Multiple sequence alignment - TraesCS1D01G149600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G149600 chr1D 100.000 2525 0 0 1 2525 206074429 206071905 0.000000e+00 4663.0
1 TraesCS1D01G149600 chr1D 99.032 1446 13 1 1 1446 254500933 254502377 0.000000e+00 2591.0
2 TraesCS1D01G149600 chr1D 99.208 758 4 1 1620 2375 254497024 254497781 0.000000e+00 1365.0
3 TraesCS1D01G149600 chr1D 98.813 758 6 2 1620 2375 19957061 19957817 0.000000e+00 1347.0
4 TraesCS1D01G149600 chr5D 99.307 1587 11 0 1 1587 560875404 560876990 0.000000e+00 2870.0
5 TraesCS1D01G149600 chr5D 98.488 1587 23 1 1 1587 329192887 329194472 0.000000e+00 2796.0
6 TraesCS1D01G149600 chr5D 99.340 758 3 1 1620 2375 240136733 240137490 0.000000e+00 1371.0
7 TraesCS1D01G149600 chr5D 98.945 758 5 2 1620 2375 6202251 6201495 0.000000e+00 1352.0
8 TraesCS1D01G149600 chr5D 95.413 109 5 0 2402 2510 332218287 332218395 9.280000e-40 174.0
9 TraesCS1D01G149600 chr3B 99.181 1587 13 0 1 1587 201517613 201519199 0.000000e+00 2859.0
10 TraesCS1D01G149600 chr3B 98.285 758 11 1 1620 2375 201512155 201512912 0.000000e+00 1327.0
11 TraesCS1D01G149600 chr3B 95.238 42 1 1 1435 1475 323173517 323173558 5.830000e-07 65.8
12 TraesCS1D01G149600 chr5A 97.984 1587 31 1 1 1587 283489844 283488259 0.000000e+00 2752.0
13 TraesCS1D01G149600 chr6A 97.984 1587 28 1 1 1587 260129837 260128255 0.000000e+00 2750.0
14 TraesCS1D01G149600 chr6A 90.678 118 5 1 2402 2519 464927044 464927155 4.350000e-33 152.0
15 TraesCS1D01G149600 chr4D 97.984 1587 29 3 1 1587 19919423 19921006 0.000000e+00 2750.0
16 TraesCS1D01G149600 chr4D 98.021 758 13 1 1620 2375 19915524 19916281 0.000000e+00 1315.0
17 TraesCS1D01G149600 chr7A 96.786 1587 49 2 1 1587 352191097 352189513 0.000000e+00 2647.0
18 TraesCS1D01G149600 chrUn 99.626 1336 5 0 1 1336 93421929 93420594 0.000000e+00 2440.0
19 TraesCS1D01G149600 chr1A 98.813 758 6 2 1620 2375 112777006 112776250 0.000000e+00 1347.0
20 TraesCS1D01G149600 chr3D 98.419 759 8 3 1620 2375 21903652 21904409 0.000000e+00 1332.0
21 TraesCS1D01G149600 chr6B 97.889 758 14 1 1620 2375 22424971 22425728 0.000000e+00 1310.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G149600 chr1D 206071905 206074429 2524 True 4663.0 4663 100.0000 1 2525 1 chr1D.!!$R1 2524
1 TraesCS1D01G149600 chr1D 254497024 254502377 5353 False 1978.0 2591 99.1200 1 2375 2 chr1D.!!$F2 2374
2 TraesCS1D01G149600 chr1D 19957061 19957817 756 False 1347.0 1347 98.8130 1620 2375 1 chr1D.!!$F1 755
3 TraesCS1D01G149600 chr5D 560875404 560876990 1586 False 2870.0 2870 99.3070 1 1587 1 chr5D.!!$F4 1586
4 TraesCS1D01G149600 chr5D 329192887 329194472 1585 False 2796.0 2796 98.4880 1 1587 1 chr5D.!!$F2 1586
5 TraesCS1D01G149600 chr5D 240136733 240137490 757 False 1371.0 1371 99.3400 1620 2375 1 chr5D.!!$F1 755
6 TraesCS1D01G149600 chr5D 6201495 6202251 756 True 1352.0 1352 98.9450 1620 2375 1 chr5D.!!$R1 755
7 TraesCS1D01G149600 chr3B 201517613 201519199 1586 False 2859.0 2859 99.1810 1 1587 1 chr3B.!!$F2 1586
8 TraesCS1D01G149600 chr3B 201512155 201512912 757 False 1327.0 1327 98.2850 1620 2375 1 chr3B.!!$F1 755
9 TraesCS1D01G149600 chr5A 283488259 283489844 1585 True 2752.0 2752 97.9840 1 1587 1 chr5A.!!$R1 1586
10 TraesCS1D01G149600 chr6A 260128255 260129837 1582 True 2750.0 2750 97.9840 1 1587 1 chr6A.!!$R1 1586
11 TraesCS1D01G149600 chr4D 19915524 19921006 5482 False 2032.5 2750 98.0025 1 2375 2 chr4D.!!$F1 2374
12 TraesCS1D01G149600 chr7A 352189513 352191097 1584 True 2647.0 2647 96.7860 1 1587 1 chr7A.!!$R1 1586
13 TraesCS1D01G149600 chrUn 93420594 93421929 1335 True 2440.0 2440 99.6260 1 1336 1 chrUn.!!$R1 1335
14 TraesCS1D01G149600 chr1A 112776250 112777006 756 True 1347.0 1347 98.8130 1620 2375 1 chr1A.!!$R1 755
15 TraesCS1D01G149600 chr3D 21903652 21904409 757 False 1332.0 1332 98.4190 1620 2375 1 chr3D.!!$F1 755
16 TraesCS1D01G149600 chr6B 22424971 22425728 757 False 1310.0 1310 97.8890 1620 2375 1 chr6B.!!$F1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 4690 4.240096 GAGACAATCCACAAAGCAATTGG 58.76 43.478 7.72 0.0 43.66 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 5502 2.603021 AGTCGCCATCTCCATATCTGT 58.397 47.619 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
780 4690 4.240096 GAGACAATCCACAAAGCAATTGG 58.760 43.478 7.72 0.00 43.66 3.16
1351 5261 5.071370 TGGGCGTTCTTTTAATGGTTTCTA 58.929 37.500 0.00 0.00 0.00 2.10
1587 5497 9.984190 GTATCTAGGAAATAGTTACTTCCAAGG 57.016 37.037 0.00 0.00 43.12 3.61
1588 5498 8.625467 ATCTAGGAAATAGTTACTTCCAAGGT 57.375 34.615 0.00 0.00 43.12 3.50
1589 5499 8.445361 TCTAGGAAATAGTTACTTCCAAGGTT 57.555 34.615 0.00 0.00 43.12 3.50
1590 5500 8.887393 TCTAGGAAATAGTTACTTCCAAGGTTT 58.113 33.333 0.00 0.00 43.12 3.27
1593 5503 9.293404 AGGAAATAGTTACTTCCAAGGTTTAAC 57.707 33.333 4.62 0.00 43.12 2.01
1594 5504 9.070179 GGAAATAGTTACTTCCAAGGTTTAACA 57.930 33.333 0.00 0.00 40.79 2.41
1596 5506 9.856162 AAATAGTTACTTCCAAGGTTTAACAGA 57.144 29.630 0.00 0.00 0.00 3.41
1600 5510 9.449719 AGTTACTTCCAAGGTTTAACAGATATG 57.550 33.333 0.00 0.00 0.00 1.78
1601 5511 8.674607 GTTACTTCCAAGGTTTAACAGATATGG 58.325 37.037 0.00 0.00 0.00 2.74
1602 5512 7.027874 ACTTCCAAGGTTTAACAGATATGGA 57.972 36.000 0.00 0.57 34.10 3.41
1603 5513 7.112779 ACTTCCAAGGTTTAACAGATATGGAG 58.887 38.462 0.00 1.42 37.07 3.86
1604 5514 6.884472 TCCAAGGTTTAACAGATATGGAGA 57.116 37.500 0.00 0.00 32.29 3.71
1605 5515 7.451731 TCCAAGGTTTAACAGATATGGAGAT 57.548 36.000 0.00 0.00 32.29 2.75
1606 5516 7.282585 TCCAAGGTTTAACAGATATGGAGATG 58.717 38.462 0.00 0.00 32.29 2.90
1607 5517 6.488006 CCAAGGTTTAACAGATATGGAGATGG 59.512 42.308 0.00 0.00 0.00 3.51
1608 5518 5.625150 AGGTTTAACAGATATGGAGATGGC 58.375 41.667 0.00 0.00 0.00 4.40
1609 5519 4.452455 GGTTTAACAGATATGGAGATGGCG 59.548 45.833 0.00 0.00 0.00 5.69
1610 5520 5.297547 GTTTAACAGATATGGAGATGGCGA 58.702 41.667 0.00 0.00 0.00 5.54
1611 5521 3.393089 AACAGATATGGAGATGGCGAC 57.607 47.619 0.00 0.00 0.00 5.19
1612 5522 2.603021 ACAGATATGGAGATGGCGACT 58.397 47.619 0.00 0.00 0.00 4.18
1613 5523 3.767711 ACAGATATGGAGATGGCGACTA 58.232 45.455 0.00 0.00 0.00 2.59
1614 5524 4.152647 ACAGATATGGAGATGGCGACTAA 58.847 43.478 0.00 0.00 0.00 2.24
1615 5525 4.588951 ACAGATATGGAGATGGCGACTAAA 59.411 41.667 0.00 0.00 0.00 1.85
1616 5526 5.070446 ACAGATATGGAGATGGCGACTAAAA 59.930 40.000 0.00 0.00 0.00 1.52
1617 5527 6.169094 CAGATATGGAGATGGCGACTAAAAT 58.831 40.000 0.00 0.00 0.00 1.82
1618 5528 6.652481 CAGATATGGAGATGGCGACTAAAATT 59.348 38.462 0.00 0.00 0.00 1.82
1763 5673 5.726729 TGCGATAAAATAAAGCGACATCA 57.273 34.783 0.00 0.00 0.00 3.07
1978 5889 4.766891 CCAATGTGGAGACAAGGTATGTTT 59.233 41.667 0.00 0.00 46.06 2.83
2375 6290 4.746611 GCAGAAGGTTTTGATCCTTTTGTG 59.253 41.667 13.82 7.34 44.09 3.33
2376 6291 5.682212 GCAGAAGGTTTTGATCCTTTTGTGT 60.682 40.000 13.82 0.00 44.09 3.72
2377 6292 5.750067 CAGAAGGTTTTGATCCTTTTGTGTG 59.250 40.000 6.96 0.00 44.19 3.82
2378 6293 5.422012 AGAAGGTTTTGATCCTTTTGTGTGT 59.578 36.000 0.00 0.00 44.19 3.72
2379 6294 5.009854 AGGTTTTGATCCTTTTGTGTGTG 57.990 39.130 0.00 0.00 30.18 3.82
2380 6295 4.466015 AGGTTTTGATCCTTTTGTGTGTGT 59.534 37.500 0.00 0.00 30.18 3.72
2381 6296 4.566360 GGTTTTGATCCTTTTGTGTGTGTG 59.434 41.667 0.00 0.00 0.00 3.82
2382 6297 5.167845 GTTTTGATCCTTTTGTGTGTGTGT 58.832 37.500 0.00 0.00 0.00 3.72
2383 6298 4.368874 TTGATCCTTTTGTGTGTGTGTG 57.631 40.909 0.00 0.00 0.00 3.82
2384 6299 3.351740 TGATCCTTTTGTGTGTGTGTGT 58.648 40.909 0.00 0.00 0.00 3.72
2385 6300 3.128415 TGATCCTTTTGTGTGTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
2386 6301 2.509569 TCCTTTTGTGTGTGTGTGTGT 58.490 42.857 0.00 0.00 0.00 3.72
2387 6302 2.227626 TCCTTTTGTGTGTGTGTGTGTG 59.772 45.455 0.00 0.00 0.00 3.82
2388 6303 2.030363 CCTTTTGTGTGTGTGTGTGTGT 60.030 45.455 0.00 0.00 0.00 3.72
2389 6304 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
2390 6305 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2391 6306 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2392 6307 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2393 6308 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
2394 6309 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
2395 6310 3.866327 GTGTGTGTGTGTGTGTGTGTATA 59.134 43.478 0.00 0.00 0.00 1.47
2396 6311 4.509970 GTGTGTGTGTGTGTGTGTGTATAT 59.490 41.667 0.00 0.00 0.00 0.86
2397 6312 5.692654 GTGTGTGTGTGTGTGTGTGTATATA 59.307 40.000 0.00 0.00 0.00 0.86
2398 6313 6.367695 GTGTGTGTGTGTGTGTGTGTATATAT 59.632 38.462 0.00 0.00 0.00 0.86
2399 6314 7.542824 GTGTGTGTGTGTGTGTGTGTATATATA 59.457 37.037 0.00 0.00 0.00 0.86
2400 6315 8.254508 TGTGTGTGTGTGTGTGTGTATATATAT 58.745 33.333 0.00 0.00 0.00 0.86
2401 6316 9.093970 GTGTGTGTGTGTGTGTGTATATATATT 57.906 33.333 0.00 0.00 0.00 1.28
2402 6317 9.660180 TGTGTGTGTGTGTGTGTATATATATTT 57.340 29.630 0.00 0.00 0.00 1.40
2403 6318 9.914923 GTGTGTGTGTGTGTGTATATATATTTG 57.085 33.333 0.00 0.00 0.00 2.32
2404 6319 9.877178 TGTGTGTGTGTGTGTATATATATTTGA 57.123 29.630 0.00 0.00 0.00 2.69
2423 6338 7.959658 ATTTGAACCTTTGATGGTATGATGA 57.040 32.000 0.00 0.00 39.83 2.92
2424 6339 7.395190 TTTGAACCTTTGATGGTATGATGAG 57.605 36.000 0.00 0.00 39.83 2.90
2425 6340 6.312141 TGAACCTTTGATGGTATGATGAGA 57.688 37.500 0.00 0.00 39.83 3.27
2426 6341 6.720309 TGAACCTTTGATGGTATGATGAGAA 58.280 36.000 0.00 0.00 39.83 2.87
2427 6342 6.825213 TGAACCTTTGATGGTATGATGAGAAG 59.175 38.462 0.00 0.00 39.83 2.85
2428 6343 6.319048 ACCTTTGATGGTATGATGAGAAGT 57.681 37.500 0.00 0.00 38.79 3.01
2429 6344 6.352516 ACCTTTGATGGTATGATGAGAAGTC 58.647 40.000 0.00 0.00 38.79 3.01
2430 6345 6.070021 ACCTTTGATGGTATGATGAGAAGTCA 60.070 38.462 0.00 0.00 38.79 3.41
2431 6346 6.482641 CCTTTGATGGTATGATGAGAAGTCAG 59.517 42.308 0.00 0.00 35.66 3.51
2432 6347 4.953667 TGATGGTATGATGAGAAGTCAGC 58.046 43.478 0.00 0.00 39.71 4.26
2489 6404 7.539712 TGCTTAATTAGAGCACATCAGTAAC 57.460 36.000 14.44 0.00 44.63 2.50
2490 6405 7.102993 TGCTTAATTAGAGCACATCAGTAACA 58.897 34.615 14.44 0.00 44.63 2.41
2491 6406 7.770433 TGCTTAATTAGAGCACATCAGTAACAT 59.230 33.333 14.44 0.00 44.63 2.71
2492 6407 8.066595 GCTTAATTAGAGCACATCAGTAACATG 58.933 37.037 12.10 0.00 39.89 3.21
2493 6408 9.317936 CTTAATTAGAGCACATCAGTAACATGA 57.682 33.333 0.00 0.00 0.00 3.07
2494 6409 9.665719 TTAATTAGAGCACATCAGTAACATGAA 57.334 29.630 0.00 0.00 31.76 2.57
2495 6410 8.565896 AATTAGAGCACATCAGTAACATGAAA 57.434 30.769 0.00 0.00 31.76 2.69
2496 6411 7.977789 TTAGAGCACATCAGTAACATGAAAA 57.022 32.000 0.00 0.00 31.76 2.29
2497 6412 6.492007 AGAGCACATCAGTAACATGAAAAG 57.508 37.500 0.00 0.00 31.76 2.27
2498 6413 6.233434 AGAGCACATCAGTAACATGAAAAGA 58.767 36.000 0.00 0.00 31.76 2.52
2499 6414 6.712095 AGAGCACATCAGTAACATGAAAAGAA 59.288 34.615 0.00 0.00 31.76 2.52
2500 6415 6.906659 AGCACATCAGTAACATGAAAAGAAG 58.093 36.000 0.00 0.00 31.76 2.85
2501 6416 6.712095 AGCACATCAGTAACATGAAAAGAAGA 59.288 34.615 0.00 0.00 31.76 2.87
2502 6417 7.229306 AGCACATCAGTAACATGAAAAGAAGAA 59.771 33.333 0.00 0.00 31.76 2.52
2503 6418 7.862372 GCACATCAGTAACATGAAAAGAAGAAA 59.138 33.333 0.00 0.00 31.76 2.52
2504 6419 9.173939 CACATCAGTAACATGAAAAGAAGAAAC 57.826 33.333 0.00 0.00 31.76 2.78
2505 6420 8.902806 ACATCAGTAACATGAAAAGAAGAAACA 58.097 29.630 0.00 0.00 31.76 2.83
2506 6421 9.903682 CATCAGTAACATGAAAAGAAGAAACAT 57.096 29.630 0.00 0.00 31.76 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
780 4690 5.807011 GTGGGCTTACAAATTTGATCATGAC 59.193 40.000 24.64 12.23 0.00 3.06
1587 5497 5.177696 GTCGCCATCTCCATATCTGTTAAAC 59.822 44.000 0.00 0.00 0.00 2.01
1588 5498 5.070446 AGTCGCCATCTCCATATCTGTTAAA 59.930 40.000 0.00 0.00 0.00 1.52
1589 5499 4.588951 AGTCGCCATCTCCATATCTGTTAA 59.411 41.667 0.00 0.00 0.00 2.01
1590 5500 4.152647 AGTCGCCATCTCCATATCTGTTA 58.847 43.478 0.00 0.00 0.00 2.41
1591 5501 2.968574 AGTCGCCATCTCCATATCTGTT 59.031 45.455 0.00 0.00 0.00 3.16
1592 5502 2.603021 AGTCGCCATCTCCATATCTGT 58.397 47.619 0.00 0.00 0.00 3.41
1593 5503 4.790765 TTAGTCGCCATCTCCATATCTG 57.209 45.455 0.00 0.00 0.00 2.90
1594 5504 5.808366 TTTTAGTCGCCATCTCCATATCT 57.192 39.130 0.00 0.00 0.00 1.98
1595 5505 7.389053 AGAAATTTTAGTCGCCATCTCCATATC 59.611 37.037 0.00 0.00 0.00 1.63
1596 5506 7.227156 AGAAATTTTAGTCGCCATCTCCATAT 58.773 34.615 0.00 0.00 0.00 1.78
1597 5507 6.591935 AGAAATTTTAGTCGCCATCTCCATA 58.408 36.000 0.00 0.00 0.00 2.74
1598 5508 5.440610 AGAAATTTTAGTCGCCATCTCCAT 58.559 37.500 0.00 0.00 0.00 3.41
1599 5509 4.843728 AGAAATTTTAGTCGCCATCTCCA 58.156 39.130 0.00 0.00 0.00 3.86
1600 5510 5.819825 AAGAAATTTTAGTCGCCATCTCC 57.180 39.130 0.00 0.00 0.00 3.71
1601 5511 7.078011 AGAAAGAAATTTTAGTCGCCATCTC 57.922 36.000 0.00 0.00 0.00 2.75
1602 5512 7.391833 AGAAGAAAGAAATTTTAGTCGCCATCT 59.608 33.333 0.00 0.00 0.00 2.90
1603 5513 7.530863 AGAAGAAAGAAATTTTAGTCGCCATC 58.469 34.615 0.00 0.00 0.00 3.51
1604 5514 7.454260 AGAAGAAAGAAATTTTAGTCGCCAT 57.546 32.000 0.00 0.00 0.00 4.40
1605 5515 6.877611 AGAAGAAAGAAATTTTAGTCGCCA 57.122 33.333 0.00 0.00 0.00 5.69
1606 5516 9.278734 CATAAGAAGAAAGAAATTTTAGTCGCC 57.721 33.333 0.00 0.00 0.00 5.54
1618 5528 8.299570 GCCAATTCTGTTCATAAGAAGAAAGAA 58.700 33.333 4.03 4.03 37.10 2.52
1763 5673 7.454694 ACCCCTTTAGCAAAGAAAAATAGACAT 59.545 33.333 9.37 0.00 41.02 3.06
1978 5889 4.819105 ACGAGTCATGAAGGGAATTACA 57.181 40.909 0.00 0.00 0.00 2.41
2375 6290 6.961359 ATATATACACACACACACACACAC 57.039 37.500 0.00 0.00 0.00 3.82
2376 6291 9.660180 AAATATATATACACACACACACACACA 57.340 29.630 0.00 0.00 0.00 3.72
2377 6292 9.914923 CAAATATATATACACACACACACACAC 57.085 33.333 0.00 0.00 0.00 3.82
2378 6293 9.877178 TCAAATATATATACACACACACACACA 57.123 29.630 0.00 0.00 0.00 3.72
2397 6312 9.645128 TCATCATACCATCAAAGGTTCAAATAT 57.355 29.630 0.00 0.00 43.08 1.28
2398 6313 9.123902 CTCATCATACCATCAAAGGTTCAAATA 57.876 33.333 0.00 0.00 43.08 1.40
2399 6314 7.835682 TCTCATCATACCATCAAAGGTTCAAAT 59.164 33.333 0.00 0.00 43.08 2.32
2400 6315 7.174413 TCTCATCATACCATCAAAGGTTCAAA 58.826 34.615 0.00 0.00 43.08 2.69
2401 6316 6.720309 TCTCATCATACCATCAAAGGTTCAA 58.280 36.000 0.00 0.00 43.08 2.69
2402 6317 6.312141 TCTCATCATACCATCAAAGGTTCA 57.688 37.500 0.00 0.00 43.08 3.18
2403 6318 6.825721 ACTTCTCATCATACCATCAAAGGTTC 59.174 38.462 0.00 0.00 43.08 3.62
2404 6319 6.725364 ACTTCTCATCATACCATCAAAGGTT 58.275 36.000 0.00 0.00 43.08 3.50
2405 6320 6.070021 TGACTTCTCATCATACCATCAAAGGT 60.070 38.462 0.00 0.00 45.72 3.50
2406 6321 6.351711 TGACTTCTCATCATACCATCAAAGG 58.648 40.000 0.00 0.00 0.00 3.11
2407 6322 6.018098 GCTGACTTCTCATCATACCATCAAAG 60.018 42.308 0.00 0.00 0.00 2.77
2408 6323 5.819379 GCTGACTTCTCATCATACCATCAAA 59.181 40.000 0.00 0.00 0.00 2.69
2409 6324 5.104817 TGCTGACTTCTCATCATACCATCAA 60.105 40.000 0.00 0.00 0.00 2.57
2410 6325 4.406649 TGCTGACTTCTCATCATACCATCA 59.593 41.667 0.00 0.00 0.00 3.07
2411 6326 4.953667 TGCTGACTTCTCATCATACCATC 58.046 43.478 0.00 0.00 0.00 3.51
2412 6327 5.363562 TTGCTGACTTCTCATCATACCAT 57.636 39.130 0.00 0.00 0.00 3.55
2413 6328 4.824479 TTGCTGACTTCTCATCATACCA 57.176 40.909 0.00 0.00 0.00 3.25
2414 6329 6.690194 ATTTTGCTGACTTCTCATCATACC 57.310 37.500 0.00 0.00 0.00 2.73
2415 6330 8.887717 ACTAATTTTGCTGACTTCTCATCATAC 58.112 33.333 0.00 0.00 0.00 2.39
2417 6332 7.934855 ACTAATTTTGCTGACTTCTCATCAT 57.065 32.000 0.00 0.00 0.00 2.45
2466 6381 7.539712 TGTTACTGATGTGCTCTAATTAAGC 57.460 36.000 10.77 10.77 40.26 3.09
2467 6382 9.317936 TCATGTTACTGATGTGCTCTAATTAAG 57.682 33.333 0.00 0.00 0.00 1.85
2468 6383 9.665719 TTCATGTTACTGATGTGCTCTAATTAA 57.334 29.630 0.00 0.00 0.00 1.40
2469 6384 9.665719 TTTCATGTTACTGATGTGCTCTAATTA 57.334 29.630 0.00 0.00 0.00 1.40
2470 6385 8.565896 TTTCATGTTACTGATGTGCTCTAATT 57.434 30.769 0.00 0.00 0.00 1.40
2471 6386 8.565896 TTTTCATGTTACTGATGTGCTCTAAT 57.434 30.769 0.00 0.00 0.00 1.73
2472 6387 7.877612 TCTTTTCATGTTACTGATGTGCTCTAA 59.122 33.333 0.00 0.00 0.00 2.10
2473 6388 7.386059 TCTTTTCATGTTACTGATGTGCTCTA 58.614 34.615 0.00 0.00 0.00 2.43
2474 6389 6.233434 TCTTTTCATGTTACTGATGTGCTCT 58.767 36.000 0.00 0.00 0.00 4.09
2475 6390 6.486253 TCTTTTCATGTTACTGATGTGCTC 57.514 37.500 0.00 0.00 0.00 4.26
2476 6391 6.712095 TCTTCTTTTCATGTTACTGATGTGCT 59.288 34.615 0.00 0.00 0.00 4.40
2477 6392 6.902341 TCTTCTTTTCATGTTACTGATGTGC 58.098 36.000 0.00 0.00 0.00 4.57
2478 6393 9.173939 GTTTCTTCTTTTCATGTTACTGATGTG 57.826 33.333 0.00 0.00 0.00 3.21
2479 6394 8.902806 TGTTTCTTCTTTTCATGTTACTGATGT 58.097 29.630 0.00 0.00 0.00 3.06
2480 6395 9.903682 ATGTTTCTTCTTTTCATGTTACTGATG 57.096 29.630 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.