Multiple sequence alignment - TraesCS1D01G147900

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G147900 chr1D 100.000 8382 0 0 1 8382 203922602 203914221 0.000000e+00 15479.0
1 TraesCS1D01G147900 chr1D 96.616 591 19 1 7793 8382 433289457 433288867 0.000000e+00 979.0
2 TraesCS1D01G147900 chr1D 95.770 591 24 1 7793 8382 49745854 49745264 0.000000e+00 952.0
3 TraesCS1D01G147900 chr1D 82.444 581 92 8 5578 6150 203868540 203867962 4.520000e-137 499.0
4 TraesCS1D01G147900 chr1D 93.431 274 16 1 184 455 80632182 80632455 1.010000e-108 405.0
5 TraesCS1D01G147900 chr1D 90.535 243 23 0 1490 1732 203873552 203873310 1.050000e-83 322.0
6 TraesCS1D01G147900 chr1D 86.667 225 28 2 1189 1412 203873935 203873712 1.810000e-61 248.0
7 TraesCS1D01G147900 chr1D 83.983 231 37 0 5258 5488 203868931 203868701 1.100000e-53 222.0
8 TraesCS1D01G147900 chr1D 87.629 97 7 4 1001 1093 203874089 203873994 3.200000e-19 108.0
9 TraesCS1D01G147900 chr1B 89.618 2726 146 50 5097 7792 298164088 298161470 0.000000e+00 3339.0
10 TraesCS1D01G147900 chr1B 89.834 1328 82 30 490 1781 298167432 298166122 0.000000e+00 1655.0
11 TraesCS1D01G147900 chr1B 87.659 1256 68 28 3326 4533 298165325 298164109 0.000000e+00 1380.0
12 TraesCS1D01G147900 chr1B 82.444 581 92 8 5578 6150 298075282 298074704 4.520000e-137 499.0
13 TraesCS1D01G147900 chr1B 90.574 244 19 4 1490 1731 298088913 298088672 3.770000e-83 320.0
14 TraesCS1D01G147900 chr1B 88.000 225 25 2 1189 1412 298089249 298089026 1.790000e-66 265.0
15 TraesCS1D01G147900 chr1B 85.281 231 34 0 5258 5488 298075673 298075443 1.090000e-58 239.0
16 TraesCS1D01G147900 chr1B 94.737 133 5 1 1857 1989 298166125 298165995 1.100000e-48 206.0
17 TraesCS1D01G147900 chr1B 78.445 283 30 17 3066 3334 298166002 298165737 1.130000e-33 156.0
18 TraesCS1D01G147900 chr1B 92.754 69 5 0 1001 1069 298089403 298089335 5.350000e-17 100.0
19 TraesCS1D01G147900 chr1B 88.333 60 7 0 3261 3320 223751265 223751206 1.170000e-08 73.1
20 TraesCS1D01G147900 chr1A 90.451 1529 77 22 6187 7672 258872272 258870770 0.000000e+00 1951.0
21 TraesCS1D01G147900 chr1A 94.018 1120 52 5 5075 6188 258873640 258872530 0.000000e+00 1683.0
22 TraesCS1D01G147900 chr1A 88.372 559 18 19 857 1411 258881464 258880949 5.520000e-176 628.0
23 TraesCS1D01G147900 chr1A 79.325 919 156 26 5258 6163 258859831 258858934 1.550000e-171 614.0
24 TraesCS1D01G147900 chr1A 80.524 878 75 50 3364 4179 258875290 258874447 3.370000e-163 586.0
25 TraesCS1D01G147900 chr1A 96.708 243 8 0 1493 1735 258880954 258880712 1.010000e-108 405.0
26 TraesCS1D01G147900 chr1A 90.734 259 22 2 451 707 258882197 258881939 2.240000e-90 344.0
27 TraesCS1D01G147900 chr1A 87.967 241 27 2 1492 1731 258861865 258861626 4.950000e-72 283.0
28 TraesCS1D01G147900 chr1A 85.425 247 34 2 1167 1412 258862543 258862298 1.080000e-63 255.0
29 TraesCS1D01G147900 chr1A 91.329 173 12 1 1 170 258882751 258882579 5.060000e-57 233.0
30 TraesCS1D01G147900 chr1A 81.333 300 29 16 3069 3367 258880452 258880179 1.420000e-52 219.0
31 TraesCS1D01G147900 chr1A 94.915 118 2 1 7675 7792 258870606 258870493 1.860000e-41 182.0
32 TraesCS1D01G147900 chr4D 98.066 1086 19 2 1991 3076 509108663 509109746 0.000000e+00 1888.0
33 TraesCS1D01G147900 chr4D 95.312 256 10 1 205 458 454808029 454807774 1.010000e-108 405.0
34 TraesCS1D01G147900 chr4D 88.710 62 5 2 3261 3321 386936256 386936316 3.240000e-09 75.0
35 TraesCS1D01G147900 chr7A 85.974 1098 93 36 1990 3076 616558528 616557481 0.000000e+00 1118.0
36 TraesCS1D01G147900 chr7A 86.667 525 51 12 4536 5055 115315009 115315519 1.580000e-156 564.0
37 TraesCS1D01G147900 chr7A 82.609 115 19 1 5375 5489 65518264 65518377 5.350000e-17 100.0
38 TraesCS1D01G147900 chr7A 88.525 61 6 1 3261 3321 43930613 43930672 1.170000e-08 73.1
39 TraesCS1D01G147900 chr7A 84.211 76 8 4 3227 3300 706830156 706830083 4.200000e-08 71.3
40 TraesCS1D01G147900 chr3D 96.277 591 19 3 7793 8382 553879054 553878466 0.000000e+00 966.0
41 TraesCS1D01G147900 chr3D 95.784 593 24 1 7791 8382 443379742 443379150 0.000000e+00 955.0
42 TraesCS1D01G147900 chr3D 90.875 526 29 10 4536 5055 605997819 605997307 0.000000e+00 688.0
43 TraesCS1D01G147900 chr3D 90.114 526 32 12 4536 5055 253572897 253573408 0.000000e+00 665.0
44 TraesCS1D01G147900 chr3D 90.945 254 19 3 205 455 536025837 536025585 1.040000e-88 339.0
45 TraesCS1D01G147900 chr3D 91.071 56 5 0 3261 3316 131348941 131348886 9.020000e-10 76.8
46 TraesCS1D01G147900 chr3D 88.710 62 5 2 3261 3321 521591141 521591081 3.240000e-09 75.0
47 TraesCS1D01G147900 chr2D 95.939 591 22 2 7793 8382 571190644 571190055 0.000000e+00 957.0
48 TraesCS1D01G147900 chr2D 95.784 593 24 1 7791 8382 532458360 532457768 0.000000e+00 955.0
49 TraesCS1D01G147900 chr2D 95.770 591 24 1 7793 8382 588227939 588228529 0.000000e+00 952.0
50 TraesCS1D01G147900 chr2D 89.524 525 36 12 4536 5055 399899462 399898952 0.000000e+00 647.0
51 TraesCS1D01G147900 chr2D 93.561 264 12 3 194 455 648245359 648245099 1.020000e-103 388.0
52 TraesCS1D01G147900 chr2D 80.088 452 50 27 2644 3076 478108523 478108093 4.920000e-77 300.0
53 TraesCS1D01G147900 chr2D 84.091 264 30 9 2289 2543 478108855 478108595 2.340000e-60 244.0
54 TraesCS1D01G147900 chr2D 86.207 116 13 3 5375 5489 485991636 485991749 1.140000e-23 122.0
55 TraesCS1D01G147900 chr2D 87.097 62 6 2 6012 6071 36090977 36090916 1.510000e-07 69.4
56 TraesCS1D01G147900 chr7D 95.033 604 28 2 7781 8382 626469181 626469784 0.000000e+00 948.0
57 TraesCS1D01G147900 chr7D 91.329 519 28 9 4542 5055 84338431 84337925 0.000000e+00 693.0
58 TraesCS1D01G147900 chr7D 90.702 527 31 11 4535 5055 68433495 68432981 0.000000e+00 686.0
59 TraesCS1D01G147900 chr7D 89.122 524 37 12 4538 5055 292154885 292154376 1.190000e-177 634.0
60 TraesCS1D01G147900 chr7D 88.190 525 39 16 4536 5055 173110230 173109724 9.310000e-169 604.0
61 TraesCS1D01G147900 chr7D 96.443 253 7 1 205 455 587092710 587092458 4.680000e-112 416.0
62 TraesCS1D01G147900 chr7D 82.609 115 19 1 5375 5489 62940367 62940480 5.350000e-17 100.0
63 TraesCS1D01G147900 chr7D 82.569 109 19 0 5381 5489 62193995 62194103 6.930000e-16 97.1
64 TraesCS1D01G147900 chr7D 82.000 100 14 4 3261 3360 561829880 561829785 1.940000e-11 82.4
65 TraesCS1D01G147900 chr7D 76.871 147 20 10 3207 3342 123500570 123500713 4.200000e-08 71.3
66 TraesCS1D01G147900 chr7D 83.133 83 9 4 3261 3343 170343940 170344017 4.200000e-08 71.3
67 TraesCS1D01G147900 chr6D 95.462 595 23 3 7790 8382 448047848 448047256 0.000000e+00 946.0
68 TraesCS1D01G147900 chr6D 90.613 522 31 12 4538 5055 296757735 296758242 0.000000e+00 676.0
69 TraesCS1D01G147900 chr6D 94.253 261 12 2 197 455 16248646 16248905 6.100000e-106 396.0
70 TraesCS1D01G147900 chr6D 84.426 244 38 0 1488 1731 294177137 294176894 3.020000e-59 241.0
71 TraesCS1D01G147900 chr6A 86.737 852 68 26 2231 3076 609391165 609390353 0.000000e+00 905.0
72 TraesCS1D01G147900 chr6A 93.852 244 13 2 1990 2232 609391482 609391240 4.780000e-97 366.0
73 TraesCS1D01G147900 chr6A 92.727 165 12 0 1567 1731 426315804 426315968 1.090000e-58 239.0
74 TraesCS1D01G147900 chr4B 90.680 515 37 10 1990 2497 545061830 545062340 0.000000e+00 675.0
75 TraesCS1D01G147900 chr4B 84.897 437 36 17 2586 3018 545062399 545062809 1.680000e-111 414.0
76 TraesCS1D01G147900 chr4B 82.558 86 14 1 3261 3346 406549723 406549639 3.240000e-09 75.0
77 TraesCS1D01G147900 chrUn 90.304 526 31 12 4536 5055 68156778 68157289 0.000000e+00 671.0
78 TraesCS1D01G147900 chrUn 90.286 525 34 11 4536 5055 102556167 102556679 0.000000e+00 671.0
79 TraesCS1D01G147900 chrUn 94.585 277 13 2 182 456 34184481 34184757 2.160000e-115 427.0
80 TraesCS1D01G147900 chr5D 91.803 488 23 10 4528 5010 494178755 494178280 0.000000e+00 664.0
81 TraesCS1D01G147900 chr5D 83.268 508 49 22 2582 3076 448132502 448132018 1.290000e-117 435.0
82 TraesCS1D01G147900 chr5D 80.928 582 76 21 1991 2543 448133070 448132495 2.160000e-115 427.0
83 TraesCS1D01G147900 chr5D 88.333 60 7 0 3261 3320 7883773 7883714 1.170000e-08 73.1
84 TraesCS1D01G147900 chr2B 89.118 533 42 14 1989 2511 175452965 175452439 0.000000e+00 649.0
85 TraesCS1D01G147900 chr2B 83.567 499 44 20 2583 3076 175452395 175451930 4.650000e-117 433.0
86 TraesCS1D01G147900 chr2B 84.483 116 15 3 5375 5489 570896666 570896779 2.470000e-20 111.0
87 TraesCS1D01G147900 chr5B 89.374 527 38 11 4535 5055 612295203 612294689 0.000000e+00 647.0
88 TraesCS1D01G147900 chr5B 89.143 525 39 11 4537 5055 233480824 233480312 9.180000e-179 638.0
89 TraesCS1D01G147900 chr5B 85.439 570 50 19 1991 2535 419298432 419298993 5.680000e-156 562.0
90 TraesCS1D01G147900 chr5B 81.944 504 51 17 2591 3076 443903828 443903347 2.840000e-104 390.0
91 TraesCS1D01G147900 chr5B 87.240 337 32 10 2178 2511 443904208 443903880 2.860000e-99 374.0
92 TraesCS1D01G147900 chr5B 78.856 402 33 27 2602 2974 419299023 419299401 3.040000e-54 224.0
93 TraesCS1D01G147900 chr5B 84.979 233 16 11 2602 2828 421456653 421456434 1.420000e-52 219.0
94 TraesCS1D01G147900 chr5B 85.976 164 15 5 2813 2974 419300311 419300468 1.450000e-37 169.0
95 TraesCS1D01G147900 chr5B 94.624 93 5 0 2882 2974 419299837 419299929 2.440000e-30 145.0
96 TraesCS1D01G147900 chr5B 85.593 118 16 1 5986 6103 641550525 641550641 1.140000e-23 122.0
97 TraesCS1D01G147900 chr5B 90.123 81 8 0 2960 3040 419299495 419299575 1.150000e-18 106.0
98 TraesCS1D01G147900 chr5B 90.123 81 8 0 2960 3040 419300023 419300103 1.150000e-18 106.0
99 TraesCS1D01G147900 chr5B 88.889 81 9 0 2960 3040 419300483 419300563 5.350000e-17 100.0
100 TraesCS1D01G147900 chr5B 97.500 40 1 0 2960 2999 419299415 419299454 1.510000e-07 69.4
101 TraesCS1D01G147900 chr5B 90.566 53 4 1 3249 3300 426998049 426997997 1.510000e-07 69.4
102 TraesCS1D01G147900 chr5B 86.885 61 7 1 3261 3321 282846636 282846695 5.430000e-07 67.6
103 TraesCS1D01G147900 chr5B 94.286 35 2 0 3273 3307 13172711 13172677 4.000000e-03 54.7
104 TraesCS1D01G147900 chr6B 87.285 582 48 20 1986 2544 712628534 712627956 7.090000e-180 641.0
105 TraesCS1D01G147900 chr6B 82.276 457 37 18 2591 3029 712627955 712627525 1.030000e-93 355.0
106 TraesCS1D01G147900 chr6B 92.727 165 12 0 1567 1731 459059941 459059777 1.090000e-58 239.0
107 TraesCS1D01G147900 chr6B 90.566 53 4 1 3249 3300 595947559 595947611 1.510000e-07 69.4
108 TraesCS1D01G147900 chr3A 89.883 514 28 13 4546 5055 533991652 533991159 2.550000e-179 640.0
109 TraesCS1D01G147900 chr3A 93.704 270 16 1 186 454 593998038 593997769 3.640000e-108 403.0
110 TraesCS1D01G147900 chr3A 92.701 274 17 2 186 456 16659200 16659473 7.890000e-105 392.0
111 TraesCS1D01G147900 chr7B 88.805 527 37 11 4535 5055 680364579 680365089 1.990000e-175 627.0
112 TraesCS1D01G147900 chr7B 90.282 319 28 2 1991 2309 417552800 417553115 1.680000e-111 414.0
113 TraesCS1D01G147900 chr7B 84.541 207 21 8 2581 2780 417553354 417553556 2.390000e-45 195.0
114 TraesCS1D01G147900 chr7B 87.162 148 17 2 2791 2936 417555736 417555883 5.200000e-37 167.0
115 TraesCS1D01G147900 chr7B 88.525 61 6 1 3261 3321 138036573 138036514 1.170000e-08 73.1
116 TraesCS1D01G147900 chr7B 86.667 60 7 1 3261 3319 723756121 723756062 1.950000e-06 65.8
117 TraesCS1D01G147900 chr4A 80.969 557 94 9 1181 1729 599944436 599944988 1.670000e-116 431.0
118 TraesCS1D01G147900 chr4A 94.909 275 11 3 184 456 735569923 735569650 2.160000e-115 427.0
119 TraesCS1D01G147900 chr4A 80.081 246 49 0 5243 5488 599945129 599945374 5.170000e-42 183.0
120 TraesCS1D01G147900 chr4A 80.603 232 44 1 5258 5488 599947473 599947242 2.400000e-40 178.0
121 TraesCS1D01G147900 chr4A 73.511 487 108 19 6922 7399 599919707 599920181 1.870000e-36 165.0
122 TraesCS1D01G147900 chr2A 84.318 440 39 19 2644 3076 11011029 11011445 3.640000e-108 403.0
123 TraesCS1D01G147900 chr2A 80.105 382 76 0 5577 5958 2228998 2229379 1.380000e-72 285.0
124 TraesCS1D01G147900 chr2A 84.064 251 40 0 1479 1729 2227483 2227733 8.410000e-60 243.0
125 TraesCS1D01G147900 chr2A 79.237 236 47 2 5258 5492 2228500 2228734 6.730000e-36 163.0
126 TraesCS1D01G147900 chr3B 89.083 229 23 2 1984 2212 637032671 637032445 4.950000e-72 283.0
127 TraesCS1D01G147900 chr3B 81.081 370 49 16 2719 3083 22170387 22170034 8.290000e-70 276.0
128 TraesCS1D01G147900 chr3B 87.054 224 22 6 2815 3036 637027048 637026830 6.500000e-61 246.0
129 TraesCS1D01G147900 chr3B 85.593 118 16 1 5986 6103 526242048 526242164 1.140000e-23 122.0
130 TraesCS1D01G147900 chr5A 90.566 53 4 1 3249 3300 552720042 552719990 1.510000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G147900 chr1D 203914221 203922602 8381 True 15479.000000 15479 100.000000 1 8382 1 chr1D.!!$R2 8381
1 TraesCS1D01G147900 chr1D 433288867 433289457 590 True 979.000000 979 96.616000 7793 8382 1 chr1D.!!$R3 589
2 TraesCS1D01G147900 chr1D 49745264 49745854 590 True 952.000000 952 95.770000 7793 8382 1 chr1D.!!$R1 589
3 TraesCS1D01G147900 chr1D 203867962 203868931 969 True 360.500000 499 83.213500 5258 6150 2 chr1D.!!$R4 892
4 TraesCS1D01G147900 chr1D 203873310 203874089 779 True 226.000000 322 88.277000 1001 1732 3 chr1D.!!$R5 731
5 TraesCS1D01G147900 chr1B 298161470 298167432 5962 True 1347.200000 3339 88.058600 490 7792 5 chr1B.!!$R4 7302
6 TraesCS1D01G147900 chr1B 298074704 298075673 969 True 369.000000 499 83.862500 5258 6150 2 chr1B.!!$R2 892
7 TraesCS1D01G147900 chr1B 298088672 298089403 731 True 228.333333 320 90.442667 1001 1731 3 chr1B.!!$R3 730
8 TraesCS1D01G147900 chr1A 258870493 258875290 4797 True 1100.500000 1951 89.977000 3364 7792 4 chr1A.!!$R2 4428
9 TraesCS1D01G147900 chr1A 258858934 258862543 3609 True 384.000000 614 84.239000 1167 6163 3 chr1A.!!$R1 4996
10 TraesCS1D01G147900 chr1A 258880179 258882751 2572 True 365.800000 628 89.695200 1 3367 5 chr1A.!!$R3 3366
11 TraesCS1D01G147900 chr4D 509108663 509109746 1083 False 1888.000000 1888 98.066000 1991 3076 1 chr4D.!!$F2 1085
12 TraesCS1D01G147900 chr7A 616557481 616558528 1047 True 1118.000000 1118 85.974000 1990 3076 1 chr7A.!!$R1 1086
13 TraesCS1D01G147900 chr7A 115315009 115315519 510 False 564.000000 564 86.667000 4536 5055 1 chr7A.!!$F3 519
14 TraesCS1D01G147900 chr3D 553878466 553879054 588 True 966.000000 966 96.277000 7793 8382 1 chr3D.!!$R5 589
15 TraesCS1D01G147900 chr3D 443379150 443379742 592 True 955.000000 955 95.784000 7791 8382 1 chr3D.!!$R2 591
16 TraesCS1D01G147900 chr3D 605997307 605997819 512 True 688.000000 688 90.875000 4536 5055 1 chr3D.!!$R6 519
17 TraesCS1D01G147900 chr3D 253572897 253573408 511 False 665.000000 665 90.114000 4536 5055 1 chr3D.!!$F1 519
18 TraesCS1D01G147900 chr2D 571190055 571190644 589 True 957.000000 957 95.939000 7793 8382 1 chr2D.!!$R4 589
19 TraesCS1D01G147900 chr2D 532457768 532458360 592 True 955.000000 955 95.784000 7791 8382 1 chr2D.!!$R3 591
20 TraesCS1D01G147900 chr2D 588227939 588228529 590 False 952.000000 952 95.770000 7793 8382 1 chr2D.!!$F2 589
21 TraesCS1D01G147900 chr2D 399898952 399899462 510 True 647.000000 647 89.524000 4536 5055 1 chr2D.!!$R2 519
22 TraesCS1D01G147900 chr2D 478108093 478108855 762 True 272.000000 300 82.089500 2289 3076 2 chr2D.!!$R6 787
23 TraesCS1D01G147900 chr7D 626469181 626469784 603 False 948.000000 948 95.033000 7781 8382 1 chr7D.!!$F5 601
24 TraesCS1D01G147900 chr7D 84337925 84338431 506 True 693.000000 693 91.329000 4542 5055 1 chr7D.!!$R2 513
25 TraesCS1D01G147900 chr7D 68432981 68433495 514 True 686.000000 686 90.702000 4535 5055 1 chr7D.!!$R1 520
26 TraesCS1D01G147900 chr7D 292154376 292154885 509 True 634.000000 634 89.122000 4538 5055 1 chr7D.!!$R4 517
27 TraesCS1D01G147900 chr7D 173109724 173110230 506 True 604.000000 604 88.190000 4536 5055 1 chr7D.!!$R3 519
28 TraesCS1D01G147900 chr6D 448047256 448047848 592 True 946.000000 946 95.462000 7790 8382 1 chr6D.!!$R2 592
29 TraesCS1D01G147900 chr6D 296757735 296758242 507 False 676.000000 676 90.613000 4538 5055 1 chr6D.!!$F2 517
30 TraesCS1D01G147900 chr6A 609390353 609391482 1129 True 635.500000 905 90.294500 1990 3076 2 chr6A.!!$R1 1086
31 TraesCS1D01G147900 chr4B 545061830 545062809 979 False 544.500000 675 87.788500 1990 3018 2 chr4B.!!$F1 1028
32 TraesCS1D01G147900 chrUn 68156778 68157289 511 False 671.000000 671 90.304000 4536 5055 1 chrUn.!!$F2 519
33 TraesCS1D01G147900 chrUn 102556167 102556679 512 False 671.000000 671 90.286000 4536 5055 1 chrUn.!!$F3 519
34 TraesCS1D01G147900 chr5D 448132018 448133070 1052 True 431.000000 435 82.098000 1991 3076 2 chr5D.!!$R3 1085
35 TraesCS1D01G147900 chr2B 175451930 175452965 1035 True 541.000000 649 86.342500 1989 3076 2 chr2B.!!$R1 1087
36 TraesCS1D01G147900 chr5B 612294689 612295203 514 True 647.000000 647 89.374000 4535 5055 1 chr5B.!!$R5 520
37 TraesCS1D01G147900 chr5B 233480312 233480824 512 True 638.000000 638 89.143000 4537 5055 1 chr5B.!!$R2 518
38 TraesCS1D01G147900 chr5B 443903347 443904208 861 True 382.000000 390 84.592000 2178 3076 2 chr5B.!!$R6 898
39 TraesCS1D01G147900 chr6B 712627525 712628534 1009 True 498.000000 641 84.780500 1986 3029 2 chr6B.!!$R2 1043
40 TraesCS1D01G147900 chr7B 680364579 680365089 510 False 627.000000 627 88.805000 4535 5055 1 chr7B.!!$F1 520
41 TraesCS1D01G147900 chr7B 417552800 417555883 3083 False 258.666667 414 87.328333 1991 2936 3 chr7B.!!$F2 945
42 TraesCS1D01G147900 chr4A 599944436 599945374 938 False 307.000000 431 80.525000 1181 5488 2 chr4A.!!$F2 4307
43 TraesCS1D01G147900 chr2A 2227483 2229379 1896 False 230.333333 285 81.135333 1479 5958 3 chr2A.!!$F2 4479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.179045 ACGCCATCATGTAGAAGCCC 60.179 55.000 0.00 0.00 0.00 5.19 F
588 960 0.319383 CCCCAGAGATCAGAATCGCG 60.319 60.000 0.00 0.00 36.86 5.87 F
1774 2902 0.462789 ACGTGGTCTTTCTTCCGTGT 59.537 50.000 0.00 0.00 0.00 4.49 F
1810 2938 1.133982 CAGTACACTCGCAGCAGAGAT 59.866 52.381 17.64 9.72 40.57 2.75 F
3255 8459 0.807496 AAGCTCAAGATCAAAGCGGC 59.193 50.000 0.00 0.00 40.95 6.53 F
4106 9811 0.388649 GTCAGGACTGTGGTGCTACG 60.389 60.000 0.00 0.00 42.19 3.51 F
4831 10998 0.109226 CTCCCTGAACTCCGACGAAC 60.109 60.000 0.00 0.00 0.00 3.95 F
5281 11457 0.247655 CCGTGATTCATCCGTTTGCG 60.248 55.000 0.00 0.00 37.95 4.85 F
6711 13377 0.249699 TCACGTGGCGAGACAATGTT 60.250 50.000 17.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 2915 0.171231 CTGCTGCGAGTGTACTGCTA 59.829 55.000 0.00 0.00 0.00 3.49 R
1790 2918 0.523519 TCTCTGCTGCGAGTGTACTG 59.476 55.000 16.79 0.00 32.83 2.74 R
3253 8457 0.393132 GTTACAAGCTGAGAGGGGCC 60.393 60.000 0.00 0.00 0.00 5.80 R
3629 9258 0.393537 CCGAGGGCATGCTTCTTCTT 60.394 55.000 18.92 0.00 0.00 2.52 R
4831 10998 0.247735 CGCTACTCACTCCGACGAAG 60.248 60.000 0.00 0.00 0.00 3.79 R
5311 11487 2.031516 GCAGGCGATCATCGGGATG 61.032 63.158 9.59 2.21 40.84 3.51 R
5865 12244 2.762535 ACCAAGAACCATACGTCCAG 57.237 50.000 0.00 0.00 0.00 3.86 R
7146 13815 0.679505 CAGAGTCGTGGTTCAGGGAA 59.320 55.000 0.00 0.00 0.00 3.97 R
7724 14584 0.171679 TACTACCGTCGGCACATGTG 59.828 55.000 21.83 21.83 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.334105 CCTCTTTCACCTTTGACATGTAACG 60.334 44.000 0.00 0.00 0.00 3.18
40 41 5.464389 ACCTTTGACATGTAACGACTGTAAC 59.536 40.000 0.00 0.00 0.00 2.50
71 72 0.252197 AACCTCCTTACCACGCCATC 59.748 55.000 0.00 0.00 0.00 3.51
72 73 0.907704 ACCTCCTTACCACGCCATCA 60.908 55.000 0.00 0.00 0.00 3.07
83 84 0.179045 ACGCCATCATGTAGAAGCCC 60.179 55.000 0.00 0.00 0.00 5.19
126 130 1.958288 ACTGAGCCTCTGGTACCATT 58.042 50.000 16.75 0.00 0.00 3.16
127 131 3.116096 ACTGAGCCTCTGGTACCATTA 57.884 47.619 16.75 5.96 0.00 1.90
135 139 3.517901 CCTCTGGTACCATTAGTTCACCA 59.482 47.826 16.75 0.00 37.68 4.17
148 152 7.041098 CCATTAGTTCACCAGGCAGATAAATAC 60.041 40.741 0.00 0.00 0.00 1.89
155 159 4.591498 ACCAGGCAGATAAATACCGTATGA 59.409 41.667 0.00 0.00 0.00 2.15
159 163 5.989777 AGGCAGATAAATACCGTATGAACAC 59.010 40.000 0.00 0.00 0.00 3.32
161 165 5.178809 GCAGATAAATACCGTATGAACACCC 59.821 44.000 0.00 0.00 0.00 4.61
184 555 5.126707 CCACTAGTAACTTGTAAGGGTCGAT 59.873 44.000 0.00 0.00 0.00 3.59
185 556 6.350780 CCACTAGTAACTTGTAAGGGTCGATT 60.351 42.308 0.00 0.00 0.00 3.34
186 557 7.148018 CCACTAGTAACTTGTAAGGGTCGATTA 60.148 40.741 0.00 0.00 0.00 1.75
187 558 8.246180 CACTAGTAACTTGTAAGGGTCGATTAA 58.754 37.037 0.00 0.00 0.00 1.40
188 559 8.465201 ACTAGTAACTTGTAAGGGTCGATTAAG 58.535 37.037 0.00 0.00 0.00 1.85
189 560 7.472334 AGTAACTTGTAAGGGTCGATTAAGA 57.528 36.000 0.00 0.00 0.00 2.10
190 561 7.545489 AGTAACTTGTAAGGGTCGATTAAGAG 58.455 38.462 0.00 0.00 0.00 2.85
191 562 5.340439 ACTTGTAAGGGTCGATTAAGAGG 57.660 43.478 0.00 0.00 0.00 3.69
192 563 4.161754 ACTTGTAAGGGTCGATTAAGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
193 564 3.716431 TGTAAGGGTCGATTAAGAGGGT 58.284 45.455 0.00 0.00 0.00 4.34
194 565 3.449737 TGTAAGGGTCGATTAAGAGGGTG 59.550 47.826 0.00 0.00 0.00 4.61
195 566 2.249309 AGGGTCGATTAAGAGGGTGT 57.751 50.000 0.00 0.00 0.00 4.16
196 567 2.547990 AGGGTCGATTAAGAGGGTGTT 58.452 47.619 0.00 0.00 0.00 3.32
197 568 2.910977 AGGGTCGATTAAGAGGGTGTTT 59.089 45.455 0.00 0.00 0.00 2.83
198 569 3.007635 GGGTCGATTAAGAGGGTGTTTG 58.992 50.000 0.00 0.00 0.00 2.93
199 570 3.558533 GGGTCGATTAAGAGGGTGTTTGT 60.559 47.826 0.00 0.00 0.00 2.83
200 571 4.070009 GGTCGATTAAGAGGGTGTTTGTT 58.930 43.478 0.00 0.00 0.00 2.83
201 572 4.517832 GGTCGATTAAGAGGGTGTTTGTTT 59.482 41.667 0.00 0.00 0.00 2.83
202 573 5.334646 GGTCGATTAAGAGGGTGTTTGTTTC 60.335 44.000 0.00 0.00 0.00 2.78
203 574 4.758165 TCGATTAAGAGGGTGTTTGTTTCC 59.242 41.667 0.00 0.00 0.00 3.13
204 575 4.517453 CGATTAAGAGGGTGTTTGTTTCCA 59.483 41.667 0.00 0.00 0.00 3.53
205 576 5.334879 CGATTAAGAGGGTGTTTGTTTCCAG 60.335 44.000 0.00 0.00 0.00 3.86
206 577 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
207 578 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
208 579 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
209 580 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
210 581 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
211 582 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
212 583 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
213 584 3.955551 GGTGTTTGTTTCCAGGGACTTAA 59.044 43.478 0.00 0.00 34.60 1.85
214 585 4.403113 GGTGTTTGTTTCCAGGGACTTAAA 59.597 41.667 0.00 0.00 34.60 1.52
215 586 5.105269 GGTGTTTGTTTCCAGGGACTTAAAA 60.105 40.000 0.00 0.00 34.60 1.52
216 587 6.399743 GTGTTTGTTTCCAGGGACTTAAAAA 58.600 36.000 0.00 0.00 34.60 1.94
240 611 9.682465 AAAAGTCCTTATAAGTCCCATCTAAAC 57.318 33.333 11.50 0.00 0.00 2.01
241 612 7.376335 AGTCCTTATAAGTCCCATCTAAACC 57.624 40.000 11.50 0.00 0.00 3.27
242 613 6.906901 AGTCCTTATAAGTCCCATCTAAACCA 59.093 38.462 11.50 0.00 0.00 3.67
243 614 7.404980 AGTCCTTATAAGTCCCATCTAAACCAA 59.595 37.037 11.50 0.00 0.00 3.67
244 615 8.050930 GTCCTTATAAGTCCCATCTAAACCAAA 58.949 37.037 11.50 0.00 0.00 3.28
245 616 8.050930 TCCTTATAAGTCCCATCTAAACCAAAC 58.949 37.037 11.50 0.00 0.00 2.93
246 617 7.832187 CCTTATAAGTCCCATCTAAACCAAACA 59.168 37.037 11.50 0.00 0.00 2.83
247 618 8.801882 TTATAAGTCCCATCTAAACCAAACAG 57.198 34.615 0.00 0.00 0.00 3.16
248 619 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
249 620 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
250 621 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
251 622 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
252 623 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
253 624 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
254 625 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
256 627 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
257 628 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
258 629 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
259 630 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
260 631 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
261 632 4.695606 ACCAAACAGGAGGGACTTATAGA 58.304 43.478 0.00 0.00 41.55 1.98
262 633 4.717280 ACCAAACAGGAGGGACTTATAGAG 59.283 45.833 0.00 0.00 41.55 2.43
263 634 4.962995 CCAAACAGGAGGGACTTATAGAGA 59.037 45.833 0.00 0.00 41.55 3.10
264 635 5.163395 CCAAACAGGAGGGACTTATAGAGAC 60.163 48.000 0.00 0.00 41.55 3.36
265 636 5.475398 AACAGGAGGGACTTATAGAGACT 57.525 43.478 0.00 0.00 41.55 3.24
266 637 5.475398 ACAGGAGGGACTTATAGAGACTT 57.525 43.478 0.00 0.00 41.55 3.01
267 638 6.593759 ACAGGAGGGACTTATAGAGACTTA 57.406 41.667 0.00 0.00 41.55 2.24
268 639 6.982899 ACAGGAGGGACTTATAGAGACTTAA 58.017 40.000 0.00 0.00 41.55 1.85
269 640 7.420029 ACAGGAGGGACTTATAGAGACTTAAA 58.580 38.462 0.00 0.00 41.55 1.52
270 641 7.562088 ACAGGAGGGACTTATAGAGACTTAAAG 59.438 40.741 0.00 0.00 41.55 1.85
271 642 7.562088 CAGGAGGGACTTATAGAGACTTAAAGT 59.438 40.741 0.00 0.00 41.55 2.66
272 643 7.562088 AGGAGGGACTTATAGAGACTTAAAGTG 59.438 40.741 0.00 0.00 41.55 3.16
273 644 7.201929 GGAGGGACTTATAGAGACTTAAAGTGG 60.202 44.444 0.00 0.00 41.55 4.00
274 645 6.612049 AGGGACTTATAGAGACTTAAAGTGGG 59.388 42.308 0.00 0.00 27.25 4.61
275 646 6.282167 GGACTTATAGAGACTTAAAGTGGGC 58.718 44.000 0.00 0.00 30.83 5.36
276 647 6.127140 GGACTTATAGAGACTTAAAGTGGGCA 60.127 42.308 0.00 0.00 30.83 5.36
277 648 7.419172 GGACTTATAGAGACTTAAAGTGGGCAT 60.419 40.741 0.00 0.00 30.83 4.40
278 649 7.862675 ACTTATAGAGACTTAAAGTGGGCATT 58.137 34.615 0.00 0.00 0.00 3.56
279 650 8.329502 ACTTATAGAGACTTAAAGTGGGCATTT 58.670 33.333 0.00 0.00 0.00 2.32
280 651 8.506168 TTATAGAGACTTAAAGTGGGCATTTG 57.494 34.615 0.00 0.00 0.00 2.32
281 652 4.082125 AGAGACTTAAAGTGGGCATTTGG 58.918 43.478 0.00 0.00 0.00 3.28
282 653 3.165071 AGACTTAAAGTGGGCATTTGGG 58.835 45.455 0.00 0.00 0.00 4.12
283 654 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
284 655 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
285 656 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
286 657 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
287 658 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
288 659 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
289 660 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
290 661 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
291 662 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
292 663 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
293 664 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
294 665 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
295 666 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
310 681 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
311 682 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
312 683 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
313 684 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
314 685 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
315 686 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
316 687 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
317 688 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
318 689 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
319 690 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
320 691 4.156477 CTCTCAAGGAGGGACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
321 692 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
322 693 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
323 694 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
324 695 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
325 696 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
326 697 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
327 698 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
328 699 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
329 700 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
330 701 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
331 702 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
332 703 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
333 704 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
334 705 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
343 714 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
344 715 9.708092 GGGACTTATAGTTGTAATATGGTCTTC 57.292 37.037 0.00 0.00 0.00 2.87
351 722 7.973048 AGTTGTAATATGGTCTTCTAGTCCA 57.027 36.000 0.00 0.00 37.79 4.02
352 723 8.554490 AGTTGTAATATGGTCTTCTAGTCCAT 57.446 34.615 9.73 9.73 44.36 3.41
353 724 8.424918 AGTTGTAATATGGTCTTCTAGTCCATG 58.575 37.037 13.41 0.00 42.62 3.66
354 725 7.914427 TGTAATATGGTCTTCTAGTCCATGT 57.086 36.000 13.41 6.18 42.62 3.21
355 726 8.319057 TGTAATATGGTCTTCTAGTCCATGTT 57.681 34.615 15.13 15.13 42.62 2.71
356 727 9.429109 TGTAATATGGTCTTCTAGTCCATGTTA 57.571 33.333 13.41 13.58 42.62 2.41
359 730 6.875972 ATGGTCTTCTAGTCCATGTTAAGT 57.124 37.500 4.95 0.00 41.46 2.24
360 731 6.282199 TGGTCTTCTAGTCCATGTTAAGTC 57.718 41.667 0.00 0.00 28.55 3.01
361 732 5.187186 TGGTCTTCTAGTCCATGTTAAGTCC 59.813 44.000 0.00 0.00 28.55 3.85
362 733 5.395435 GGTCTTCTAGTCCATGTTAAGTCCC 60.395 48.000 0.00 0.00 0.00 4.46
363 734 5.187186 GTCTTCTAGTCCATGTTAAGTCCCA 59.813 44.000 0.00 0.00 0.00 4.37
364 735 5.422331 TCTTCTAGTCCATGTTAAGTCCCAG 59.578 44.000 0.00 0.00 0.00 4.45
365 736 4.030913 TCTAGTCCATGTTAAGTCCCAGG 58.969 47.826 0.00 0.00 0.00 4.45
366 737 2.915869 AGTCCATGTTAAGTCCCAGGA 58.084 47.619 0.00 0.00 0.00 3.86
367 738 3.256704 AGTCCATGTTAAGTCCCAGGAA 58.743 45.455 0.00 0.00 0.00 3.36
368 739 3.009143 AGTCCATGTTAAGTCCCAGGAAC 59.991 47.826 0.00 0.00 0.00 3.62
369 740 2.307686 TCCATGTTAAGTCCCAGGAACC 59.692 50.000 0.00 0.00 0.00 3.62
370 741 2.041081 CCATGTTAAGTCCCAGGAACCA 59.959 50.000 0.00 0.00 0.00 3.67
371 742 3.499563 CCATGTTAAGTCCCAGGAACCAA 60.500 47.826 0.00 0.00 0.00 3.67
372 743 3.955524 TGTTAAGTCCCAGGAACCAAA 57.044 42.857 0.00 0.00 0.00 3.28
373 744 3.558033 TGTTAAGTCCCAGGAACCAAAC 58.442 45.455 0.00 0.00 0.00 2.93
374 745 3.053544 TGTTAAGTCCCAGGAACCAAACA 60.054 43.478 0.00 0.00 0.00 2.83
375 746 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
376 747 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
392 763 7.668525 CCAAACAGGTAGGTACTTTTTAGAG 57.331 40.000 0.00 0.00 41.75 2.43
393 764 7.447594 CCAAACAGGTAGGTACTTTTTAGAGA 58.552 38.462 0.00 0.00 41.75 3.10
394 765 7.387122 CCAAACAGGTAGGTACTTTTTAGAGAC 59.613 40.741 0.00 0.00 41.75 3.36
395 766 7.852550 AACAGGTAGGTACTTTTTAGAGACT 57.147 36.000 0.00 0.00 41.75 3.24
396 767 7.852550 ACAGGTAGGTACTTTTTAGAGACTT 57.147 36.000 0.00 0.00 41.75 3.01
397 768 7.668492 ACAGGTAGGTACTTTTTAGAGACTTG 58.332 38.462 0.00 0.00 41.75 3.16
398 769 7.508296 ACAGGTAGGTACTTTTTAGAGACTTGA 59.492 37.037 0.00 0.00 41.75 3.02
399 770 8.030106 CAGGTAGGTACTTTTTAGAGACTTGAG 58.970 40.741 0.00 0.00 41.75 3.02
400 771 7.949006 AGGTAGGTACTTTTTAGAGACTTGAGA 59.051 37.037 0.00 0.00 41.75 3.27
401 772 8.028354 GGTAGGTACTTTTTAGAGACTTGAGAC 58.972 40.741 0.00 0.00 41.75 3.36
402 773 7.842887 AGGTACTTTTTAGAGACTTGAGACT 57.157 36.000 0.00 0.00 27.25 3.24
403 774 8.252624 AGGTACTTTTTAGAGACTTGAGACTT 57.747 34.615 0.00 0.00 27.25 3.01
404 775 9.364653 AGGTACTTTTTAGAGACTTGAGACTTA 57.635 33.333 0.00 0.00 27.25 2.24
413 784 7.176589 AGAGACTTGAGACTTATAAGTTGGG 57.823 40.000 18.96 10.37 39.88 4.12
414 785 6.954684 AGAGACTTGAGACTTATAAGTTGGGA 59.045 38.462 18.96 6.15 39.88 4.37
415 786 6.937392 AGACTTGAGACTTATAAGTTGGGAC 58.063 40.000 18.96 6.39 39.88 4.46
416 787 6.497259 AGACTTGAGACTTATAAGTTGGGACA 59.503 38.462 18.96 11.68 39.88 4.02
442 813 8.990163 AAAAAGTCTTAGGTCTTATGAACCAA 57.010 30.769 0.00 0.00 0.00 3.67
443 814 8.990163 AAAAGTCTTAGGTCTTATGAACCAAA 57.010 30.769 0.00 0.00 0.00 3.28
444 815 7.981102 AAGTCTTAGGTCTTATGAACCAAAC 57.019 36.000 0.00 0.00 0.00 2.93
445 816 7.074653 AGTCTTAGGTCTTATGAACCAAACA 57.925 36.000 0.00 0.00 0.00 2.83
446 817 7.690256 AGTCTTAGGTCTTATGAACCAAACAT 58.310 34.615 0.00 0.00 0.00 2.71
447 818 7.607991 AGTCTTAGGTCTTATGAACCAAACATG 59.392 37.037 0.00 0.00 0.00 3.21
448 819 6.884295 TCTTAGGTCTTATGAACCAAACATGG 59.116 38.462 0.00 0.00 0.00 3.66
449 820 3.763897 AGGTCTTATGAACCAAACATGGC 59.236 43.478 0.00 0.00 0.00 4.40
530 902 0.680061 AGAACGGAGAGTTGGTGTCC 59.320 55.000 0.00 0.00 44.35 4.02
555 927 1.798813 GTGGAGATCGTGTGAACCAAC 59.201 52.381 0.00 0.00 31.32 3.77
560 932 3.589988 AGATCGTGTGAACCAACTCATC 58.410 45.455 0.00 0.00 0.00 2.92
588 960 0.319383 CCCCAGAGATCAGAATCGCG 60.319 60.000 0.00 0.00 36.86 5.87
597 969 2.108514 CAGAATCGCGTGTGCCCAT 61.109 57.895 5.77 0.00 38.08 4.00
606 978 3.349304 TGTGCCCATCCCTGCCAT 61.349 61.111 0.00 0.00 0.00 4.40
638 1010 1.957877 GAAAATGGTTCGGGGTTCACA 59.042 47.619 0.00 0.00 0.00 3.58
651 1023 4.457603 CGGGGTTCACATATGTTCAAAAGA 59.542 41.667 5.37 0.00 0.00 2.52
714 1105 4.094830 ACACGGTAAAAGGAAATCCAGT 57.905 40.909 1.67 0.00 38.89 4.00
719 1110 5.474532 ACGGTAAAAGGAAATCCAGTAAACC 59.525 40.000 1.67 2.26 38.89 3.27
757 1251 2.505866 GCGTTTGCAAAATCTACCTCG 58.494 47.619 14.67 11.51 42.15 4.63
766 1261 0.739561 AATCTACCTCGACGGCAGAC 59.260 55.000 6.12 0.00 38.01 3.51
771 1266 1.179814 ACCTCGACGGCAGACTTTCT 61.180 55.000 0.00 0.00 35.61 2.52
772 1267 0.809385 CCTCGACGGCAGACTTTCTA 59.191 55.000 0.00 0.00 0.00 2.10
774 1269 2.251893 CTCGACGGCAGACTTTCTAAC 58.748 52.381 0.00 0.00 0.00 2.34
775 1270 1.610038 TCGACGGCAGACTTTCTAACA 59.390 47.619 0.00 0.00 0.00 2.41
783 1280 5.230182 GGCAGACTTTCTAACAAAAATGGG 58.770 41.667 0.00 0.00 0.00 4.00
855 1572 0.956633 CCTGTCCCATATGCACATGC 59.043 55.000 0.00 0.00 42.50 4.06
905 1622 3.982058 CCGAGCCGAGTCTATAAATTGAC 59.018 47.826 0.00 0.00 33.64 3.18
913 1630 4.950050 AGTCTATAAATTGACGGAGCTGG 58.050 43.478 0.00 0.00 37.56 4.85
1104 1834 0.528466 CACCATCGCGTGCACTCTAT 60.528 55.000 16.19 0.99 0.00 1.98
1105 1835 1.029681 ACCATCGCGTGCACTCTATA 58.970 50.000 16.19 0.00 0.00 1.31
1106 1836 1.269102 ACCATCGCGTGCACTCTATAC 60.269 52.381 16.19 0.00 0.00 1.47
1112 1842 2.656085 GCGTGCACTCTATACAGCTAG 58.344 52.381 16.19 0.00 0.00 3.42
1113 1843 2.656085 CGTGCACTCTATACAGCTAGC 58.344 52.381 16.19 6.62 0.00 3.42
1115 1845 3.498777 CGTGCACTCTATACAGCTAGCTA 59.501 47.826 18.86 2.62 0.00 3.32
1116 1846 4.023963 CGTGCACTCTATACAGCTAGCTAA 60.024 45.833 18.86 9.30 0.00 3.09
1120 1850 7.753132 GTGCACTCTATACAGCTAGCTAATTAG 59.247 40.741 18.86 16.83 0.00 1.73
1145 1876 6.032956 AGTGTAATCTATCGTGTCCAAACA 57.967 37.500 0.00 0.00 0.00 2.83
1158 1889 4.097892 GTGTCCAAACAAACTGACCAATCT 59.902 41.667 0.00 0.00 37.08 2.40
1435 2172 1.078848 CCCTTTGTCCTCTCGCTGG 60.079 63.158 0.00 0.00 0.00 4.85
1436 2173 1.743252 CCTTTGTCCTCTCGCTGGC 60.743 63.158 0.00 0.00 0.00 4.85
1474 2211 2.223377 GCCGACGTGAATGAAAAGAACT 59.777 45.455 0.00 0.00 0.00 3.01
1475 2212 3.799035 CCGACGTGAATGAAAAGAACTG 58.201 45.455 0.00 0.00 0.00 3.16
1476 2213 3.247648 CCGACGTGAATGAAAAGAACTGT 59.752 43.478 0.00 0.00 0.00 3.55
1477 2214 4.203828 CGACGTGAATGAAAAGAACTGTG 58.796 43.478 0.00 0.00 0.00 3.66
1478 2215 3.952535 ACGTGAATGAAAAGAACTGTGC 58.047 40.909 0.00 0.00 0.00 4.57
1479 2216 2.966708 CGTGAATGAAAAGAACTGTGCG 59.033 45.455 0.00 0.00 0.00 5.34
1480 2217 3.546020 CGTGAATGAAAAGAACTGTGCGT 60.546 43.478 0.00 0.00 0.00 5.24
1482 2219 2.405892 ATGAAAAGAACTGTGCGTGC 57.594 45.000 0.00 0.00 0.00 5.34
1745 2873 5.292834 CACCTGTAAGTATGCAACTCATCAG 59.707 44.000 0.00 5.96 37.50 2.90
1748 2876 5.419542 TGTAAGTATGCAACTCATCAGGAC 58.580 41.667 0.00 0.00 37.50 3.85
1774 2902 0.462789 ACGTGGTCTTTCTTCCGTGT 59.537 50.000 0.00 0.00 0.00 4.49
1778 2906 3.660865 GTGGTCTTTCTTCCGTGTATGT 58.339 45.455 0.00 0.00 0.00 2.29
1779 2907 3.678548 GTGGTCTTTCTTCCGTGTATGTC 59.321 47.826 0.00 0.00 0.00 3.06
1780 2908 3.576982 TGGTCTTTCTTCCGTGTATGTCT 59.423 43.478 0.00 0.00 0.00 3.41
1781 2909 3.927142 GGTCTTTCTTCCGTGTATGTCTG 59.073 47.826 0.00 0.00 0.00 3.51
1782 2910 4.557205 GTCTTTCTTCCGTGTATGTCTGT 58.443 43.478 0.00 0.00 0.00 3.41
1783 2911 4.989168 GTCTTTCTTCCGTGTATGTCTGTT 59.011 41.667 0.00 0.00 0.00 3.16
1784 2912 5.118817 GTCTTTCTTCCGTGTATGTCTGTTC 59.881 44.000 0.00 0.00 0.00 3.18
1785 2913 3.587797 TCTTCCGTGTATGTCTGTTCC 57.412 47.619 0.00 0.00 0.00 3.62
1786 2914 2.894765 TCTTCCGTGTATGTCTGTTCCA 59.105 45.455 0.00 0.00 0.00 3.53
1787 2915 3.513912 TCTTCCGTGTATGTCTGTTCCAT 59.486 43.478 0.00 0.00 0.00 3.41
1788 2916 4.707934 TCTTCCGTGTATGTCTGTTCCATA 59.292 41.667 0.00 0.00 0.00 2.74
1789 2917 4.649088 TCCGTGTATGTCTGTTCCATAG 57.351 45.455 0.00 0.00 0.00 2.23
1790 2918 3.123804 CCGTGTATGTCTGTTCCATAGC 58.876 50.000 0.00 0.00 0.00 2.97
1791 2919 3.430236 CCGTGTATGTCTGTTCCATAGCA 60.430 47.826 0.00 0.00 0.00 3.49
1792 2920 3.798878 CGTGTATGTCTGTTCCATAGCAG 59.201 47.826 0.00 0.00 0.00 4.24
1793 2921 4.678044 CGTGTATGTCTGTTCCATAGCAGT 60.678 45.833 0.00 0.00 34.57 4.40
1810 2938 1.133982 CAGTACACTCGCAGCAGAGAT 59.866 52.381 17.64 9.72 40.57 2.75
1823 2951 2.125106 GAGATCCACGCCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
1824 2952 2.927856 AGATCCACGCCACCACCA 60.928 61.111 0.00 0.00 0.00 4.17
1825 2953 2.746277 GATCCACGCCACCACCAC 60.746 66.667 0.00 0.00 0.00 4.16
1826 2954 4.697756 ATCCACGCCACCACCACG 62.698 66.667 0.00 0.00 0.00 4.94
1828 2956 4.302509 CCACGCCACCACCACGTA 62.303 66.667 0.00 0.00 38.09 3.57
1853 2981 2.680841 ACTTACAAACGTGCATGTGTGT 59.319 40.909 32.01 32.01 42.79 3.72
1952 3130 6.368791 TCAGTGTATCTTTTCGAAAGGACATG 59.631 38.462 23.05 16.36 0.00 3.21
1953 3131 5.643777 AGTGTATCTTTTCGAAAGGACATGG 59.356 40.000 23.05 4.43 0.00 3.66
1979 3157 1.754226 TGGCCTGTTTCTTTCCAACAC 59.246 47.619 3.32 0.00 30.83 3.32
2630 5544 2.130272 TCTGCTCACCGACATCTACT 57.870 50.000 0.00 0.00 0.00 2.57
3054 8237 4.753107 ACTACGTACACAAATTGTTGAGGG 59.247 41.667 0.00 0.00 39.91 4.30
3159 8342 2.288273 GGCATCTTACGCTATCCGACTT 60.288 50.000 0.00 0.00 41.02 3.01
3175 8358 3.246936 CCGACTTGTCTATCACATGCATG 59.753 47.826 25.09 25.09 33.90 4.06
3212 8397 1.901464 GAAACCATGTGCGTGGGGT 60.901 57.895 14.22 2.18 43.77 4.95
3214 8399 1.460273 AAACCATGTGCGTGGGGTTC 61.460 55.000 14.22 0.00 42.54 3.62
3215 8400 3.430862 CCATGTGCGTGGGGTTCG 61.431 66.667 2.57 0.00 35.55 3.95
3218 8403 1.671054 ATGTGCGTGGGGTTCGAAG 60.671 57.895 0.00 0.00 0.00 3.79
3219 8404 3.047877 GTGCGTGGGGTTCGAAGG 61.048 66.667 0.00 0.00 0.00 3.46
3220 8405 3.235481 TGCGTGGGGTTCGAAGGA 61.235 61.111 0.00 0.00 0.00 3.36
3221 8406 2.434359 GCGTGGGGTTCGAAGGAG 60.434 66.667 0.00 0.00 0.00 3.69
3224 8428 3.327404 TGGGGTTCGAAGGAGGCC 61.327 66.667 0.00 0.00 0.00 5.19
3234 8438 1.614317 CGAAGGAGGCCCAAATTGAGT 60.614 52.381 0.00 0.00 33.88 3.41
3235 8439 1.821136 GAAGGAGGCCCAAATTGAGTG 59.179 52.381 0.00 0.00 33.88 3.51
3252 8456 4.339439 GAGTGAAGCTCAAGATCAAAGC 57.661 45.455 0.00 0.37 43.58 3.51
3253 8457 2.740981 AGTGAAGCTCAAGATCAAAGCG 59.259 45.455 0.00 0.00 40.95 4.68
3254 8458 2.079158 TGAAGCTCAAGATCAAAGCGG 58.921 47.619 0.00 0.00 40.95 5.52
3255 8459 0.807496 AAGCTCAAGATCAAAGCGGC 59.193 50.000 0.00 0.00 40.95 6.53
3256 8460 1.028868 AGCTCAAGATCAAAGCGGCC 61.029 55.000 0.00 0.00 40.95 6.13
3257 8461 1.997928 GCTCAAGATCAAAGCGGCCC 61.998 60.000 0.00 0.00 0.00 5.80
3258 8462 1.378514 TCAAGATCAAAGCGGCCCC 60.379 57.895 0.00 0.00 0.00 5.80
3259 8463 1.379044 CAAGATCAAAGCGGCCCCT 60.379 57.895 0.00 0.00 0.00 4.79
3289 8493 5.306532 TGTAACGATCTCGAGCTAGTTTT 57.693 39.130 17.76 4.96 43.02 2.43
3352 8976 8.973182 ACTATTATTCCAACTAGCTAGATAGGC 58.027 37.037 27.45 0.00 0.00 3.93
3392 9016 7.482654 GCACAAGATATGCATAAGTAGTTCA 57.517 36.000 11.13 0.00 42.88 3.18
3431 9058 7.801104 ACAAAATGTTGTTCTTAAAATCCCCT 58.199 30.769 0.00 0.00 46.01 4.79
3488 9117 8.885722 CATATGCTGGAAATGCAAATTTAAAGT 58.114 29.630 0.00 0.00 44.01 2.66
3587 9216 6.164876 TGTTGATTTCTTATGGTGCCAAATG 58.835 36.000 0.00 0.00 0.00 2.32
3674 9303 6.412653 CACACCGTATTTGTTGTAACTTGTTC 59.587 38.462 0.00 0.00 0.00 3.18
3743 9409 1.304052 CCAGGCCGGGTCAATGAAA 60.304 57.895 14.74 0.00 0.00 2.69
3850 9523 0.957395 GACTGGCAGGGACACATGTG 60.957 60.000 24.25 24.25 0.00 3.21
3872 9545 1.834896 TGAGCCGGCTAATTAGGAACA 59.165 47.619 32.97 17.23 0.00 3.18
3873 9546 2.158957 TGAGCCGGCTAATTAGGAACAG 60.159 50.000 32.97 0.00 0.00 3.16
3874 9547 2.102588 GAGCCGGCTAATTAGGAACAGA 59.897 50.000 32.97 0.00 0.00 3.41
3875 9548 2.103263 AGCCGGCTAATTAGGAACAGAG 59.897 50.000 31.86 0.00 0.00 3.35
3876 9549 2.102588 GCCGGCTAATTAGGAACAGAGA 59.897 50.000 22.15 0.00 0.00 3.10
3877 9550 3.800604 GCCGGCTAATTAGGAACAGAGAG 60.801 52.174 22.15 0.00 0.00 3.20
3878 9551 3.637229 CCGGCTAATTAGGAACAGAGAGA 59.363 47.826 14.28 0.00 0.00 3.10
3879 9552 4.282195 CCGGCTAATTAGGAACAGAGAGAT 59.718 45.833 14.28 0.00 0.00 2.75
3880 9553 5.477291 CCGGCTAATTAGGAACAGAGAGATA 59.523 44.000 14.28 0.00 0.00 1.98
3881 9554 6.349777 CCGGCTAATTAGGAACAGAGAGATAG 60.350 46.154 14.28 0.00 0.00 2.08
3882 9555 6.431543 CGGCTAATTAGGAACAGAGAGATAGA 59.568 42.308 14.28 0.00 0.00 1.98
3883 9556 7.361713 CGGCTAATTAGGAACAGAGAGATAGAG 60.362 44.444 14.28 0.00 0.00 2.43
3884 9557 7.668052 GGCTAATTAGGAACAGAGAGATAGAGA 59.332 40.741 14.28 0.00 0.00 3.10
3885 9558 8.730680 GCTAATTAGGAACAGAGAGATAGAGAG 58.269 40.741 14.28 0.00 0.00 3.20
3887 9560 8.924511 AATTAGGAACAGAGAGATAGAGAGAG 57.075 38.462 0.00 0.00 0.00 3.20
3888 9561 7.684317 TTAGGAACAGAGAGATAGAGAGAGA 57.316 40.000 0.00 0.00 0.00 3.10
3889 9562 6.179906 AGGAACAGAGAGATAGAGAGAGAG 57.820 45.833 0.00 0.00 0.00 3.20
3890 9563 5.905331 AGGAACAGAGAGATAGAGAGAGAGA 59.095 44.000 0.00 0.00 0.00 3.10
3891 9564 6.042552 AGGAACAGAGAGATAGAGAGAGAGAG 59.957 46.154 0.00 0.00 0.00 3.20
3907 9580 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4014 9697 6.575162 ATGACCAAACAGAATCAAAGTACC 57.425 37.500 0.00 0.00 0.00 3.34
4045 9731 2.663520 CACGTACCTGCCACGCAA 60.664 61.111 0.00 0.00 43.10 4.85
4090 9778 1.676678 GCCTATGGGAGACAGCGTCA 61.677 60.000 0.00 0.00 34.60 4.35
4102 9790 3.044305 GCGTCAGGACTGTGGTGC 61.044 66.667 0.00 0.00 0.00 5.01
4106 9811 0.388649 GTCAGGACTGTGGTGCTACG 60.389 60.000 0.00 0.00 42.19 3.51
4121 9826 3.656719 GTGCTACGTACGTGTCGATAATC 59.343 47.826 30.25 5.12 0.00 1.75
4238 10355 7.387948 AGAAACACGAAAGACAAAGCATATACT 59.612 33.333 0.00 0.00 0.00 2.12
4240 10357 7.521509 ACACGAAAGACAAAGCATATACTAC 57.478 36.000 0.00 0.00 0.00 2.73
4292 10429 1.036481 TTGCTGGCTGCTGTGTTTGA 61.036 50.000 17.45 0.00 43.37 2.69
4295 10432 1.668047 GCTGGCTGCTGTGTTTGATTC 60.668 52.381 9.31 0.00 38.95 2.52
4353 10498 6.985645 TCTTTTGATTTGGAGAACACAAATGG 59.014 34.615 7.98 0.00 45.60 3.16
4391 10536 1.284657 CATGAGTACGCTCCAAGCAG 58.715 55.000 0.00 0.00 42.58 4.24
4403 10548 3.058224 GCTCCAAGCAGAACATAAACGTT 60.058 43.478 0.00 0.00 41.89 3.99
4418 10564 4.419522 AAACGTTTGATATGACTGCACC 57.580 40.909 13.81 0.00 0.00 5.01
4419 10565 2.356135 ACGTTTGATATGACTGCACCC 58.644 47.619 0.00 0.00 0.00 4.61
4500 10659 0.599991 GTTTGCCGGCCCTTTTCTTG 60.600 55.000 26.77 0.00 0.00 3.02
4641 10800 5.679734 ACACAAGTCATCATGTCTCAAAC 57.320 39.130 0.00 0.00 0.00 2.93
4645 10806 6.974048 CACAAGTCATCATGTCTCAAACAAAA 59.026 34.615 0.00 0.00 42.37 2.44
4696 10862 6.394025 AAATAAAAGTAAAGCCACAACCGA 57.606 33.333 0.00 0.00 0.00 4.69
4777 10943 0.668535 GGATGAAAATAGCCCGTGCC 59.331 55.000 0.00 0.00 38.69 5.01
4826 10993 0.395311 ATACGCTCCCTGAACTCCGA 60.395 55.000 0.00 0.00 0.00 4.55
4827 10994 1.310933 TACGCTCCCTGAACTCCGAC 61.311 60.000 0.00 0.00 0.00 4.79
4828 10995 2.182030 GCTCCCTGAACTCCGACG 59.818 66.667 0.00 0.00 0.00 5.12
4829 10996 2.341101 GCTCCCTGAACTCCGACGA 61.341 63.158 0.00 0.00 0.00 4.20
4830 10997 1.874345 GCTCCCTGAACTCCGACGAA 61.874 60.000 0.00 0.00 0.00 3.85
4831 10998 0.109226 CTCCCTGAACTCCGACGAAC 60.109 60.000 0.00 0.00 0.00 3.95
4832 10999 0.538977 TCCCTGAACTCCGACGAACT 60.539 55.000 0.00 0.00 0.00 3.01
4833 11000 0.317479 CCCTGAACTCCGACGAACTT 59.683 55.000 0.00 0.00 0.00 2.66
4935 11102 8.622157 TGTTCACGTTAAAGACCAAATCATTTA 58.378 29.630 0.00 0.00 0.00 1.40
4995 11163 2.032894 CACGAATGTGTCTCGCTGTTTT 60.033 45.455 0.00 0.00 41.34 2.43
5055 11224 8.364142 GTGCTGATAGTATTCAGAGGAGTAATT 58.636 37.037 5.67 0.00 44.88 1.40
5056 11225 9.588096 TGCTGATAGTATTCAGAGGAGTAATTA 57.412 33.333 5.67 0.00 44.88 1.40
5066 11235 9.660180 ATTCAGAGGAGTAATTAGAAAGACAAC 57.340 33.333 0.00 0.00 0.00 3.32
5067 11236 8.190326 TCAGAGGAGTAATTAGAAAGACAACA 57.810 34.615 0.00 0.00 0.00 3.33
5068 11237 8.647796 TCAGAGGAGTAATTAGAAAGACAACAA 58.352 33.333 0.00 0.00 0.00 2.83
5069 11238 8.713271 CAGAGGAGTAATTAGAAAGACAACAAC 58.287 37.037 0.00 0.00 0.00 3.32
5070 11239 8.429641 AGAGGAGTAATTAGAAAGACAACAACA 58.570 33.333 0.00 0.00 0.00 3.33
5071 11240 8.974060 AGGAGTAATTAGAAAGACAACAACAA 57.026 30.769 0.00 0.00 0.00 2.83
5072 11241 8.837389 AGGAGTAATTAGAAAGACAACAACAAC 58.163 33.333 0.00 0.00 0.00 3.32
5073 11242 8.617809 GGAGTAATTAGAAAGACAACAACAACA 58.382 33.333 0.00 0.00 0.00 3.33
5074 11243 9.434559 GAGTAATTAGAAAGACAACAACAACAC 57.565 33.333 0.00 0.00 0.00 3.32
5075 11244 9.174166 AGTAATTAGAAAGACAACAACAACACT 57.826 29.630 0.00 0.00 0.00 3.55
5076 11245 9.221775 GTAATTAGAAAGACAACAACAACACTG 57.778 33.333 0.00 0.00 0.00 3.66
5077 11246 7.624360 ATTAGAAAGACAACAACAACACTGA 57.376 32.000 0.00 0.00 0.00 3.41
5117 11286 6.462487 CCTGTCCACAGTAAGTAGAAAGACAA 60.462 42.308 5.99 0.00 42.27 3.18
5133 11303 7.875971 AGAAAGACAACAACAGCTAATTAAGG 58.124 34.615 0.00 0.00 0.00 2.69
5216 11387 8.776376 TTCAGTTTCTTTCTTTTCATTTTGCT 57.224 26.923 0.00 0.00 0.00 3.91
5254 11430 2.703416 TGCCACTGATCTTGTCATGTC 58.297 47.619 0.00 0.00 35.97 3.06
5275 11451 1.815003 TGCAGCCGTGATTCATCCG 60.815 57.895 0.00 0.00 0.00 4.18
5281 11457 0.247655 CCGTGATTCATCCGTTTGCG 60.248 55.000 0.00 0.00 37.95 4.85
5311 11487 1.470112 GCCTACGAACTGCTCTTCTCC 60.470 57.143 0.00 0.00 0.00 3.71
5548 11724 9.827411 CTGCAATGATTACATCTTATCATCTTG 57.173 33.333 0.00 0.00 39.83 3.02
5566 11945 8.658499 TCATCTTGTCATATGATCTGAACTTG 57.342 34.615 9.02 3.83 0.00 3.16
5718 12097 1.743252 GAGCAAGGAGGAAGCCGTG 60.743 63.158 0.00 0.00 39.92 4.94
5865 12244 1.524482 GCTCTCCATGGTCCTCACC 59.476 63.158 12.58 0.00 44.10 4.02
5869 12248 0.618680 CTCCATGGTCCTCACCTGGA 60.619 60.000 12.58 10.23 44.17 3.86
5891 12270 1.467342 GTATGGTTCTTGGTTCACCGC 59.533 52.381 0.00 0.00 39.43 5.68
5901 12280 0.670854 GGTTCACCGCTGAGAGGAAC 60.671 60.000 9.85 3.68 37.66 3.62
6030 12414 5.237779 TGTCGACAAATGACTAACCTTTTCC 59.762 40.000 17.62 0.00 37.26 3.13
6066 12451 1.072331 TGAACTGGGAGAAGGAAGCAC 59.928 52.381 0.00 0.00 0.00 4.40
6418 13074 6.089016 CGGTTGCTTATATAACAGATACCACG 59.911 42.308 12.67 0.00 0.00 4.94
6419 13075 6.927381 GGTTGCTTATATAACAGATACCACGT 59.073 38.462 0.00 0.00 0.00 4.49
6421 13077 8.485591 GTTGCTTATATAACAGATACCACGTTC 58.514 37.037 0.00 0.00 0.00 3.95
6422 13078 7.718525 TGCTTATATAACAGATACCACGTTCA 58.281 34.615 0.00 0.00 0.00 3.18
6423 13079 7.650504 TGCTTATATAACAGATACCACGTTCAC 59.349 37.037 0.00 0.00 0.00 3.18
6424 13080 7.650504 GCTTATATAACAGATACCACGTTCACA 59.349 37.037 0.00 0.00 0.00 3.58
6431 13087 6.170506 ACAGATACCACGTTCACAAATATGT 58.829 36.000 0.00 0.00 41.61 2.29
6620 13276 1.187567 ACATTTCCAAGGTGGCCTGC 61.188 55.000 3.32 0.00 37.47 4.85
6697 13363 8.777865 TCAGATCTTCTTCATTTTAATCACGT 57.222 30.769 0.00 0.00 0.00 4.49
6708 13374 2.665649 TAATCACGTGGCGAGACAAT 57.334 45.000 17.00 0.00 0.00 2.71
6711 13377 0.249699 TCACGTGGCGAGACAATGTT 60.250 50.000 17.00 0.00 0.00 2.71
6719 13385 3.003897 TGGCGAGACAATGTTTTTACACC 59.996 43.478 0.00 0.00 0.00 4.16
6866 13533 6.579666 AAGAACAAGTTATGCATGTGTGAT 57.420 33.333 10.16 0.00 0.00 3.06
6893 13560 6.176014 GGGGGCATCATATAAGTATACTCC 57.824 45.833 5.70 0.00 0.00 3.85
6894 13561 5.905913 GGGGGCATCATATAAGTATACTCCT 59.094 44.000 5.70 0.00 0.00 3.69
6895 13562 6.042208 GGGGGCATCATATAAGTATACTCCTC 59.958 46.154 5.70 0.00 0.00 3.71
6896 13563 6.042208 GGGGCATCATATAAGTATACTCCTCC 59.958 46.154 5.70 0.61 0.00 4.30
6933 13602 8.965986 TTATGTATCACGTATGATCAGCTAAC 57.034 34.615 0.09 0.00 42.15 2.34
6947 13616 1.095807 GCTAACGGAATGGCTGGTCC 61.096 60.000 0.00 0.00 0.00 4.46
7138 13807 1.990799 TGTTCATTCGTGCGAGGTAG 58.009 50.000 0.00 0.00 0.00 3.18
7146 13815 0.110056 CGTGCGAGGTAGTAACACGT 60.110 55.000 6.89 0.00 46.56 4.49
7157 13826 1.764134 AGTAACACGTTCCCTGAACCA 59.236 47.619 1.66 0.00 39.14 3.67
7167 13836 1.734477 CCTGAACCACGACTCTGCG 60.734 63.158 0.00 0.00 37.29 5.18
7178 13857 1.402259 CGACTCTGCGAGAACCTACAT 59.598 52.381 11.64 0.00 33.32 2.29
7179 13858 2.792890 CGACTCTGCGAGAACCTACATG 60.793 54.545 11.64 0.00 33.32 3.21
7207 13886 2.945008 TCTTGTTGAGCTGACCAGTTTG 59.055 45.455 0.00 0.00 0.00 2.93
7208 13887 1.679139 TGTTGAGCTGACCAGTTTGG 58.321 50.000 0.00 0.00 45.02 3.28
7222 13901 6.098124 TGACCAGTTTGGAAACATTTCAGAAT 59.902 34.615 1.40 0.00 40.96 2.40
7297 13976 2.501610 GAGGGATGGGACGAGCAC 59.498 66.667 0.00 0.00 0.00 4.40
7354 14033 2.666190 TCTGCCGCACTTCTGCAC 60.666 61.111 0.00 0.00 44.50 4.57
7375 14054 2.668212 TTTCGCCCCGTTGCTGAG 60.668 61.111 0.00 0.00 0.00 3.35
7440 14139 3.829026 AGATAAGGTCATATGCTCGCTGA 59.171 43.478 0.00 0.00 0.00 4.26
7442 14141 2.522836 AGGTCATATGCTCGCTGAAG 57.477 50.000 0.00 0.00 0.00 3.02
7443 14142 1.069823 AGGTCATATGCTCGCTGAAGG 59.930 52.381 0.00 0.00 0.00 3.46
7447 14146 1.699054 ATATGCTCGCTGAAGGGCCA 61.699 55.000 6.18 0.00 36.62 5.36
7470 14169 2.028203 GCTGAGGAAGAAGAAGCAGACT 60.028 50.000 0.00 0.00 34.01 3.24
7473 14172 5.626578 GCTGAGGAAGAAGAAGCAGACTTAT 60.627 44.000 0.00 0.00 35.82 1.73
7591 14290 9.526713 CATTATTCATCTCCTACGATAATGAGG 57.473 37.037 7.70 0.00 0.00 3.86
7611 14310 3.056035 AGGTAATGAGACTTGGTTCGACC 60.056 47.826 0.00 0.00 39.22 4.79
7612 14311 3.056035 GGTAATGAGACTTGGTTCGACCT 60.056 47.826 5.77 0.00 39.58 3.85
7613 14312 4.159135 GGTAATGAGACTTGGTTCGACCTA 59.841 45.833 5.77 0.00 39.58 3.08
7614 14313 4.457834 AATGAGACTTGGTTCGACCTAG 57.542 45.455 11.67 11.67 44.88 3.02
7718 14578 5.882557 AGTGTTTCAATTGACTCAGAACTGT 59.117 36.000 7.89 0.00 0.00 3.55
7723 14583 5.427378 TCAATTGACTCAGAACTGTTGTGA 58.573 37.500 17.92 17.92 0.00 3.58
7724 14584 5.294306 TCAATTGACTCAGAACTGTTGTGAC 59.706 40.000 15.46 8.46 0.00 3.67
7725 14585 3.885724 TGACTCAGAACTGTTGTGACA 57.114 42.857 15.46 10.74 0.00 3.58
7726 14586 3.521560 TGACTCAGAACTGTTGTGACAC 58.478 45.455 15.46 12.43 0.00 3.67
7829 14689 6.256819 TGGATCGGATAGGTTAGATCATTCT 58.743 40.000 0.00 0.00 40.74 2.40
7840 14700 6.617371 AGGTTAGATCATTCTGGTGAACCTAT 59.383 38.462 1.21 0.00 41.93 2.57
7853 14713 3.196685 GTGAACCTATCTTCTGCCTGTCT 59.803 47.826 0.00 0.00 0.00 3.41
7867 14727 1.944024 CCTGTCTAGACGAGCTCGATT 59.056 52.381 40.58 27.93 43.02 3.34
7901 14761 0.835276 GTGAAGTAGGGGCCGGTTAT 59.165 55.000 1.90 0.00 0.00 1.89
8058 14919 1.900245 TATATAGCGCGGGTCACAGA 58.100 50.000 8.83 0.00 0.00 3.41
8069 14930 1.380302 GTCACAGAGGCCCACCAAT 59.620 57.895 0.00 0.00 39.06 3.16
8162 15023 5.454045 GGGAGAGAGATCAACCTAACATTCC 60.454 48.000 0.00 0.00 0.00 3.01
8235 15096 9.898152 TCTGTTTCATCACATATTGGTACATAA 57.102 29.630 0.00 0.00 39.30 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.117956 GGAGGTTAACTGAAGATTGTTACAGTC 59.882 40.741 5.42 0.00 41.73 3.51
40 41 6.371825 GTGGTAAGGAGGTTAACTGAAGATTG 59.628 42.308 5.42 0.00 0.00 2.67
126 130 5.452776 CGGTATTTATCTGCCTGGTGAACTA 60.453 44.000 0.00 0.00 0.00 2.24
127 131 4.683400 CGGTATTTATCTGCCTGGTGAACT 60.683 45.833 0.00 0.00 0.00 3.01
135 139 5.989777 GTGTTCATACGGTATTTATCTGCCT 59.010 40.000 0.00 0.00 0.00 4.75
148 152 4.159135 AGTTACTAGTGGGTGTTCATACGG 59.841 45.833 5.39 0.00 0.00 4.02
155 159 5.221783 CCCTTACAAGTTACTAGTGGGTGTT 60.222 44.000 5.39 0.00 0.00 3.32
159 163 4.381292 CGACCCTTACAAGTTACTAGTGGG 60.381 50.000 5.39 6.61 38.13 4.61
161 165 5.633830 TCGACCCTTACAAGTTACTAGTG 57.366 43.478 5.39 0.00 0.00 2.74
184 555 4.211920 CCTGGAAACAAACACCCTCTTAA 58.788 43.478 0.00 0.00 42.06 1.85
185 556 3.435890 CCCTGGAAACAAACACCCTCTTA 60.436 47.826 0.00 0.00 42.06 2.10
186 557 2.666317 CCTGGAAACAAACACCCTCTT 58.334 47.619 0.00 0.00 42.06 2.85
187 558 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
188 559 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
189 560 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
190 561 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
191 562 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
192 563 5.585820 TTTAAGTCCCTGGAAACAAACAC 57.414 39.130 0.00 0.00 42.06 3.32
193 564 6.607004 TTTTTAAGTCCCTGGAAACAAACA 57.393 33.333 0.00 0.00 42.06 2.83
214 585 9.682465 GTTTAGATGGGACTTATAAGGACTTTT 57.318 33.333 16.73 0.00 0.00 2.27
215 586 8.272889 GGTTTAGATGGGACTTATAAGGACTTT 58.727 37.037 16.73 0.00 0.00 2.66
216 587 7.404980 TGGTTTAGATGGGACTTATAAGGACTT 59.595 37.037 16.73 4.79 0.00 3.01
217 588 6.906901 TGGTTTAGATGGGACTTATAAGGACT 59.093 38.462 16.73 8.42 0.00 3.85
218 589 7.133133 TGGTTTAGATGGGACTTATAAGGAC 57.867 40.000 16.73 9.80 0.00 3.85
219 590 7.758820 TTGGTTTAGATGGGACTTATAAGGA 57.241 36.000 16.73 0.00 0.00 3.36
220 591 7.832187 TGTTTGGTTTAGATGGGACTTATAAGG 59.168 37.037 16.73 0.00 0.00 2.69
221 592 8.801882 TGTTTGGTTTAGATGGGACTTATAAG 57.198 34.615 11.05 11.05 0.00 1.73
222 593 7.832187 CCTGTTTGGTTTAGATGGGACTTATAA 59.168 37.037 0.00 0.00 0.00 0.98
223 594 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
224 595 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
225 596 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
226 597 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
227 598 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
228 599 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
229 600 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
230 601 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
231 602 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
232 603 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
233 604 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
234 605 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
235 606 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
236 607 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
237 608 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
238 609 5.098663 TCTATAAGTCCCTCCTGTTTGGTT 58.901 41.667 0.00 0.00 37.07 3.67
239 610 4.695606 TCTATAAGTCCCTCCTGTTTGGT 58.304 43.478 0.00 0.00 37.07 3.67
240 611 4.962995 TCTCTATAAGTCCCTCCTGTTTGG 59.037 45.833 0.00 0.00 37.10 3.28
241 612 5.659079 AGTCTCTATAAGTCCCTCCTGTTTG 59.341 44.000 0.00 0.00 0.00 2.93
242 613 5.844601 AGTCTCTATAAGTCCCTCCTGTTT 58.155 41.667 0.00 0.00 0.00 2.83
243 614 5.475398 AGTCTCTATAAGTCCCTCCTGTT 57.525 43.478 0.00 0.00 0.00 3.16
244 615 5.475398 AAGTCTCTATAAGTCCCTCCTGT 57.525 43.478 0.00 0.00 0.00 4.00
245 616 7.562088 ACTTTAAGTCTCTATAAGTCCCTCCTG 59.438 40.741 0.00 0.00 0.00 3.86
246 617 7.562088 CACTTTAAGTCTCTATAAGTCCCTCCT 59.438 40.741 0.00 0.00 0.00 3.69
247 618 7.201929 CCACTTTAAGTCTCTATAAGTCCCTCC 60.202 44.444 0.00 0.00 0.00 4.30
248 619 7.201929 CCCACTTTAAGTCTCTATAAGTCCCTC 60.202 44.444 0.00 0.00 0.00 4.30
249 620 6.612049 CCCACTTTAAGTCTCTATAAGTCCCT 59.388 42.308 0.00 0.00 0.00 4.20
250 621 6.685873 GCCCACTTTAAGTCTCTATAAGTCCC 60.686 46.154 0.00 0.00 0.00 4.46
251 622 6.127140 TGCCCACTTTAAGTCTCTATAAGTCC 60.127 42.308 0.00 0.00 0.00 3.85
252 623 6.875076 TGCCCACTTTAAGTCTCTATAAGTC 58.125 40.000 0.00 0.00 0.00 3.01
253 624 6.869206 TGCCCACTTTAAGTCTCTATAAGT 57.131 37.500 0.00 0.00 0.00 2.24
254 625 8.616076 CAAATGCCCACTTTAAGTCTCTATAAG 58.384 37.037 0.00 0.00 0.00 1.73
255 626 7.556275 CCAAATGCCCACTTTAAGTCTCTATAA 59.444 37.037 0.00 0.00 0.00 0.98
256 627 7.054124 CCAAATGCCCACTTTAAGTCTCTATA 58.946 38.462 0.00 0.00 0.00 1.31
257 628 5.888161 CCAAATGCCCACTTTAAGTCTCTAT 59.112 40.000 0.00 0.00 0.00 1.98
258 629 5.253330 CCAAATGCCCACTTTAAGTCTCTA 58.747 41.667 0.00 0.00 0.00 2.43
259 630 4.082125 CCAAATGCCCACTTTAAGTCTCT 58.918 43.478 0.00 0.00 0.00 3.10
260 631 3.193479 CCCAAATGCCCACTTTAAGTCTC 59.807 47.826 0.00 0.00 0.00 3.36
261 632 3.165071 CCCAAATGCCCACTTTAAGTCT 58.835 45.455 0.00 0.00 0.00 3.24
262 633 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
263 634 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
264 635 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
265 636 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
266 637 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
267 638 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
268 639 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
269 640 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
270 641 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
271 642 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
272 643 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
273 644 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
274 645 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
275 646 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
276 647 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
277 648 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
278 649 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
279 650 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
280 651 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
281 652 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
282 653 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
283 654 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
284 655 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
285 656 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
286 657 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
287 658 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
288 659 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
289 660 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
290 661 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
291 662 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
292 663 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
293 664 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
294 665 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
295 666 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
296 667 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
297 668 4.388118 CCCTATAAGTCCCTCCTTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
298 669 4.140900 TCCCTATAAGTCCCTCCTTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
299 670 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
300 671 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
301 672 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
302 673 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
303 674 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
304 675 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
305 676 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
306 677 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
307 678 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
308 679 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
317 688 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
318 689 9.708092 GAAGACCATATTACAACTATAAGTCCC 57.292 37.037 0.00 0.00 0.00 4.46
325 696 9.656323 TGGACTAGAAGACCATATTACAACTAT 57.344 33.333 0.00 0.00 35.22 2.12
326 697 9.656323 ATGGACTAGAAGACCATATTACAACTA 57.344 33.333 8.81 0.00 46.22 2.24
327 698 7.973048 TGGACTAGAAGACCATATTACAACT 57.027 36.000 0.00 0.00 35.22 3.16
328 699 8.204836 ACATGGACTAGAAGACCATATTACAAC 58.795 37.037 9.96 0.00 46.31 3.32
329 700 8.319057 ACATGGACTAGAAGACCATATTACAA 57.681 34.615 9.96 0.00 46.31 2.41
330 701 7.914427 ACATGGACTAGAAGACCATATTACA 57.086 36.000 9.96 0.00 46.31 2.41
333 704 8.993424 ACTTAACATGGACTAGAAGACCATATT 58.007 33.333 9.96 8.42 46.31 1.28
334 705 8.554490 ACTTAACATGGACTAGAAGACCATAT 57.446 34.615 9.96 6.06 46.31 1.78
335 706 7.069578 GGACTTAACATGGACTAGAAGACCATA 59.930 40.741 9.96 0.00 46.31 2.74
337 708 5.187186 GGACTTAACATGGACTAGAAGACCA 59.813 44.000 0.00 0.74 43.65 4.02
338 709 5.395435 GGGACTTAACATGGACTAGAAGACC 60.395 48.000 0.00 0.00 0.00 3.85
339 710 5.187186 TGGGACTTAACATGGACTAGAAGAC 59.813 44.000 0.00 0.00 0.00 3.01
340 711 5.338632 TGGGACTTAACATGGACTAGAAGA 58.661 41.667 0.00 0.00 0.00 2.87
341 712 5.395768 CCTGGGACTTAACATGGACTAGAAG 60.396 48.000 0.00 0.00 0.00 2.85
342 713 4.469945 CCTGGGACTTAACATGGACTAGAA 59.530 45.833 0.00 0.00 0.00 2.10
343 714 4.030913 CCTGGGACTTAACATGGACTAGA 58.969 47.826 0.00 0.00 0.00 2.43
344 715 4.030913 TCCTGGGACTTAACATGGACTAG 58.969 47.826 0.00 0.00 0.00 2.57
345 716 4.069312 TCCTGGGACTTAACATGGACTA 57.931 45.455 0.00 0.00 0.00 2.59
346 717 2.915869 TCCTGGGACTTAACATGGACT 58.084 47.619 0.00 0.00 0.00 3.85
347 718 3.344515 GTTCCTGGGACTTAACATGGAC 58.655 50.000 0.00 0.00 0.00 4.02
348 719 2.307686 GGTTCCTGGGACTTAACATGGA 59.692 50.000 4.84 0.00 0.00 3.41
349 720 2.041081 TGGTTCCTGGGACTTAACATGG 59.959 50.000 4.84 0.00 0.00 3.66
350 721 3.433306 TGGTTCCTGGGACTTAACATG 57.567 47.619 4.84 0.00 0.00 3.21
351 722 4.149598 GTTTGGTTCCTGGGACTTAACAT 58.850 43.478 4.84 0.00 0.00 2.71
352 723 3.053544 TGTTTGGTTCCTGGGACTTAACA 60.054 43.478 16.45 16.45 0.00 2.41
353 724 3.558033 TGTTTGGTTCCTGGGACTTAAC 58.442 45.455 4.84 9.92 0.00 2.01
354 725 3.435890 CCTGTTTGGTTCCTGGGACTTAA 60.436 47.826 4.84 0.00 0.00 1.85
355 726 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
356 727 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
357 728 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
358 729 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
368 739 7.387122 GTCTCTAAAAAGTACCTACCTGTTTGG 59.613 40.741 0.00 0.00 42.93 3.28
369 740 8.148999 AGTCTCTAAAAAGTACCTACCTGTTTG 58.851 37.037 0.00 0.00 0.00 2.93
370 741 8.260099 AGTCTCTAAAAAGTACCTACCTGTTT 57.740 34.615 0.00 0.00 0.00 2.83
371 742 7.852550 AGTCTCTAAAAAGTACCTACCTGTT 57.147 36.000 0.00 0.00 0.00 3.16
372 743 7.508296 TCAAGTCTCTAAAAAGTACCTACCTGT 59.492 37.037 0.00 0.00 0.00 4.00
373 744 7.893658 TCAAGTCTCTAAAAAGTACCTACCTG 58.106 38.462 0.00 0.00 0.00 4.00
374 745 7.949006 TCTCAAGTCTCTAAAAAGTACCTACCT 59.051 37.037 0.00 0.00 0.00 3.08
375 746 8.028354 GTCTCAAGTCTCTAAAAAGTACCTACC 58.972 40.741 0.00 0.00 0.00 3.18
376 747 8.795513 AGTCTCAAGTCTCTAAAAAGTACCTAC 58.204 37.037 0.00 0.00 0.00 3.18
377 748 8.937207 AGTCTCAAGTCTCTAAAAAGTACCTA 57.063 34.615 0.00 0.00 0.00 3.08
378 749 7.842887 AGTCTCAAGTCTCTAAAAAGTACCT 57.157 36.000 0.00 0.00 0.00 3.08
387 758 8.750298 CCCAACTTATAAGTCTCAAGTCTCTAA 58.250 37.037 18.28 0.00 38.57 2.10
388 759 8.114102 TCCCAACTTATAAGTCTCAAGTCTCTA 58.886 37.037 18.28 0.00 38.57 2.43
389 760 6.954684 TCCCAACTTATAAGTCTCAAGTCTCT 59.045 38.462 18.28 0.00 38.57 3.10
390 761 7.036829 GTCCCAACTTATAAGTCTCAAGTCTC 58.963 42.308 18.28 1.23 38.57 3.36
391 762 6.497259 TGTCCCAACTTATAAGTCTCAAGTCT 59.503 38.462 18.28 0.00 38.57 3.24
392 763 6.698380 TGTCCCAACTTATAAGTCTCAAGTC 58.302 40.000 18.28 7.23 38.57 3.01
393 764 6.681729 TGTCCCAACTTATAAGTCTCAAGT 57.318 37.500 18.28 0.00 38.57 3.16
394 765 7.979444 TTTGTCCCAACTTATAAGTCTCAAG 57.021 36.000 18.28 6.66 38.57 3.02
395 766 8.754991 TTTTTGTCCCAACTTATAAGTCTCAA 57.245 30.769 18.28 14.58 38.57 3.02
417 788 8.990163 TTGGTTCATAAGACCTAAGACTTTTT 57.010 30.769 0.00 0.00 30.49 1.94
418 789 8.847196 GTTTGGTTCATAAGACCTAAGACTTTT 58.153 33.333 0.00 0.00 30.49 2.27
419 790 7.996644 TGTTTGGTTCATAAGACCTAAGACTTT 59.003 33.333 0.00 0.00 30.49 2.66
420 791 7.514721 TGTTTGGTTCATAAGACCTAAGACTT 58.485 34.615 0.00 0.00 32.63 3.01
421 792 7.074653 TGTTTGGTTCATAAGACCTAAGACT 57.925 36.000 0.00 0.00 0.00 3.24
422 793 7.148239 CCATGTTTGGTTCATAAGACCTAAGAC 60.148 40.741 0.00 0.00 38.30 3.01
423 794 6.884295 CCATGTTTGGTTCATAAGACCTAAGA 59.116 38.462 0.00 0.00 38.30 2.10
424 795 6.404734 GCCATGTTTGGTTCATAAGACCTAAG 60.405 42.308 0.00 0.00 45.57 2.18
425 796 5.417580 GCCATGTTTGGTTCATAAGACCTAA 59.582 40.000 0.00 0.00 45.57 2.69
426 797 4.947388 GCCATGTTTGGTTCATAAGACCTA 59.053 41.667 0.00 0.00 45.57 3.08
427 798 3.763897 GCCATGTTTGGTTCATAAGACCT 59.236 43.478 0.00 0.00 45.57 3.85
428 799 3.119137 GGCCATGTTTGGTTCATAAGACC 60.119 47.826 0.00 0.00 45.57 3.85
429 800 3.763897 AGGCCATGTTTGGTTCATAAGAC 59.236 43.478 5.01 0.00 45.57 3.01
430 801 4.046286 AGGCCATGTTTGGTTCATAAGA 57.954 40.909 5.01 0.00 45.57 2.10
431 802 5.418840 ACTTAGGCCATGTTTGGTTCATAAG 59.581 40.000 5.01 1.56 45.57 1.73
432 803 5.329399 ACTTAGGCCATGTTTGGTTCATAA 58.671 37.500 5.01 0.00 45.57 1.90
433 804 4.929479 ACTTAGGCCATGTTTGGTTCATA 58.071 39.130 5.01 0.00 45.57 2.15
434 805 3.763897 GACTTAGGCCATGTTTGGTTCAT 59.236 43.478 5.01 0.00 45.57 2.57
435 806 3.153919 GACTTAGGCCATGTTTGGTTCA 58.846 45.455 5.01 0.00 45.57 3.18
436 807 3.191371 CAGACTTAGGCCATGTTTGGTTC 59.809 47.826 5.01 0.00 45.57 3.62
437 808 3.157087 CAGACTTAGGCCATGTTTGGTT 58.843 45.455 5.01 0.00 45.57 3.67
438 809 2.555227 CCAGACTTAGGCCATGTTTGGT 60.555 50.000 18.06 3.57 45.57 3.67
439 810 2.094675 CCAGACTTAGGCCATGTTTGG 58.905 52.381 5.01 11.48 46.66 3.28
440 811 2.094675 CCCAGACTTAGGCCATGTTTG 58.905 52.381 5.01 5.94 0.00 2.93
441 812 1.710809 ACCCAGACTTAGGCCATGTTT 59.289 47.619 5.01 0.00 0.00 2.83
442 813 1.372501 ACCCAGACTTAGGCCATGTT 58.627 50.000 5.01 0.00 0.00 2.71
443 814 2.263895 TACCCAGACTTAGGCCATGT 57.736 50.000 5.01 0.00 0.00 3.21
444 815 2.158755 CCTTACCCAGACTTAGGCCATG 60.159 54.545 5.01 0.00 0.00 3.66
445 816 2.127708 CCTTACCCAGACTTAGGCCAT 58.872 52.381 5.01 0.00 0.00 4.40
446 817 1.580059 CCTTACCCAGACTTAGGCCA 58.420 55.000 5.01 0.00 0.00 5.36
447 818 0.837940 CCCTTACCCAGACTTAGGCC 59.162 60.000 0.00 0.00 0.00 5.19
448 819 1.209747 CACCCTTACCCAGACTTAGGC 59.790 57.143 0.00 0.00 0.00 3.93
449 820 1.209747 GCACCCTTACCCAGACTTAGG 59.790 57.143 0.00 0.00 0.00 2.69
501 873 0.541296 TCTCCGTTCTCTTTCGGGGT 60.541 55.000 3.48 0.00 46.40 4.95
502 874 4.913126 CTCCGTTCTCTTTCGGGG 57.087 61.111 3.85 0.00 45.79 5.73
503 875 0.889306 ACTCTCCGTTCTCTTTCGGG 59.111 55.000 3.85 0.00 45.79 5.14
530 902 2.926200 GTTCACACGATCTCCACTCATG 59.074 50.000 0.00 0.00 0.00 3.07
555 927 2.187946 GGGGCACGGTCAGATGAG 59.812 66.667 0.00 0.00 0.00 2.90
560 932 2.303549 GATCTCTGGGGCACGGTCAG 62.304 65.000 0.00 0.00 0.00 3.51
588 960 3.667217 ATGGCAGGGATGGGCACAC 62.667 63.158 0.00 0.00 44.01 3.82
597 969 1.001393 GGGTTTCGAATGGCAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
606 978 4.453136 CGAACCATTTTCTAGGGTTTCGAA 59.547 41.667 0.00 0.00 44.56 3.71
651 1023 2.540383 TCAGGCCAAGACTAGACATGT 58.460 47.619 5.01 0.00 0.00 3.21
666 1038 7.444703 AGGATATAATAAGGAGGAATCAGGC 57.555 40.000 0.00 0.00 0.00 4.85
739 1232 3.424433 CCGTCGAGGTAGATTTTGCAAAC 60.424 47.826 12.39 0.98 34.51 2.93
757 1251 4.806342 TTTTGTTAGAAAGTCTGCCGTC 57.194 40.909 0.00 0.00 0.00 4.79
766 1261 9.996554 ATCTTTTACCCCATTTTTGTTAGAAAG 57.003 29.630 0.00 0.00 0.00 2.62
771 1266 9.907229 ACAAAATCTTTTACCCCATTTTTGTTA 57.093 25.926 0.00 0.00 40.78 2.41
772 1267 8.815565 ACAAAATCTTTTACCCCATTTTTGTT 57.184 26.923 0.00 0.00 40.78 2.83
783 1280 7.360017 GCATGCCTGTTTACAAAATCTTTTACC 60.360 37.037 6.36 0.00 0.00 2.85
855 1572 1.795286 GCCTTTGAGAGTTCGACTGTG 59.205 52.381 0.00 0.00 0.00 3.66
913 1630 2.093869 TGACCTATCCGTTTGGTACTGC 60.094 50.000 0.00 0.00 33.74 4.40
1105 1835 8.919145 AGATTACACTTCTAATTAGCTAGCTGT 58.081 33.333 27.68 14.89 0.00 4.40
1112 1842 9.680315 ACACGATAGATTACACTTCTAATTAGC 57.320 33.333 7.67 0.00 41.38 3.09
1115 1845 8.692710 TGGACACGATAGATTACACTTCTAATT 58.307 33.333 0.00 0.00 41.38 1.40
1116 1846 8.234136 TGGACACGATAGATTACACTTCTAAT 57.766 34.615 0.00 0.00 41.38 1.73
1120 1850 6.588756 TGTTTGGACACGATAGATTACACTTC 59.411 38.462 0.00 0.00 41.38 3.01
1125 1855 7.117236 TCAGTTTGTTTGGACACGATAGATTAC 59.883 37.037 0.00 0.00 34.98 1.89
1145 1876 0.609131 CCGGCCAGATTGGTCAGTTT 60.609 55.000 2.24 0.00 43.88 2.66
1435 2172 1.179152 GCTACCTAGCCTAGCCTAGC 58.821 60.000 2.10 9.61 43.39 3.42
1745 2873 1.292992 AAGACCACGTGAAAACGTCC 58.707 50.000 19.30 0.75 45.26 4.79
1748 2876 3.545426 GGAAGAAAGACCACGTGAAAACG 60.545 47.826 19.30 1.55 39.31 3.60
1762 2890 4.389077 GGAACAGACATACACGGAAGAAAG 59.611 45.833 0.00 0.00 0.00 2.62
1781 2909 2.194271 GCGAGTGTACTGCTATGGAAC 58.806 52.381 0.00 0.00 0.00 3.62
1782 2910 1.822371 TGCGAGTGTACTGCTATGGAA 59.178 47.619 0.00 0.00 0.00 3.53
1783 2911 1.405463 CTGCGAGTGTACTGCTATGGA 59.595 52.381 0.00 0.00 0.00 3.41
1784 2912 1.845266 CTGCGAGTGTACTGCTATGG 58.155 55.000 0.00 0.00 0.00 2.74
1785 2913 1.203928 GCTGCGAGTGTACTGCTATG 58.796 55.000 0.00 0.00 0.00 2.23
1786 2914 0.817654 TGCTGCGAGTGTACTGCTAT 59.182 50.000 0.00 0.00 0.00 2.97
1787 2915 0.171231 CTGCTGCGAGTGTACTGCTA 59.829 55.000 0.00 0.00 0.00 3.49
1788 2916 1.080230 CTGCTGCGAGTGTACTGCT 60.080 57.895 0.00 0.00 0.00 4.24
1789 2917 1.075425 CTCTGCTGCGAGTGTACTGC 61.075 60.000 11.56 0.00 0.00 4.40
1790 2918 0.523519 TCTCTGCTGCGAGTGTACTG 59.476 55.000 16.79 0.00 32.83 2.74
1791 2919 1.403679 GATCTCTGCTGCGAGTGTACT 59.596 52.381 16.79 0.00 32.83 2.73
1792 2920 1.535015 GGATCTCTGCTGCGAGTGTAC 60.535 57.143 16.79 8.02 32.83 2.90
1793 2921 0.741326 GGATCTCTGCTGCGAGTGTA 59.259 55.000 16.79 3.69 32.83 2.90
1853 2981 1.763968 AGGAGCATACAGTAGACGCA 58.236 50.000 3.09 0.00 0.00 5.24
1890 3068 3.019564 GGCAACCTCTCAGCATATGTTT 58.980 45.455 4.29 0.00 0.00 2.83
1979 3157 3.830192 GCCCCTGCTTGCCGATTG 61.830 66.667 0.00 0.00 33.53 2.67
2630 5544 2.603892 GCTAGACGCGGATCAAATACGA 60.604 50.000 12.47 0.00 39.52 3.43
3067 8250 1.147824 AGATCTGATGCCCTTGCCG 59.852 57.895 0.00 0.00 36.33 5.69
3072 8255 1.406065 CGGTCCAGATCTGATGCCCT 61.406 60.000 24.62 0.00 0.00 5.19
3139 8322 2.708386 AGTCGGATAGCGTAAGATGC 57.292 50.000 0.00 0.00 43.02 3.91
3159 8342 5.981088 AAAAACCATGCATGTGATAGACA 57.019 34.783 24.58 0.00 39.53 3.41
3182 8365 4.439426 GCACATGGTTTCTACACACACAAA 60.439 41.667 0.00 0.00 0.00 2.83
3183 8366 3.066064 GCACATGGTTTCTACACACACAA 59.934 43.478 0.00 0.00 0.00 3.33
3212 8397 1.074727 TCAATTTGGGCCTCCTTCGAA 59.925 47.619 4.53 0.00 0.00 3.71
3214 8399 1.098050 CTCAATTTGGGCCTCCTTCG 58.902 55.000 4.53 0.00 0.00 3.79
3215 8400 1.821136 CACTCAATTTGGGCCTCCTTC 59.179 52.381 4.53 0.00 0.00 3.46
3218 8403 1.821136 CTTCACTCAATTTGGGCCTCC 59.179 52.381 4.53 0.00 0.00 4.30
3219 8404 1.203287 GCTTCACTCAATTTGGGCCTC 59.797 52.381 4.53 0.00 0.00 4.70
3220 8405 1.203100 AGCTTCACTCAATTTGGGCCT 60.203 47.619 4.53 0.00 0.00 5.19
3221 8406 1.203287 GAGCTTCACTCAATTTGGGCC 59.797 52.381 0.00 0.00 45.49 5.80
3234 8438 2.079158 CCGCTTTGATCTTGAGCTTCA 58.921 47.619 11.75 0.00 34.33 3.02
3235 8439 1.202121 GCCGCTTTGATCTTGAGCTTC 60.202 52.381 11.75 0.00 34.33 3.86
3248 8452 4.416738 GCTGAGAGGGGCCGCTTT 62.417 66.667 24.96 19.15 0.00 3.51
3252 8456 1.899437 TTACAAGCTGAGAGGGGCCG 61.899 60.000 0.00 0.00 0.00 6.13
3253 8457 0.393132 GTTACAAGCTGAGAGGGGCC 60.393 60.000 0.00 0.00 0.00 5.80
3254 8458 0.741221 CGTTACAAGCTGAGAGGGGC 60.741 60.000 0.00 0.00 0.00 5.80
3255 8459 0.895530 TCGTTACAAGCTGAGAGGGG 59.104 55.000 0.00 0.00 0.00 4.79
3256 8460 2.428890 AGATCGTTACAAGCTGAGAGGG 59.571 50.000 0.00 0.00 0.00 4.30
3257 8461 3.701241 GAGATCGTTACAAGCTGAGAGG 58.299 50.000 0.00 0.00 0.00 3.69
3258 8462 3.064134 TCGAGATCGTTACAAGCTGAGAG 59.936 47.826 1.70 0.00 40.80 3.20
3259 8463 3.007635 TCGAGATCGTTACAAGCTGAGA 58.992 45.455 1.70 0.00 40.80 3.27
3321 8525 5.859495 AGCTAGTTGGAATAATAGTCCTGC 58.141 41.667 8.30 5.12 36.03 4.85
3322 8526 8.410673 TCTAGCTAGTTGGAATAATAGTCCTG 57.589 38.462 20.10 0.00 36.03 3.86
3328 8952 7.899172 TGGCCTATCTAGCTAGTTGGAATAATA 59.101 37.037 20.10 7.37 0.00 0.98
3352 8976 4.754618 TCTTGTGCATAAGTAGTGTTGTGG 59.245 41.667 20.91 0.00 0.00 4.17
3407 9031 9.771534 TTAGGGGATTTTAAGAACAACATTTTG 57.228 29.630 0.00 0.00 38.83 2.44
3488 9117 6.882678 GTCTCTAAAAGGCTATTGGGTGTTAA 59.117 38.462 0.00 0.00 0.00 2.01
3528 9157 5.852229 GTGAAACACTAGTACTCGTTCTGAG 59.148 44.000 0.00 0.00 43.90 3.35
3629 9258 0.393537 CCGAGGGCATGCTTCTTCTT 60.394 55.000 18.92 0.00 0.00 2.52
3630 9259 1.222936 CCGAGGGCATGCTTCTTCT 59.777 57.895 18.92 7.62 0.00 2.85
3631 9260 3.819188 CCGAGGGCATGCTTCTTC 58.181 61.111 18.92 6.82 0.00 2.87
3651 9280 6.631238 CAGAACAAGTTACAACAAATACGGTG 59.369 38.462 0.00 0.00 0.00 4.94
3674 9303 9.787626 CTTACAGTGTACGTGTTTTTATAACAG 57.212 33.333 1.43 0.00 0.00 3.16
3684 9313 5.177326 TGTTTTCCTTACAGTGTACGTGTT 58.823 37.500 1.43 0.00 0.00 3.32
3685 9314 4.757594 TGTTTTCCTTACAGTGTACGTGT 58.242 39.130 1.43 6.01 0.00 4.49
3688 9349 5.679792 GCTTTTGTTTTCCTTACAGTGTACG 59.320 40.000 1.43 0.54 0.00 3.67
3850 9523 0.393077 TCCTAATTAGCCGGCTCAGC 59.607 55.000 36.73 1.08 0.00 4.26
3872 9545 6.857848 TCTCTCTCTCTCTCTCTATCTCTCT 58.142 44.000 0.00 0.00 0.00 3.10
3873 9546 6.945435 TCTCTCTCTCTCTCTCTCTATCTCTC 59.055 46.154 0.00 0.00 0.00 3.20
3874 9547 6.857848 TCTCTCTCTCTCTCTCTCTATCTCT 58.142 44.000 0.00 0.00 0.00 3.10
3875 9548 6.945435 TCTCTCTCTCTCTCTCTCTCTATCTC 59.055 46.154 0.00 0.00 0.00 2.75
3876 9549 6.857848 TCTCTCTCTCTCTCTCTCTCTATCT 58.142 44.000 0.00 0.00 0.00 1.98
3877 9550 6.945435 TCTCTCTCTCTCTCTCTCTCTCTATC 59.055 46.154 0.00 0.00 0.00 2.08
3878 9551 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
3879 9552 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
3880 9553 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3881 9554 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3882 9555 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3883 9556 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3884 9557 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3885 9558 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3886 9559 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3887 9560 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
3888 9561 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
3889 9562 5.242838 CCTACTCTCTCTCTCTCTCTCTCTC 59.757 52.000 0.00 0.00 0.00 3.20
3890 9563 5.144100 CCTACTCTCTCTCTCTCTCTCTCT 58.856 50.000 0.00 0.00 0.00 3.10
3891 9564 4.896482 ACCTACTCTCTCTCTCTCTCTCTC 59.104 50.000 0.00 0.00 0.00 3.20
3907 9580 3.900941 TGGTTTCGTTTCGTACCTACTC 58.099 45.455 13.47 0.00 35.20 2.59
4014 9697 3.767230 CGTGACAGTGAAGCGGCG 61.767 66.667 0.51 0.51 0.00 6.46
4045 9731 2.351726 GTCAAGCGAAAGTTGTGAGTGT 59.648 45.455 0.00 0.00 0.00 3.55
4083 9771 1.665916 CACCACAGTCCTGACGCTG 60.666 63.158 0.40 0.00 38.58 5.18
4090 9778 0.886563 GTACGTAGCACCACAGTCCT 59.113 55.000 0.00 0.00 0.00 3.85
4102 9790 2.892799 GCGATTATCGACACGTACGTAG 59.107 50.000 22.34 17.19 43.74 3.51
4106 9811 3.294102 TCATGCGATTATCGACACGTAC 58.706 45.455 19.40 0.00 43.74 3.67
4238 10355 5.526479 CAGGCGATGTGTCTTACTAGTAGTA 59.474 44.000 5.90 5.90 0.00 1.82
4240 10357 4.335874 ACAGGCGATGTGTCTTACTAGTAG 59.664 45.833 2.23 0.00 41.91 2.57
4318 10463 8.256356 TCTCCAAATCAAAAGATAAAACCCAA 57.744 30.769 0.00 0.00 0.00 4.12
4353 10498 7.643579 ACTCATGTTAGAAACTTTCAGAAAGC 58.356 34.615 21.00 6.83 42.27 3.51
4391 10536 7.216317 GTGCAGTCATATCAAACGTTTATGTTC 59.784 37.037 14.20 11.19 0.00 3.18
4403 10548 1.199615 TCCGGGTGCAGTCATATCAA 58.800 50.000 0.00 0.00 0.00 2.57
4418 10564 4.630069 ACAAGATGTCTAATTCGTTTCCGG 59.370 41.667 0.00 0.00 33.95 5.14
4419 10565 5.779806 ACAAGATGTCTAATTCGTTTCCG 57.220 39.130 0.00 0.00 0.00 4.30
4466 10625 4.380444 CCGGCAAACAGTATGCACTTATTT 60.380 41.667 0.00 0.00 45.60 1.40
4500 10659 0.961019 TGCCATCTTGTTGCAGGAAC 59.039 50.000 0.00 0.00 34.84 3.62
4645 10806 7.267128 TCTGTTCTTGTGAGCATTTTTCATTT 58.733 30.769 0.00 0.00 33.10 2.32
4648 10809 5.833406 TCTGTTCTTGTGAGCATTTTTCA 57.167 34.783 0.00 0.00 33.10 2.69
4696 10862 7.406104 AGTTTTCCTATCTTTCTTATGCCAGT 58.594 34.615 0.00 0.00 0.00 4.00
4760 10926 1.102978 GTGGCACGGGCTATTTTCAT 58.897 50.000 10.74 0.00 40.87 2.57
4777 10943 4.753233 GGATCTATCCGATGAAGATGGTG 58.247 47.826 0.00 0.00 37.19 4.17
4831 10998 0.247735 CGCTACTCACTCCGACGAAG 60.248 60.000 0.00 0.00 0.00 3.79
4832 10999 0.671472 TCGCTACTCACTCCGACGAA 60.671 55.000 0.00 0.00 0.00 3.85
4833 11000 1.079612 TCGCTACTCACTCCGACGA 60.080 57.895 0.00 0.00 0.00 4.20
4914 11081 7.598278 TGCATAAATGATTTGGTCTTTAACGT 58.402 30.769 0.00 0.00 0.00 3.99
4915 11082 7.754924 ACTGCATAAATGATTTGGTCTTTAACG 59.245 33.333 0.00 0.00 0.00 3.18
5055 11224 6.170506 AGTCAGTGTTGTTGTTGTCTTTCTA 58.829 36.000 0.00 0.00 0.00 2.10
5056 11225 5.003804 AGTCAGTGTTGTTGTTGTCTTTCT 58.996 37.500 0.00 0.00 0.00 2.52
5057 11226 5.296813 AGTCAGTGTTGTTGTTGTCTTTC 57.703 39.130 0.00 0.00 0.00 2.62
5058 11227 5.703592 TGTAGTCAGTGTTGTTGTTGTCTTT 59.296 36.000 0.00 0.00 0.00 2.52
5059 11228 5.121768 GTGTAGTCAGTGTTGTTGTTGTCTT 59.878 40.000 0.00 0.00 0.00 3.01
5060 11229 4.630069 GTGTAGTCAGTGTTGTTGTTGTCT 59.370 41.667 0.00 0.00 0.00 3.41
5061 11230 4.630069 AGTGTAGTCAGTGTTGTTGTTGTC 59.370 41.667 0.00 0.00 0.00 3.18
5062 11231 4.575885 AGTGTAGTCAGTGTTGTTGTTGT 58.424 39.130 0.00 0.00 0.00 3.32
5063 11232 5.545658 AAGTGTAGTCAGTGTTGTTGTTG 57.454 39.130 0.00 0.00 0.00 3.33
5064 11233 5.938125 AGAAAGTGTAGTCAGTGTTGTTGTT 59.062 36.000 0.00 0.00 0.00 2.83
5065 11234 5.488341 AGAAAGTGTAGTCAGTGTTGTTGT 58.512 37.500 0.00 0.00 0.00 3.32
5066 11235 6.128282 ACAAGAAAGTGTAGTCAGTGTTGTTG 60.128 38.462 0.00 0.00 32.21 3.33
5067 11236 5.938125 ACAAGAAAGTGTAGTCAGTGTTGTT 59.062 36.000 0.00 0.00 29.64 2.83
5068 11237 5.488341 ACAAGAAAGTGTAGTCAGTGTTGT 58.512 37.500 0.00 0.00 0.00 3.32
5069 11238 5.006746 GGACAAGAAAGTGTAGTCAGTGTTG 59.993 44.000 0.00 0.00 0.00 3.33
5070 11239 5.104900 AGGACAAGAAAGTGTAGTCAGTGTT 60.105 40.000 0.00 0.00 0.00 3.32
5071 11240 4.406003 AGGACAAGAAAGTGTAGTCAGTGT 59.594 41.667 0.00 0.00 0.00 3.55
5072 11241 4.747108 CAGGACAAGAAAGTGTAGTCAGTG 59.253 45.833 0.00 0.00 0.00 3.66
5073 11242 4.406003 ACAGGACAAGAAAGTGTAGTCAGT 59.594 41.667 0.00 0.00 0.00 3.41
5074 11243 4.950050 ACAGGACAAGAAAGTGTAGTCAG 58.050 43.478 0.00 0.00 0.00 3.51
5075 11244 4.202223 GGACAGGACAAGAAAGTGTAGTCA 60.202 45.833 0.00 0.00 33.19 3.41
5076 11245 4.202223 TGGACAGGACAAGAAAGTGTAGTC 60.202 45.833 0.00 0.00 31.89 2.59
5077 11246 3.709653 TGGACAGGACAAGAAAGTGTAGT 59.290 43.478 0.00 0.00 0.00 2.73
5117 11286 4.082125 AGCTTGCCTTAATTAGCTGTTGT 58.918 39.130 0.00 0.00 42.07 3.32
5216 11387 8.271458 TCAGTGGCATTTCATCTACCTTAATTA 58.729 33.333 0.00 0.00 0.00 1.40
5275 11451 4.090057 GCCACGAGCTCCGCAAAC 62.090 66.667 8.47 0.00 43.32 2.93
5311 11487 2.031516 GCAGGCGATCATCGGGATG 61.032 63.158 9.59 2.21 40.84 3.51
5566 11945 7.382898 AGAGAGTGAAACCTAAGAGATTGAAC 58.617 38.462 0.00 0.00 37.80 3.18
5718 12097 3.249687 GGTGAGGTGAACCACATCC 57.750 57.895 8.90 3.51 43.34 3.51
5865 12244 2.762535 ACCAAGAACCATACGTCCAG 57.237 50.000 0.00 0.00 0.00 3.86
5869 12248 2.774687 GGTGAACCAAGAACCATACGT 58.225 47.619 0.00 0.00 33.94 3.57
5891 12270 3.857549 TCTTCATGACGTTCCTCTCAG 57.142 47.619 0.00 0.00 0.00 3.35
5901 12280 4.931601 TGGATTCTGAGTTTCTTCATGACG 59.068 41.667 0.00 0.00 0.00 4.35
6066 12451 6.757897 TGCCTTCACAATCAGGTTATTAAG 57.242 37.500 0.00 0.00 32.06 1.85
6424 13080 9.520515 GGGGTAAAGATATGATCACACATATTT 57.479 33.333 0.00 4.76 41.60 1.40
6431 13087 6.320434 TGTTGGGGTAAAGATATGATCACA 57.680 37.500 0.00 0.00 0.00 3.58
6432 13088 5.765182 CCTGTTGGGGTAAAGATATGATCAC 59.235 44.000 0.00 0.00 0.00 3.06
6447 13103 4.748144 GCTCTGGGCCTGTTGGGG 62.748 72.222 4.53 0.00 35.12 4.96
6696 13362 3.972502 GTGTAAAAACATTGTCTCGCCAC 59.027 43.478 0.00 0.00 0.00 5.01
6697 13363 3.003897 GGTGTAAAAACATTGTCTCGCCA 59.996 43.478 0.00 0.00 0.00 5.69
6708 13374 5.047660 AGAGTTGCTTGTTGGTGTAAAAACA 60.048 36.000 0.00 0.00 34.57 2.83
6711 13377 4.947388 AGAGAGTTGCTTGTTGGTGTAAAA 59.053 37.500 0.00 0.00 0.00 1.52
6911 13578 5.449304 CGTTAGCTGATCATACGTGATACA 58.551 41.667 0.00 0.00 44.96 2.29
6913 13580 4.758165 TCCGTTAGCTGATCATACGTGATA 59.242 41.667 0.00 0.00 44.96 2.15
6947 13616 4.601019 GATTATCCACACCTGCGAAATTG 58.399 43.478 0.00 0.00 0.00 2.32
7138 13807 1.869132 GTGGTTCAGGGAACGTGTTAC 59.131 52.381 0.00 0.00 45.38 2.50
7146 13815 0.679505 CAGAGTCGTGGTTCAGGGAA 59.320 55.000 0.00 0.00 0.00 3.97
7167 13836 6.344500 ACAAGATCATGTCATGTAGGTTCTC 58.656 40.000 12.54 1.06 37.03 2.87
7178 13857 3.999001 GTCAGCTCAACAAGATCATGTCA 59.001 43.478 3.70 0.00 31.81 3.58
7179 13858 3.373439 GGTCAGCTCAACAAGATCATGTC 59.627 47.826 3.70 0.00 31.81 3.06
7207 13886 3.681417 GCAGCCAATTCTGAAATGTTTCC 59.319 43.478 4.87 0.00 36.19 3.13
7208 13887 3.681417 GGCAGCCAATTCTGAAATGTTTC 59.319 43.478 6.55 0.00 36.19 2.78
7222 13901 3.831637 ACCCACCTTGGCAGCCAA 61.832 61.111 25.81 25.81 41.69 4.52
7235 13914 4.758251 CCACGCGCTCATCACCCA 62.758 66.667 5.73 0.00 0.00 4.51
7297 13976 4.082523 ACCATGTCCCCGCACTCG 62.083 66.667 0.00 0.00 0.00 4.18
7311 13990 0.107643 TTTGTCCATGTCGAGCACCA 59.892 50.000 0.00 0.00 0.00 4.17
7375 14054 0.955428 TGCAACCAGACGATCAAGCC 60.955 55.000 0.00 0.00 0.00 4.35
7426 14112 0.250038 GCCCTTCAGCGAGCATATGA 60.250 55.000 6.97 0.00 0.00 2.15
7427 14113 1.233285 GGCCCTTCAGCGAGCATATG 61.233 60.000 0.00 0.00 0.00 1.78
7428 14114 1.072159 GGCCCTTCAGCGAGCATAT 59.928 57.895 0.00 0.00 0.00 1.78
7440 14139 1.210204 TCTTCCTCAGCATGGCCCTT 61.210 55.000 0.00 0.00 36.16 3.95
7442 14141 0.750911 CTTCTTCCTCAGCATGGCCC 60.751 60.000 0.00 0.00 36.16 5.80
7443 14142 0.254178 TCTTCTTCCTCAGCATGGCC 59.746 55.000 0.00 0.00 36.16 5.36
7447 14146 2.570752 TCTGCTTCTTCTTCCTCAGCAT 59.429 45.455 0.00 0.00 39.69 3.79
7470 14169 3.745480 GCCACTCATCTGCTAGCCAATAA 60.745 47.826 13.29 0.00 0.00 1.40
7473 14172 0.107508 GCCACTCATCTGCTAGCCAA 60.108 55.000 13.29 0.00 0.00 4.52
7581 14280 6.516718 ACCAAGTCTCATTACCTCATTATCG 58.483 40.000 0.00 0.00 0.00 2.92
7591 14290 4.189639 AGGTCGAACCAAGTCTCATTAC 57.810 45.455 0.00 0.00 41.95 1.89
7611 14310 4.172505 CAGATGGCGCTAGAAATAGCTAG 58.827 47.826 7.64 0.00 40.75 3.42
7612 14311 3.615110 GCAGATGGCGCTAGAAATAGCTA 60.615 47.826 7.64 0.00 40.75 3.32
7613 14312 2.869636 GCAGATGGCGCTAGAAATAGCT 60.870 50.000 7.64 0.00 40.75 3.32
7614 14313 1.462670 GCAGATGGCGCTAGAAATAGC 59.537 52.381 7.64 0.00 39.59 2.97
7628 14327 1.236616 TGTTGACGCAAGGGCAGATG 61.237 55.000 0.00 0.00 46.39 2.90
7718 14578 1.494766 CGTCGGCACATGTGTCACAA 61.495 55.000 28.60 11.72 34.22 3.33
7723 14583 1.080093 CTACCGTCGGCACATGTGT 60.080 57.895 26.01 7.84 0.00 3.72
7724 14584 0.171679 TACTACCGTCGGCACATGTG 59.828 55.000 21.83 21.83 0.00 3.21
7725 14585 0.171903 GTACTACCGTCGGCACATGT 59.828 55.000 12.28 5.87 0.00 3.21
7726 14586 0.454600 AGTACTACCGTCGGCACATG 59.545 55.000 12.28 0.00 0.00 3.21
7829 14689 2.237143 CAGGCAGAAGATAGGTTCACCA 59.763 50.000 0.00 0.00 38.89 4.17
7840 14700 2.360844 CTCGTCTAGACAGGCAGAAGA 58.639 52.381 22.37 7.98 0.00 2.87
7853 14713 0.305009 CGCTGAATCGAGCTCGTCTA 59.695 55.000 33.33 17.05 40.80 2.59
7901 14761 1.895798 GTCCACTCTCTGTCCACATCA 59.104 52.381 0.00 0.00 0.00 3.07
7928 14788 2.526873 ACGGGAAGCTCCACCACT 60.527 61.111 6.83 0.00 38.64 4.00
8069 14930 2.569354 GCGCCCAACCAAACCATGA 61.569 57.895 0.00 0.00 0.00 3.07
8235 15096 1.464608 CCGTGACGATGAAACATGCTT 59.535 47.619 6.54 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.