619 0.00 0.00 0.00 4.00
776 785 2.536761 TGGTTGTAGACGGAAACTGG 57.463 50.000 0.00 0.00 0.00 4.00
777 786 4.181578 CCTATGGTTGTAGACGGAAACTG 58.818 47.826 0.00 0.00 0.00 3.16
778 787 3.197116 CCCTATGGTTGTAGACGGAAACT 59.803 47.826 0.00 0.00 0.00 2.66
779 788 3.196254 TCCCTATGGTTGTAGACGGAAAC 59.804 47.826 0.00 0.00 0.00 2.78
780 789 3.443052 TCCCTATGGTTGTAGACGGAAA 58.557 45.455 0.00 0.00 0.00 3.13
781 790 3.104519 TCCCTATGGTTGTAGACGGAA 57.895 47.619 0.00 0.00 0.00 4.30
782 791 2.762327 GTTCCCTATGGTTGTAGACGGA 59.238 50.000 0.00 0.00 0.00 4.69
783 792 2.764572 AGTTCCCTATGGTTGTAGACGG 59.235 50.000 0.00 0.00 0.00 4.79
784 793 4.037684 CCTAGTTCCCTATGGTTGTAGACG 59.962 50.000 0.00 0.00 0.00 4.18
785 794 4.344390 CCCTAGTTCCCTATGGTTGTAGAC 59.656 50.000 0.00 0.00 0.00 2.59
786 795 4.015918 ACCCTAGTTCCCTATGGTTGTAGA 60.016 45.833 0.00 0.00 38.58 2.59
787 796 4.101119 CACCCTAGTTCCCTATGGTTGTAG 59.899 50.000 0.00 0.00 39.38 2.74
788 797 4.035112 CACCCTAGTTCCCTATGGTTGTA 58.965 47.826 0.00 0.00 39.38 2.41
789 798 2.844348 CACCCTAGTTCCCTATGGTTGT 59.156 50.000 0.00 0.00 39.38 3.32
790 799 2.172717 CCACCCTAGTTCCCTATGGTTG 59.827 54.545 0.00 0.00 39.38 3.77
791 800 2.488836 CCACCCTAGTTCCCTATGGTT 58.511 52.381 0.00 0.00 39.38 3.67
792 801 1.345112 CCCACCCTAGTTCCCTATGGT 60.345 57.143 0.00 0.00 41.33 3.55
793 802 1.061657 TCCCACCCTAGTTCCCTATGG 60.062 57.143 0.00 0.00 35.64 2.74
794 803 2.438392 GTTCCCACCCTAGTTCCCTATG 59.562 54.545 0.00 0.00 0.00 2.23
795 804 2.772930 GTTCCCACCCTAGTTCCCTAT 58.227 52.381 0.00 0.00 0.00 2.57
796 805 1.620524 CGTTCCCACCCTAGTTCCCTA 60.621 57.143 0.00 0.00 0.00 3.53
797 806 0.908180 CGTTCCCACCCTAGTTCCCT 60.908 60.000 0.00 0.00 0.00 4.20
798 807 0.906282 TCGTTCCCACCCTAGTTCCC 60.906 60.000 0.00 0.00 0.00 3.97
799 808 0.535797 CTCGTTCCCACCCTAGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
800 809 1.553706 TCTCGTTCCCACCCTAGTTC 58.446 55.000 0.00 0.00 0.00 3.01
821 830 0.179097 GACCGAGATCAGGGTTGAGC 60.179 60.000 8.86 0.00 40.01 4.26
1093 1102 4.579454 TGCTGTATCGTACCATTAGGAC 57.421 45.455 0.00 0.00 38.69 3.85
1200 1308 7.821359 AGCTCTTGTGCCATGTATTATGTATAG 59.179 37.037 0.00 0.00 0.00 1.31
1415 2328 2.420642 CATCTATGGAGGCGATGTTGG 58.579 52.381 0.00 0.00 32.07 3.77
1454 2367 4.712337 AGGGAGTAGAACAGTGGTATTCAG 59.288 45.833 0.00 0.00 0.00 3.02
1499 2420 5.246656 TCCCTCCGTCTTATAGTGACAAAAA 59.753 40.000 8.15 0.00 34.37 1.94
1500 2421 4.773674 TCCCTCCGTCTTATAGTGACAAAA 59.226 41.667 8.15 0.00 34.37 2.44
1501 2422 4.346730 TCCCTCCGTCTTATAGTGACAAA 58.653 43.478 8.15 0.00 34.37 2.83
1502 2423 3.952323 CTCCCTCCGTCTTATAGTGACAA 59.048 47.826 8.15 0.00 34.37 3.18
1503 2424 3.053842 ACTCCCTCCGTCTTATAGTGACA 60.054 47.826 8.15 0.00 34.37 3.58
1504 2425 3.553904 ACTCCCTCCGTCTTATAGTGAC 58.446 50.000 0.00 0.00 0.00 3.67
1505 2426 3.947612 ACTCCCTCCGTCTTATAGTGA 57.052 47.619 0.00 0.00 0.00 3.41
1782 2837 4.701651 TGTGTGCATGGATAAAGGAAGAAG 59.298 41.667 0.00 0.00 0.00 2.85
1822 2877 3.217626 CATCCTCTCCATTGCCTTAACC 58.782 50.000 0.00 0.00 0.00 2.85
1908 2963 7.318141 AGACTTTTTATTCCGTCGATGTTCTA 58.682 34.615 3.52 0.00 0.00 2.10
1914 2969 6.796705 ACAAAGACTTTTTATTCCGTCGAT 57.203 33.333 0.00 0.00 0.00 3.59
1983 3038 6.597832 AGTAATCTCTACATCCATAGGTGC 57.402 41.667 0.00 0.00 0.00 5.01
2009 3064 9.480053 AGTCCAAATTGAATTCAACAATACAAG 57.520 29.630 22.71 7.17 38.86 3.16
2010 3065 9.474920 GAGTCCAAATTGAATTCAACAATACAA 57.525 29.630 22.71 0.00 38.86 2.41
2011 3066 8.637099 TGAGTCCAAATTGAATTCAACAATACA 58.363 29.630 22.71 12.30 38.86 2.29
2054 3109 4.143052 GTTTAAGAACAAGCATGCCAATGC 60.143 41.667 15.66 2.45 45.58 3.56
2087 3142 1.592081 GCATGTTTTGTTGAAGCGCAA 59.408 42.857 11.47 0.00 0.00 4.85
2127 3182 4.752101 GGTGTTAGGCTGATCATGTATGTC 59.248 45.833 0.00 0.00 0.00 3.06
2137 3192 3.545703 GTTGCTATGGTGTTAGGCTGAT 58.454 45.455 0.00 0.00 0.00 2.90
2157 3212 1.069049 GCTTCCAGCATTTTGTGTGGT 59.931 47.619 0.00 0.00 41.89 4.16
2284 3339 7.844779 GTCTTATATTATGGGATGGAGGGAGTA 59.155 40.741 0.00 0.00 0.00 2.59
2285 3340 6.674419 GTCTTATATTATGGGATGGAGGGAGT 59.326 42.308 0.00 0.00 0.00 3.85
2286 3341 6.100424 GGTCTTATATTATGGGATGGAGGGAG 59.900 46.154 0.00 0.00 0.00 4.30
2287 3342 5.970640 GGTCTTATATTATGGGATGGAGGGA 59.029 44.000 0.00 0.00 0.00 4.20
2288 3343 5.163301 CGGTCTTATATTATGGGATGGAGGG 60.163 48.000 0.00 0.00 0.00 4.30
2289 3344 5.425539 ACGGTCTTATATTATGGGATGGAGG 59.574 44.000 0.00 0.00 0.00 4.30
2290 3345 6.546428 ACGGTCTTATATTATGGGATGGAG 57.454 41.667 0.00 0.00 0.00 3.86
2291 3346 6.945636 AACGGTCTTATATTATGGGATGGA 57.054 37.500 0.00 0.00 0.00 3.41
2292 3347 7.996098 AAAACGGTCTTATATTATGGGATGG 57.004 36.000 0.00 0.00 0.00 3.51
2293 3348 9.062524 TCAAAAACGGTCTTATATTATGGGATG 57.937 33.333 0.00 0.00 0.00 3.51
2294 3349 9.063615 GTCAAAAACGGTCTTATATTATGGGAT 57.936 33.333 0.00 0.00 0.00 3.85
2295 3350 8.047911 TGTCAAAAACGGTCTTATATTATGGGA 58.952 33.333 0.00 0.00 0.00 4.37
2296 3351 8.126700 GTGTCAAAAACGGTCTTATATTATGGG 58.873 37.037 0.00 0.00 0.00 4.00
2297 3352 8.889717 AGTGTCAAAAACGGTCTTATATTATGG 58.110 33.333 0.00 0.00 0.00 2.74
2301 3356 8.932791 CACTAGTGTCAAAAACGGTCTTATATT 58.067 33.333 15.06 0.00 0.00 1.28
2302 3357 8.092687 ACACTAGTGTCAAAAACGGTCTTATAT 58.907 33.333 22.95 0.00 40.24 0.86
2303 3358 7.436118 ACACTAGTGTCAAAAACGGTCTTATA 58.564 34.615 22.95 0.00 40.24 0.98
2304 3359 6.285990 ACACTAGTGTCAAAAACGGTCTTAT 58.714 36.000 22.95 0.00 40.24 1.73
2305 3360 5.663456 ACACTAGTGTCAAAAACGGTCTTA 58.337 37.500 22.95 0.00 40.24 2.10
2306 3361 4.510571 ACACTAGTGTCAAAAACGGTCTT 58.489 39.130 22.95 0.00 40.24 3.01
2307 3362 4.133013 ACACTAGTGTCAAAAACGGTCT 57.867 40.909 22.95 0.00 40.24 3.85
2308 3363 7.758528 AGATATACACTAGTGTCAAAAACGGTC 59.241 37.037 31.11 15.96 43.74 4.79
2309 3364 7.609056 AGATATACACTAGTGTCAAAAACGGT 58.391 34.615 31.11 6.17 43.74 4.83
2310 3365 8.475331 AAGATATACACTAGTGTCAAAAACGG 57.525 34.615 31.11 0.00 43.74 4.44
2319 3374 9.917887 ACCAAGTAGTAAGATATACACTAGTGT 57.082 33.333 30.13 30.13 46.87 3.55
2342 3397 7.286775 AGCAGAGGAACAAAGTAATTTAAACCA 59.713 33.333 0.00 0.00 0.00 3.67
2441 3498 7.039882 TGTAAGCTGAAGTTAACTATAGCCAC 58.960 38.462 27.30 24.94 36.38 5.01
2447 3504 9.502091 TGAATGTTGTAAGCTGAAGTTAACTAT 57.498 29.630 8.92 0.00 0.00 2.12
2455 3512 5.929697 TGACTGAATGTTGTAAGCTGAAG 57.070 39.130 0.00 0.00 0.00 3.02
2476 3533 5.361857 AGGAATGCCTGGAGTATTTCATTTG 59.638 40.000 0.00 0.00 44.90 2.32
2477 3534 5.522641 AGGAATGCCTGGAGTATTTCATTT 58.477 37.500 0.00 0.00 44.90 2.32
2478 3535 5.134725 AGGAATGCCTGGAGTATTTCATT 57.865 39.130 0.00 0.00 44.90 2.57
2479 3536 4.803329 AGGAATGCCTGGAGTATTTCAT 57.197 40.909 0.00 0.00 44.90 2.57
2480 3537 4.591321 AAGGAATGCCTGGAGTATTTCA 57.409 40.909 0.00 0.00 46.28 2.69
2482 3539 7.978099 ATTAAAAGGAATGCCTGGAGTATTT 57.022 32.000 0.00 0.00 46.28 1.40
2483 3540 7.619302 TCAATTAAAAGGAATGCCTGGAGTATT 59.381 33.333 0.00 0.00 46.28 1.89
2484 3541 7.125391 TCAATTAAAAGGAATGCCTGGAGTAT 58.875 34.615 0.00 0.00 46.28 2.12
2485 3542 6.489603 TCAATTAAAAGGAATGCCTGGAGTA 58.510 36.000 0.00 0.00 46.28 2.59
2486 3543 5.332743 TCAATTAAAAGGAATGCCTGGAGT 58.667 37.500 0.00 0.00 46.28 3.85
2526 3773 7.660112 TGTGTGATGTGCTATGAAGAATTTTT 58.340 30.769 0.00 0.00 0.00 1.94
2527 3774 7.218228 TGTGTGATGTGCTATGAAGAATTTT 57.782 32.000 0.00 0.00 0.00 1.82
2528 3775 6.822667 TGTGTGATGTGCTATGAAGAATTT 57.177 33.333 0.00 0.00 0.00 1.82
2529 3776 7.553760 TGTATGTGTGATGTGCTATGAAGAATT 59.446 33.333 0.00 0.00 0.00 2.17
2530 3777 7.011763 GTGTATGTGTGATGTGCTATGAAGAAT 59.988 37.037 0.00 0.00 0.00 2.40
2531 3778 6.313658 GTGTATGTGTGATGTGCTATGAAGAA 59.686 38.462 0.00 0.00 0.00 2.52
2532 3779 5.812127 GTGTATGTGTGATGTGCTATGAAGA 59.188 40.000 0.00 0.00 0.00 2.87
2533 3780 5.581874 TGTGTATGTGTGATGTGCTATGAAG 59.418 40.000 0.00 0.00 0.00 3.02
2534 3781 5.351189 GTGTGTATGTGTGATGTGCTATGAA 59.649 40.000 0.00 0.00 0.00 2.57
2535 3782 4.869861 GTGTGTATGTGTGATGTGCTATGA 59.130 41.667 0.00 0.00 0.00 2.15
2536 3783 4.630940 TGTGTGTATGTGTGATGTGCTATG 59.369 41.667 0.00 0.00 0.00 2.23
2537 3784 4.831107 TGTGTGTATGTGTGATGTGCTAT 58.169 39.130 0.00 0.00 0.00 2.97
2538 3785 4.244862 CTGTGTGTATGTGTGATGTGCTA 58.755 43.478 0.00 0.00 0.00 3.49
2539 3786 3.069289 CTGTGTGTATGTGTGATGTGCT 58.931 45.455 0.00 0.00 0.00 4.40
2540 3787 2.160219 CCTGTGTGTATGTGTGATGTGC 59.840 50.000 0.00 0.00 0.00 4.57
2541 3788 2.743664 CCCTGTGTGTATGTGTGATGTG 59.256 50.000 0.00 0.00 0.00 3.21
2542 3789 2.371841 ACCCTGTGTGTATGTGTGATGT 59.628 45.455 0.00 0.00 0.00 3.06
2543 3790 2.743664 CACCCTGTGTGTATGTGTGATG 59.256 50.000 0.00 0.00 40.26 3.07
2544 3791 3.057969 CACCCTGTGTGTATGTGTGAT 57.942 47.619 0.00 0.00 40.26 3.06
2545 3792 2.542020 CACCCTGTGTGTATGTGTGA 57.458 50.000 0.00 0.00 40.26 3.58
2565 3812 2.289694 ACGGACCTGAAGAAGAACATGG 60.290 50.000 0.00 0.00 0.00 3.66
2581 3828 1.502640 CTCTGACGGTCTGACGGAC 59.497 63.158 20.36 14.94 43.79 4.79
2582 3829 1.674651 CCTCTGACGGTCTGACGGA 60.675 63.158 20.36 0.00 38.39 4.69
2583 3830 1.674651 TCCTCTGACGGTCTGACGG 60.675 63.158 12.94 16.35 38.39 4.79
2584 3831 1.502640 GTCCTCTGACGGTCTGACG 59.497 63.158 12.94 9.88 40.31 4.35
2606 3853 8.589335 TCTACATCTCCGCAGTATTTTATTTC 57.411 34.615 0.00 0.00 0.00 2.17
2621 3868 3.041946 AGGTGGGTTGATCTACATCTCC 58.958 50.000 9.51 10.13 0.00 3.71
2623 3870 3.041946 GGAGGTGGGTTGATCTACATCT 58.958 50.000 9.51 1.36 0.00 2.90
2651 3898 4.084328 GGATCTTGTCAAAAGTCAGTCGTG 60.084 45.833 0.00 0.00 0.00 4.35
2664 3911 4.411013 TCTGACTCAGAAGGATCTTGTCA 58.589 43.478 6.26 9.55 40.91 3.58
2677 3924 0.956410 ACCGTCGGTCTCTGACTCAG 60.956 60.000 12.23 0.00 34.17 3.35
2680 3927 0.956410 CTCACCGTCGGTCTCTGACT 60.956 60.000 15.67 0.00 31.02 3.41
2682 3929 0.250597 TTCTCACCGTCGGTCTCTGA 60.251 55.000 15.67 8.08 31.02 3.27
2692 3939 1.179814 AGCTCTCCGTTTCTCACCGT 61.180 55.000 0.00 0.00 0.00 4.83
2700 3947 1.831652 CTCCCACCAGCTCTCCGTTT 61.832 60.000 0.00 0.00 0.00 3.60
2703 3950 2.681778 ACTCCCACCAGCTCTCCG 60.682 66.667 0.00 0.00 0.00 4.63
2704 3951 0.614979 TACACTCCCACCAGCTCTCC 60.615 60.000 0.00 0.00 0.00 3.71
2708 3955 1.112113 CGTATACACTCCCACCAGCT 58.888 55.000 3.32 0.00 0.00 4.24
2710 3957 1.681793 CCTCGTATACACTCCCACCAG 59.318 57.143 3.32 0.00 0.00 4.00
2718 3965 3.693807 TCTGGTGAACCTCGTATACACT 58.306 45.455 3.32 0.00 36.82 3.55
2735 3982 2.107204 CCCTCATCCCCAAACTATCTGG 59.893 54.545 0.00 0.00 0.00 3.86
2751 3998 4.343814 TCGATGTGTATAATTCAGCCCTCA 59.656 41.667 0.00 0.00 0.00 3.86
2775 4022 9.204570 GGCAACATCTACAGAACGTAATATTAT 57.795 33.333 0.00 0.00 0.00 1.28
2776 4023 8.418662 AGGCAACATCTACAGAACGTAATATTA 58.581 33.333 0.00 0.00 41.41 0.98
2777 4024 7.272978 AGGCAACATCTACAGAACGTAATATT 58.727 34.615 0.00 0.00 41.41 1.28
2778 4025 6.817184 AGGCAACATCTACAGAACGTAATAT 58.183 36.000 0.00 0.00 41.41 1.28
2779 4026 6.216801 AGGCAACATCTACAGAACGTAATA 57.783 37.500 0.00 0.00 41.41 0.98
2780 4027 5.086104 AGGCAACATCTACAGAACGTAAT 57.914 39.130 0.00 0.00 41.41 1.89
2825 4072 4.286297 TGTTCTGGATGTCTAAACCCAG 57.714 45.455 0.00 0.00 45.63 4.45
2852 4099 7.275920 ACCTAATGGCATTTGTAAGTAGAGAG 58.724 38.462 19.21 4.73 36.63 3.20
2924 4171 1.620323 AGGCGCTCTATGCATACATGA 59.380 47.619 7.64 0.00 43.06 3.07
2962 4209 7.968405 AGCATTAACGATTCACAACCTTAATTC 59.032 33.333 0.00 0.00 0.00 2.17
3096 4351 4.633126 CACCTCTGTTCTGTCCATGTATTG 59.367 45.833 0.00 0.00 0.00 1.90
3136 4391 0.393944 TCTCACCTGAGCCGTACGAT 60.394 55.000 18.76 4.50 41.80 3.73
3144 4399 1.080434 GTCACCGTCTCACCTGAGC 60.080 63.158 0.00 0.00 41.80 4.26
3169 4424 0.171455 AAGTCCTAACGCGAGCTCAG 59.829 55.000 15.93 9.60 0.00 3.35
3180 4435 2.423088 CCGAGCCTCTCCTAAGTCCTAA 60.423 54.545 0.00 0.00 0.00 2.69
3181 4436 1.143277 CCGAGCCTCTCCTAAGTCCTA 59.857 57.143 0.00 0.00 0.00 2.94
3182 4437 0.106419 CCGAGCCTCTCCTAAGTCCT 60.106 60.000 0.00 0.00 0.00 3.85
3183 4438 1.740332 GCCGAGCCTCTCCTAAGTCC 61.740 65.000 0.00 0.00 0.00 3.85
3184 4439 1.038130 TGCCGAGCCTCTCCTAAGTC 61.038 60.000 0.00 0.00 0.00 3.01
3185 4440 0.397816 ATGCCGAGCCTCTCCTAAGT 60.398 55.000 0.00 0.00 0.00 2.24
3186 4441 0.033228 CATGCCGAGCCTCTCCTAAG 59.967 60.000 0.00 0.00 0.00 2.18
3338 4618 4.899239 CATCAGCTCCCGCCGTCC 62.899 72.222 0.00 0.00 36.60 4.79
3339 4619 4.899239 CCATCAGCTCCCGCCGTC 62.899 72.222 0.00 0.00 36.60 4.79
3385 4665 0.400213 ACAACCCTCAAGCGATCCAA 59.600 50.000 0.00 0.00 0.00 3.53
3433 4737 1.168407 CGGCGCATGGATTGGAATCT 61.168 55.000 10.83 0.00 35.73 2.40
3512 4816 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
3513 4817 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3514 4818 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3515 4819 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3516 4820 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3517 4821 2.028930 TCTACACACACACACACACACA 60.029 45.455 0.00 0.00 0.00 3.72
3518 4822 2.612604 TCTACACACACACACACACAC 58.387 47.619 0.00 0.00 0.00 3.82
3551 4855 8.423906 AATATAATCTCTCCGGTGTCTAACAT 57.576 34.615 0.00 0.00 0.00 2.71
3620 4930 6.149640 TGAGCATCTAGGATACGAGTCAATAC 59.850 42.308 0.00 0.00 40.65 1.89
3648 4964 1.079612 GGCCACTGCAAAGCCAATC 60.080 57.895 14.69 0.00 46.34 2.67
3740 5056 0.318762 AAGGTCGTGAAGCTCTGGAC 59.681 55.000 0.00 0.00 33.60 4.02
3927 5244 4.448210 TCCAGTAGTGGTTCAAGTTGTTC 58.552 43.478 16.36 0.00 45.28 3.18
4005 5322 2.820619 CGAGCAGACGCCGTAGCTA 61.821 63.158 15.38 0.00 39.83 3.32
4212 5529 4.541705 AGATCTGGTAGAGCTGCTTCTTA 58.458 43.478 2.53 0.00 39.86 2.10
4287 5604 0.036732 CCTCAGGGCACTGCAGTTTA 59.963 55.000 18.94 0.00 44.54 2.01
4326 5643 2.912986 GTTGAGCATCCACGTGTGA 58.087 52.632 15.65 11.79 0.00 3.58
4406 5723 1.171308 GTACGTACTCAGGTGAGGCA 58.829 55.000 18.47 0.00 46.13 4.75
4675 6001 6.336842 ACAGCAGAAGCAGACATAATTTTT 57.663 33.333 0.00 0.00 45.49 1.94
4676 6002 5.972107 ACAGCAGAAGCAGACATAATTTT 57.028 34.783 0.00 0.00 45.49 1.82
4677 6003 5.336213 CCAACAGCAGAAGCAGACATAATTT 60.336 40.000 0.00 0.00 45.49 1.82
4678 6004 4.157289 CCAACAGCAGAAGCAGACATAATT 59.843 41.667 0.00 0.00 45.49 1.40
4679 6005 3.693085 CCAACAGCAGAAGCAGACATAAT 59.307 43.478 0.00 0.00 45.49 1.28
4680 6006 3.076621 CCAACAGCAGAAGCAGACATAA 58.923 45.455 0.00 0.00 45.49 1.90
4681 6007 2.038952 ACCAACAGCAGAAGCAGACATA 59.961 45.455 0.00 0.00 45.49 2.29
4685 6011 3.423539 AATACCAACAGCAGAAGCAGA 57.576 42.857 0.00 0.00 45.49 4.26
4779 6105 3.859386 CAGAGTGAACAAAAGTTTGCACC 59.141 43.478 3.68 1.18 41.79 5.01
4811 6137 4.582701 TGCTGAACCCACAATAAACAAG 57.417 40.909 0.00 0.00 0.00 3.16
5076 7469 1.004044 CAAGGTCAAGATGGAGGCAGT 59.996 52.381 0.00 0.00 0.00 4.40
5112 7505 0.182537 TTCACCCACCTCTGTGTTGG 59.817 55.000 0.00 0.00 41.09 3.77
5174 7568 2.704065 TGTTAGGGCTGGCCTATTACTC 59.296 50.000 28.07 16.57 36.10 2.59
5188 7582 5.712152 ATTTGCACTTTCTCTTGTTAGGG 57.288 39.130 0.00 0.00 0.00 3.53
5201 7595 7.270757 TGTTGTTGATACAGTATTTGCACTT 57.729 32.000 0.00 0.00 35.28 3.16
5214 7608 6.204688 TGATCTGAAGTGGTTGTTGTTGATAC 59.795 38.462 0.00 0.00 0.00 2.24
5284 7678 2.735444 GCATCCGAACTTCGAGTGATCA 60.735 50.000 12.87 0.00 43.74 2.92
5338 7732 8.311109 TGTTGCATATCTACTTTGTGACTTAGA 58.689 33.333 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.